BLASTX nr result

ID: Cocculus23_contig00016257 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00016257
         (1476 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006490837.1| PREDICTED: uncharacterized protein LOC102624...   452   e-124
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]   409   e-111
emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]   387   e-105
ref|XP_006606762.1| PREDICTED: uncharacterized protein LOC102662...   383   e-103
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     375   e-101
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|...   375   e-101
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              374   e-101
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g...   372   e-100
gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum]       367   7e-99
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   367   7e-99
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   367   7e-99
gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group]     367   9e-99
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...   362   2e-97
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         361   4e-97
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   360   9e-97
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   355   4e-95
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  353   8e-95
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  353   8e-95
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   352   2e-94
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       351   5e-94

>ref|XP_006490837.1| PREDICTED: uncharacterized protein LOC102624555 [Citrus sinensis]
          Length = 821

 Score =  452 bits (1164), Expect = e-124
 Identities = 211/270 (78%), Positives = 240/270 (88%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHKTDDAT++A+LFFKEIVRLHGVPRSIVSDRD KFLS+FWK LW KLGTKL
Sbjct: 219  SKMAHFIPCHKTDDATSIANLFFKEIVRLHGVPRSIVSDRDAKFLSHFWKTLWGKLGTKL 278

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++TLLR +IQKNLK+WEECLP +EFAYNR VHS T FSPF
Sbjct: 279  LFSTTCHPQTDGQTEVVNRTLSTLLRAIIQKNLKTWEECLPHVEFAYNRTVHSATKFSPF 338

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            EIVYGFN          PIDER S+DGK+KAE V+QLHE+ +  IEK+ +QYA++ANKGR
Sbjct: 339  EIVYGFNPLTPLDLLPLPIDERASMDGKKKAEFVKQLHERTRQHIEKRTEQYATQANKGR 398

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            +++VF+PGDWVWVH+RKERFP +RRSKL PRGDGPFQV+ RIN+NAYKLDLPGEYNV AT
Sbjct: 399  KQVVFQPGDWVWVHMRKERFPAQRRSKLLPRGDGPFQVVARINDNAYKLDLPGEYNVIAT 458

Query: 754  FNITDLSPFDVGDDSRTNPFEERGNDAEQH 665
            FN++DLSPFDVG+DSRTNPFEERGND E H
Sbjct: 459  FNVSDLSPFDVGEDSRTNPFEERGND-ENH 487


>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
          Length = 1173

 Score =  409 bits (1052), Expect = e-111
 Identities = 196/275 (71%), Positives = 224/275 (81%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKM HFI CHKTDDAT++A+LFF++IVRLHG+PRSIVSDRDVKFLS FWKVLW KLGTKL
Sbjct: 885  SKMTHFISCHKTDDATHIANLFFRKIVRLHGIPRSIVSDRDVKFLSCFWKVLWGKLGTKL 944

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQ EVVNRT++TLLRT+IQKNLK+WE+CLPF EFAYNR VHSTT+FSPF
Sbjct: 945  LFSTTCHPQTDGQIEVVNRTLSTLLRTIIQKNLKNWEDCLPFTEFAYNRSVHSTTSFSPF 1004

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            EIVYGFN          P++E  SLD                   EKKN+QY +KANKGR
Sbjct: 1005 EIVYGFNPLTPLDLLPLPVNEMTSLD-------------------EKKNEQYVTKANKGR 1045

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            R+++FE GDWVWVH+RKERFP +R+SKL PRGDGPFQV+ERIN+NAYKLDL GEYN+SAT
Sbjct: 1046 RQVLFESGDWVWVHMRKERFPTRRQSKLHPRGDGPFQVLERINDNAYKLDLLGEYNISAT 1105

Query: 754  FNITDLSPFDVGDDSRTNPFEERGNDAEQHDLHVP 650
            F ++DLSPF+VGDDSRTNPFEERGND  Q     P
Sbjct: 1106 FKVSDLSPFNVGDDSRTNPFEERGNDENQQAFKDP 1140


>emb|CAN74973.1| hypothetical protein VITISV_001042 [Vitis vinifera]
          Length = 1281

 Score =  387 bits (993), Expect = e-105
 Identities = 186/275 (67%), Positives = 213/275 (77%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKM +FI CHK DDAT++A+LFF+EIVRLHGVPRSIVSDRDVKFLSYFWKVLW KLGTKL
Sbjct: 999  SKMTYFISCHKIDDATHIANLFFREIVRLHGVPRSIVSDRDVKFLSYFWKVLWRKLGTKL 1058

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++T                           VHSTTNFSPF
Sbjct: 1059 LFSTTCHPQTDGQTEVVNRTLSTF--------------------------VHSTTNFSPF 1092

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            EIVYGFN           ++E  SLDG++K EMV++LHE V+  IEKKN+QY SKANKG 
Sbjct: 1093 EIVYGFNPLTSLDLLPLXVNEMXSLDGEKKVEMVKKLHESVRKHIEKKNEQYVSKANKGX 1152

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
             +++FEPGDWVWVH+RKERFP +R SKL PRGDGPFQV+ERIN+NAYKLD+PGEYN+SAT
Sbjct: 1153 XQVLFEPGDWVWVHMRKERFPTRRXSKLHPRGDGPFQVLERINDNAYKLDIPGEYNISAT 1212

Query: 754  FNITDLSPFDVGDDSRTNPFEERGNDAEQHDLHVP 650
            FN++DLSPFDVGDDS TNPFEE+GND  Q     P
Sbjct: 1213 FNVSDLSPFDVGDDSXTNPFEEKGNDENQQAFKDP 1247


>ref|XP_006606762.1| PREDICTED: uncharacterized protein LOC102662828 [Glycine max]
          Length = 612

 Score =  383 bits (984), Expect = e-103
 Identities = 185/264 (70%), Positives = 216/264 (81%), Gaps = 1/264 (0%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SK+AHFIPC K DDA +VADLFFKEIVRLHG+PRSIVSDRD KFLS+FW+ LW K+GTKL
Sbjct: 349  SKIAHFIPCKKVDDACHVADLFFKEIVRLHGLPRSIVSDRDAKFLSHFWRTLWGKIGTKL 408

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVN+T+ TLLRTV++KNLKSWE CLP +EFAYNR VHSTTN SPF
Sbjct: 409  LFSTTCHPQTDGQTEVVNKTLGTLLRTVLKKNLKSWEACLPHVEFAYNRTVHSTTNCSPF 468

Query: 1114 EIVYGFN-XXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKG 938
            EIVYGFN            I      D + KAE V++LHE+VK QIEKKN  YA +ANK 
Sbjct: 469  EIVYGFNPLTPLDLLPMPNITMFKHKDAQAKAEYVKKLHEQVKAQIEKKNASYARQANKS 528

Query: 937  RRRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSA 758
            R+++V EPGDWVWVHL+KERFP+ R+SKLQPRGDGPFQV+E+IN+NAYK+DLP EYNVSA
Sbjct: 529  RKKVVLEPGDWVWVHLKKERFPEHRKSKLQPRGDGPFQVLEKINDNAYKIDLPNEYNVSA 588

Query: 757  TFNITDLSPFDVGDDSRTNPFEER 686
            TFN++DLS FD   D  +  FE++
Sbjct: 589  TFNVSDLSLFDA--DGGSLGFEDK 610


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  375 bits (962), Expect = e-101
 Identities = 172/276 (62%), Positives = 219/276 (79%), Gaps = 3/276 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHK+DDA+++A LFF EIVRLHG+P++IVSDRD KFLSYFWK LWAKLGT+L
Sbjct: 1296 SKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRL 1355

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++ LLR +I+KNLK WEECLP +EFAYNR VHSTTN  PF
Sbjct: 1356 LFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPF 1415

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            E+VYGF           P+ ER  ++  ++A  V+++HEK K  IEK++  YA+ ANK R
Sbjct: 1416 EVVYGFKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKNR 1475

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            +++ FEPGD VWVHLRK+RFP KR+SKL PRGDGPF+V+ +IN+NAYK++LP +Y VS+T
Sbjct: 1476 KKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSST 1535

Query: 754  FNITDLSPF---DVGDDSRTNPFEERGNDAEQHDLH 656
            FN+ DL+PF   +  + SR+ PF+E  +D +   +H
Sbjct: 1536 FNVADLTPFFGLEDSESSRSTPFQEGEDDEDIPTVH 1571


>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 681

 Score =  375 bits (962), Expect = e-101
 Identities = 172/276 (62%), Positives = 219/276 (79%), Gaps = 3/276 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHK+DDA+++A LFF EIVRLHG+P++IVSDRD KFLSYFWK LWAKLGT+L
Sbjct: 264  SKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRL 323

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++ LLR +I+KNLK WEECLP +EFAYNR VHSTTN  PF
Sbjct: 324  LFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPF 383

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            E+VYGF           P+ ER  ++  ++A  V+++HEK K  IEK++  YA+ ANK R
Sbjct: 384  EVVYGFKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKNR 443

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            +++ FEPGD VWVHLRK+RFP KR+SKL PRGDGPF+V+ +IN+NAYK++LP +Y VS+T
Sbjct: 444  KKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSST 503

Query: 754  FNITDLSPF---DVGDDSRTNPFEERGNDAEQHDLH 656
            FN+ DL+PF   +  + SR+ PF+E  +D +   +H
Sbjct: 504  FNVADLTPFFGLEDSESSRSTPFQEGEDDEDIPTVH 539


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  374 bits (961), Expect = e-101
 Identities = 174/262 (66%), Positives = 215/262 (82%), Gaps = 1/262 (0%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHKTDDA ++A+LFF+E+VRLHG+P++IVSDRD KFLSYFWK LW+KLGTKL
Sbjct: 1484 SKMAHFIPCHKTDDAIHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKL 1543

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++TLLR +I+KNLK+WE+CLP +EFAYN  +HS + FSPF
Sbjct: 1544 LFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPF 1603

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            +IVYGFN          P+ ERVSLDGK+KAE+V+Q+HE+ K  IE+K  QYA  ANK R
Sbjct: 1604 QIVYGFNPTTPLDLMPLPLSERVSLDGKKKAELVQQIHEQAKKNIEEKTKQYAKHANKSR 1663

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            + ++F  GD VW+HLRKERFP +R+SKL  R DGPF+V++RIN NAY LDL G+YNVS +
Sbjct: 1664 KEVIFNEGDLVWIHLRKERFPKERKSKLMSRIDGPFKVLKRINNNAYSLDLQGKYNVSNS 1723

Query: 754  FNITDLSPFDVGD-DSRTNPFE 692
            FN+ DL PF   + D R+NPF+
Sbjct: 1724 FNVADLFPFIADNTDLRSNPFQ 1745


>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
            gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
            Japonica Group]
          Length = 681

 Score =  372 bits (956), Expect = e-100
 Identities = 172/276 (62%), Positives = 217/276 (78%), Gaps = 3/276 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHK+DDA+++A LFF EIVRLHG+P++IVSDRD KFLSYFWK LWAKLGT+L
Sbjct: 264  SKMAHFIPCHKSDDASHIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRL 323

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++ LLR +I+KNLK WEECLP +EFAYNR VHSTTN  PF
Sbjct: 324  LFSTTCHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPF 383

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            E+VYGF           P+ ER  ++  + A  V+++HEK K  IEK++  YA+ ANK R
Sbjct: 384  EVVYGFKPLAPIDLLPLPLQERSDMEASKHATYVKKIHEKTKEAIEKRSKYYAAWANKDR 443

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            +++ FEPGD VWVHLRK+RFP KR+SKL PRGDGPF+V+ +IN+NAYK++LP +Y VS T
Sbjct: 444  KKVTFEPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSPT 503

Query: 754  FNITDLSPF---DVGDDSRTNPFEERGNDAEQHDLH 656
            FN+ DL+PF   +  + SR+ PF+E  +D +   +H
Sbjct: 504  FNVADLTPFFGLEDSESSRSTPFQEGEDDEDIPTVH 539


>gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum]
          Length = 1096

 Score =  367 bits (942), Expect = 7e-99
 Identities = 166/269 (61%), Positives = 218/269 (81%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMA FIPC KT+DA++VADLF KE+V+LHG+PR+IVSDRD KFLS+FW++LW KLGTKL
Sbjct: 754  SKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKL 813

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFST+CHPQTDGQTEVVNRT+  +LR +++  L SWE+ LP +EFAYNR  HS+T  +PF
Sbjct: 814  LFSTSCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPF 873

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            E+VYGFN          P ++  +LDGK+KA+M++++HE+ ++ IEKKN + A + NKGR
Sbjct: 874  EVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGR 933

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            + ++F+PGD VWVH+RKERFP KR++KL PRG GP++V+ERI +NAYKLDLPGE+ VSAT
Sbjct: 934  KYVIFKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDNAYKLDLPGEFQVSAT 993

Query: 754  FNITDLSPFDVGDDSRTNPFEERGNDAEQ 668
            FN++DLS +D   DSRTN  +E GND+ Q
Sbjct: 994  FNVSDLSHYDADLDSRTNSLQEEGNDSIQ 1022


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  367 bits (942), Expect = 7e-99
 Identities = 166/269 (61%), Positives = 218/269 (81%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMA FIPC KT+DA++VADLF KE+V+LHG+PR+IVSDRD KFLS+FW++LW KLGTKL
Sbjct: 1246 SKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKL 1305

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFST+CHPQTDGQTEVVNRT+  +LR +++  L SWE+ LP +EFAYNR  HS+T  +PF
Sbjct: 1306 LFSTSCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPF 1365

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            E+VYGFN          P ++  +LDGK+KA+M++++HE+ ++ IEKKN + A + NKGR
Sbjct: 1366 EVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGR 1425

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            + ++F+PGD VWVH+RKERFP KR++KL PRG GP++V+ERI +NAYKLDLPGE+ VSAT
Sbjct: 1426 KYVIFKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDNAYKLDLPGEFQVSAT 1485

Query: 754  FNITDLSPFDVGDDSRTNPFEERGNDAEQ 668
            FN++DLS +D   DSRTN  +E GND+ Q
Sbjct: 1486 FNVSDLSHYDADLDSRTNSLQEEGNDSIQ 1514


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  367 bits (942), Expect = 7e-99
 Identities = 166/269 (61%), Positives = 218/269 (81%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMA FIPC KT+DA++VADLF KE+V+LHG+PR+IVSDRD KFLS+FW++LW KLGTKL
Sbjct: 1246 SKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKL 1305

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFST+CHPQTDGQTEVVNRT+  +LR +++  L SWE+ LP +EFAYNR  HS+T  +PF
Sbjct: 1306 LFSTSCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPF 1365

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            E+VYGFN          P ++  +LDGK+KA+M++++HE+ ++ IEKKN + A + NKGR
Sbjct: 1366 EVVYGFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGR 1425

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            + ++F+PGD VWVH+RKERFP KR++KL PRG GP++V+ERI +NAYKLDLPGE+ VSAT
Sbjct: 1426 KYVIFKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDNAYKLDLPGEFQVSAT 1485

Query: 754  FNITDLSPFDVGDDSRTNPFEERGNDAEQ 668
            FN++DLS +D   DSRTN  +E GND+ Q
Sbjct: 1486 FNVSDLSHYDADLDSRTNSLQEEGNDSIQ 1514


>gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1154

 Score =  367 bits (941), Expect = 9e-99
 Identities = 170/259 (65%), Positives = 213/259 (82%), Gaps = 2/259 (0%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPC+K+DDA++VADLFF+E+VRLHGVPR+IVSDRDVKF+SYFWK LWAKLGTKL
Sbjct: 895  SKMAHFIPCNKSDDASHVADLFFREVVRLHGVPRTIVSDRDVKFMSYFWKTLWAKLGTKL 954

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCH Q DGQ EVVNRT++ LLR +I+KNLK WE+CLP +EFAYNRVVHSTT  SPF
Sbjct: 955  LFSTTCHSQIDGQMEVVNRTLSMLLRMMIKKNLKEWEDCLPHVEFAYNRVVHSTTQLSPF 1014

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            E+VYGFN          P+ ER +++  ++A+ V+++HEK K  IE+    YA+KANK R
Sbjct: 1015 EVVYGFNPITPLDLLPLPLQERANMEATKRADYVKKMHEKTKETIERIIQSYAAKANKDR 1074

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            ++++F+PG+ VWVHLRK+RFP+KR+SKL P GDGPF+V+E+I +NAYK+DLPG+Y VS T
Sbjct: 1075 KKMLFQPGELVWVHLRKDRFPEKRKSKLMPHGDGPFRVLEKITDNAYKIDLPGDYTVSNT 1134

Query: 754  FNITDLSPF--DVGDDSRT 704
            FN+ DLSPF      DSRT
Sbjct: 1135 FNVVDLSPFFGTEETDSRT 1153


>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score =  362 bits (929), Expect = 2e-97
 Identities = 163/247 (65%), Positives = 204/247 (82%)
 Frame = -3

Query: 1417 DLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKLLFSTTCHPQTDGQTEVVNR 1238
            DLFFKE+VRLHG+PR+IVSDRD KFLS+FW++LW KLGTKLL+ST CHPQTDGQTEVVNR
Sbjct: 1035 DLFFKEVVRLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLYSTACHPQTDGQTEVVNR 1094

Query: 1237 TMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPFEIVYGFNXXXXXXXXXXPI 1058
            T+T LLR VI+KNLKSWEE LP++EFAYNR +HSTTN SPFE+ YGFN           +
Sbjct: 1095 TLTQLLRVVIRKNLKSWEESLPYVEFAYNRAIHSTTNMSPFEVAYGFNPLTPLDLIPLHV 1154

Query: 1057 DERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGRRRLVFEPGDWVWVHLRKER 878
            +++  +D  +KA+ +R+ H KV+ QIEKKN+QYA KANKGR+ ++F+PGDWVW+H  K R
Sbjct: 1155 NDKECVDAAKKAQGIREFHSKVRAQIEKKNEQYAQKANKGRKAIIFKPGDWVWIHYSKNR 1214

Query: 877  FPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSATFNITDLSPFDVGDDSRTNP 698
            FP++R+SKL PRGDGPFQV+ERIN+NAYKLDL GE++VS+TFN+ DL+PFD   DS TN 
Sbjct: 1215 FPNQRKSKLMPRGDGPFQVLERINDNAYKLDLRGEHSVSSTFNVADLAPFDF-SDSGTNL 1273

Query: 697  FEERGND 677
            F+E  +D
Sbjct: 1274 FQEGEDD 1280


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  361 bits (927), Expect = 4e-97
 Identities = 172/280 (61%), Positives = 216/280 (77%), Gaps = 5/280 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHKTDDAT++ADLFF+EIVRLHGVP +IVSDRD KFLS+FW+ LWAKLGTKL
Sbjct: 1296 SKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKL 1355

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++T+LR V++KN+K WE+CLP IEFAYNR +HSTT   PF
Sbjct: 1356 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPF 1415

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            +IVYG            P  E+++ D  R+AE++ +LHE  K  IE+ N +Y   ++KGR
Sbjct: 1416 QIVYGLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENIERMNARYKFASDKGR 1475

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            + + FEPGD VW+HLRKERFP+ R+SKL PR DGPF+V+E+IN+NAY+LDLP ++ VS T
Sbjct: 1476 KEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDNAYRLDLPADFGVSPT 1535

Query: 754  FNITDLSPF---DVGDDSRTNPFEERGNDAEQH--DLHVP 650
            FNI DL P+   +V  +SRT   +E  ND + H  D  +P
Sbjct: 1536 FNIADLKPYLGEEVELESRTTQMQEGENDEDIHTTDASIP 1575


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  360 bits (924), Expect = 9e-97
 Identities = 170/271 (62%), Positives = 210/271 (77%), Gaps = 3/271 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHKTDDA+++ADLFF+EIVRLHGVP +IVSDRD KFLS+FW+ LWAKLGTKL
Sbjct: 1293 SKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKL 1352

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++T+LR V++KN+K WEECLP IEFAYNR +HSTT   PF
Sbjct: 1353 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPF 1412

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            +IVYG            P  E+++ D K++AE++ +LHE  K  IE+ N +Y    +KGR
Sbjct: 1413 QIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKGR 1472

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            R L FEPGD VW+HLRKERFPD R+SKL PR DGPF+V+ +INENAYK+DLP ++ VS T
Sbjct: 1473 RELTFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADFGVSPT 1532

Query: 754  FNITDLSPFDVGDD---SRTNPFEERGNDAE 671
            FN+ DL P+   +D   SRT   +E  +D +
Sbjct: 1533 FNVADLKPYLGEEDELESRTTQMQEGEDDED 1563



 Score =  156 bits (394), Expect = 3e-35
 Identities = 92/250 (36%), Positives = 140/250 (56%), Gaps = 4/250 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            +K+A FIP   T     +A+L+F  IV LHGVP+ IVSDR+ +F S+FWK L  +LGT+L
Sbjct: 2115 TKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRL 2174

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
             FST  HPQTDGQTE +N+ +  +L   +    K+W++ LP+ EF+YN    ++   +P+
Sbjct: 2175 NFSTAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPY 2234

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAE-MVRQLHEKVKIQIEKKNDQYASKANKG 938
            E +YG               +    D  R+AE  VR + + +K+   ++     S A+  
Sbjct: 2235 EALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRTIWDNLKVAQSRQK----SYADNR 2290

Query: 937  RRRLVFEPGDWVWVHLRKERFPDK--RRSKLQPRGDGPFQVIERINENAYKLDLPGEY-N 767
            RR L F   D+V++ +   R   +   + KL PR  GPF++I R  E AY+L+LP    N
Sbjct: 2291 RRNLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRFVGPFRIIARRGEVAYQLELPASLGN 2350

Query: 766  VSATFNITDL 737
            V   F+++ L
Sbjct: 2351 VHDVFHVSQL 2360


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  355 bits (910), Expect = 4e-95
 Identities = 168/278 (60%), Positives = 211/278 (75%), Gaps = 3/278 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHK+DDA NVADLFF+EI+RLHGVP +IVSDRD KFLS+FW+ LWAKLG KL
Sbjct: 1337 SKMAHFIPCHKSDDAVNVADLFFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKLGNKL 1396

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++T+LR V++ N K WEECLP IEFAYNR +HSTT   PF
Sbjct: 1397 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKMCPF 1456

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            EIVYGF           P  E+V+ D K ++E++ ++HE  K  IE+ N +Y    +KGR
Sbjct: 1457 EIVYGFLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTKENIERMNAKYKLARDKGR 1516

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            + +VF PGD VW+HLRK+RFP+ R+SKL PR DGPF+V+E+IN+NAYKL+LP ++ VS T
Sbjct: 1517 KHVVFAPGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEKINDNAYKLELPADFGVSPT 1576

Query: 754  FNITDLSPFDVGDD---SRTNPFEERGNDAEQHDLHVP 650
            FNI DL P+   +D   SRT  F+E  +D + + +  P
Sbjct: 1577 FNIADLKPYLGEEDELPSRTTSFQEGEDDEDINTIVTP 1614


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  353 bits (907), Expect = 8e-95
 Identities = 167/278 (60%), Positives = 211/278 (75%), Gaps = 3/278 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHK+DDA NVADLFF+EI+RLHGVP +IVSDRD KFLS+FW+ LWAKLGTKL
Sbjct: 1352 SKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKL 1411

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNR+++T+LR V++ N+K WEECLP IEFAYNR +HSTT   PF
Sbjct: 1412 LFSTTCHPQTDGQTEVVNRSLSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPF 1471

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            EIVYGF           P  E+V+ D K +AE++ ++HE  K  IE+ N +Y    +KGR
Sbjct: 1472 EIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGR 1531

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            + +VF PGD VW+HLRK+RFPD R+SKL PR  GPF+V+E+IN+NAY+L+LP ++ VS T
Sbjct: 1532 KHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPADFGVSPT 1591

Query: 754  FNITDLSPFDVGDD---SRTNPFEERGNDAEQHDLHVP 650
            FNI DL P+   +D   SRT   +E  +D + + +  P
Sbjct: 1592 FNIADLKPYLGEEDELPSRTTSVQEGEDDEDINTIATP 1629


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  353 bits (907), Expect = 8e-95
 Identities = 168/278 (60%), Positives = 211/278 (75%), Gaps = 3/278 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHK+DDA NVADLFF+EI+RLHGVP +IVSDRD KFLS+FW+ LWAKLGTKL
Sbjct: 1349 SKMAHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKL 1408

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNR+++T+LR V++ NLK WEECLP IEFAYNR +HSTT   PF
Sbjct: 1409 LFSTTCHPQTDGQTEVVNRSLSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPF 1468

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            EIVYGF           P  E+V+ D K +AE++ ++HE  K  IE+ N +Y    +KGR
Sbjct: 1469 EIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTKENIERMNARYKLAGDKGR 1528

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            + +VF PGD VW+HLRK+RFPD R+SKL PR  GPF+V+E+IN+NAY+L+LP ++ VS T
Sbjct: 1529 KHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLELPXDFGVSPT 1588

Query: 754  FNITDLSPFDVGDD---SRTNPFEERGNDAEQHDLHVP 650
            FNI DL P+   +D   SRT   +E  +D + + +  P
Sbjct: 1589 FNIADLKPYLGEEDELPSRTTSVQEGEDDEDINTIATP 1626


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  352 bits (904), Expect = 2e-94
 Identities = 169/271 (62%), Positives = 209/271 (77%), Gaps = 3/271 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHK+DDAT+VADLFF+EIVRLHGVP +IVSDRD KFLS+FW+ LWAKLGTKL
Sbjct: 1217 SKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKL 1276

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++T+LR V++KN+K WEECLP +EFAYNR  HSTT   PF
Sbjct: 1277 LFSTTCHPQTDGQTEVVNRTVSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPF 1336

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            EIVYG            P  ERV+ D K +AE++ +LHE  K  IE+ N +Y    +KG+
Sbjct: 1337 EIVYGLLPRAPIDLLPLPTLERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGK 1396

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            + + FEPGD VW+HLRK+RFP+ R+SKL PR DGPFQV+++IN+NAYKL+LP ++ VS T
Sbjct: 1397 KHVAFEPGDLVWLHLRKDRFPNLRKSKLPPRADGPFQVLQKINDNAYKLELPADFGVSPT 1456

Query: 754  FNITDLSPFDVGDD---SRTNPFEERGNDAE 671
            FNI DL P+   +D   SRT   +E  +D +
Sbjct: 1457 FNIADLKPYLGEEDELESRTTQMQEGEDDED 1487


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  351 bits (900), Expect = 5e-94
 Identities = 167/265 (63%), Positives = 206/265 (77%), Gaps = 3/265 (1%)
 Frame = -3

Query: 1474 SKMAHFIPCHKTDDATNVADLFFKEIVRLHGVPRSIVSDRDVKFLSYFWKVLWAKLGTKL 1295
            SKMAHFIPCHK+DDAT+VADLFF+EIVRLHGVP +IVSDRD KFLS+FW+ LWAKLGTKL
Sbjct: 1321 SKMAHFIPCHKSDDATHVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKL 1380

Query: 1294 LFSTTCHPQTDGQTEVVNRTMTTLLRTVIQKNLKSWEECLPFIEFAYNRVVHSTTNFSPF 1115
            LFSTTCHPQTDGQTEVVNRT++T+LR V++KN+K WEECLP +EFAYNR  HSTT   PF
Sbjct: 1381 LFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPF 1440

Query: 1114 EIVYGFNXXXXXXXXXXPIDERVSLDGKRKAEMVRQLHEKVKIQIEKKNDQYASKANKGR 935
            EIVYG            P  ERV+ D K +AE++ +LHE  K  IE+ N +Y    +KG+
Sbjct: 1441 EIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGK 1500

Query: 934  RRLVFEPGDWVWVHLRKERFPDKRRSKLQPRGDGPFQVIERINENAYKLDLPGEYNVSAT 755
            + + FEPGD VW+HLRK+RFP+ R+SKL PR DGPF+V+++IN+NAYKL+LP ++ VS T
Sbjct: 1501 KHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSPT 1560

Query: 754  FNITDLSPFDVGDD---SRTNPFEE 689
            FNI DL P+   +D   SRT   +E
Sbjct: 1561 FNIADLKPYLGEEDELESRTTQMQE 1585


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