BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00018192
         (326 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGH20680.1| reverse transcriptase, partial [Raphanus sativus]      111   9e-23
gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus]      109   4e-22
gb|AFK88549.1| reverse transcriptase, partial [Arabidopsis halle...   109   4e-22
gb|AFK88547.1| reverse transcriptase, partial [Arabidopsis halle...   109   4e-22
gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halle...   109   4e-22
gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halle...   109   4e-22
gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halle...   109   4e-22
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   109   4e-22
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]             109   4e-22
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   109   4e-22
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]         109   4e-22
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   109   4e-22
gb|AGH20675.1| reverse transcriptase, partial [Olimarabidopsis c...   108   1e-21
gb|AFK88546.1| reverse transcriptase, partial [Arabidopsis halle...   108   1e-21
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         108   1e-21
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   108   1e-21
gb|AFK88553.1| reverse transcriptase, partial [Arabidopsis halle...   107   1e-21
gb|AFK88550.1| reverse transcriptase, partial [Arabidopsis halle...   107   1e-21
gb|AFK88548.1| reverse transcriptase, partial [Arabidopsis halle...   107   1e-21
gb|AGH20668.1| reverse transcriptase, partial [Arabis hirsuta]        107   2e-21

>gb|AGH20680.1| reverse transcriptase, partial [Raphanus sativus]
          Length = 315

 Score =  111 bits (278), Expect = 9e-23
 Identities = 58/107 (54%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  D                  WN RID++FK  G  KCP EHALY+K      D
Sbjct: 128 GYIVKGEEDKVLRLKKALNGLKQAPRAWNTRIDKYFKEKGFIKCPYEHALYIKT--QNND 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M +DFK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPIMFEDFKKEMTKEFEMTDIGLMSYYLGIE 232


>gb|AGH20679.1| reverse transcriptase, partial [Raphanus sativus]
          Length = 315

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 65/107 (60%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  D                  WN RID++F   G  KCP EHALY+K      D
Sbjct: 128 GYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFNEKGFIKCPYEHALYIKT--QNND 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M +DFK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPIMFEDFKKEMTKEFEMTDIGLMSYYLGIE 232


>gb|AFK88549.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 128 GYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKDD 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 232


>gb|AFK88547.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 128 GYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKDD 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 232


>gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 128 GYIVKGEEDKVLRLKKALYGLKQAPRSWNTRIDKYFKEKDFIKCPYEHALYIK--IQKDD 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 232


>gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 128 GYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKDD 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 232


>gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera] gi|389595484|gb|AFK88545.1| reverse
           transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 128 GYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKDD 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 232


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 66/107 (61%)
 Frame = +1

Query: 4    GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
            GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 967  GYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKED 1024

Query: 184  ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
            ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 1025 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 1071


>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
          Length = 1291

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 66/107 (61%)
 Frame = +1

Query: 4    GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
            GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 906  GYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKED 963

Query: 184  ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
            ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 964  ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 1010


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 66/107 (61%)
 Frame = +1

Query: 4    GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
            GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 935  GYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKED 992

Query: 184  ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
            ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 993  ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 1039


>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
          Length = 623

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 464 GYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKED 521

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 522 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 568


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  109 bits (273), Expect = 4e-22
 Identities = 57/107 (53%), Positives = 66/107 (61%)
 Frame = +1

Query: 4    GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
            GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 967  GYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKED 1024

Query: 184  ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
            ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 1025 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 1071


>gb|AGH20675.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
          Length = 315

 Score =  108 bits (269), Expect = 1e-21
 Identities = 56/107 (52%), Positives = 65/107 (60%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GYV +G  D                  W+ RID++FK     KCP EHALY+K      D
Sbjct: 128 GYVVKGEEDKVLRLRKALYGLKQAPRAWSTRIDKYFKEKNFIKCPYEHALYIKT--QNND 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C Y+DDLIF  NN +M +DFKQ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYIDDLIFTNNNPNMFEDFKQEMTKEFEMTDIGLMSYYLGIE 232


>gb|AFK88546.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  108 bits (269), Expect = 1e-21
 Identities = 56/107 (52%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 128 GYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKDD 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  + ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIE 232


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  108 bits (269), Expect = 1e-21
 Identities = 56/107 (52%), Positives = 66/107 (61%)
 Frame = +1

Query: 4    GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
            GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 967  GYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKED 1024

Query: 184  ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
            ILI C YVDDLIF GNN  + ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 1025 ILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIE 1071


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  108 bits (269), Expect = 1e-21
 Identities = 56/107 (52%), Positives = 66/107 (61%)
 Frame = +1

Query: 4    GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
            GY+ +G  D                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 967  GYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKED 1024

Query: 184  ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
            ILI C YVDDLIF GNN  + ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 1025 ILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIE 1071


>gb|AFK88553.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  107 bits (268), Expect = 1e-21
 Identities = 56/107 (52%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  D                  WN RI+++FK     KCP EHALY+K  I   D
Sbjct: 128 GYIVKGEEDKVLRLKKALYGLKQAPRAWNTRINKYFKKKDFIKCPYEHALYIK--IQKDD 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 232


>gb|AFK88550.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  107 bits (268), Expect = 1e-21
 Identities = 56/107 (52%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  +                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 128 GYIVKGEENKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKDD 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 232


>gb|AFK88548.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
           gemmifera]
          Length = 315

 Score =  107 bits (268), Expect = 1e-21
 Identities = 56/107 (52%), Positives = 66/107 (61%)
 Frame = +1

Query: 4   GYVKRGN*DXXXXXXXXXXXXXXXXXXWNKRIDQFFKG*GLQKCPSEHALYVKQGISTTD 183
           GY+ +G  +                  WN RID++FK     KCP EHALY+K  I   D
Sbjct: 128 GYIVKGEENKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIK--IQKDD 185

Query: 184 ILIVCFYVDDLIF*GNNLDMIKDFKQAMKKEFEMTDIGLMSYFLGIE 324
           ILI C YVDDLIF GNN  M ++FK+ M KEFEMTDIGLMSY+LGIE
Sbjct: 186 ILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIE 232


>gb|AGH20668.1| reverse transcriptase, partial [Arabis hirsuta]
          Length = 315

 Score =  107 bits (267), Expect = 2e-21
 Identities = 53/80 (66%), Positives = 59/80 (73%)
 Frame = +1

Query: 85  WNKRIDQFFKG*GLQKCPSEHALYVKQGISTTDILIVCFYVDDLIF*GNNLDMIKDFKQA 264
           WN RID++FK     KCP EHALY+K  I   DILI C YVDDLIF GNN  M ++FK  
Sbjct: 155 WNTRIDKYFKEKNFIKCPYEHALYIK--IQNGDILIACLYVDDLIFTGNNPSMFEEFKMM 212

Query: 265 MKKEFEMTDIGLMSYFLGIE 324
           M KEFEMTDIGLMSY+LGIE
Sbjct: 213 MTKEFEMTDIGLMSYYLGIE 232