BLASTX nr result

ID: Cocculus23_contig00016206 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00016206
         (373 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002312695.2| hypothetical protein POPTR_0008s19610g [Popu...    58   2e-06
gb|ABK95405.1| unknown [Populus trichocarpa]                           58   2e-06
ref|XP_002315700.2| DNA-binding family protein [Populus trichoca...    57   3e-06

>ref|XP_002312695.2| hypothetical protein POPTR_0008s19610g [Populus trichocarpa]
           gi|550333477|gb|EEE90062.2| hypothetical protein
           POPTR_0008s19610g [Populus trichocarpa]
          Length = 312

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 28/62 (45%), Positives = 42/62 (67%)
 Frame = +3

Query: 123 NSPAYSLALGPSNLDPSNMPAAAVKVFRPIPLLPVPPASRMADLNLNQKSDLEDQPVLSL 302
           ++P   L  G +N++  +      K+ RP+P++P+PP+S+MADLNLNQKS  +  P LSL
Sbjct: 222 DNPLEKLTSGQTNVNKKSS-----KLVRPVPIVPIPPSSKMADLNLNQKSPEDQFPALSL 276

Query: 303 KL 308
           KL
Sbjct: 277 KL 278


>gb|ABK95405.1| unknown [Populus trichocarpa]
          Length = 312

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 28/62 (45%), Positives = 42/62 (67%)
 Frame = +3

Query: 123 NSPAYSLALGPSNLDPSNMPAAAVKVFRPIPLLPVPPASRMADLNLNQKSDLEDQPVLSL 302
           ++P   L  G +N++  +      K+ RP+P++P+PP+S+MADLNLNQKS  +  P LSL
Sbjct: 222 DNPLEKLTSGQTNVNKKSS-----KLVRPVPIVPIPPSSKMADLNLNQKSPEDQFPALSL 276

Query: 303 KL 308
           KL
Sbjct: 277 KL 278


>ref|XP_002315700.2| DNA-binding family protein [Populus trichocarpa]
           gi|550329082|gb|EEF01871.2| DNA-binding family protein
           [Populus trichocarpa]
          Length = 307

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 27/62 (43%), Positives = 41/62 (66%)
 Frame = +3

Query: 123 NSPAYSLALGPSNLDPSNMPAAAVKVFRPIPLLPVPPASRMADLNLNQKSDLEDQPVLSL 302
           ++P   L LG +N+D  +      K+FRP P++P+PP+S++AD+NLNQK   +    LSL
Sbjct: 219 DNPMEKLTLGQTNVDKMSP-----KLFRPTPIIPIPPSSKLADINLNQKGPKDQLTALSL 273

Query: 303 KL 308
           KL
Sbjct: 274 KL 275


Top