BLASTX nr result

ID: Cocculus23_contig00018134 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00018134
         (277 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002885942.1| hypothetical protein ARALYDRAFT_480374 [Arab...    56   5e-06
ref|NP_179092.1| Mpv17/PMP22 family protein [Arabidopsis thalian...    55   8e-06

>ref|XP_002885942.1| hypothetical protein ARALYDRAFT_480374 [Arabidopsis lyrata subsp.
           lyrata] gi|297331782|gb|EFH62201.1| hypothetical protein
           ARALYDRAFT_480374 [Arabidopsis lyrata subsp. lyrata]
          Length = 248

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = +2

Query: 182 VGWYLGMIKSHPVLTKSITCGGIYMAADVSSQ 277
           VGWYLGM+KS PV+TKS+TC  IY+AAD+SSQ
Sbjct: 70  VGWYLGMVKSRPVVTKSVTCSLIYIAADLSSQ 101


>ref|NP_179092.1| Mpv17/PMP22 family protein [Arabidopsis thaliana]
           gi|3650028|gb|AAC61283.1| 22 kDa peroxisomal membrane
           protein [Arabidopsis thaliana]
           gi|124300964|gb|ABN04734.1| At2g14860 [Arabidopsis
           thaliana] gi|330251249|gb|AEC06343.1| Mpv17/PMP22 family
           protein [Arabidopsis thaliana]
          Length = 252

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = +2

Query: 182 VGWYLGMIKSHPVLTKSITCGGIYMAADVSSQ 277
           VGWYLGM+KSHPV+TKS+T   IY+AAD+SSQ
Sbjct: 74  VGWYLGMVKSHPVVTKSVTSSLIYIAADLSSQ 105


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