BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00013280
         (1398 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003208050.1| putative polyprotein [Pelargonium vein bandi...    95   8e-17
ref|YP_610965.1| hypothetical protein DMV_gp3 [Dracaena mottle v...    93   3e-16
emb|CAC41321.2| unnamed protein product [Rice tungro bacilliform...    90   3e-15
gb|AFQ62092.1| P194 [Rice tungro bacilliform virus]                    90   3e-15
gb|ADV58678.1| P194 [Rice tungro bacilliform virus]                    90   3e-15
emb|CAY56550.1| P194 protein [Rice tungro bacilliform virus]           90   3e-15
dbj|BAA01607.1| 194K polypeptide [Rice tungro bacilliform virus]...    89   4e-15
gb|AAD30198.1|AF113832_3 polyprotein P194 [Rice tungro bacillifo...    89   4e-15
gb|AAD30190.1|AF113830_3 polyprotein P194 [Rice tungro bacillifo...    89   4e-15
gb|AAB03094.1| ORF3 [Rice tungro bacilliform virus]                    89   4e-15
ref|NP_056762.1| hypothetical protein [Rice tungro bacilliform v...    89   4e-15
gb|AAD30194.1|AF113831_3 polyprotein P194 [Rice tungro bacillifo...    89   6e-15
gb|AAC27711.1| polyprotein [Rice tungro bacilliform virus]             88   1e-14
ref|NP_758808.1| polyprotein [Taro bacilliform virus] gi|2581483...    88   1e-14
ref|XP_006858540.1| hypothetical protein AMTR_s00071p00160380 [A...    87   2e-14
ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus] gi|16...    86   4e-14
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]                85   7e-14
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]                85   9e-14
gb|ACH86210.1| unknown [Citrus yellow mosaic virus]                    85   9e-14
gb|AER00538.1| ORF III [Citrus yellow mosaic virus]                    84   1e-13

>ref|YP_003208050.1| putative polyprotein [Pelargonium vein banding virus]
            gi|258547408|gb|ACV74337.1| putative polyprotein
            [Pelargonium vein banding virus]
          Length = 1970

 Score = 94.7 bits (234), Expect = 8e-17
 Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
 Frame = +3

Query: 609  LETIVDIG*QIEALRTSKLDFLKPSILYNTGWDSKAV--LYGHYKEEPIKCSSGDSVELR 782
            LE+ +D   +I+  +  + + +   +LY  GW S  +  +Y HY EE I  S+G+ VEL 
Sbjct: 254  LESELDPEAEIQLSQRRRANMVPAEVLYEEGWSSTRLHRVYQHYSEERI-LSTGEQVELP 312

Query: 783  LIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTNHLD*EQSSLVTLE 962
             + R S   L +     IHLG +++RV  LHR + G K   V  DT   D ++S + ++E
Sbjct: 313  FVTRRSYERLQRTGYQQIHLGLVLIRVHTLHRRDAGVKALVVFRDTRWRD-DRSIIGSME 371

Query: 963  LDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
            +D++ G  + Y  PD      DFYNH+ +   T+GY+
Sbjct: 372  IDLSIGTQLAYIAPDMMMSIHDFYNHVEVVVATRGYE 408


>ref|YP_610965.1| hypothetical protein DMV_gp3 [Dracaena mottle virus]
            gi|92430216|gb|ABE77344.1| hypothetical protein [Dracaena
            mottle virus]
          Length = 1916

 Score = 92.8 bits (229), Expect = 3e-16
 Identities = 52/156 (33%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
 Frame = +3

Query: 609  LETIVDIG*QIEALRTSKLDFLKPSILYNTGWDSKA-VLYGHYKEEPIKCSSGDSVELRL 785
            LE  +D   Q++  +  K   +   +LY+ GW S    +Y HY E+ +    G  VEL  
Sbjct: 60   LEQHIDPNEQLQLSQKKKAAIVPAEVLYDDGWHSTVHKVYQHYDEQRVLVLEGQQVELPF 119

Query: 786  IERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTNHLD*EQSSLVTLEL 965
            I   S   LL     +IH+G ++VRV  LH  + GT     L DT      +  + ++E+
Sbjct: 120  INEQSYRQLLSSGFQHIHVGMVLVRVHALHSRHAGTMALLCLRDTRWKS-SRGIIGSMEV 178

Query: 966  DMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
            D+ AG  ++Y VPD     +DFYNHI +   T GY+
Sbjct: 179  DLTAGSQLVYVVPDILLSVQDFYNHIEVVVMTHGYQ 214


>emb|CAC41321.2| unnamed protein product [Rice tungro bacilliform virus]
          Length = 1674

 Score = 89.7 bits (221), Expect = 3e-15
 Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ KS  + E I  +D+  +IE    +KL  +K + LY   W  KA L        YKEE
Sbjct: 24   KKGKSSTKRELIEEIDVAKEIENFDWNKLSGIKSNKLYEKNWQEKAKLKQQSIISAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  ++   +         +++  +  L Y H+G + + +K LHR  +GTKV  +  D +
Sbjct: 84   AISVTTNAFITSLFPNEVIKNVKNQGKL-YYHIGMMAIGIKGLHRKKIGTKVMVMFYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                +++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKAKEASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>gb|AFQ62092.1| P194 [Rice tungro bacilliform virus]
          Length = 1674

 Score = 89.7 bits (221), Expect = 3e-15
 Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ KS  + E I  +D+  +IE    +KL  +K + LY   W  KA L        YKEE
Sbjct: 24   KKGKSSTKRELIEEIDVAKEIENFDWNKLSGIKSNKLYEKNWQEKAKLKQQSIISAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  ++   +         +++  +  L Y H+G + + +K LHR  +GTKV  +  D +
Sbjct: 84   AISVTTNAFITSLFPNEVIKNVKNQGKL-YYHIGMMAIGIKGLHRKKIGTKVMVMFYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                +++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKAKEASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>gb|ADV58678.1| P194 [Rice tungro bacilliform virus]
          Length = 1674

 Score = 89.7 bits (221), Expect = 3e-15
 Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ KS  + E I  +D+  +IE    +KL  +K + LY   W  KA L        YKEE
Sbjct: 24   KKGKSSTKRELIEEIDVAKEIENFDWNKLSGIKSNKLYEKNWQEKAKLKQQSIISAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  ++   +         +++  +  L Y H+G + + +K LHR  +GTKV  +  D +
Sbjct: 84   AISVTTNAFITSLFPNEVIKNVKNQGKL-YYHIGMMAIGIKGLHRKKIGTKVMVMFYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                +++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKAKEASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>emb|CAY56550.1| P194 protein [Rice tungro bacilliform virus]
          Length = 1674

 Score = 89.7 bits (221), Expect = 3e-15
 Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ KS  + E I  +D+  +IE    +KL  +K + LY   W  KA L        YKEE
Sbjct: 24   KKGKSSTKRELIERIDVAKEIENFDWNKLSGIKSNKLYEKNWQEKAKLKQQSIISAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  ++   +         +++  +  L Y H+G + + +K LHR  +GTKV  +  D +
Sbjct: 84   AISVTTNAFITSLFPNEVIKNVKNQGKL-YYHIGMMAIGIKGLHRKKIGTKVMVMFYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                +++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKAKEASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>dbj|BAA01607.1| 194K polypeptide [Rice tungro bacilliform virus]
            gi|229052|prf||1817177A capsid protein
          Length = 1675

 Score = 89.4 bits (220), Expect = 4e-15
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ K+  + E I  VD+  ++E     KL  +KP+ LY   W  K  L        YKEE
Sbjct: 24   KKGKNSTKRELIEEVDVNQEVENFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  +          +   +++  +  L Y H+G + + VK LHR  +GTKV  +  D +
Sbjct: 84   AISVTHNAYTTTLFPQEVIKNVKNQGKL-YYHIGMMAIGVKGLHRRKIGTKVMIMFYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                 ++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKAREASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>gb|AAD30198.1|AF113832_3 polyprotein P194 [Rice tungro bacilliform virus]
          Length = 1677

 Score = 89.4 bits (220), Expect = 4e-15
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ K+  + E I  VD+  ++E     KL  +KP+ LY   W  K  L        YKEE
Sbjct: 24   KKGKNSTKRELIEEVDVNQEVENFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  +          +   +++  +  L Y H+G + + VK LHR  +GTKV  +  D +
Sbjct: 84   AISVTHNAYTTTLFPQEVIKNVKNQGKL-YYHIGMMAIGVKGLHRRKIGTKVMIMFYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                 ++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKAREASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>gb|AAD30190.1|AF113830_3 polyprotein P194 [Rice tungro bacilliform virus]
          Length = 1677

 Score = 89.4 bits (220), Expect = 4e-15
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ K+  + E I  VD+  ++E     KL  +KP+ LY   W  K  L        YKEE
Sbjct: 24   KKGKNSTKRELIEEVDVNQEVENFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  +          +   +++  +  L Y H+G + + VK LHR  +GTKV  +  D +
Sbjct: 84   AISVTHNAYTTTLFPQEVIKNVKNQGKL-YYHIGMMAIGVKGLHRRKIGTKVMIMFYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                 ++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKAREASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>gb|AAB03094.1| ORF3 [Rice tungro bacilliform virus]
          Length = 1675

 Score = 89.4 bits (220), Expect = 4e-15
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ K+  + E I  VD+  ++E     KL  +KP+ LY   W  K  L        YKEE
Sbjct: 24   KKGKNSTKRELIEEVDVNQEVENFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  +          +   +++  +  L Y H+G + + VK LHR  +GTKV  +  D +
Sbjct: 84   AISVTHNAYTTTLFPQEVIKNVKNQGKL-YYHIGMMAIGVKGLHRRKIGTKVMIMFYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                 ++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKAREASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>ref|NP_056762.1| hypothetical protein [Rice tungro bacilliform virus]
            gi|130653|sp|P27502.1|POL_RTBVP RecName: Full=Polyprotein
            P3; AltName: Full=P194 protein; Contains: RecName:
            Full=Putative movement protein; Short=MP; Contains:
            RecName: Full=Capsid protein; AltName: Full=Coat protein;
            Short=CP; Contains: RecName: Full=Protease; Short=PR;
            Contains: RecName: Full=Reverse
            transcriptase/Ribonuclease H; Short=RT; AltName:
            Full=p55; Flags: Precursor gi|61913|emb|CAA40997.1| ORF
            P194 [Rice tungro bacilliform virus]
          Length = 1675

 Score = 89.4 bits (220), Expect = 4e-15
 Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ K+  + E I  VD+  ++E     KL  +KP+ LY   W  K  L        YKEE
Sbjct: 24   KKGKNSTKRELIEEVDVNQEVENFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  +          +   +++  +  L Y H+G + + VK LHR  +GTKV  +  D +
Sbjct: 84   AISVTHNAYTTTLFPQEVIKNVKNQGKL-YYHIGMMAIGVKGLHRRKIGTKVMIMFYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                 ++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKAREASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>gb|AAD30194.1|AF113831_3 polyprotein P194 [Rice tungro bacilliform virus]
          Length = 1675

 Score = 88.6 bits (218), Expect = 6e-15
 Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ K+  + E I  +D+  ++E     KL  +KP+ LY   W  K  L        YKEE
Sbjct: 24   KKGKNSTKRELIEEIDVNQEVENFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  +          +   +++  +  L Y H+G + + VK LHR  +GTKV  +  D +
Sbjct: 84   AISVTHNAYTTTLFPQEVIKNVKNQGKL-YYHIGMMAIGVKGLHRRKIGTKVMIMFYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                 ++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKARKASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>gb|AAC27711.1| polyprotein [Rice tungro bacilliform virus]
          Length = 1675

 Score = 87.8 bits (216), Expect = 1e-14
 Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
 Frame = +3

Query: 585  KRDKSLVQLETI--VDIG*QIEALRTSKLDFLKPSILYNTGWDSKAVL-----YGHYKEE 743
            K+ K+  + E I  VD+   +E     KL  +KP+ LY   W  K  L        YKEE
Sbjct: 24   KKGKNSTKRELIEEVDVNQDVENFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEE 83

Query: 744  PIKCSSGDSVELRLIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTN 923
             I  +          +   +++  +  L Y H+G + + VK LHR  +GTKV  +  D +
Sbjct: 84   AISVTHNAYTTTLFPQEVIKNVKNQGKL-YYHIGMMAIGVKGLHRRKIGTKVMIMSYDDS 142

Query: 924  HLD*EQSSLVTLELDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
                 ++S+ ++E+DMNAG G+ Y  PD+AK  +D  +H+++G QT GY+
Sbjct: 143  FGKAREASIGSIEMDMNAGCGVFYSCPDFAKYIKDL-SHLKIGIQTLGYE 191


>ref|NP_758808.1| polyprotein [Taro bacilliform virus]
            gi|25814833|gb|AAN75640.1|AF357836_3 polyprotein [taro
            bacilliform virus]
          Length = 1881

 Score = 87.8 bits (216), Expect = 1e-14
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
 Frame = +3

Query: 609  LETIVDIG*QIEALRTSKLDFLKPSILYNTGWDSK-AVLYGHYKEEPIKCSS-GDSVELR 782
            LE+ ++   +I   +  +   +   +LYNT   ++   +Y HY EE I C+     + L 
Sbjct: 54   LESQINPEAEIRLSQQRRAAMVPAEVLYNTSPSTRNQKVYQHYSEERILCTGQNQQLNLP 113

Query: 783  LIERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTNHLD*EQSSLVTLE 962
             I   S   L +    ++H+G +++RV PLHR N GT    V  D    D ++S + T+E
Sbjct: 114  FINESSYRALRESGQQHLHIGLIMIRVHPLHRRNAGTTALIVPRDIRWND-DRSIIGTME 172

Query: 963  LDMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYKMLHS 1085
            +D++AG  I+Y  P+      DFY +I+L  QT+GY+  +S
Sbjct: 173  IDLSAGSQIVYIAPNIMLSVEDFYRNIQLAIQTQGYENWNS 213


>ref|XP_006858540.1| hypothetical protein AMTR_s00071p00160380 [Amborella trichopoda]
            gi|548862649|gb|ERN20007.1| hypothetical protein
            AMTR_s00071p00160380 [Amborella trichopoda]
          Length = 899

 Score = 86.7 bits (213), Expect = 2e-14
 Identities = 43/156 (27%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
 Frame = +3

Query: 609  LETIVDIG*QIEALRTSKLDFLKPSILYNTGW-DSKAVLYGHYKEEPIKCSSGDSVELRL 785
            LE+ +D   +I   +  + + +    LY+  W + +  +Y HY E  I C+    V+++ 
Sbjct: 228  LESQLDPQAEISLSQRRRANMVPAETLYDASWSEPQHQVYQHYSESRILCTGEQQVDMQF 287

Query: 786  IERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTNHLD*EQSSLVTLEL 965
            I   S   L +  + ++H+G +++R++ LHR++ GT    V+ DT   D +++ + T+E 
Sbjct: 288  INSQSYEKLRRAGMQHVHIGLIMIRIQALHRSDAGTNALIVIRDTRWPD-DRAVIGTMEA 346

Query: 966  DMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGYK 1073
            D+     ++Y  P+      DF+NHI++  QT+GY+
Sbjct: 347  DLTTRTQLVYIAPNMMLSLVDFHNHIQISIQTQGYE 382


>ref|NP_569153.1| poplyprotein [Citrus yellow mosaic virus]
            gi|16416939|gb|AAL18495.1|AF347695_3 unknown [citrus
            yellow mosaic virus]
          Length = 1983

 Score = 85.9 bits (211), Expect = 4e-14
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
 Frame = +3

Query: 609  LETIVDIG*QIEALRTSKLDFLKPSILYNTGWDSKA-VLYGHYKEEPIKCSSGDSVELRL 785
            LE +VD    ++     +   +   +LY +  D +   +Y H  EE I C  GD V+  L
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRTDDRHHQVYIHKSEEAILCVDGDQVDRLL 122

Query: 786  IERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTNHLD*EQSSLVTLEL 965
            I+  S   L +  +++IH+G + VR++ LHR + GT    V  D N    +QS   T+EL
Sbjct: 123  IQPESAEQLSRSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRD-NRWQGDQSIFATMEL 181

Query: 966  DMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGY 1070
            D+  G  ++Y +PD     RDF  ++++   TKGY
Sbjct: 182  DLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGY 216


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score = 85.1 bits (209), Expect = 7e-14
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
 Frame = +3

Query: 609  LETIVDIG*QIEALRTSKLDFLKPSILYNTGWDSKA-VLYGHYKEEPIKCSSGDSVELRL 785
            LE +VD    ++     +   +   +LY +  D +   +Y H  EE I C  GD V+  L
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLL 122

Query: 786  IERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTNHLD*EQSSLVTLEL 965
            I+  S   L +  +++IH+G + VR++ LHR + GT    V  D N    +QS   T+EL
Sbjct: 123  IQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRD-NRWQGDQSIFATMEL 181

Query: 966  DMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGY 1070
            D+  G  ++Y +PD     RDF  ++++   TKGY
Sbjct: 182  DLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGY 216


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score = 84.7 bits (208), Expect = 9e-14
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
 Frame = +3

Query: 609  LETIVDIG*QIEALRTSKLDFLKPSILYNTGWDSKA-VLYGHYKEEPIKCSSGDSVELRL 785
            LE +VD    ++     +   +   +LY +  D +   +Y H  EE I C  GD V+  L
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILCVDGDQVDRLL 122

Query: 786  IERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTNHLD*EQSSLVTLEL 965
            I+  S   L +  +++IH+G + VR++ LHR + GT    V  D N    +QS   T+EL
Sbjct: 123  IQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRD-NRWQGDQSIFATMEL 181

Query: 966  DMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGY 1070
            D+  G  ++Y +PD     RDF  ++++   TKGY
Sbjct: 182  DLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGY 216


>gb|ACH86210.1| unknown [Citrus yellow mosaic virus]
          Length = 463

 Score = 84.7 bits (208), Expect = 9e-14
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 1/155 (0%)
 Frame = +3

Query: 609  LETIVDIG*QIEALRTSKLDFLKPSILYNTGWDSKA-VLYGHYKEEPIKCSSGDSVELRL 785
            LE +VD    ++     +   +   +LY +  D +   +Y H  EE I C  GD V+  L
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILCVDGDQVDRLL 122

Query: 786  IERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTNHLD*EQSSLVTLEL 965
            I+  S   L +  +++IH+G + VR++ LHR + GT    V  D N    +QS   T+EL
Sbjct: 123  IQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVVFRD-NRWQGDQSIFATMEL 181

Query: 966  DMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGY 1070
            D+  G  ++Y +PD     RDF  ++++   TKGY
Sbjct: 182  DLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGY 216


>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
          Length = 1982

 Score = 84.0 bits (206), Expect = 1e-13
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
 Frame = +3

Query: 609  LETIVDIG*QIEALRTSKLDFLKPSILYNTGWDSKA-VLYGHYKEEPIKCSSGDSVELRL 785
            LE +VD    ++     +   +   +LY +  D +   +Y H  EE I C  GD V+  L
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLL 122

Query: 786  IERGSQSLLLKEHLNYIHLGCLVVRVKPLHRNNLGTKVHFVLMDTNHLD*EQSSLVTLEL 965
            I+  S   L +  + +IH+G + VR++ LHR + GT    V  D N    +QS   T+EL
Sbjct: 123  IQPESAEQLNRSGMPFIHMGIVQVRIQILHRQHEGTTALVVFRD-NRWQGDQSIFATMEL 181

Query: 966  DMNAGGGIIYFVPDYAKMTRDFYNHIRLGTQTKGY 1070
            D+  G  ++Y +PD     RDF  ++++   TKGY
Sbjct: 182  DLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGY 216