BLASTX nr result
ID: Cocculus23_contig00015541
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00015541
(703 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267026.2| PREDICTED: pentatricopeptide repeat-containi... 94 3e-17
emb|CBI35666.3| unnamed protein product [Vitis vinifera] 94 3e-17
ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containi... 93 8e-17
ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containi... 92 1e-16
emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera] 92 2e-16
ref|XP_004310241.1| PREDICTED: pentatricopeptide repeat-containi... 87 4e-15
ref|XP_007157083.1| hypothetical protein PHAVU_002G041500g [Phas... 87 5e-15
ref|XP_007043814.1| Pentatricopeptide repeat (PPR) superfamily p... 87 5e-15
ref|XP_002512657.1| pentatricopeptide repeat-containing protein,... 86 1e-14
gb|EYU28460.1| hypothetical protein MIMGU_mgv1a023962mg [Mimulus... 83 1e-13
ref|XP_002873605.1| pentatricopeptide repeat-containing protein ... 82 2e-13
ref|XP_006399818.1| hypothetical protein EUTSA_v10012768mg [Eutr... 81 4e-13
gb|EPS68237.1| hypothetical protein M569_06531 [Genlisea aurea] 80 9e-13
ref|NP_196831.1| protein required for accD RNA editing 1 [Arabid... 77 7e-12
ref|XP_006290013.1| hypothetical protein CARUB_v10003644mg [Caps... 75 2e-11
ref|XP_006844488.1| hypothetical protein AMTR_s00016p00115350 [A... 67 8e-09
ref|XP_006368854.1| hypothetical protein POPTR_0001s13120g [Popu... 66 1e-08
>ref|XP_002267026.2| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Vitis vinifera]
Length = 835
Score = 94.4 bits (233), Expect = 3e-17
Identities = 54/102 (52%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Frame = +3
Query: 402 MASLPFQPSIH--LESSQSKIPMSSLNFSRIPSQVSLNSRSSLIKTRQNQTGLIENVHLV 575
MA LP P L + SS NF++IPS VSL SS IKT + Q G +EN+HLV
Sbjct: 1 MAGLPLPPPNPPPLSTRNQTSTSSSANFAQIPSWVSLKRSSSTIKTEKIQQGKLENLHLV 60
Query: 576 SLSKQGMLREALEFLKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
SLSKQG L+EA +FLKEMD A VSV SY+ L CGK++S
Sbjct: 61 SLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRS 102
>emb|CBI35666.3| unnamed protein product [Vitis vinifera]
Length = 762
Score = 94.4 bits (233), Expect = 3e-17
Identities = 54/102 (52%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Frame = +3
Query: 402 MASLPFQPSIH--LESSQSKIPMSSLNFSRIPSQVSLNSRSSLIKTRQNQTGLIENVHLV 575
MA LP P L + SS NF++IPS VSL SS IKT + Q G +EN+HLV
Sbjct: 1 MAGLPLPPPNPPPLSTRNQTSTSSSANFAQIPSWVSLKRSSSTIKTEKIQQGKLENLHLV 60
Query: 576 SLSKQGMLREALEFLKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
SLSKQG L+EA +FLKEMD A VSV SY+ L CGK++S
Sbjct: 61 SLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRS 102
>ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Glycine max]
Length = 753
Score = 93.2 bits (230), Expect = 8e-17
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = +3
Query: 474 NFSRIPSQVSLNSRSSLIKTRQNQTGLIENVHLVSLSKQGMLREALEFLKEMDMAGVSVN 653
NF++IPS VSL S S +T QNQ G +EN+HL+SL+KQG LR+ EF++ MD+AG+S+N
Sbjct: 20 NFAQIPSWVSLKSTHSSFRTHQNQQGQVENLHLISLAKQGKLRQVHEFIRNMDIAGISIN 79
Query: 654 TRSYEYLLNTCGKM 695
RSYEYL CG +
Sbjct: 80 PRSYEYLFKMCGTL 93
>ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Glycine max]
Length = 765
Score = 92.4 bits (228), Expect = 1e-16
Identities = 42/74 (56%), Positives = 55/74 (74%)
Frame = +3
Query: 474 NFSRIPSQVSLNSRSSLIKTRQNQTGLIENVHLVSLSKQGMLREALEFLKEMDMAGVSVN 653
NF++IPS VSL S S ++T QNQ G +EN+HL+SL+KQG LRE EF++ MD G+S+N
Sbjct: 32 NFAQIPSWVSLKSSHSSLRTHQNQQGQVENLHLISLAKQGNLREVHEFIRNMDKVGISIN 91
Query: 654 TRSYEYLLNTCGKM 695
RSYEYL CG +
Sbjct: 92 PRSYEYLFKMCGTL 105
>emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
Length = 734
Score = 92.0 bits (227), Expect = 2e-16
Identities = 55/106 (51%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Frame = +3
Query: 402 MASLPFQP------SIHLESSQSKIPMSSLNFSRIPSQVSLNSRSSLIKTRQNQTGLIEN 563
MA LP P S ++S S SS NF++IPS VSL SS I T + Q G +EN
Sbjct: 1 MAGLPLPPPNPPPLSTRXQTSTS----SSANFAQIPSWVSLKRSSSTIXTEKIQQGKLEN 56
Query: 564 VHLVSLSKQGMLREALEFLKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
+HLVSLSKQG L+EA +FLKEMD A VSV SY+ L CGK++S
Sbjct: 57 LHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRS 102
>ref|XP_004310241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 837
Score = 87.4 bits (215), Expect = 4e-15
Identities = 46/79 (58%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = +3
Query: 462 MSSLNFSRIPSQVSLNSRSS-LIKTRQNQTGLIENVHLVSLSKQGMLREALEFLKEMDMA 638
+ S+NFS+IPS VSL S S+ L+ T+ QTG +ENVHLVSLSKQG ++EA EFLK+M+ A
Sbjct: 29 IKSVNFSQIPSWVSLKSTSAPLLSTQHIQTGQVENVHLVSLSKQGKMKEAREFLKQMNEA 88
Query: 639 GVSVNTRSYEYLLNTCGKM 695
GV+V +SY L CG M
Sbjct: 89 GVAVTAQSYRCLFEKCGLM 107
>ref|XP_007157083.1| hypothetical protein PHAVU_002G041500g [Phaseolus vulgaris]
gi|561030498|gb|ESW29077.1| hypothetical protein
PHAVU_002G041500g [Phaseolus vulgaris]
Length = 765
Score = 87.0 bits (214), Expect = 5e-15
Identities = 36/76 (47%), Positives = 58/76 (76%)
Frame = +3
Query: 474 NFSRIPSQVSLNSRSSLIKTRQNQTGLIENVHLVSLSKQGMLREALEFLKEMDMAGVSVN 653
NF++IPS++SL S + ++T N+ G +EN+HL+SL+KQG +RE EF++ MD G+S+N
Sbjct: 32 NFAQIPSRISLKSSHASLRTNPNKQGEVENLHLISLTKQGKVREVHEFIERMDREGISIN 91
Query: 654 TRSYEYLLNTCGKMKS 701
+SYEYL CG++++
Sbjct: 92 LQSYEYLFKMCGRLRA 107
>ref|XP_007043814.1| Pentatricopeptide repeat (PPR) superfamily protein [Theobroma
cacao] gi|508707749|gb|EOX99645.1| Pentatricopeptide
repeat (PPR) superfamily protein [Theobroma cacao]
Length = 762
Score = 87.0 bits (214), Expect = 5e-15
Identities = 47/99 (47%), Positives = 67/99 (67%), Gaps = 1/99 (1%)
Frame = +3
Query: 408 SLPFQPSIHLESSQSKIP-MSSLNFSRIPSQVSLNSRSSLIKTRQNQTGLIENVHLVSLS 584
SLP + +++++ P + +F++ PS VSL S SS +K +Q G +ENVHLVSLS
Sbjct: 5 SLPSSRPSQISATKNETPSIKPASFAQFPSWVSLKSTSSSLKIPLSQQGQVENVHLVSLS 64
Query: 585 KQGMLREALEFLKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
KQ L+EA +FLK+M+ AGV VN SY+ LL TC K++S
Sbjct: 65 KQRKLKEARDFLKQMEEAGVPVNPHSYKSLLETCSKVRS 103
>ref|XP_002512657.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548618|gb|EEF50109.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 837
Score = 85.9 bits (211), Expect = 1e-14
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Frame = +3
Query: 435 LESSQSKIPM-SSLNFSRIPSQVSLNSRSSLIKTRQNQTGLIENVHLVSLSKQGMLREAL 611
L + K+P+ S NF+++PS VSL L + +QN+ G +ENVHLVSLSKQG L+EA
Sbjct: 16 LVKAHDKVPIIKSANFAQLPSWVSLKGTPPLHQAQQNRKGQVENVHLVSLSKQGKLKEAR 75
Query: 612 EFLKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
EFLK+M AG+SV+ SY L CG KS
Sbjct: 76 EFLKQMVDAGISVSPDSYRNLFEICGNSKS 105
>gb|EYU28460.1| hypothetical protein MIMGU_mgv1a023962mg [Mimulus guttatus]
Length = 808
Score = 82.8 bits (203), Expect = 1e-13
Identities = 46/107 (42%), Positives = 68/107 (63%), Gaps = 7/107 (6%)
Frame = +3
Query: 402 MASLPFQPSIHLESSQSKIPMS-------SLNFSRIPSQVSLNSRSSLIKTRQNQTGLIE 560
M S+ SI+L SQ+ +P + + N+++IPS VSL S ++ +K G +E
Sbjct: 43 MKSMATLHSINLICSQASLPQTDKLSISRAANYTQIPSWVSLKSNNAPLKNTHPLHGELE 102
Query: 561 NVHLVSLSKQGMLREALEFLKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
N+HLVSLSKQ L+EA EFL EMD ++V +SY++LL TC K++S
Sbjct: 103 NIHLVSLSKQDKLKEANEFLLEMDRCNIAVAPQSYKHLLETCSKLRS 149
>ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297319442|gb|EFH49864.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 750
Score = 81.6 bits (200), Expect = 2e-13
Identities = 44/87 (50%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +3
Query: 444 SQSKIPM-SSLNFSRIPSQVSLNSRSSLIKTRQNQTGLIENVHLVSLSKQGMLREALEFL 620
S S++P+ + NF++IPS VSL S +S +K Q G +EN+HLVSLSK G L EA EF
Sbjct: 11 SPSRVPVIKTANFNQIPSWVSLKSSTSSVKISHKQ-GQVENLHLVSLSKHGKLNEAFEFF 69
Query: 621 KEMDMAGVSVNTRSYEYLLNTCGKMKS 701
+EMD AGVSV+ SY+ L C +++S
Sbjct: 70 QEMDKAGVSVSLYSYQCLFEACRELRS 96
>ref|XP_006399818.1| hypothetical protein EUTSA_v10012768mg [Eutrema salsugineum]
gi|557100908|gb|ESQ41271.1| hypothetical protein
EUTSA_v10012768mg [Eutrema salsugineum]
Length = 750
Score = 80.9 bits (198), Expect = 4e-13
Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Frame = +3
Query: 435 LESSQSKIPMSSL---NFSRIPSQVSLNSRSSLIKTRQNQTGLIENVHLVSLSKQGMLRE 605
L+SS + P+ L NF RIPS VSL S +S +K Q G +EN+HLVSLSK G L E
Sbjct: 6 LQSSYTPSPIPVLKHANFDRIPSWVSLKSSTSSVKIEHKQ-GQVENLHLVSLSKHGKLNE 64
Query: 606 ALEFLKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
A EF +EMD AGVS++ SY+ L C + +S
Sbjct: 65 AFEFFQEMDKAGVSISPYSYQCLFEACRESRS 96
>gb|EPS68237.1| hypothetical protein M569_06531 [Genlisea aurea]
Length = 1003
Score = 79.7 bits (195), Expect = 9e-13
Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 3/103 (2%)
Frame = +3
Query: 402 MASLPFQPSIHLESSQSKIPMSSL-NFSRIPSQVSLNSRSSLIKT--RQNQTGLIENVHL 572
MASL F SSQ+ +P S+ N++RIPS VSL S + ++T ++ G +ENVHL
Sbjct: 1 MASLQFISF----SSQASLPHSTAANYARIPSWVSLKSSNFSLETPSTRHHQGELENVHL 56
Query: 573 VSLSKQGMLREALEFLKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
VSLSK G L EA EF+ EMD + V V+ +SY++LL C ++KS
Sbjct: 57 VSLSKHGKLEEAHEFVLEMDRSNVPVSPQSYKHLLEACSRLKS 99
>ref|NP_196831.1| protein required for accD RNA editing 1 [Arabidopsis thaliana]
gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g13270, chloroplastic; Flags: Precursor
gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis
thaliana] gi|332004490|gb|AED91873.1| protein required
for accD RNA editing 1 [Arabidopsis thaliana]
Length = 752
Score = 76.6 bits (187), Expect = 7e-12
Identities = 42/88 (47%), Positives = 60/88 (68%), Gaps = 2/88 (2%)
Frame = +3
Query: 444 SQSKIPM-SSLNFSRIPSQVSLNSRSSLIKTR-QNQTGLIENVHLVSLSKQGMLREALEF 617
S S++P+ + NF +IPS VSL S +S + ++ G +EN+HLVSLSK L EA EF
Sbjct: 11 SSSRVPVIKNANFDQIPSWVSLKSSTSSPSVKISHKQGQVENLHLVSLSKHRKLNEAFEF 70
Query: 618 LKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
L+EMD AGVSV++ SY+ L C +++S
Sbjct: 71 LQEMDKAGVSVSSYSYQCLFEACRELRS 98
>ref|XP_006290013.1| hypothetical protein CARUB_v10003644mg [Capsella rubella]
gi|482558719|gb|EOA22911.1| hypothetical protein
CARUB_v10003644mg [Capsella rubella]
Length = 752
Score = 75.1 bits (183), Expect = 2e-11
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Frame = +3
Query: 450 SKIP-MSSLNFSRIPSQVSLNSRSSLIKTR-QNQTGLIENVHLVSLSKQGMLREALEFLK 623
S++P M + NF +IPS VSL S +S + +++ G +EN+HLVSLSK G L EA F +
Sbjct: 13 SRVPAMKNSNFDQIPSWVSLKSSTSSSSLKIEHKQGQVENLHLVSLSKHGKLNEAFAFFQ 72
Query: 624 EMDMAGVSVNTRSYEYLLNTCGKMKS 701
EMD AGVSV+ SY+ L C ++S
Sbjct: 73 EMDKAGVSVSPYSYQCLFEACRNLRS 98
>ref|XP_006844488.1| hypothetical protein AMTR_s00016p00115350 [Amborella trichopoda]
gi|548846959|gb|ERN06163.1| hypothetical protein
AMTR_s00016p00115350 [Amborella trichopoda]
Length = 396
Score = 66.6 bits (161), Expect = 8e-09
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Frame = +3
Query: 417 FQPSIHLESSQSK--IPMSSLNFSRIPSQVSLNSRSSLIKTRQNQTG--LIENVHLVSLS 584
F + LE +Q+K + ++ L+F +PS SLN + + +T +N G +ENVHL+SLS
Sbjct: 10 FPQAKSLEKTQAKKSLTVNPLSFGHLPSWASLNVKQASSQTHKNHGGGGNVENVHLISLS 69
Query: 585 KQGMLREALEFLKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
KQG +EA FL M+ + + V ++Y L CG M S
Sbjct: 70 KQGKFQEAQAFLHSMESSNIPVMPQTYVTLFEACGDMGS 108
>ref|XP_006368854.1| hypothetical protein POPTR_0001s13120g [Populus trichocarpa]
gi|550347141|gb|ERP65423.1| hypothetical protein
POPTR_0001s13120g [Populus trichocarpa]
Length = 655
Score = 66.2 bits (160), Expect = 1e-08
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Frame = +3
Query: 393 CRLMASLPFQPSIHLESSQSKIPMS---SLNFSRIPSQVSLNSRSSLIKTRQNQTGLIEN 563
C ++SL P I + KIP S + NFS+IPS VSL S S ++T+ EN
Sbjct: 6 CFAVSSLNPSPVI---IAHDKIPQSIKAAANFSQIPSWVSLKSTPSSLQTQ-------EN 55
Query: 564 VHLVSLSKQGMLREALEFLKEMDMAGVSVNTRSYEYLLNTCGKMKS 701
++ + ++ L+EA EFLK+M+ AG+SV+ RSY+ L CGK+KS
Sbjct: 56 INKAQIERK--LKEAREFLKQMEDAGISVSPRSYKCLFEACGKIKS 99