BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00017834
         (1003 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30094.3| unnamed protein product [Vitis vinifera]              411   e-112
ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containi...   411   e-112
gb|EXB41187.1| hypothetical protein L484_005223 [Morus notabilis]     380   e-103
ref|XP_007204422.1| hypothetical protein PRUPE_ppb002215mg [Prun...   374   e-101
ref|XP_007161435.1| hypothetical protein PHAVU_001G068400g [Phas...   361   3e-97
ref|XP_006587960.1| PREDICTED: pentatricopeptide repeat-containi...   353   6e-95
ref|XP_002322628.1| pentatricopeptide repeat-containing family p...   350   5e-94
ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   350   7e-94
ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containi...   350   7e-94
ref|XP_007028547.1| Pentatricopeptide repeat (PPR) superfamily p...   349   1e-93
ref|XP_006827212.1| hypothetical protein AMTR_s00010p00259620 [A...   347   3e-93
gb|EMT01545.1| hypothetical protein F775_52571 [Aegilops tauschii]    338   2e-90
ref|XP_004498123.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   338   3e-90
ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [S...   337   3e-90
dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]    335   2e-89
gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]        331   2e-88
gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvat...   328   2e-87
ref|XP_006340092.1| PREDICTED: pentatricopeptide repeat-containi...   328   2e-87
ref|XP_004966624.1| PREDICTED: pentatricopeptide repeat-containi...   327   5e-87
ref|XP_003589755.1| Pentatricopeptide repeat-containing protein ...   325   1e-86

>emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  411 bits (1057), Expect = e-112
 Identities = 206/268 (76%), Positives = 232/268 (86%), Gaps = 2/268 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFD--RSSQRDLVSWNGMIAAYAHHGHGNE 176
            SKTVYQDS FV SALI+MYSKCGELG AR MFD   +SQRDLVSWNG+IAAYAHHG+G E
Sbjct: 343  SKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKE 402

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI   +EM+KSG KPDDVTYVG+LSACSH+GLV++GL+YFDELV + SI VREDHYACLV
Sbjct: 403  AINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLV 462

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLCGRAGRL +AF F ERL   K SA VWGALLA C+ H N+KIGK AAK+LLEVEP NA
Sbjct: 463  DLCGRAGRLKEAFGFIERLET-KPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENA 521

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GTY+LLSNIYAS GKW+EAA+VRLKMKDKGLKKQPGCSWIEV NRVHVFVVGDKSHSQ+K
Sbjct: 522  GTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSK 581

Query: 717  PIYSLLKDLHFKMKRAGYVPHDKYKMEE 800
             IYSLL+DLH KMK+AGY P++ +  +E
Sbjct: 582  LIYSLLRDLHSKMKKAGYEPNNDFISDE 609


>ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
            mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  411 bits (1057), Expect = e-112
 Identities = 206/268 (76%), Positives = 232/268 (86%), Gaps = 2/268 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFD--RSSQRDLVSWNGMIAAYAHHGHGNE 176
            SKTVYQDS FV SALI+MYSKCGELG AR MFD   +SQRDLVSWNG+IAAYAHHG+G E
Sbjct: 364  SKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKE 423

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI   +EM+KSG KPDDVTYVG+LSACSH+GLV++GL+YFDELV + SI VREDHYACLV
Sbjct: 424  AINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLV 483

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLCGRAGRL +AF F ERL   K SA VWGALLA C+ H N+KIGK AAK+LLEVEP NA
Sbjct: 484  DLCGRAGRLKEAFGFIERLET-KPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENA 542

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GTY+LLSNIYAS GKW+EAA+VRLKMKDKGLKKQPGCSWIEV NRVHVFVVGDKSHSQ+K
Sbjct: 543  GTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSK 602

Query: 717  PIYSLLKDLHFKMKRAGYVPHDKYKMEE 800
             IYSLL+DLH KMK+AGY P++ +  +E
Sbjct: 603  LIYSLLRDLHSKMKKAGYEPNNDFISDE 630


>gb|EXB41187.1| hypothetical protein L484_005223 [Morus notabilis]
          Length = 622

 Score =  380 bits (975), Expect = e-103
 Identities = 185/268 (69%), Positives = 224/268 (83%), Gaps = 2/268 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFD--RSSQRDLVSWNGMIAAYAHHGHGNE 176
            SKTV+Q S  + SALI+MYSKCGEL  AR MFD    SQRDLVSWNGMIAAYAHHG G+E
Sbjct: 354  SKTVFQGSEILVSALINMYSKCGELSTARKMFDDGSKSQRDLVSWNGMIAAYAHHGCGSE 413

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L  E+Q SG KP+DVTYVG+LSACSH+GLVD+GLRYFDELV +G++ V+EDHY C V
Sbjct: 414  AINLYNELQASGFKPNDVTYVGLLSACSHAGLVDEGLRYFDELVKSGTVRVKEDHYTCYV 473

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLCGRAG+L +A+DF ERLG  K S  VWG LLA C+ HG++ IG+LAA++LLE EP NA
Sbjct: 474  DLCGRAGKLKQAYDFIERLGT-KPSTTVWGTLLAGCNVHGDMNIGRLAAQKLLEYEPENA 532

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GTY+LLSN+YAS+GKW+EAAK+RLKMK+KGLKKQPGCSWIEV N VHVFVVGD+SH+Q+ 
Sbjct: 533  GTYLLLSNVYASSGKWREAAKMRLKMKEKGLKKQPGCSWIEVGNMVHVFVVGDESHTQSG 592

Query: 717  PIYSLLKDLHFKMKRAGYVPHDKYKMEE 800
             IYSL+ DLH KMK+ GY+ +++  ++E
Sbjct: 593  LIYSLVCDLHEKMKKIGYISNNELTLDE 620



 Score = 67.8 bits (164), Expect = 7e-09
 Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 4/184 (2%)
 Frame = +3

Query: 39  SALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGLK 218
           + +I+ + + GEL  A ++F++  +++ +SW  MI+ Y   G   EA+ +  +M   G++
Sbjct: 265 NTMITGFIQNGELKRASNLFNKMPEKNSISWTTMISGYIQDGQNEEALKMFTKMVVDGIR 324

Query: 219 PDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLCGRAGRLDKAFD 398
           P++ T+  VLSACS+   + +G +   +++     +  E   + L+++  + G L  A  
Sbjct: 325 PNEATFASVLSACSNLAGLGEG-QQIHQMISKTVFQGSEILVSALINMYSKCGELSTARK 383

Query: 399 FAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPS----NAGTYMLLSNIY 566
             +     ++    W  ++A  + HG    G  A     E++ S    N  TY+ L +  
Sbjct: 384 MFDDGSKSQRDLVSWNGMIAAYAHHG---CGSEAINLYNELQASGFKPNDVTYVGLLSAC 440

Query: 567 ASAG 578
           + AG
Sbjct: 441 SHAG 444


>ref|XP_007204422.1| hypothetical protein PRUPE_ppb002215mg [Prunus persica]
            gi|462399953|gb|EMJ05621.1| hypothetical protein
            PRUPE_ppb002215mg [Prunus persica]
          Length = 634

 Score =  374 bits (959), Expect = e-101
 Identities = 183/268 (68%), Positives = 224/268 (83%), Gaps = 2/268 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFDR--SSQRDLVSWNGMIAAYAHHGHGNE 176
            SKTV+ +  F+ SALI+MYSKCGEL  AR MFD   +  RD+VSWNGMIAAYAHHG G E
Sbjct: 365  SKTVHHECAFLVSALINMYSKCGELVTARKMFDDGLTIHRDMVSWNGMIAAYAHHGCGIE 424

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L  EM+K G KPDDVTYVG+LSACSH+GLV++GL+YF+EL+ +GSI+VREDHY CLV
Sbjct: 425  AINLFNEMRKLGCKPDDVTYVGLLSACSHAGLVEEGLKYFNELLRDGSIQVREDHYTCLV 484

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLCGRAGRL +AF+  E+LG  K SA VWGALLA C+ HGN+ IGKLAA++LLE EP  A
Sbjct: 485  DLCGRAGRLKEAFNVLEKLGT-KISASVWGALLAGCNVHGNMDIGKLAAEKLLEGEPEKA 543

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GTY+LL NIYAS+GKW+EAAK+R+KMK+KGLKKQPGCSWIEV N+VHVFVVGDKSH Q++
Sbjct: 544  GTYLLLCNIYASSGKWREAAKIRMKMKEKGLKKQPGCSWIEVGNKVHVFVVGDKSHYQSE 603

Query: 717  PIYSLLKDLHFKMKRAGYVPHDKYKMEE 800
             IYSL+ +LH +MK+ GY+P+D   +++
Sbjct: 604  LIYSLIYNLHERMKKIGYIPYDDLTVDD 631



 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 9/196 (4%)
 Frame = +3

Query: 39  SALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEM-QKSGL 215
           + +I+ + + G+L  A+++F R  Q++++SW  MI  Y   G   +A++   +M   +G+
Sbjct: 275 NTMITGFIQNGDLKRAQELFIRMPQKNVISWTTMITGYVQDGQNEKALMFFSKMLVDNGV 334

Query: 216 KPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYAC------LVDLCGRAG 377
           KP+  T+V VLSACS+     +G +    +        +  H+ C      L+++  + G
Sbjct: 335 KPNQGTFVSVLSACSNLAGFSEGQQIHQMI-------SKTVHHECAFLVSALINMYSKCG 387

Query: 378 RLDKAFDFAERLGLFKQSACVWGALLACCSFHG-NIK-IGKLAAKRLLEVEPSNAGTYML 551
            L  A    +      +    W  ++A  + HG  I+ I      R L  +P +  TY+ 
Sbjct: 388 ELVTARKMFDDGLTIHRDMVSWNGMIAAYAHHGCGIEAINLFNEMRKLGCKPDDV-TYVG 446

Query: 552 LSNIYASAGKWKEAAK 599
           L +  + AG  +E  K
Sbjct: 447 LLSACSHAGLVEEGLK 462


>ref|XP_007161435.1| hypothetical protein PHAVU_001G068400g [Phaseolus vulgaris]
            gi|561034899|gb|ESW33429.1| hypothetical protein
            PHAVU_001G068400g [Phaseolus vulgaris]
          Length = 616

 Score =  361 bits (926), Expect = 3e-97
 Identities = 177/262 (67%), Positives = 214/262 (81%), Gaps = 2/262 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFDRS--SQRDLVSWNGMIAAYAHHGHGNE 176
            SKT++QDS +V SALI+MYSKCGEL IAR MFD     QRDL+SWNGMIAAYAHHG+G E
Sbjct: 347  SKTIFQDSTYVVSALINMYSKCGELRIARKMFDDGLLRQRDLISWNGMIAAYAHHGYGKE 406

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L  EMQ+ G+  +DVT+VG+L+ACSH+GL+++GL+YFDE++ N SI++REDHYACL+
Sbjct: 407  AINLFNEMQELGVPANDVTFVGLLTACSHTGLIEEGLKYFDEILKNRSIQLREDHYACLI 466

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLCGRAGRL +AFD  E LG  + S  VWGALLA C+ HGN  IGKL A+++L +EP NA
Sbjct: 467  DLCGRAGRLKEAFDIIEGLGE-EASLTVWGALLAGCNVHGNADIGKLVAEKILIIEPQNA 525

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GTY LLSN+YASAGKWKEAA VR+KMKD+GLKKQPGCSWIEV N V VFVVGDKSHSQ +
Sbjct: 526  GTYSLLSNMYASAGKWKEAANVRMKMKDRGLKKQPGCSWIEVGNTVQVFVVGDKSHSQYE 585

Query: 717  PIYSLLKDLHFKMKRAGYVPHD 782
             +  LL D+H KMK+A   PH+
Sbjct: 586  LLGHLLDDIHTKMKKAMDTPHN 607


>ref|XP_006587960.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
            mitochondrial-like isoform X2 [Glycine max]
            gi|571479769|ref|XP_006587961.1| PREDICTED:
            pentatricopeptide repeat-containing protein At2g35030,
            mitochondrial-like isoform X3 [Glycine max]
            gi|571479771|ref|XP_003533693.2| PREDICTED:
            pentatricopeptide repeat-containing protein At2g35030,
            mitochondrial-like isoform X1 [Glycine max]
          Length = 618

 Score =  353 bits (906), Expect = 6e-95
 Identities = 176/262 (67%), Positives = 210/262 (80%), Gaps = 2/262 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFDRS--SQRDLVSWNGMIAAYAHHGHGNE 176
            SKTV+QDS  V SALI+MYSKCGEL  AR MFD    SQRDL+SWNGMIAAYAHHG+G E
Sbjct: 350  SKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKE 409

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L  EMQ+ G+  +DVT+VG+L+ACSH+GLV++G +YFDE++ N SI++REDHYACLV
Sbjct: 410  AINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLV 469

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLCGRAGRL +A +  E LG  +    VWGALLA C+ HGN  IGKL A+++L++EP NA
Sbjct: 470  DLCGRAGRLKEASNIIEGLGE-EVPLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQNA 528

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GTY LLSN+YAS GKWKEAA VR++MKD GLKKQPGCSWIEV N V VFVVGDK HSQ +
Sbjct: 529  GTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTVQVFVVGDKPHSQYE 588

Query: 717  PIYSLLKDLHFKMKRAGYVPHD 782
            P+  LL DLH KMK+AG +P D
Sbjct: 589  PLGHLLHDLHTKMKKAGDMPDD 610



 Score = 62.0 bits (149), Expect = 4e-07
 Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
 Frame = +3

Query: 39  SALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGLK 218
           +A+I+ Y++   L  A  +F R  +RD+ SWN MI  +  +G  N A  L  EMQ+  + 
Sbjct: 229 NAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNV- 287

Query: 219 PDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLCGRAGRLDKAFD 398
              +T+  +++     GL ++ LR F +++    ++     +  ++  C     L +   
Sbjct: 288 ---ITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQ 344

Query: 399 FAERLG--LFKQSACVWGALLACCSFHGNIKIG-KLAAKRLLEVEPSNAGTYMLLSNIYA 569
             + +   +F+ S CV  AL+   S  G +    K+    LL      +   M+ +  YA
Sbjct: 345 IHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAA--YA 402

Query: 570 SAGKWKEAAKVRLKMKDKGL 629
             G  KEA  +  +M++ G+
Sbjct: 403 HHGYGKEAINLFNEMQELGV 422


>ref|XP_002322628.1| pentatricopeptide repeat-containing family protein [Populus
            trichocarpa] gi|222867258|gb|EEF04389.1|
            pentatricopeptide repeat-containing family protein
            [Populus trichocarpa]
          Length = 559

 Score =  350 bits (898), Expect = 5e-94
 Identities = 175/264 (66%), Positives = 216/264 (81%), Gaps = 2/264 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFDRS--SQRDLVSWNGMIAAYAHHGHGNE 176
            SK+VYQD  FV SAL++MYSKCGEL IAR +FD    SQRDLV WNGMIAAYAHHG G E
Sbjct: 287  SKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGME 346

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L E+MQ  G KP+DV+YV +LSACSH+GLVD+GL YFDEL  + SI++REDH+ACLV
Sbjct: 347  AIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLV 406

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLCGRAGRL +A+DF ++LG  K S+ +WG LLA C+ HG+++IG+LAAK L + +P NA
Sbjct: 407  DLCGRAGRLKEAYDFIKQLGT-KASSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPENA 465

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GTY+LLSNIYAS  KW+EA++VRLKMK+KGLKKQPGCSWIEV NRVHVF+  DKSH Q+ 
Sbjct: 466  GTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWIEVGNRVHVFLARDKSHYQSN 525

Query: 717  PIYSLLKDLHFKMKRAGYVPHDKY 788
             IYSL+ D+H +MK A +VP++ +
Sbjct: 526  LIYSLVHDIHAEMK-AEHVPNNDF 548



 Score = 68.2 bits (165), Expect = 5e-09
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 3/205 (1%)
 Frame = +3

Query: 39  SALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGLK 218
           + +I  Y K  E+  A ++F+R  +R++VSWN +IAA    G   EA    +EM K    
Sbjct: 73  NTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKR--- 129

Query: 219 PDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLCGRAGRLDKAFD 398
            D +++  ++   + SG VD+  + FD +     +      +  +V    +  RLD+AFD
Sbjct: 130 -DVISWTTMVMGLARSGRVDEARKVFDRMPERNVVS-----WNAMVTGYAKNMRLDEAFD 183

Query: 399 FAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLL--EVEPSNAGTYMLLSNIYAS 572
             ER+   +++   W  ++      G I+ G+LA  R +  E+   N  ++  +   Y  
Sbjct: 184 LFERMP--ERNLSSWNTMIT-----GFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQ 236

Query: 573 AGKWKEAAKVRLKM-KDKGLKKQPG 644
            G+ + A KV ++M KD G +   G
Sbjct: 237 EGESESALKVFVEMIKDGGARPNEG 261



 Score = 64.7 bits (156), Expect = 6e-08
 Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 1/147 (0%)
 Frame = +3

Query: 39  SALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQK-SGL 215
           + +I+ + + GEL  AR +F+   ++++VSW  MI  Y   G    A+ +  EM K  G 
Sbjct: 197 NTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGA 256

Query: 216 KPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLCGRAGRLDKAF 395
           +P++ T+V VL ACS    + +G +    L+     + R    + L+++  + G L  A 
Sbjct: 257 RPNEGTFVNVLGACSDMAGLGEG-QQVHLLISKSVYQDRTFVASALLNMYSKCGELSIAR 315

Query: 396 DFAERLGLFKQSACVWGALLACCSFHG 476
              + + + ++   +W  ++A  + HG
Sbjct: 316 KIFDDVVISQRDLVLWNGMIAAYAHHG 342


>ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  350 bits (897), Expect = 7e-94
 Identities = 173/262 (66%), Positives = 211/262 (80%), Gaps = 2/262 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFDRSS--QRDLVSWNGMIAAYAHHGHGNE 176
            SKTVYQ+   V SALI+MYSKCGEL +AR +FD  S   RD+VSWNGMIAAYAHHGHG++
Sbjct: 378  SKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHK 437

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L +EMQ  G +PD+VTY+ +LSACSH+GLVD+GL+ F+ LV + SI++REDH+ CLV
Sbjct: 438  AISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLV 497

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DL GRAGRL +AFDF + L + K SA VW ALLA C+ HG+I +GKL A++LLE EP NA
Sbjct: 498  DLFGRAGRLQEAFDFIKGLEV-KPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENA 556

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GTY++LSNIYAS GKW+EAA VR+KMKDKGLKKQPGCSWIEV N VHVFVVGD SH + +
Sbjct: 557  GTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSHREFE 616

Query: 717  PIYSLLKDLHFKMKRAGYVPHD 782
             IY LL DLH KMK+ G+  ++
Sbjct: 617  NIYLLLHDLHTKMKKIGHTLYE 638


>ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
            mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  350 bits (897), Expect = 7e-94
 Identities = 173/262 (66%), Positives = 211/262 (80%), Gaps = 2/262 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFDRSS--QRDLVSWNGMIAAYAHHGHGNE 176
            SKTVYQ+   V SALI+MYSKCGEL +AR +FD  S   RD+VSWNGMIAAYAHHGHG++
Sbjct: 378  SKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHK 437

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L +EMQ  G +PD+VTY+ +LSACSH+GLVD+GL+ F+ LV + SI++REDH+ CLV
Sbjct: 438  AISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLV 497

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DL GRAGRL +AFDF + L + K SA VW ALLA C+ HG+I +GKL A++LLE EP NA
Sbjct: 498  DLFGRAGRLQEAFDFIKGLEV-KPSASVWAALLAGCNVHGHIDLGKLTAEKLLETEPENA 556

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GTY++LSNIYAS GKW+EAA VR+KMKDKGLKKQPGCSWIEV N VHVFVVGD SH + +
Sbjct: 557  GTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFVVGDNSHREFE 616

Query: 717  PIYSLLKDLHFKMKRAGYVPHD 782
             IY LL DLH KMK+ G+  ++
Sbjct: 617  NIYLLLHDLHTKMKKIGHTLYE 638


>ref|XP_007028547.1| Pentatricopeptide repeat (PPR) superfamily protein, putative isoform
            1 [Theobroma cacao] gi|590635100|ref|XP_007028548.1|
            Pentatricopeptide repeat (PPR) superfamily protein,
            putative isoform 1 [Theobroma cacao]
            gi|508717152|gb|EOY09049.1| Pentatricopeptide repeat
            (PPR) superfamily protein, putative isoform 1 [Theobroma
            cacao] gi|508717153|gb|EOY09050.1| Pentatricopeptide
            repeat (PPR) superfamily protein, putative isoform 1
            [Theobroma cacao]
          Length = 631

 Score =  349 bits (895), Expect = 1e-93
 Identities = 172/268 (64%), Positives = 210/268 (78%), Gaps = 2/268 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFDRS--SQRDLVSWNGMIAAYAHHGHGNE 176
            +KT+YQ S  V SA+I+MYSKCGEL  AR MFD    SQRD+VSWNGMIAAYAHHG G E
Sbjct: 360  AKTIYQCSEIVVSAIINMYSKCGELNAARRMFDDGLISQRDVVSWNGMIAAYAHHGCGGE 419

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L ++M   G KP+  TYV +LSACSHSG+V+ GLRYFDELV + SI+V+EDHYACLV
Sbjct: 420  AISLFKKMSGFGFKPNGATYVALLSACSHSGMVEDGLRYFDELVRDKSIQVKEDHYACLV 479

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLC RAG+L +AF+F  RLG  K SA +W ALLA C  HG++ +GKLAA+++LE EP N 
Sbjct: 480  DLCSRAGKLKEAFEFIMRLGT-KPSASIWEALLAGCHVHGDVNLGKLAAEKILETEPENV 538

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GT+MLLSNIYAS GKW++A KVRLKMK+KGLKKQPGCSWIEV N+VHVFV G KS   A 
Sbjct: 539  GTHMLLSNIYASRGKWRDAGKVRLKMKNKGLKKQPGCSWIEVGNKVHVFVAGAKSRCHAN 598

Query: 717  PIYSLLKDLHFKMKRAGYVPHDKYKMEE 800
             +Y LL +LH KM++AG +P++ Y  ++
Sbjct: 599  LLYPLLCELHAKMRKAGSIPNNDYMKDD 626



 Score = 64.3 bits (155), Expect = 7e-08
 Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 41/236 (17%)
 Frame = +3

Query: 39  SALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQ-KSGL 215
           +A+I+ + + GEL  A  +FD+  ++++VSW  MI  Y       EA+ +  +M  + G+
Sbjct: 270 NAMITGFIQNGELKRAEKLFDKVPRKNVVSWTTMITGYVQDEQSEEALKIFSKMMAEDGV 329

Query: 216 KPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLCGRAGRLDKA- 392
           KP++ T+V VLSACS    + +G +   + +     +  E   + ++++  + G L+ A 
Sbjct: 330 KPNEGTFVSVLSACSDLAGLFEG-QQVHQTLAKTIYQCSEIVVSAIINMYSKCGELNAAR 388

Query: 393 --FD-------------------------------FAERLGL-FKQSACVWGALLACCSF 470
             FD                               F +  G  FK +   + ALL+ CS 
Sbjct: 389 RMFDDGLISQRDVVSWNGMIAAYAHHGCGGEAISLFKKMSGFGFKPNGATYVALLSACSH 448

Query: 471 HGNIKIG-----KLAAKRLLEVEPSNAGTYMLLSNIYASAGKWKEAAKVRLKMKDK 623
            G ++ G     +L   + ++V+  +   Y  L ++ + AGK KEA +  +++  K
Sbjct: 449 SGMVEDGLRYFDELVRDKSIQVKEDH---YACLVDLCSRAGKLKEAFEFIMRLGTK 501


>ref|XP_006827212.1| hypothetical protein AMTR_s00010p00259620 [Amborella trichopoda]
           gi|548831641|gb|ERM94449.1| hypothetical protein
           AMTR_s00010p00259620 [Amborella trichopoda]
          Length = 330

 Score =  347 bits (891), Expect = 3e-93
 Identities = 164/258 (63%), Positives = 211/258 (81%)
 Frame = +3

Query: 3   SKTVYQDSVFVESALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAI 182
           SKT + + V+V+SALISMY KCG++ +A+++FD + ++D++SWNGMIAAYAHHG G E+I
Sbjct: 68  SKTHWHEDVYVQSALISMYEKCGQIDLAKEIFDCTKKKDVISWNGMIAAYAHHGMGLESI 127

Query: 183 LLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDL 362
            L E M+  G +PDDVTYVGVLSACSHSGLV +GL Y+D +V  G++ VRE+HYAC+VDL
Sbjct: 128 RLFEAMRSLGFEPDDVTYVGVLSACSHSGLVTEGLEYYDSMVETGNVLVREEHYACVVDL 187

Query: 363 CGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNAGT 542
            GRAGRL++A  F   L   +  AC+WGALL  CS HG++KIG+ A+KRL+E+E  NAGT
Sbjct: 188 LGRAGRLEEAVSFILDL-KNRPGACIWGALLGACSVHGDVKIGEFASKRLIEIERENAGT 246

Query: 543 YMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAKPI 722
           YMLL+NIYA+ G+W+ AA VRLKM+++GLKKQPGCSWIEV+NRV+VFVVGDKSH +A+ I
Sbjct: 247 YMLLANIYATVGRWRAAAGVRLKMREEGLKKQPGCSWIEVKNRVNVFVVGDKSHEKAERI 306

Query: 723 YSLLKDLHFKMKRAGYVP 776
           YSLLK L+  M RAGYVP
Sbjct: 307 YSLLKGLYRHMMRAGYVP 324


>gb|EMT01545.1| hypothetical protein F775_52571 [Aegilops tauschii]
          Length = 911

 Score =  338 bits (867), Expect = 2e-90
 Identities = 162/263 (61%), Positives = 204/263 (77%)
 Frame = +3

Query: 6    KTVYQDSVFVESALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAIL 185
            KT +Q   F+ES L+++Y+KCGE+ +AR +FD S ++D++SWNG+IAAYAHHG G EAI 
Sbjct: 333  KTPFQFDNFIESTLMNLYAKCGEIRLARKVFDLSGEKDVISWNGIIAAYAHHGAGVEAIA 392

Query: 186  LMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLC 365
            L E+MQ++G KP+DVTYVG+LSACSHSGLVD+GLR F+ +  + SI VR++HY CL+DLC
Sbjct: 393  LYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDQSIAVRDEHYTCLIDLC 452

Query: 366  GRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNAGTY 545
             RAGRLD A      L L   S+ VW ALL  C+ HGN  IG LAA+ LLE EP NAGTY
Sbjct: 453  SRAGRLDDAKRLINGLELKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDNAGTY 512

Query: 546  MLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAKPIY 725
             LLSNIYASAGKWKEAAK+R +M D+GLKKQPGCSWIE+ N+VHVFV  DKSHS+++ IY
Sbjct: 513  TLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIELANKVHVFVARDKSHSESELIY 572

Query: 726  SLLKDLHFKMKRAGYVPHDKYKM 794
            SLL+D+H  M+ AG  P D  ++
Sbjct: 573  SLLQDIHHMMRMAGSDPRDHMQL 595


>ref|XP_004498123.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At2g35030, mitochondrial-like [Cicer arietinum]
          Length = 665

 Score =  338 bits (866), Expect = 3e-90
 Identities = 170/262 (64%), Positives = 204/262 (77%), Gaps = 2/262 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFDR--SSQRDLVSWNGMIAAYAHHGHGNE 176
            SKTV+Q++  V SALI+MYSKCGEL  AR MFD   S Q DL+SWNGMIAAYAHHG G E
Sbjct: 361  SKTVFQENNHVVSALINMYSKCGELQAARKMFDDGLSGQMDLISWNGMIAAYAHHGSGTE 420

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L  +M + G + +DVT+VG+L+ACSH+GLV++GL+YFDEL+ N  I+VREDHY CL+
Sbjct: 421  AISLYNKMVELGFQANDVTFVGLLTACSHAGLVEEGLKYFDELLENRYIQVREDHYTCLI 480

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLCGRAGRL +AF+  E LG    S  +W ALLA C+ HGN  IGKL A ++L++EP NA
Sbjct: 481  DLCGRAGRLKEAFNVIEGLGK-DASLTIWAALLAGCNVHGNADIGKLVADKILKIEPQNA 539

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
             TY LLSN+YAS G  KEAA VR+KMKDKGLKKQPGCSWIEV N V VFVVGDKSHSQ++
Sbjct: 540  ATYSLLSNMYASVGXXKEAANVRMKMKDKGLKKQPGCSWIEVGNTVQVFVVGDKSHSQSE 599

Query: 717  PIYSLLKDLHFKMKRAGYVPHD 782
             +  LL DLH KMK+AG +P D
Sbjct: 600  MLGYLLLDLHTKMKKAGDIPED 621



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 3/205 (1%)
 Frame = +3

Query: 39  SALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGLK 218
           + +I  Y++ G    A D+F R  +R++VSWN +I A AH G  ++A  +  +MQ+    
Sbjct: 147 NTMIDGYARNGRTQEALDLFRRMPERNVVSWNTIITALAHSGRIDDAQGIFSKMQER--- 203

Query: 219 PDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLCGRAGRLDKAFD 398
            D V++  +++  S +G +D     FD +     +      +  ++    + GRLD+A  
Sbjct: 204 -DVVSWTTMVAGLSKNGRIDDARELFDRMPVRNVVS-----WNAMITGYAQNGRLDEALK 257

Query: 399 FAERLGLFKQSACVWGALLACCSFHGNIKIGKL--AAKRLLEVEPSNAGTYMLLSNIYAS 572
             ER+   ++    W  ++      G I+ G L  A K   E+   N  T+  +   Y  
Sbjct: 258 LFERMP--ERDMPSWNTMIT-----GFIQNGDLNRAEKLFDEMPQKNVITWTSMMTGYVQ 310

Query: 573 AGKWKEAAKVRLKMK-DKGLKKQPG 644
            G  +EA K+  KM+ + GLK   G
Sbjct: 311 HGLSEEALKIFNKMQANDGLKPTTG 335


>ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
            gi|241916012|gb|EER89156.1| hypothetical protein
            SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  337 bits (865), Expect = 3e-90
 Identities = 161/265 (60%), Positives = 205/265 (77%)
 Frame = +3

Query: 6    KTVYQDSVFVESALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAIL 185
            KT +Q   FVESAL+++Y+KCGE+G+AR +FD S ++DL+SWNG+IAAYAHHG G EAIL
Sbjct: 354  KTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIL 413

Query: 186  LMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLC 365
            L E+MQ++G +P+DVTYV +LSACSHSGLVD+GL+ F+ +V + SI VR++HY CL+DLC
Sbjct: 414  LYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLC 473

Query: 366  GRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNAGTY 545
             RAGRLD A      L +   S  VW ALL  C+ HGN  IG LAA+ LL+ EP NAGTY
Sbjct: 474  SRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTY 533

Query: 546  MLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAKPIY 725
             LLSNIYASAGKWKEAA++R +M ++GLKKQPGCSWIEV N+VHVFV  DKSHS++  IY
Sbjct: 534  TLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIY 593

Query: 726  SLLKDLHFKMKRAGYVPHDKYKMEE 800
             LL+++H  M+  G VP D   ++E
Sbjct: 594  GLLQNIHHMMRIVGTVPSDLVHVDE 618



 Score = 58.5 bits (140), Expect = 4e-06
 Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 4/181 (2%)
 Frame = +3

Query: 72  ELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGLKPDDVTYVGVLS 251
           +L  AR++FD   +R++V+W  M+  Y        A+ L   M  +G +P+ VT++G L 
Sbjct: 275 DLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALD 334

Query: 252 ACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDL---CGRAGRLDKAFDFAERLGLF 422
           ACS    + +G +   +++   + +      + L+++   CG  G   K FD +    L 
Sbjct: 335 ACSDLAALCEG-KQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLI 393

Query: 423 KQSACVWGALLACCSFHG-NIKIGKLAAKRLLEVEPSNAGTYMLLSNIYASAGKWKEAAK 599
                 W  ++A  + HG  I+   L  K        N  TY++L +  + +G   E  K
Sbjct: 394 S-----WNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLK 448

Query: 600 V 602
           +
Sbjct: 449 I 449


>dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  335 bits (858), Expect = 2e-89
 Identities = 161/263 (61%), Positives = 203/263 (77%)
 Frame = +3

Query: 6    KTVYQDSVFVESALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAIL 185
            KT +Q   F+ES+L+ +Y+KCGE+ +AR +FD S ++D++SWNGMIAAYAHHG G EAI 
Sbjct: 351  KTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIA 410

Query: 186  LMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLC 365
            L E+MQ++  KP+DVTYVG+LSACSHSGLVD+GLR F+ +  + SI VR++HY+CL+DLC
Sbjct: 411  LYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLC 470

Query: 366  GRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNAGTY 545
             RAGRLD A      L L   S+ VW ALL  C+ HGN  IG LAA+ LLE EP NAGTY
Sbjct: 471  SRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDNAGTY 530

Query: 546  MLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAKPIY 725
             LLSNIYASAGKWKEAAK+R +M D+GLKKQPGCSWIE+ N+VHVFV  DKSHS+++ IY
Sbjct: 531  TLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIELANKVHVFVARDKSHSESELIY 590

Query: 726  SLLKDLHFKMKRAGYVPHDKYKM 794
            SLL+D+H  M+  G  P D  ++
Sbjct: 591  SLLQDIHHMMRMDGSDPRDHMQL 613



 Score = 57.8 bits (138), Expect = 7e-06
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 1/183 (0%)
 Frame = +3

Query: 48  ISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGLKPDD 227
           I+  +  G +  AR +FDR+  RD+VSW  M+AAYA  G  +EA  L   + +   + + 
Sbjct: 46  IAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASAL---LHRPDARRNV 102

Query: 228 VTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLCGRAGRLDKAFDFAE 407
           VT+  +LS  + +  VD+    FD +     +      +  +++    AGR+  A    +
Sbjct: 103 VTWTALLSGYARARRVDEARALFDRMPERNVVS-----WNTMLEAYASAGRMGAACALFD 157

Query: 408 RLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPS-NAGTYMLLSNIYASAGKW 584
             G+  + A  W  LLA     G +      A+RL E  P  N  ++  + +  A +G  
Sbjct: 158 --GMPVRDAGSWNILLAALVRSGTMD----EARRLFERMPERNVMSWTTMISGLARSGSA 211

Query: 585 KEA 593
            EA
Sbjct: 212 DEA 214


>gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  331 bits (849), Expect = 2e-88
 Identities = 158/265 (59%), Positives = 203/265 (76%)
 Frame = +3

Query: 6    KTVYQDSVFVESALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAIL 185
            KT +Q   FV SAL+++Y+KCGE+G+AR +FD S ++DL+SWNG+IAAYAHHG G EAI 
Sbjct: 352  KTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIH 411

Query: 186  LMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLC 365
            L E+MQ +G +P+DVTYV +LSACSHSGLVD+GL+ F+ +V + SI VR++HY CL+DLC
Sbjct: 412  LYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLC 471

Query: 366  GRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNAGTY 545
             RAGRLD A      L +   S  VW ALL  C+ HGN  IG LAA+ L++ EP NAGTY
Sbjct: 472  SRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTY 531

Query: 546  MLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAKPIY 725
             LLSNIYASAGKWKEAA++R +M ++GLKKQPGCSWIEV N+VHVFV  DKSHS++  IY
Sbjct: 532  TLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIY 591

Query: 726  SLLKDLHFKMKRAGYVPHDKYKMEE 800
             LL+++H+ M+  G VP D   ++E
Sbjct: 592  GLLQNIHYMMRIVGTVPSDLVHVDE 616



 Score = 60.8 bits (146), Expect = 8e-07
 Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 4/190 (2%)
 Frame = +3

Query: 45  LISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGLKPD 224
           +I+ + +  +L  AR +FD   +R++V+W  M+  Y        ++ L   M  SG++P+
Sbjct: 264 MITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPN 323

Query: 225 DVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDL---CGRAGRLDKAF 395
            VT++G L ACS    + +G +   +++   + +V     + L+++   CG  G   K F
Sbjct: 324 QVTFLGALDACSDLATLCEG-KQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLF 382

Query: 396 DFAERLGLFKQSACVWGALLACCSFHG-NIKIGKLAAKRLLEVEPSNAGTYMLLSNIYAS 572
           D +    L       W  ++A  + HG  I+   L  K        N  TY++L +  + 
Sbjct: 383 DLSREKDLIS-----WNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSH 437

Query: 573 AGKWKEAAKV 602
           +G   E  K+
Sbjct: 438 SGLVDEGLKI 447


>gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  328 bits (842), Expect = 2e-87
 Identities = 162/263 (61%), Positives = 203/263 (77%)
 Frame = +3

Query: 6    KTVYQDSVFVESALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAIL 185
            KT +Q   F+ES L+++Y+KCGE+ +AR +FD S ++D++SWNGMIAAYAHHG G EAI 
Sbjct: 347  KTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIH 406

Query: 186  LMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLC 365
            L E+MQ+ G KP+DVTYVG+LSACSHSGLVD+GLR F+ +V + SI VR++HY CL+DLC
Sbjct: 407  LYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLC 466

Query: 366  GRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNAGTY 545
             RAGRL  A      L + + S+ VW ALL  C+ HGN  IG LAA+ LLE EP+NAGTY
Sbjct: 467  SRAGRLGDAKRLIHFLKV-EPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTY 525

Query: 546  MLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAKPIY 725
             LL NIYASAGKWKEAAK+R +M D+GLKKQPGCSWIEVEN+VHVFV  DKSHS++  I 
Sbjct: 526  TLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKVHVFVSRDKSHSESDLIN 585

Query: 726  SLLKDLHFKMKRAGYVPHDKYKM 794
            SLL+D+H  M+ A  VP D  ++
Sbjct: 586  SLLQDIHDIMRMACTVPRDDMQL 608



 Score = 57.4 bits (137), Expect = 9e-06
 Identities = 53/245 (21%), Positives = 109/245 (44%), Gaps = 4/245 (1%)
 Frame = +3

Query: 45  LISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGLKPD 224
           +I+ + +  +L  A+D+FD+  +R++++W  M+  Y        A+ +   M   G++P+
Sbjct: 259 MITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPN 318

Query: 225 DVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDL---CGRAGRLDKAF 395
            VT++G + ACS+   + +G +   +++   S +      + L++L   CG      K F
Sbjct: 319 QVTFLGAVDACSNLAGLSEG-QQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVF 377

Query: 396 DFAERLGLFKQSACVWGALLACCSFHG-NIKIGKLAAKRLLEVEPSNAGTYMLLSNIYAS 572
           D ++     ++    W  ++A  + HG  ++   L  K   +    N  TY+ L +  + 
Sbjct: 378 DLSK-----EKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSH 432

Query: 573 AGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAKPIYSLLKDLHFK 752
           +G           + D+GL             R+  ++V D+S +     Y+ L DL  +
Sbjct: 433 SG-----------LVDEGL-------------RIFEYMVKDRSIAVRDEHYTCLIDLCSR 468

Query: 753 MKRAG 767
             R G
Sbjct: 469 AGRLG 473


>ref|XP_006340092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
            mitochondrial-like [Solanum tuberosum]
          Length = 641

 Score =  328 bits (841), Expect = 2e-87
 Identities = 163/262 (62%), Positives = 203/262 (77%), Gaps = 2/262 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFDRS--SQRDLVSWNGMIAAYAHHGHGNE 176
            +KT+YQ +  V SALI+MYSKCG++  AR +FD     QRDL+SWN MIAAY HHG G +
Sbjct: 364  NKTIYQKNEVVISALINMYSKCGDVATARKIFDDGLRGQRDLISWNVMIAAYTHHGFGRD 423

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L +EM + G KP+DVTYVG+L+ACSHSGLV++GL+YFDEL  + SI++REDHY CLV
Sbjct: 424  AINLFKEMLQLGFKPNDVTYVGLLAACSHSGLVEEGLKYFDELCRDDSIKLREDHYTCLV 483

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLCGRAGRL +A D  ERL    +SA +WGALL+ C+ HG+ + GKLAA +LL +E  + 
Sbjct: 484  DLCGRAGRLKEALDVIERLPR-TESAFIWGALLSGCNLHGDSETGKLAAIKLLGIEAKSP 542

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
            GTY+ LS + AS GKWKEAAK+R +MKD+GLKKQPGCSWI VENRVHVF+VGD SH + +
Sbjct: 543  GTYLSLSKLCASKGKWKEAAKLRTQMKDRGLKKQPGCSWIAVENRVHVFLVGDTSHYETE 602

Query: 717  PIYSLLKDLHFKMKRAGYVPHD 782
             I+SLL +LH KMKR G  P D
Sbjct: 603  VIHSLLGNLHMKMKRTGCPPVD 624



 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
 Frame = +3

Query: 39  SALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKS-GL 215
           + +I  + + GELG AR +FD+  QRD+VSW+ MI  Y   G   EA+    +MQ    +
Sbjct: 274 NTMIMGFIQNGELGRARILFDKMRQRDVVSWSTMINGYMQEGRSEEALRNFCDMQMDVWV 333

Query: 216 KPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDL---CGRAGRLD 386
           KP++ T+V VL ACS    + +G++   +++     +  E   + L+++   CG      
Sbjct: 334 KPNEGTFVSVLGACSDLAGLSEGIQ-IHQVINKTIYQKNEVVISALINMYSKCGDVATAR 392

Query: 387 KAFDFAERLGLFKQSACVWGALLACCSFHG 476
           K FD   R    ++    W  ++A  + HG
Sbjct: 393 KIFDDGLR---GQRDLISWNVMIAAYTHHG 419



 Score = 63.9 bits (154), Expect = 1e-07
 Identities = 50/197 (25%), Positives = 100/197 (50%), Gaps = 2/197 (1%)
 Frame = +3

Query: 39  SALISMYSKCGELGIARDMFDRS-SQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGL 215
           +A+IS Y +CG++  AR++FDR+ ++RD+V+W  M+AAYA      EA +L  EM +  +
Sbjct: 87  TAMISGYIRCGKIDKARELFDRTDAKRDVVTWTAMLAAYARTNRILEAEMLFNEMPEKNV 146

Query: 216 KPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLCGRAGRLDKAF 395
               V++  ++   + +G +DKGL  F ++     +      +  ++    R GR+++A 
Sbjct: 147 ----VSWNSLIDGYARNGRIDKGLELFWKMRERNVVS-----WNMVIAGLARNGRINEAR 197

Query: 396 DFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPS-NAGTYMLLSNIYAS 572
              +++   +++   W  ++A  S +G +      A+ L +  P  N  ++  +   Y  
Sbjct: 198 VLFDQMP--EKNVVSWTTMIAGLSRNGRVD----EARTLFDRTPERNVVSWNAMITGYTQ 251

Query: 573 AGKWKEAAKVRLKMKDK 623
             K  EA ++   M +K
Sbjct: 252 NSKLDEAFELFEMMPEK 268


>ref|XP_004966624.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
            mitochondrial-like [Setaria italica]
          Length = 618

 Score =  327 bits (838), Expect = 5e-87
 Identities = 157/265 (59%), Positives = 201/265 (75%)
 Frame = +3

Query: 6    KTVYQDSVFVESALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAIL 185
            KT +Q   FVESAL+++YSKCGE+G+AR +FD S ++DL+SWNG+IAAYAHHG   EAI 
Sbjct: 351  KTAFQFDTFVESALMNVYSKCGEIGLARKLFDVSREKDLISWNGIIAAYAHHGVALEAIR 410

Query: 186  LMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLC 365
            L ++MQ++G KP+DVTYV +LSACSHSGLVD GL+ F+ +V + S+ VR++HY  L+DLC
Sbjct: 411  LYDKMQENGYKPNDVTYVVLLSACSHSGLVDDGLKIFESMVKDRSVAVRDEHYTSLIDLC 470

Query: 366  GRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNAGTY 545
             RAGRLD A      L +   S  VW ALL  C+ HGN+ IG LAA+ LLE EP NAGTY
Sbjct: 471  SRAGRLDDAKRLIHCLKIKPASGSVWSALLGGCNAHGNVSIGNLAARSLLEAEPDNAGTY 530

Query: 546  MLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAKPIY 725
             LLSNIYASAGKWKEAA++R +M ++GLKKQPGCSWIEV N+VH+FV  DKSHS+++ I 
Sbjct: 531  TLLSNIYASAGKWKEAAQIRSEMNNRGLKKQPGCSWIEVANKVHIFVSRDKSHSESELIN 590

Query: 726  SLLKDLHFKMKRAGYVPHDKYKMEE 800
             L++D+H  M+  G VP D    +E
Sbjct: 591  GLVQDIHHMMRIVGTVPTDNMLFDE 615



 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 5/200 (2%)
 Frame = +3

Query: 45  LISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGLKPD 224
           +I+ + +  +L  AR++FD++ +R++V+W  M+  Y        A+ L   M   G+ P+
Sbjct: 263 MINGFIQNKDLKRARELFDKTPERNVVTWTTMMKGYLQGMQSELALRLFNGMLTEGVTPN 322

Query: 225 DVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDL---CGRAGRLDKAF 395
            VT++G L ACS+   + +G +   +++   + +      + L+++   CG  G   K F
Sbjct: 323 KVTFLGALDACSNLAALCEG-QQVHQMICKTAFQFDTFVESALMNVYSKCGEIGLARKLF 381

Query: 396 DFAERLGLFKQSACVWGALLACCSFHG-NIKIGKLAAKRLLEVEPSNAGTYMLLSNIYAS 572
           D +    L       W  ++A  + HG  ++  +L  K        N  TY++L +  + 
Sbjct: 382 DVSREKDLIS-----WNGIIAAYAHHGVALEAIRLYDKMQENGYKPNDVTYVVLLSACSH 436

Query: 573 AGKWKEAAKVRLKM-KDKGL 629
           +G   +  K+   M KD+ +
Sbjct: 437 SGLVDDGLKIFESMVKDRSV 456


>ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355478803|gb|AES60006.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  325 bits (834), Expect = 1e-86
 Identities = 161/255 (63%), Positives = 199/255 (78%), Gaps = 2/255 (0%)
 Frame = +3

Query: 3    SKTVYQDSVFVESALISMYSKCGELGIARDMFDR--SSQRDLVSWNGMIAAYAHHGHGNE 176
            SKTV+Q+S +V SALI+MYSKCG+  +A+ MFD   S   DL++WNGMIAAYAHHG+GNE
Sbjct: 357  SKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNE 416

Query: 177  AILLMEEMQKSGLKPDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLV 356
            AI L  +MQ+ G + +DVTYVG+L+ACSH+GL D+G +YFDEL+ N  I+VREDHY CL+
Sbjct: 417  AINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQVREDHYTCLI 476

Query: 357  DLCGRAGRLDKAFDFAERLGLFKQSACVWGALLACCSFHGNIKIGKLAAKRLLEVEPSNA 536
            DLCGRAGRLD+A +  E LG  + S  +WGALLA CS HGN  IGKL A ++L++EP NA
Sbjct: 477  DLCGRAGRLDEALNIIEGLGK-EVSLSLWGALLAGCSVHGNADIGKLVADKVLKMEPENA 535

Query: 537  GTYMLLSNIYASAGKWKEAAKVRLKMKDKGLKKQPGCSWIEVENRVHVFVVGDKSHSQAK 716
             TY+L SN+YAS G  +EAA VR+KMK KGLKKQPGCSWI+V N V VFVV DKSHSQ +
Sbjct: 536  DTYLLASNMYASVGMREEAANVRMKMKKKGLKKQPGCSWIDVGNTVQVFVVNDKSHSQFE 595

Query: 717  PIYSLLKDLHFKMKR 761
             +  LL DLH KMK+
Sbjct: 596  MLKYLLLDLHTKMKK 610



 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 3/205 (1%)
 Frame = +3

Query: 39  SALISMYSKCGELGIARDMFDRSSQRDLVSWNGMIAAYAHHGHGNEAILLMEEMQKSGLK 218
           + +I  Y++ G    A D+F R  +R++VSWN ++ A AH G  ++A  L  EM++    
Sbjct: 143 NTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRER--- 199

Query: 219 PDDVTYVGVLSACSHSGLVDKGLRYFDELVGNGSIEVREDHYACLVDLCGRAGRLDKAFD 398
            D V++  +++  S +G VD     FD++     +      +  ++    + GR D+A  
Sbjct: 200 -DVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVS-----WNAMIAGYAQNGRFDEALK 253

Query: 399 FAERLGLFKQSACVWGALLACCSFHGNIKIGKL-AAKRLLEVEP-SNAGTYMLLSNIYAS 572
             ER+   ++    W  ++      G I+ G L  A++L    P  N  T+  +   Y  
Sbjct: 254 LFERMP--ERDMPSWNTMVT-----GFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQ 306

Query: 573 AGKWKEAAKVRLKMK-DKGLKKQPG 644
            G  +EA K+  KM+ + GLK   G
Sbjct: 307 HGLSEEALKLFNKMQANDGLKPTTG 331