BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00014687
         (2376 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   830   0.0  
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   788   0.0  
ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A...   749   0.0  
ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citr...   724   0.0  
ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transc...   721   0.0  
ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transc...   716   0.0  
ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transc...   709   0.0  
ref|XP_007015592.1| BSD domain (BTF2-like transcription factors,...   702   0.0  
ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citr...   701   0.0  
ref|XP_006452719.1| hypothetical protein CICLE_v10007802mg [Citr...   679   0.0  
ref|XP_007015594.1| BSD domain (BTF2-like transcription factors,...   678   0.0  
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g...   667   0.0  
ref|XP_007015595.1| BSD domain (BTF2-like transcription factors,...   662   0.0  
ref|XP_002530618.1| TFIIH basal transcription factor complex sub...   659   0.0  
ref|XP_006452716.1| hypothetical protein CICLE_v10007802mg [Citr...   659   0.0  
ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transc...   659   0.0  
ref|XP_002310512.2| transcription factor-related family protein ...   658   0.0  
dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]    654   0.0  
gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indi...   654   0.0  
dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]    652   0.0  

>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  830 bits (2143), Expect = 0.0
 Identities = 420/609 (68%), Positives = 486/609 (79%)
 Frame = +1

Query: 322  SRQVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEG 501
            S +V+ RARYK TSVKD+GV G++ MTE+KF+F P+DP S+   +V+FR IK HKF+K G
Sbjct: 2    SGEVLKRARYK-TSVKDSGVAGVLKMTEDKFVFMPNDPTSSARFDVEFRFIKGHKFSKGG 60

Query: 502  SHKQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSER 681
            S+K ALLNLTQDS  KG  YIFEF+ + DR+VCR+FVG+ L K      A       SE+
Sbjct: 61   SNKPALLNLTQDSE-KGGGYIFEFENYPDREVCREFVGRALAKFSEASKAG------SEQ 113

Query: 682  SAVPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNK 861
            SAV + DEQLST EME R+KLLRED ELQKLHKQFV+ GVLTEAEFWATRKKLL G+ ++
Sbjct: 114  SAVKLFDEQLSTIEMERRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSR 173

Query: 862  MPKQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSE 1041
              KQRVGFKSAM++D++PL DGRTN+VTFNLTPEII QIF EKPAVHQAFLNFVP KM+E
Sbjct: 174  TSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTE 233

Query: 1042 MDFWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDME 1221
             DFW KYCRAEYLH T+N               VFLKHDDILA EARRK+RRVDPTLDME
Sbjct: 234  KDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDME 293

Query: 1222 ADQGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGDTM 1401
            ADQGDDY+HLPDHGI RDGSKE  + +Y++YRR+L QDLNRHAAVVLEG+ +DV L DT 
Sbjct: 294  ADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTR 353

Query: 1402 TVAEALARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYF 1581
            TVAEALA+SK+ E A+E SD +  +ER ER+SRM EIEDLQAP + P A LCIKDPR+YF
Sbjct: 354  TVAEALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYF 413

Query: 1582 DSQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVL 1761
            DSQQ NALK LGDT+AG+K I CSLST++AYGSLR  IS++K  GL +PIV P++A+KVL
Sbjct: 414  DSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVL 473

Query: 1762 SGLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLY 1941
            +GLTQ++SS K+HLG NPQESVLDRLP  TKEELLHHWTSIQELL+HFWSSYPITTTYLY
Sbjct: 474  NGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLY 533

Query: 1942 NKVSRLKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRSAR 2121
             K SRLKDAM+ IYPKLQ IKESVQSDFRHQVSLLVQPM                KRSAR
Sbjct: 534  TKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRSAR 593

Query: 2122 TGERPNGFV 2148
            +GERPNGFV
Sbjct: 594  SGERPNGFV 602


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  788 bits (2035), Expect = 0.0
 Identities = 407/622 (65%), Positives = 472/622 (75%), Gaps = 43/622 (6%)
 Frame = +1

Query: 322  SRQVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEG 501
            S +V+ RARYK TSVKD+GV G++ MTE+KF+F P+DP S+   +V+FR IK HKF+K G
Sbjct: 2    SGEVLKRARYK-TSVKDSGVAGVLKMTEDKFVFMPNDPTSSARFDVEFRFIKGHKFSKGG 60

Query: 502  SHKQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSER 681
            S+K ALLNLTQDS  KG  YIFEF+ + DR+VCR+FVGK L K      A       SE+
Sbjct: 61   SNKPALLNLTQDSE-KGGGYIFEFENYPDREVCREFVGKALAKFSEASKAG------SEQ 113

Query: 682  SAVPVHDEQLSTTEMELRVKLLRED----------------------------------- 756
            SAV + DEQLST EME R+KLLRED                                   
Sbjct: 114  SAVKLFDEQLSTIEMERRIKLLREDRHSVPEEKFGVLLLKGILPLFGETIIAMKLIDSGI 173

Query: 757  --------IELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMPKQRVGFKSAMLADVR 912
                     ELQKLHKQFV+ GVLTEAEFWATRKKLL G+ ++  KQRVGFKSAM++D++
Sbjct: 174  ASKVKWDCSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLK 233

Query: 913  PLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMDFWTKYCRAEYLHKTK 1092
            PL DGRTN+VTFNLTPEII QIF EKPAVHQAFLNFVP KM+E DFW KYCRAEYLH T+
Sbjct: 234  PLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTR 293

Query: 1093 NXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEADQGDDYIHLPDHGILR 1272
            N               VFLKHDDILA EARRK+RRVDPTLDMEADQGDDY+HLPDHGI R
Sbjct: 294  NTVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFR 353

Query: 1273 DGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGDTMTVAEALARSKQAELASE 1452
            DGSKE  + +Y++YRR+L QDLNRHAAVVLEG+ +DV L DT TVAEALA+SK+ E A+E
Sbjct: 354  DGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANE 413

Query: 1453 ISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFDSQQLNALKALGDTVAG 1632
             SD +  +ER ER+SRM EIEDLQAP + P A LCIKDPR+YFDSQQ NALK LGDT+AG
Sbjct: 414  KSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAG 473

Query: 1633 TKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVLSGLTQHLSSAKYHLGNN 1812
            +K I CSLS+++AYGSLR  IS++K  GL +PIV P++A+KVL+GLTQ++SS K+HLG N
Sbjct: 474  SKQIKCSLSSQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKN 533

Query: 1813 PQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLYNKVSRLKDAMADIYPKL 1992
            PQESVLDRLP  TKEELLHHWTSIQELL+HFWSSYPITTTYLY K SRLKDAM+ IYPKL
Sbjct: 534  PQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKL 593

Query: 1993 QGIKESVQSDFRHQVSLLVQPM 2058
            Q IKESVQSDFRHQVSLLVQPM
Sbjct: 594  QEIKESVQSDFRHQVSLLVQPM 615


>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
            gi|548861733|gb|ERN19104.1| hypothetical protein
            AMTR_s00061p00135540 [Amborella trichopoda]
          Length = 626

 Score =  749 bits (1933), Expect = 0.0
 Identities = 389/598 (65%), Positives = 450/598 (75%)
 Frame = +1

Query: 331  VVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEGSHK 510
            V MRA+YK +  KD GV G++ M ++ F+F P+DP S+V L+V FR IK HKF+KEGS K
Sbjct: 6    VTMRAKYKASGPKDPGVAGVLTMRDDSFIFRPNDPSSSVKLDVSFRCIKGHKFSKEGS-K 64

Query: 511  QALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSERSAV 690
            QALLNLTQD   KG  Y+FEF  F DRDVCRD VG+VLG+LQ +  + ++  +   +   
Sbjct: 65   QALLNLTQD---KGGGYMFEFANFKDRDVCRDLVGRVLGRLQCLPPSDQSAQVVPAQPTT 121

Query: 691  PVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMPK 870
              HD QLS  EME R+ LLRED ELQKLH+Q VIGGVLTE EFWATRK LL    +K  K
Sbjct: 122  Q-HDNQLSMAEMEQRMNLLREDSELQKLHRQLVIGGVLTETEFWATRKNLLDDAAHKASK 180

Query: 871  QRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMDF 1050
            QR GFKSAMLADVRPL DGRTNKVTF+LTPEII QIF EKPAVHQAFL FVP KMSE DF
Sbjct: 181  QRAGFKSAMLADVRPLTDGRTNKVTFSLTPEIIHQIFAEKPAVHQAFLKFVPSKMSERDF 240

Query: 1051 WTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEADQ 1230
            WTKYCRAEYLH+TKN               VFLKHDDILA EARRK+RRVDPT+DM AD 
Sbjct: 241  WTKYCRAEYLHRTKNSVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTVDMAADL 300

Query: 1231 GDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGDTMTVA 1410
            GDDY HLP HGILRDGSKE+ +SE +  +R+LLQDLNRHAAVVLEG+ LDV LGDT TVA
Sbjct: 301  GDDYSHLPGHGILRDGSKESVDSESELPKRTLLQDLNRHAAVVLEGRTLDVELGDTRTVA 360

Query: 1411 EALARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFDSQ 1590
            EALARSKQAE+A+E SDE  NQ+R ER+S+M EIEDLQAP + P APLCIKDPREYFDSQ
Sbjct: 361  EALARSKQAEVATETSDETENQKRLERVSQMTEIEDLQAPRSLPYAPLCIKDPREYFDSQ 420

Query: 1591 QLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVLSGL 1770
            + NA KA GDT +G     C LST+QAY SLR  I ++K  G  +PIV P++A+KVL+ +
Sbjct: 421  RANAFKATGDTGSGVNKDCCHLSTKQAYESLRAQILEVKSVGFKDPIVIPDLALKVLNDV 480

Query: 1771 TQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLYNKV 1950
             Q LSS    LG NPQ +VLD LPHRTKEELL HWTSIQELL+HFWSSYP+TTT+L+ KV
Sbjct: 481  NQQLSSTDPQLGKNPQATVLDMLPHRTKEELLQHWTSIQELLRHFWSSYPLTTTFLHAKV 540

Query: 1951 SRLKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRSART 2124
            +R+KDAMA IY KL  +KESVQS+FRHQVSLLV+PM                KRS +T
Sbjct: 541  NRVKDAMAQIYRKLPEVKESVQSEFRHQVSLLVKPMLQVLDEAFKHYDAEMQKRSTKT 598


>ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555943|gb|ESR65957.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 597

 Score =  724 bits (1868), Expect = 0.0
 Identities = 379/608 (62%), Positives = 459/608 (75%), Gaps = 1/608 (0%)
 Frame = +1

Query: 328  QVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEGSH 507
            QV  RA+YK  SVKD G  G + M ++K +F PD+  S   L V+F+ I+ HK+TKEGS+
Sbjct: 6    QVTKRAKYK-ISVKDPGTTGALRMNDQKLMFMPDNRNSGAKLVVEFKSIQGHKYTKEGSN 64

Query: 508  KQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSERSA 687
            K  L+NL   +N +G SYIFEFD +SD  VCRDFV KVL K +   +AA       E+SA
Sbjct: 65   KPPLINL---ANAQGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAAL------EKSA 115

Query: 688  VPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMP 867
            V + DEQLS  EM+LR+KLL+E+ ELQKLH+QFV G +LTEAEFWA RKKLL  D +K  
Sbjct: 116  VKLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKS 175

Query: 868  KQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMD 1047
            KQRVGFKSAM++D+RP  DGRTNKVTF+LTPEII QIF EKPAVH+AFLNFVP KM+EM+
Sbjct: 176  KQRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEME 235

Query: 1048 FWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEAD 1227
            FWTKYCRAEYL +TKN               VFLK DDILA E R+K+RRVDPTLDMEAD
Sbjct: 236  FWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEAD 295

Query: 1228 QGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGD-TMT 1404
            +GDDY HLPDHGI RDG+KE+ E + + YRR+LLQDLNRHAAVVLEG+ +DV   D T  
Sbjct: 296  EGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRA 355

Query: 1405 VAEALARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFD 1584
            +AEALARSK+    +E +D NAN+ER +R  R+AEIEDLQAPH  PLAPL IKD REYFD
Sbjct: 356  LAEALARSKR---GNEGADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFD 412

Query: 1585 SQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVLS 1764
            SQQ N LKA  D+ A  K   CSLS ++AYGS+R  IS++K  GL +PIVNPEVA+KV S
Sbjct: 413  SQQANTLKASRDSQASMK---CSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYS 469

Query: 1765 GLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLYN 1944
            GLT ++SS KYHLG NP+E+VLDRLP  TKE+LL+HW SIQELLKHFWSSYPITT YLY+
Sbjct: 470  GLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYS 529

Query: 1945 KVSRLKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRSART 2124
            KV+RLKDA+++IYP+L+ +KES+ +D RHQVSLLV+PM                KRSA++
Sbjct: 530  KVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQQALDAAIQHYDADLQKRSAKS 589

Query: 2125 GERPNGFV 2148
            GE+PNG+V
Sbjct: 590  GEKPNGYV 597


>ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Citrus sinensis]
          Length = 597

 Score =  721 bits (1860), Expect = 0.0
 Identities = 376/608 (61%), Positives = 458/608 (75%), Gaps = 1/608 (0%)
 Frame = +1

Query: 328  QVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEGSH 507
            QV  RA+YK  SVKD G PG + M ++K +F PD+  S   L V+F+ I+ HK+TKEGS+
Sbjct: 6    QVTKRAKYK-ISVKDPGTPGALRMNDQKLMFMPDNRNSGAKLVVEFKSIQGHKYTKEGSN 64

Query: 508  KQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSERSA 687
            K  L+NL   +N +G SYIFEFD ++D  VCRDFV KVL K +   +AA       E+SA
Sbjct: 65   KPPLINL---ANAQGGSYIFEFDSYADLHVCRDFVSKVLEKSKETPNAAL------EKSA 115

Query: 688  VPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMP 867
            + + DEQLS  EM+LR+KLL+E+ ELQKLH+QFV G +LTEAEFWA RKKLL  D +K  
Sbjct: 116  IKLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDIDPSKKS 175

Query: 868  KQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMD 1047
            KQRVGFKSAM++D+RP  DGRTNKVTF+LTPEII QIF EKPAVH+AFLNFVP KM+EM+
Sbjct: 176  KQRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEME 235

Query: 1048 FWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEAD 1227
            FWTKYCRAEYL +TKN               VFLK DDILA E R+K+RRVDPTLDMEAD
Sbjct: 236  FWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEAD 295

Query: 1228 QGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGD-TMT 1404
            +GDDY HLPDHGI RDG+KE+ E + + YRR+LLQDLNRHAAVVLEG+ +DV   D T  
Sbjct: 296  EGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRA 355

Query: 1405 VAEALARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFD 1584
            +AEALARSK+    +E +D NAN+ER +R  R+AEIEDLQAPH  PLAPL IKD REYFD
Sbjct: 356  LAEALARSKR---GNEGADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFD 412

Query: 1585 SQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVLS 1764
            SQQ N LKA  D  A  K   CSLS ++AY S+R  IS++K  GL +PIVNPEVA+KV S
Sbjct: 413  SQQANTLKASRDAQASMK---CSLSKQEAYRSVRDAISEIKDMGLSDPIVNPEVALKVYS 469

Query: 1765 GLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLYN 1944
            GLT ++SS KYHLG NP+E+VLDRLP  TKE+LL+HW SIQELLKHFWSSYPITT YLY+
Sbjct: 470  GLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYS 529

Query: 1945 KVSRLKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRSART 2124
            KV+RLKDA+++IYP+L+ +KES+ +D RHQVSLLV+PM                KRSA++
Sbjct: 530  KVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQQALDAAIQHYDADLQKRSAKS 589

Query: 2125 GERPNGFV 2148
            GE+PNG++
Sbjct: 590  GEKPNGYI 597


>ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum tuberosum]
          Length = 599

 Score =  716 bits (1848), Expect = 0.0
 Identities = 372/611 (60%), Positives = 454/611 (74%)
 Frame = +1

Query: 316  MSSRQVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTK 495
            M+  ++V RA+YK TSVK  GVPG++ +T+E+F F P+DP  T  LNV+F+LIK HK +K
Sbjct: 1    MADGKLVKRAKYK-TSVKVPGVPGVLKLTKERFYFMPNDPTLTTKLNVEFKLIKGHKSSK 59

Query: 496  EGSHKQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINS 675
            E S KQALLNLTQ    +G +Y+FEFD F DRD CRDFV   +     +  A       S
Sbjct: 60   ECSSKQALLNLTQ---AQGGNYLFEFDSFPDRDQCRDFVASAIAACGEIGKAT------S 110

Query: 676  ERSAVPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDV 855
            E+ AVP HDEQLS TEM  R+KLL+E+ ELQKLH+Q VIGG+L+EAEFWA RKKLL    
Sbjct: 111  EKPAVP-HDEQLSATEMGRRIKLLQENSELQKLHRQLVIGGILSEAEFWAARKKLLEQSE 169

Query: 856  NKMPKQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKM 1035
            NK PKQRV  K+ M + V+PL DG+TN+VTFNLTPE+I QIF EKPAV QA+L FVP KM
Sbjct: 170  NKKPKQRVALKNDMWS-VKPLSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKM 228

Query: 1036 SEMDFWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLD 1215
            SE +FWTKY RAEYLH TKN               VFLK DD+L  EARRK+RRVDPTLD
Sbjct: 229  SEKEFWTKYSRAEYLHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLD 288

Query: 1216 MEADQGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGD 1395
            MEAD+GDDY+HLPDHG+ +  +KE  E +Y+ ++RS  Q LN+HAAVVL G+ +DV LGD
Sbjct: 289  MEADEGDDYMHLPDHGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLRGRVIDVELGD 348

Query: 1396 TMTVAEALARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPRE 1575
            T +VAEA  R+ QAE A+E+SDENA +ER +++SR+AEIEDLQ P + P+A L IKDPR+
Sbjct: 349  TRSVAEAFTRTYQAEQATEVSDENAYRERVKKVSRVAEIEDLQGPQDPPVALLSIKDPRD 408

Query: 1576 YFDSQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVK 1755
            YFDSQQ NA+KALGD   G + +  S+S E+A+ SL+  IS++  +GLI PI++PEVA+K
Sbjct: 409  YFDSQQANAIKALGDAETGIRQLKFSVSKEEAFCSLKDSISEINSQGLIEPIISPEVALK 468

Query: 1756 VLSGLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTY 1935
            V +GL+Q++SS KY+LG NP ESVLD+LP  TK ELL HWTSIQELLKHFWSSYPITT Y
Sbjct: 469  VFNGLSQNISSTKYYLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKY 528

Query: 1936 LYNKVSRLKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRS 2115
             Y KV+RLKDAM+ IYPKLQ IKESVQSD RHQVSLLVQPM                KRS
Sbjct: 529  FYAKVTRLKDAMSQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADIQKRS 588

Query: 2116 ARTGERPNGFV 2148
            A++GERPNGFV
Sbjct: 589  AKSGERPNGFV 599


>ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum lycopersicum]
          Length = 599

 Score =  709 bits (1831), Expect = 0.0
 Identities = 369/611 (60%), Positives = 450/611 (73%)
 Frame = +1

Query: 316  MSSRQVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTK 495
            M+  +VV RA+YK TSVK  GVPG++ +T+E+F F P+DP  T  LNV+F+LIK HK +K
Sbjct: 1    MADGKVVKRAKYK-TSVKVPGVPGVLKLTKERFYFMPNDPTLTTKLNVEFKLIKGHKSSK 59

Query: 496  EGSHKQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINS 675
            E S KQALLNLTQ    +G +Y+FEFD F DRD CRDFV   +     +  A       S
Sbjct: 60   ECSSKQALLNLTQ---AQGGNYLFEFDSFPDRDQCRDFVASAIAACGEIGKAT------S 110

Query: 676  ERSAVPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDV 855
            E+ AVP HDEQLS TEM  R+KLL+E+ ELQ LH++ VI G+L+E EFWA RKKLL    
Sbjct: 111  EKPAVP-HDEQLSATEMGRRIKLLQENSELQNLHRELVIAGILSETEFWAARKKLLEQSE 169

Query: 856  NKMPKQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKM 1035
            NK PKQRV  K+ M + V+PL DG+TN+VTFNLTPE+I QIF EKPAV QA+L FVP KM
Sbjct: 170  NKKPKQRVALKNDMWS-VKPLSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKM 228

Query: 1036 SEMDFWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLD 1215
            SE +FWTKY RAEYLH TKN               VFLK DD+L  EARRK+RRVDPTLD
Sbjct: 229  SEKEFWTKYSRAEYLHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRRVDPTLD 288

Query: 1216 MEADQGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGD 1395
            MEAD+GDDY+HLPDHG+ +  +KE  E +Y+ ++RS  Q LN+HAAVVL+G+ +DV LGD
Sbjct: 289  MEADEGDDYMHLPDHGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLQGRVIDVELGD 348

Query: 1396 TMTVAEALARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPRE 1575
            T +VAEA  R+ QAE A+E+SDENA +ER +++SR+AEIEDLQ P + P+A L IKDPR+
Sbjct: 349  TRSVAEAFTRTNQAEQATEVSDENAYRERVKKVSRVAEIEDLQGPRDPPVALLSIKDPRD 408

Query: 1576 YFDSQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVK 1755
            YFDSQQ NA+KALGD   G + +   +S E+A+ SL+  IS++  +GLI PI++PEVA+K
Sbjct: 409  YFDSQQANAIKALGDAETGIRQLKFRVSKEEAFCSLKDSISEINSQGLIEPIISPEVALK 468

Query: 1756 VLSGLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTY 1935
            V + L+Q++SS KYHLG NP ESVLD+LP  TK ELL HWTSIQELLKHFWSSYPITT Y
Sbjct: 469  VFNLLSQNISSTKYHLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSYPITTKY 528

Query: 1936 LYNKVSRLKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRS 2115
             Y KV+RLKDAM+ IYPKLQ IKESVQSD RHQVSLLVQPM                KRS
Sbjct: 529  FYAKVTRLKDAMSQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDADLQKRS 588

Query: 2116 ARTGERPNGFV 2148
            AR+GERPNGFV
Sbjct: 589  ARSGERPNGFV 599


>ref|XP_007015592.1| BSD domain (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins), putative isoform 1
            [Theobroma cacao] gi|508785955|gb|EOY33211.1| BSD domain
            (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins), putative isoform 1
            [Theobroma cacao]
          Length = 646

 Score =  702 bits (1812), Expect = 0.0
 Identities = 379/659 (57%), Positives = 445/659 (67%), Gaps = 49/659 (7%)
 Frame = +1

Query: 316  MSSRQVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTK 495
            M+S  V  RA+YK T++KD G PG + MT EK LF P +P S   L+V+FR IK  K TK
Sbjct: 1    MASGHVTKRAKYK-TTIKDPGTPGTLRMTLEKILFVPHNPKSAGKLDVEFRFIKGQKHTK 59

Query: 496  EGSHKQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINS 675
            EGS K   LNLT + N    S+IFEF+ +SD   CRDFVGKVL K   +          S
Sbjct: 60   EGSSKPPWLNLTNNQN---GSFIFEFENYSDLQDCRDFVGKVLAKSGEV----------S 106

Query: 676  ERSAVPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDV 855
            E+  V   DEQLS  EMELR+KLLRED ELQKLHKQFV+ GVLTEAEFWATRKKLL  + 
Sbjct: 107  EKPTVTYPDEQLSAAEMELRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREA 166

Query: 856  NKMPKQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKM 1035
            NK  KQR+GFKSAM++D++P  DGRTNKVTFNLTPEII QIF EKPAVH+AFL +VP KM
Sbjct: 167  NKKTKQRLGFKSAMISDIKPSTDGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKM 226

Query: 1036 SEMDFWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLD 1215
            SE DFWTKY RAEYLH TKN               VFLK DDILA E+R K+RRVDPTLD
Sbjct: 227  SERDFWTKYFRAEYLHSTKNSVAAAAEAAEDEELAVFLKQDDILASESRSKIRRVDPTLD 286

Query: 1216 MEADQGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGD 1395
            M+AD+GDDY HLPDHGI RDGSKE TESE + YRR+L QD+NRHAAVVLEG+A+DV L D
Sbjct: 287  MDADEGDDYTHLPDHGIFRDGSKEVTESENELYRRTLSQDINRHAAVVLEGRAVDVELED 346

Query: 1396 TMTVAEALARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPRE 1575
            T +VAEALARSKQ       S  + ++ER +R+SRM EIEDLQAP+N PLAPLCIKDPR+
Sbjct: 347  TRSVAEALARSKQESSTKGESYGDTSRERLDRVSRMTEIEDLQAPNNLPLAPLCIKDPRD 406

Query: 1576 YFDSQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVK 1755
            YFDSQQ+NAL+  GD +AGT+ I CSLS+++ YGSLR+ IS +K  GL +PIV PEVA +
Sbjct: 407  YFDSQQVNALRTSGDELAGTEQIKCSLSSQEVYGSLRESISVIKAMGLKDPIVKPEVAHQ 466

Query: 1756 VLSGLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTY 1935
            V   LTQ +S+ KY++G NPQESVLDRLP + KEELLHHWTSI ELL+HFW+SYPITT+Y
Sbjct: 467  VFDALTQSISTTKYNIGKNPQESVLDRLPKKIKEELLHHWTSILELLRHFWASYPITTSY 526

Query: 1936 LYNKVSRLKDAMADIYPKLQG--------------------------------------- 1998
            LY KV+         Y KL+                                        
Sbjct: 527  LYTKVNAALVLTLLSYQKLEAGKQTEGCHVTYLSTARVVLSNYPQVPFISSLLFYLLGSS 586

Query: 1999 ----------IKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRSARTGERPNGF 2145
                      IK SV SD RHQVSLL++PM                KRSAR+GERPNG+
Sbjct: 587  DAKASYVWMEIKGSVPSDLRHQVSLLIRPMHQALDAAIQHYEADMQKRSARSGERPNGY 645


>ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555944|gb|ESR65958.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 564

 Score =  701 bits (1810), Expect = 0.0
 Identities = 365/579 (63%), Positives = 441/579 (76%), Gaps = 1/579 (0%)
 Frame = +1

Query: 415  LFTPDDPMSTVNLNVQFRLIKSHKFTKEGSHKQALLNLTQDSNVKGASYIFEFDKFSDRD 594
            +F PD+  S   L V+F+ I+ HK+TKEGS+K  L+NL   +N +G SYIFEFD +SD  
Sbjct: 1    MFMPDNRNSGAKLVVEFKSIQGHKYTKEGSNKPPLINL---ANAQGGSYIFEFDSYSDLH 57

Query: 595  VCRDFVGKVLGKLQAMQSAAKNPTINSERSAVPVHDEQLSTTEMELRVKLLREDIELQKL 774
            VCRDFV KVL K +   +AA       E+SAV + DEQLS  EM+LR+KLL+E+ ELQKL
Sbjct: 58   VCRDFVSKVLEKSKETPNAAL------EKSAVKLPDEQLSEEEMQLRIKLLQENSELQKL 111

Query: 775  HKQFVIGGVLTEAEFWATRKKLLAGDVNKMPKQRVGFKSAMLADVRPLPDGRTNKVTFNL 954
            H+QFV G +LTEAEFWA RKKLL  D +K  KQRVGFKSAM++D+RP  DGRTNKVTF+L
Sbjct: 112  HRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQRVGFKSAMISDIRPATDGRTNKVTFSL 171

Query: 955  TPEIIQQIFTEKPAVHQAFLNFVPKKMSEMDFWTKYCRAEYLHKTKNXXXXXXXXXXXXX 1134
            TPEII QIF EKPAVH+AFLNFVP KM+EM+FWTKYCRAEYL +TKN             
Sbjct: 172  TPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEE 231

Query: 1135 XXVFLKHDDILAKEARRKVRRVDPTLDMEADQGDDYIHLPDHGILRDGSKETTESEYDEY 1314
              VFLK DDILA E R+K+RRVDPTLDMEAD+GDDY HLPDHGI RDG+KE+ E + + Y
Sbjct: 232  LAVFLKEDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHY 291

Query: 1315 RRSLLQDLNRHAAVVLEGKALDVALGD-TMTVAEALARSKQAELASEISDENANQERSER 1491
            RR+LLQDLNRHAAVVLEG+ +DV   D T  +AEALARSK+    +E +D NAN+ER +R
Sbjct: 292  RRTLLQDLNRHAAVVLEGRTIDVEREDSTRALAEALARSKR---GNEGADNNANEERLDR 348

Query: 1492 LSRMAEIEDLQAPHNYPLAPLCIKDPREYFDSQQLNALKALGDTVAGTKPINCSLSTEQA 1671
              R+AEIEDLQAPH  PLAPL IKD REYFDSQQ N LKA  D+ A  K   CSLS ++A
Sbjct: 349  TPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDSQASMK---CSLSRQEA 405

Query: 1672 YGSLRKLISDMKVKGLINPIVNPEVAVKVLSGLTQHLSSAKYHLGNNPQESVLDRLPHRT 1851
            YGS+R  IS++K  GL +PIVNPEVA+KV SGLT ++SS KYHLG NP+E+VLDRLP  T
Sbjct: 406  YGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSAT 465

Query: 1852 KEELLHHWTSIQELLKHFWSSYPITTTYLYNKVSRLKDAMADIYPKLQGIKESVQSDFRH 2031
            KE+LL+HW SIQELLKHFWSSYPITT YLY+KV+RLKDA+++IYP+L+ +KES+ +D RH
Sbjct: 466  KEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRH 525

Query: 2032 QVSLLVQPMXXXXXXXXXXXXXXXXKRSARTGERPNGFV 2148
            QVSLLV+PM                KRSA++GE+PNG+V
Sbjct: 526  QVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNGYV 564


>ref|XP_006452719.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555945|gb|ESR65959.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 557

 Score =  679 bits (1753), Expect = 0.0
 Identities = 355/557 (63%), Positives = 427/557 (76%), Gaps = 1/557 (0%)
 Frame = +1

Query: 328  QVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEGSH 507
            QV  RA+YK  SVKD G  G + M ++K +F PD+  S   L V+F+ I+ HK+TKEGS+
Sbjct: 6    QVTKRAKYK-ISVKDPGTTGALRMNDQKLMFMPDNRNSGAKLVVEFKSIQGHKYTKEGSN 64

Query: 508  KQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSERSA 687
            K  L+NL   +N +G SYIFEFD +SD  VCRDFV KVL K +   +AA       E+SA
Sbjct: 65   KPPLINL---ANAQGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAAL------EKSA 115

Query: 688  VPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMP 867
            V + DEQLS  EM+LR+KLL+E+ ELQKLH+QFV G +LTEAEFWA RKKLL  D +K  
Sbjct: 116  VKLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKS 175

Query: 868  KQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMD 1047
            KQRVGFKSAM++D+RP  DGRTNKVTF+LTPEII QIF EKPAVH+AFLNFVP KM+EM+
Sbjct: 176  KQRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEME 235

Query: 1048 FWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEAD 1227
            FWTKYCRAEYL +TKN               VFLK DDILA E R+K+RRVDPTLDMEAD
Sbjct: 236  FWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEAD 295

Query: 1228 QGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGD-TMT 1404
            +GDDY HLPDHGI RDG+KE+ E + + YRR+LLQDLNRHAAVVLEG+ +DV   D T  
Sbjct: 296  EGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRA 355

Query: 1405 VAEALARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFD 1584
            +AEALARSK+    +E +D NAN+ER +R  R+AEIEDLQAPH  PLAPL IKD REYFD
Sbjct: 356  LAEALARSKR---GNEGADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFD 412

Query: 1585 SQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVLS 1764
            SQQ N LKA  D+ A  K   CSLS ++AYGS+R  IS++K  GL +PIVNPEVA+KV S
Sbjct: 413  SQQANTLKASRDSQASMK---CSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYS 469

Query: 1765 GLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLYN 1944
            GLT ++SS KYHLG NP+E+VLDRLP  TKE+LL+HW SIQELLKHFWSSYPITT YLY+
Sbjct: 470  GLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYS 529

Query: 1945 KVSRLKDAMADIYPKLQ 1995
            KV+RLKDA+++IYP+L+
Sbjct: 530  KVNRLKDALSNIYPQLE 546


>ref|XP_007015594.1| BSD domain (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins) isoform 3 [Theobroma
            cacao] gi|508785957|gb|EOY33213.1| BSD domain (BTF2-like
            transcription factors, Synapse-associated proteins and
            DOS2-like proteins) isoform 3 [Theobroma cacao]
          Length = 549

 Score =  678 bits (1750), Expect = 0.0
 Identities = 350/546 (64%), Positives = 410/546 (75%)
 Frame = +1

Query: 316  MSSRQVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTK 495
            M+S  V  RA+YK T++KD G PG + MT EK LF P +P S   L+V+FR IK  K TK
Sbjct: 1    MASGHVTKRAKYK-TTIKDPGTPGTLRMTLEKILFVPHNPKSAGKLDVEFRFIKGQKHTK 59

Query: 496  EGSHKQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINS 675
            EGS K   LNLT + N    S+IFEF+ +SD   CRDFVGKVL K   +          S
Sbjct: 60   EGSSKPPWLNLTNNQN---GSFIFEFENYSDLQDCRDFVGKVLAKSGEV----------S 106

Query: 676  ERSAVPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDV 855
            E+  V   DEQLS  EMELR+KLLRED ELQKLHKQFV+ GVLTEAEFWATRKKLL  + 
Sbjct: 107  EKPTVTYPDEQLSAAEMELRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREA 166

Query: 856  NKMPKQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKM 1035
            NK  KQR+GFKSAM++D++P  DGRTNKVTFNLTPEII QIF EKPAVH+AFL +VP KM
Sbjct: 167  NKKTKQRLGFKSAMISDIKPSTDGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKM 226

Query: 1036 SEMDFWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLD 1215
            SE DFWTKY RAEYLH TKN               VFLK DDILA E+R K+RRVDPTLD
Sbjct: 227  SERDFWTKYFRAEYLHSTKNSVAAAAEAAEDEELAVFLKQDDILASESRSKIRRVDPTLD 286

Query: 1216 MEADQGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGD 1395
            M+AD+GDDY HLPDHGI RDGSKE TESE + YRR+L QD+NRHAAVVLEG+A+DV L D
Sbjct: 287  MDADEGDDYTHLPDHGIFRDGSKEVTESENELYRRTLSQDINRHAAVVLEGRAVDVELED 346

Query: 1396 TMTVAEALARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPRE 1575
            T +VAEALARSKQ       S  + ++ER +R+SRM EIEDLQAP+N PLAPLCIKDPR+
Sbjct: 347  TRSVAEALARSKQESSTKGESYGDTSRERLDRVSRMTEIEDLQAPNNLPLAPLCIKDPRD 406

Query: 1576 YFDSQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVK 1755
            YFDSQQ+NAL+  GD +AGT+ I CSLS+++ YGSLR+ IS +K  GL +PIV PEVA +
Sbjct: 407  YFDSQQVNALRTSGDELAGTEQIKCSLSSQEVYGSLRESISVIKAMGLKDPIVKPEVAHQ 466

Query: 1756 VLSGLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTY 1935
            V   LTQ +S+ KY++G NPQESVLDRLP + KEELLHHWTSI ELL+HFW+SYPITT+Y
Sbjct: 467  VFDALTQSISTTKYNIGKNPQESVLDRLPKKIKEELLHHWTSILELLRHFWASYPITTSY 526

Query: 1936 LYNKVS 1953
            LY K S
Sbjct: 527  LYTKAS 532


>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
            gi|38636938|dbj|BAD03200.1| unknown protein [Oryza sativa
            Japonica Group] gi|113623552|dbj|BAF23497.1| Os08g0338200
            [Oryza sativa Japonica Group]
            gi|215686948|dbj|BAG90767.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 604

 Score =  667 bits (1720), Expect = 0.0
 Identities = 352/603 (58%), Positives = 433/603 (71%), Gaps = 2/603 (0%)
 Frame = +1

Query: 343  ARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEGSHKQA-- 516
            A+YK T++KD G  G++ M E+KF FTP DP S + LNV FR IK HKF K    K A  
Sbjct: 8    AKYK-TTLKDPGTTGVLRMNEDKFTFTPHDPRSAMKLNVDFRSIKGHKFNKVDGSKPAPP 66

Query: 517  LLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSERSAVPV 696
            LLNL++DS+ KG  Y+FEFD  ++RD+ RDFV KVLGK Q   +    P +  E S    
Sbjct: 67   LLNLSKDSD-KGGGYMFEFDNVTNRDLSRDFVAKVLGKQQG--TIPPKPNVPPENSVTST 123

Query: 697  HDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMPKQR 876
             +EQLS  EM+ R+KLL+ED ELQKLH +FV+G +L E+EFWATRK LL  + NK  KQR
Sbjct: 124  GEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDEANKGSKQR 183

Query: 877  VGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMDFWT 1056
             GFKSAMLADVRP  DGRTNKVTF+LT EII QIF EKPAVH+AFL+FVPKKMSE DFWT
Sbjct: 184  PGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKKMSEKDFWT 243

Query: 1057 KYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEADQGD 1236
            KY RAEYL +TKN               +FLK+DDILAKEAR K++RVDPTLDMEAD GD
Sbjct: 244  KYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTLDMEADAGD 303

Query: 1237 DYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGDTMTVAEA 1416
            DYIHLPDHGI+RDGSKET +++ +  RR+L QDLNRHAAVVLEG++ DV L DT TVAEA
Sbjct: 304  DYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTVAEA 363

Query: 1417 LARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFDSQQL 1596
            +ARSK+   +S ISD+  N ER  +++RM EIEDLQAP + P APLCIKDPREYFDSQQ 
Sbjct: 364  IARSKKEPPSSSISDD-TNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQQA 422

Query: 1597 NALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVLSGLTQ 1776
            NAL++LG    G    NC LST+ A+  L   IS +KV GL  P++  +VA+KVL+ L +
Sbjct: 423  NALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVALKVLNELNE 482

Query: 1777 HLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLYNKVSR 1956
             +S ++     NPQ+S+L ++P RT++EL+ HW +IQELL+HFWSSYPITT+ LYNKV R
Sbjct: 483  GISRSRRLNLKNPQDSLLGQIPRRTRDELMDHWAAIQELLQHFWSSYPITTSVLYNKVQR 542

Query: 1957 LKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRSARTGERP 2136
            +KDAM  IY KLQ IKES Q D RH++S LV+PM                K S+++G +P
Sbjct: 543  IKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQK-SSKSGNKP 601

Query: 2137 NGF 2145
            NGF
Sbjct: 602  NGF 604


>ref|XP_007015595.1| BSD domain (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins) isoform 4, partial
            [Theobroma cacao] gi|508785958|gb|EOY33214.1| BSD domain
            (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins) isoform 4, partial
            [Theobroma cacao]
          Length = 516

 Score =  662 bits (1707), Expect = 0.0
 Identities = 338/515 (65%), Positives = 396/515 (76%)
 Frame = +1

Query: 451  LNVQFRLIKSHKFTKEGSHKQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGK 630
            L+V+FR IK  K TKEGS K   LNLT + N    S+IFEF+ +SD   CRDFVGKVL K
Sbjct: 1    LDVEFRFIKGQKHTKEGSSKPPWLNLTNNQN---GSFIFEFENYSDLQDCRDFVGKVLAK 57

Query: 631  LQAMQSAAKNPTINSERSAVPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTE 810
               +          SE+  V   DEQLS  EMELR+KLLRED ELQKLHKQFV+ GVLTE
Sbjct: 58   SGEV----------SEKPTVTYPDEQLSAAEMELRIKLLREDSELQKLHKQFVLSGVLTE 107

Query: 811  AEFWATRKKLLAGDVNKMPKQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEK 990
            AEFWATRKKLL  + NK  KQR+GFKSAM++D++P  DGRTNKVTFNLTPEII QIF EK
Sbjct: 108  AEFWATRKKLLDREANKKTKQRLGFKSAMISDIKPSTDGRTNKVTFNLTPEIILQIFAEK 167

Query: 991  PAVHQAFLNFVPKKMSEMDFWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILA 1170
            PAVH+AFL +VP KMSE DFWTKY RAEYLH TKN               VFLK DDILA
Sbjct: 168  PAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTKNSVAAAAEAAEDEELAVFLKQDDILA 227

Query: 1171 KEARRKVRRVDPTLDMEADQGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHA 1350
             E+R K+RRVDPTLDM+AD+GDDY HLPDHGI RDGSKE TESE + YRR+L QD+NRHA
Sbjct: 228  SESRSKIRRVDPTLDMDADEGDDYTHLPDHGIFRDGSKEVTESENELYRRTLSQDINRHA 287

Query: 1351 AVVLEGKALDVALGDTMTVAEALARSKQAELASEISDENANQERSERLSRMAEIEDLQAP 1530
            AVVLEG+A+DV L DT +VAEALARSKQ       S  + ++ER +R+SRM EIEDLQAP
Sbjct: 288  AVVLEGRAVDVELEDTRSVAEALARSKQESSTKGESYGDTSRERLDRVSRMTEIEDLQAP 347

Query: 1531 HNYPLAPLCIKDPREYFDSQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKV 1710
            +N PLAPLCIKDPR+YFDSQQ+NAL+  GD +AGT+ I CSLS+++ YGSLR+ IS +K 
Sbjct: 348  NNLPLAPLCIKDPRDYFDSQQVNALRTSGDELAGTEQIKCSLSSQEVYGSLRESISVIKA 407

Query: 1711 KGLINPIVNPEVAVKVLSGLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQE 1890
             GL +PIV PEVA +V   LTQ +S+ KY++G NPQESVLDRLP + KEELLHHWTSI E
Sbjct: 408  MGLKDPIVKPEVAHQVFDALTQSISTTKYNIGKNPQESVLDRLPKKIKEELLHHWTSILE 467

Query: 1891 LLKHFWSSYPITTTYLYNKVSRLKDAMADIYPKLQ 1995
            LL+HFW+SYPITT+YLY KV+RLKDAM+ IYP+L+
Sbjct: 468  LLRHFWASYPITTSYLYTKVNRLKDAMSHIYPQLE 502


>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
            communis] gi|223529828|gb|EEF31761.1| TFIIH basal
            transcription factor complex subunit, putative [Ricinus
            communis]
          Length = 597

 Score =  659 bits (1701), Expect = 0.0
 Identities = 353/613 (57%), Positives = 439/613 (71%), Gaps = 3/613 (0%)
 Frame = +1

Query: 316  MSSRQVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTK 495
            M+S+QV  R +YK TS+KD G PG +++T EK  F P++P S   L++ F+ + +HK TK
Sbjct: 1    MASKQVTKRVKYK-TSLKDPGTPGRLLLTMEKLAFRPNNPNSASKLDMDFKYVTNHKNTK 59

Query: 496  EGSHKQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINS 675
            EGS K A+LNLT +   +G SYIFEF+   D  +C++ VGK L KL         P + S
Sbjct: 60   EGSAK-AMLNLTSN---QGVSYIFEFENHDDLRICKEIVGKALSKLGDTPKPPDAPEVPS 115

Query: 676  ERSAVPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDV 855
            +         Q ST E+ LR+ LLRE++ELQKLHKQFV   VLT++EFWATRKKLL G+ 
Sbjct: 116  D---------QPSTEELLLRMNLLRENLELQKLHKQFVSDRVLTDSEFWATRKKLLNGEF 166

Query: 856  NKMPKQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKM 1035
            ++  KQRVG KS MLAD +PL DG+TNKVTFNLTPEI+++IF EKPAVHQA+L+ VP KM
Sbjct: 167  SRKSKQRVGLKSVMLADSKPLIDGQTNKVTFNLTPEIVREIFAEKPAVHQAYLSLVPNKM 226

Query: 1036 SEMDFWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLD 1215
            SE DFWTKYCRAEYL +++N               +FLK DDILA E R+K+R VDPTLD
Sbjct: 227  SERDFWTKYCRAEYLQRSRNIHAAAAEAAEDEELALFLKPDDILASETRQKIRCVDPTLD 286

Query: 1216 MEADQGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKAL-DVALG 1392
            MEADQGDDY HLPDHGI+RDGSK+  ES+++ YRR+LLQDLNRHAAVVLEG A+ D  L 
Sbjct: 287  MEADQGDDYTHLPDHGIVRDGSKDVIESQHEPYRRTLLQDLNRHAAVVLEGTAIDDEQLQ 346

Query: 1393 DTMTVAEALARSKQA-ELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDP 1569
            DT  VA+ALARSK+  +  +  +D NANQERS R+S+M EIEDLQ  +++ LAPLCIKDP
Sbjct: 347  DTKAVADALARSKRGIKTINREADGNANQERSNRISQMMEIEDLQGSNDHHLAPLCIKDP 406

Query: 1570 REYFDSQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVA 1749
            R+YFDSQQ +ALK   D  +GT+   CSLS+++AY SLR  I+  K  GL +PIV PE+A
Sbjct: 407  RDYFDSQQASALKNSRDIPSGTEAARCSLSSQEAYASLRDSITQTKAMGLNDPIVKPEIA 466

Query: 1750 VKVLSGLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITT 1929
             KVLS LT ++SS KYHLG N +ESVLDRLP+  KEELLHHW SI+ELL+H+WSSYPITT
Sbjct: 467  TKVLSILTHNISSTKYHLGKNSRESVLDRLPNTIKEELLHHWMSIEELLRHYWSSYPITT 526

Query: 1930 TYLYNKVSRLKDAMADIYPKLQGIKESVQSDFR-HQVSLLVQPMXXXXXXXXXXXXXXXX 2106
             YLY KVSRLKDAM+ I  +LQ +KESVQSD   H  SL + P                 
Sbjct: 527  AYLYAKVSRLKDAMSKIDSQLQEMKESVQSDLXFHATSLGIVP---ALEAAMQHYDADLQ 583

Query: 2107 KRSARTGERPNGF 2145
            KRSA++ ERPNG+
Sbjct: 584  KRSAKSAERPNGY 596


>ref|XP_006452716.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555942|gb|ESR65956.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 533

 Score =  659 bits (1700), Expect = 0.0
 Identities = 346/543 (63%), Positives = 413/543 (76%), Gaps = 1/543 (0%)
 Frame = +1

Query: 328  QVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEGSH 507
            QV  RA+YK  SVKD G  G + M ++K +F PD+  S   L V+F+ I+ HK+TKEGS+
Sbjct: 6    QVTKRAKYK-ISVKDPGTTGALRMNDQKLMFMPDNRNSGAKLVVEFKSIQGHKYTKEGSN 64

Query: 508  KQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSERSA 687
            K  L+NL   +N +G SYIFEFD +SD  VCRDFV KVL K +   +AA       E+SA
Sbjct: 65   KPPLINL---ANAQGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAAL------EKSA 115

Query: 688  VPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMP 867
            V + DEQLS  EM+LR+KLL+E+ ELQKLH+QFV G +LTEAEFWA RKKLL  D +K  
Sbjct: 116  VKLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKS 175

Query: 868  KQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMD 1047
            KQRVGFKSAM++D+RP  DGRTNKVTF+LTPEII QIF EKPAVH+AFLNFVP KM+EM+
Sbjct: 176  KQRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEME 235

Query: 1048 FWTKYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEAD 1227
            FWTKYCRAEYL +TKN               VFLK DDILA E R+K+RRVDPTLDMEAD
Sbjct: 236  FWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEAD 295

Query: 1228 QGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGD-TMT 1404
            +GDDY HLPDHGI RDG+KE+ E + + YRR+LLQDLNRHAAVVLEG+ +DV   D T  
Sbjct: 296  EGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRA 355

Query: 1405 VAEALARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFD 1584
            +AEALARSK+    +E +D NAN+ER +R  R+AEIEDLQAPH  PLAPL IKD REYFD
Sbjct: 356  LAEALARSKR---GNEGADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFD 412

Query: 1585 SQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVLS 1764
            SQQ N LKA  D+ A  K   CSLS ++AYGS+R  IS++K  GL +PIVNPEVA+KV S
Sbjct: 413  SQQANTLKASRDSQASMK---CSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYS 469

Query: 1765 GLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLYN 1944
            GLT ++SS KYHLG NP+E+VLDRLP  TKE+LL+HW SIQELLKHFWSSYPITT YLY+
Sbjct: 470  GLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYS 529

Query: 1945 KVS 1953
            KV+
Sbjct: 530  KVN 532


>ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Brachypodium distachyon]
          Length = 602

 Score =  659 bits (1699), Expect = 0.0
 Identities = 347/603 (57%), Positives = 429/603 (71%), Gaps = 2/603 (0%)
 Frame = +1

Query: 343  ARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEGSHKQA-- 516
            A+YK T++KD G  G++ M E+K  F P+DP S + LNV FR IK HKF K    K    
Sbjct: 8    AKYK-TTLKDPGTTGVLRMNEDKLAFIPNDPRSLMKLNVDFRTIKGHKFNKVDGSKPTPP 66

Query: 517  LLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSERSAVPV 696
            LLNL++DS+ KG  Y+FEFD   +RD+CRDFV +VLGK Q +      P    E+S    
Sbjct: 67   LLNLSKDSD-KGGGYMFEFDNVGNRDLCRDFVARVLGKHQGI--VPPRPNAPPEKSVAAA 123

Query: 697  HDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMPKQR 876
              EQLS+ EME R+KLLRED ELQKLHK+FV+G +L E+EFWATRK LL  + N   KQ+
Sbjct: 124  GPEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEANTASKQK 183

Query: 877  VGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMDFWT 1056
             GF+S MLADVRP  DG+TNKVTF+LT EII QIF EKPAVH+AFL++VPKK+SE DFWT
Sbjct: 184  PGFRSVMLADVRPSADGQTNKVTFSLTNEIIHQIFAEKPAVHRAFLDYVPKKLSEKDFWT 243

Query: 1057 KYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEADQGD 1236
            KYCRAEYL +TKN               +FL++DDI+AKEA+ K++RVDPTLDMEAD GD
Sbjct: 244  KYCRAEYLLRTKNTLAAKAEAADDEELAIFLRNDDIVAKEAKLKIKRVDPTLDMEADAGD 303

Query: 1237 DYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGDTMTVAEA 1416
            DYIHLPDHGILRDGS+ETT+++ +  RR+L QDLNRHAAVVLEG+  DV + D  TVAEA
Sbjct: 304  DYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRKTDVEIADAKTVAEA 363

Query: 1417 LARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFDSQQL 1596
            LARSK     S I+D+ A+ ER  +++RM EIEDLQAP + P APLCIKDPREYFDSQQ 
Sbjct: 364  LARSKTETPCSSIADD-ASHERLLKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQQA 422

Query: 1597 NALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVLSGLTQ 1776
            N L+ LG    G K  +CSLST+ A+  L   IS +KV  L  P+V   VA+KVL+ L +
Sbjct: 423  NPLRPLGGD--GRKARSCSLSTDDAFRHLMDQISSVKVNKLSCPVVQSNVALKVLNELNE 480

Query: 1777 HLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLYNKVSR 1956
             +S ++     NPQ+S+L RLPHRT++EL+ HWT+IQELL+HFWSSYPITTT LYNK+ R
Sbjct: 481  GISRSRRLNLKNPQDSLLGRLPHRTRDELMDHWTAIQELLRHFWSSYPITTTVLYNKIQR 540

Query: 1957 LKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRSARTGERP 2136
            +KDAM  IY KLQ IKES Q D RH++S LV+PM                K S++TG +P
Sbjct: 541  VKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQK-SSKTGNKP 599

Query: 2137 NGF 2145
            NGF
Sbjct: 600  NGF 602


>ref|XP_002310512.2| transcription factor-related family protein [Populus trichocarpa]
            gi|550334091|gb|EEE90962.2| transcription factor-related
            family protein [Populus trichocarpa]
          Length = 603

 Score =  658 bits (1697), Expect = 0.0
 Identities = 352/615 (57%), Positives = 436/615 (70%), Gaps = 5/615 (0%)
 Frame = +1

Query: 316  MSSRQVVMRARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTK 495
            M+S QV  R ++K+ SVKD G PG + +T E+ +F P+ P S   LN++FR +K+HK+TK
Sbjct: 1    MASGQVSKRVKFKS-SVKDPGTPGRLYLTLERLMFKPNSPNSATKLNMEFRFVKNHKYTK 59

Query: 496  EGSHKQALLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINS 675
            EGS+K  +LNLT     +G SYIFEF+ + D  VC++ VGK L K          P   S
Sbjct: 60   EGSNKAPMLNLTSS---QGVSYIFEFESYDDLHVCKECVGKALSKT----GETPKPIDTS 112

Query: 676  ERSAVPVHDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDV 855
            E     V  EQ ST E+ LR+ +L+E+ ELQ LHK+FV  G+LTEAEFWATRKKLL G+ 
Sbjct: 113  E-----VPSEQPSTEELLLRMNMLQENSELQNLHKRFVSDGILTEAEFWATRKKLLGGNF 167

Query: 856  NKMPKQRVGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKM 1035
            +K  KQR G KS +L+D +P  DGRTNKVTF LTPEI++++F EKPAVH+A+L+ VPKKM
Sbjct: 168  SKKSKQRTGLKSFVLSDTKPSTDGRTNKVTFTLTPEIVREVFAEKPAVHRAYLDLVPKKM 227

Query: 1036 SEMDFWTKYCRAEYLHKTKNXXXXXXXXXXXXXXX---VFLKHDDILAKEARRKVRRVDP 1206
            SE DFW+KYCRAEYL   KN                  +FLK DDILA E RRK+R VDP
Sbjct: 228  SERDFWSKYCRAEYLQHAKNANAAAAAAAEAAEDEELALFLKPDDILASETRRKIRCVDP 287

Query: 1207 TLDMEADQGDDYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVA 1386
            TL+MEAD+GDDY HLPDHGI+RDGSKE TES+++ Y R+L Q+LNRHAAVVL+G  +D  
Sbjct: 288  TLNMEADEGDDYTHLPDHGIVRDGSKEITESQHELYIRTLSQELNRHAAVVLQGTPIDEE 347

Query: 1387 -LGDTMTVAEALARSKQAELAS-EISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCI 1560
             L DT TVAEAL +SKQ + AS E +D NANQ+R  R+S+M EI+DLQA  + PLAPL I
Sbjct: 348  QLKDTQTVAEALKQSKQGQNASNEETDMNANQDRLSRISKMMEIDDLQASSDLPLAPLSI 407

Query: 1561 KDPREYFDSQQLNALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNP 1740
            KDPR+YFDSQQ  ALK   DT  GT P+   LS E++Y SLR  IS +K  GL++PI+ P
Sbjct: 408  KDPRDYFDSQQATALKNSRDTSIGTDPVKRILSAEESYASLRDSISLIKTTGLVDPIIKP 467

Query: 1741 EVAVKVLSGLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYP 1920
            EVAVKVLS LT ++SS KY  G N   SVLD LP+  KEELL+HWTS+QELLKH+WSSYP
Sbjct: 468  EVAVKVLSVLTHNISSTKYDTGKNHGLSVLDTLPNTIKEELLYHWTSLQELLKHYWSSYP 527

Query: 1921 ITTTYLYNKVSRLKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXX 2100
            ITTTYLY KVSRLKDAM+ I  +LQ +KESVQSD RHQV+LL++PM              
Sbjct: 528  ITTTYLYTKVSRLKDAMSKIDSQLQELKESVQSDLRHQVTLLLRPMQQALEAAMQHYDAE 587

Query: 2101 XXKRSARTGERPNGF 2145
              KRSAR+G+R NG+
Sbjct: 588  LQKRSARSGDRSNGY 602


>dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  654 bits (1688), Expect = 0.0
 Identities = 351/603 (58%), Positives = 434/603 (71%), Gaps = 2/603 (0%)
 Frame = +1

Query: 343  ARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEGSHKQ--A 516
            A+YK T +KD G  G++ M+E+KF FTP+DP S + L+V F+ IK HKF K    K   A
Sbjct: 4    AKYKAT-LKDRGTGGVLRMSEDKFTFTPNDPRSLMKLSVDFQTIKGHKFNKVDGSKPTPA 62

Query: 517  LLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSERSAVPV 696
            LLNL++DS+ KG  YIFEFD   +RD+CRDFV +VLGK Q    A   P +  E SAV  
Sbjct: 63   LLNLSKDSD-KGGGYIFEFDNVGNRDLCRDFVARVLGKYQGTVPA--RPNVPPELSAVST 119

Query: 697  HDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMPKQR 876
              EQLS+ EME R+KLLRED ELQKLHK+FV+G +L E+EFWATRK LL  + +K  KQ+
Sbjct: 120  GPEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDETSKGSKQK 179

Query: 877  VGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMDFWT 1056
             GFKSAMLADVRP  DG+TNKVTF+LT EII QIF EKPAVH+AFL++VPKK+SE DFWT
Sbjct: 180  PGFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAEKPAVHRAFLDYVPKKLSEKDFWT 239

Query: 1057 KYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEADQGD 1236
            KYCRAEYL +TKN               +FLK+DDILAKEA+ K++RVDPTLDMEAD GD
Sbjct: 240  KYCRAEYLLRTKNTLAAKAEAAEDEELAMFLKNDDILAKEAKLKIKRVDPTLDMEADAGD 299

Query: 1237 DYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGDTMTVAEA 1416
            DYIHLPDHGILRDGS+ETT+++ +  RR+L QDLNRHAAVVLEG++ D+   DT TVAEA
Sbjct: 300  DYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRSADIESTDTKTVAEA 359

Query: 1417 LARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFDSQQL 1596
            LARSK+    S ++D+ A+ ER  + +RM EIEDLQAP + P A LCIKDPREYFDSQQ 
Sbjct: 360  LARSKKEPPPSSVADD-ASHERLVKAARMTEIEDLQAPRSLPYALLCIKDPREYFDSQQA 418

Query: 1597 NALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVLSGLTQ 1776
            NAL+ LG    G K  +CSLST+ A+  L   IS +K+     P+V  +VA+KVL+ L +
Sbjct: 419  NALRPLGSN-DGRKARSCSLSTDDAFRHLMDQISSVKMN---CPVVQSDVALKVLNELNE 474

Query: 1777 HLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLYNKVSR 1956
             +S ++     NPQ+S+L RLPHRT++EL+ HW +IQELL+HFWSSYPITTT L NKV R
Sbjct: 475  GISRSRRLNLKNPQDSLLGRLPHRTRDELMDHWMAIQELLRHFWSSYPITTTVLCNKVQR 534

Query: 1957 LKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRSARTGERP 2136
            LK+AM  IY KLQ IKES Q D RH++S LV+PM                K S++ G +P
Sbjct: 535  LKEAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHEHDQQQK-SSKAGSKP 593

Query: 2137 NGF 2145
            NGF
Sbjct: 594  NGF 596


>gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indica Group]
            gi|222640385|gb|EEE68517.1| hypothetical protein
            OsJ_26954 [Oryza sativa Japonica Group]
          Length = 625

 Score =  654 bits (1688), Expect = 0.0
 Identities = 352/624 (56%), Positives = 433/624 (69%), Gaps = 23/624 (3%)
 Frame = +1

Query: 343  ARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEGSHKQA-- 516
            A+YK T++KD G  G++ M E+KF FTP DP S + LNV FR IK HKF K    K A  
Sbjct: 8    AKYK-TTLKDPGTTGVLRMNEDKFTFTPHDPRSAMKLNVDFRSIKGHKFNKVDGSKPAPP 66

Query: 517  LLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSERSAVPV 696
            LLNL++DS+ KG  Y+FEFD  ++RD+ RDFV KVLGK Q   +    P +  E S    
Sbjct: 67   LLNLSKDSD-KGGGYMFEFDNVTNRDLSRDFVAKVLGKQQG--TIPPKPNVPPENSVTST 123

Query: 697  HDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMPKQR 876
             +EQLS  EM+ R+KLL+ED ELQKLH +FV+G +L E+EFWATRK LL  + NK  KQR
Sbjct: 124  GEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDEANKGSKQR 183

Query: 877  VGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMDFWT 1056
             GFKSAMLADVRP  DGRTNKVTF+LT EII QIF EKPAVH+AFL+FVPKKMSE DFWT
Sbjct: 184  PGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKKMSEKDFWT 243

Query: 1057 KYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEADQGD 1236
            KY RAEYL +TKN               +FLK+DDILAKEAR K++RVDPTLDMEAD GD
Sbjct: 244  KYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTLDMEADAGD 303

Query: 1237 DYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGDTMTVAEA 1416
            DYIHLPDHGI+RDGSKET +++ +  RR+L QDLNRHAAVVLEG++ DV L DT TVAEA
Sbjct: 304  DYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTVAEA 363

Query: 1417 LARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFDSQQL 1596
            +ARSK+   +S ISD+  N ER  +++RM EIEDLQAP + P APLCIKDPREYFDSQQ 
Sbjct: 364  IARSKKEPPSSSISDD-TNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQQA 422

Query: 1597 NALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVK------- 1755
            NAL++LG    G    NC LST+ A+  L   IS +KV GL  P++  +VA+K       
Sbjct: 423  NALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVALKKLMMKAA 482

Query: 1756 --------------VLSGLTQHLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQEL 1893
                          VL+ L + +S ++     NPQ+S+L ++P RT++EL+ HW +IQEL
Sbjct: 483  FEDHVDIQITCDWRVLNELNEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDHWAAIQEL 542

Query: 1894 LKHFWSSYPITTTYLYNKVSRLKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXX 2073
            L+HFWSSYPITT+ LYNKV R+KDAM  IY KLQ IKES Q D RH++S LV+PM     
Sbjct: 543  LQHFWSSYPITTSVLYNKVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALD 602

Query: 2074 XXXXXXXXXXXKRSARTGERPNGF 2145
                       K S+++G +PNGF
Sbjct: 603  AAFNHDLEQQQK-SSKSGNKPNGF 625


>dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  652 bits (1682), Expect = 0.0
 Identities = 348/603 (57%), Positives = 433/603 (71%), Gaps = 2/603 (0%)
 Frame = +1

Query: 343  ARYKNTSVKDTGVPGIVIMTEEKFLFTPDDPMSTVNLNVQFRLIKSHKFTKEGSHKQA-- 516
            A+YK T++KD G  G++ M+E+K +FTP+DP S + L+V FR IK HKF K    K    
Sbjct: 8    AKYK-TTLKDPGHGGVLRMSEDKLIFTPNDPRSLMKLSVDFRSIKGHKFNKVDGSKPTPP 66

Query: 517  LLNLTQDSNVKGASYIFEFDKFSDRDVCRDFVGKVLGKLQAMQSAAKNPTINSERSAVPV 696
            LLNL++ S+ KG  YIFEFD   +RD+CRDFV +VLGK Q    A   P +  E+ AV  
Sbjct: 67   LLNLSKVSD-KGGGYIFEFDNVGNRDLCRDFVARVLGKHQGTVPA--RPNVPPEKLAVST 123

Query: 697  HDEQLSTTEMELRVKLLREDIELQKLHKQFVIGGVLTEAEFWATRKKLLAGDVNKMPKQR 876
              EQLS+ EME R+KLLRED ELQKLHK+FV+G +L E+EFWATRK LL  + NK  KQ+
Sbjct: 124  GPEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDETNKSSKQK 183

Query: 877  VGFKSAMLADVRPLPDGRTNKVTFNLTPEIIQQIFTEKPAVHQAFLNFVPKKMSEMDFWT 1056
             GFKSAMLADVRP  DG+TNKVTF+LT EII QIF EKPAVH+AFL++VPKK+SE DFWT
Sbjct: 184  PGFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAEKPAVHRAFLDYVPKKLSEKDFWT 243

Query: 1057 KYCRAEYLHKTKNXXXXXXXXXXXXXXXVFLKHDDILAKEARRKVRRVDPTLDMEADQGD 1236
            KYCRAEYL +TKN               +FLK+DDILAKEA+ K++RVDPTLDMEAD GD
Sbjct: 244  KYCRAEYLLRTKNTLAAKAEAADDEELAMFLKNDDILAKEAKLKIKRVDPTLDMEADAGD 303

Query: 1237 DYIHLPDHGILRDGSKETTESEYDEYRRSLLQDLNRHAAVVLEGKALDVALGDTMTVAEA 1416
            DYIHLPDHGILRDGS+ETT+++ +  RR+L QDLNRHAAVVLEG++ D+   DT TVAEA
Sbjct: 304  DYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRSTDIESTDTKTVAEA 363

Query: 1417 LARSKQAELASEISDENANQERSERLSRMAEIEDLQAPHNYPLAPLCIKDPREYFDSQQL 1596
            LARSK+    S ++D+ A+ ER  + +RM E+EDLQAP + P APLCIKDPREYFDSQQ 
Sbjct: 364  LARSKKEPPPSSVADD-ASHERLVKAARMTELEDLQAPRSLPYAPLCIKDPREYFDSQQA 422

Query: 1597 NALKALGDTVAGTKPINCSLSTEQAYGSLRKLISDMKVKGLINPIVNPEVAVKVLSGLTQ 1776
            NAL+ LG+   G K  +CSLS + A+  L   IS +K+     P+V  +VA+KVL+ L +
Sbjct: 423  NALRPLGNN-DGRKARSCSLSADDAFRHLMDQISSVKMN---CPVVQADVALKVLNELNE 478

Query: 1777 HLSSAKYHLGNNPQESVLDRLPHRTKEELLHHWTSIQELLKHFWSSYPITTTYLYNKVSR 1956
             +S ++     NPQ+S+L RLPHRT++EL+ HWT+IQELL+HFWSSYPITT  L NKV R
Sbjct: 479  GISRSRRLNLKNPQDSLLGRLPHRTRDELMDHWTAIQELLRHFWSSYPITTAVLSNKVQR 538

Query: 1957 LKDAMADIYPKLQGIKESVQSDFRHQVSLLVQPMXXXXXXXXXXXXXXXXKRSARTGERP 2136
            LK+AM  IY KLQ IKES Q D RH++S LV+PM                 +S  TG +P
Sbjct: 539  LKEAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFYHDQQQKSSKSG-TGSKP 597

Query: 2137 NGF 2145
            NGF
Sbjct: 598  NGF 600