BLASTX nr result
ID: Cocculus23_contig00013261
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00013261
(2972 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 150 7e-73
ref|XP_007048683.1| DNA/RNA polymerases superfamily protein [The... 165 2e-70
ref|XP_007220384.1| hypothetical protein PRUPE_ppa021778mg [Prun... 154 4e-69
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 147 2e-67
ref|XP_007226836.1| hypothetical protein PRUPE_ppa017565mg, part... 144 2e-65
ref|XP_007010495.1| Uncharacterized protein TCM_044370 [Theobrom... 162 2e-65
emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera] 170 1e-57
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 169 4e-57
ref|XP_007198961.1| hypothetical protein PRUPE_ppa020671mg, part... 139 5e-57
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 167 2e-56
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 165 2e-56
ref|XP_007207981.1| hypothetical protein PRUPE_ppa015715mg, part... 170 4e-56
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 166 2e-55
emb|CAN79389.1| hypothetical protein VITISV_004909 [Vitis vinifera] 164 2e-55
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 165 3e-55
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 164 5e-55
ref|XP_007019474.1| Uncharacterized protein TCM_035549 [Theobrom... 161 5e-55
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 164 6e-55
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 162 1e-54
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 160 2e-54
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 150 bits (378), Expect(3) = 7e-73
Identities = 83/207 (40%), Positives = 121/207 (58%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+ +FW++L KL+ TKL FS+++HPQ +GQTEVTN +L +LR LV ++ WDLKL+
Sbjct: 1233 KFMGYFWKTLWKLLKTKLLFSTSHHPQTDGQTEVTNRTLGRILRCLVSKSLKDWDLKLAA 1292
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
AEF N A +++ PFEVVYG+ P LDL+ P ++ A EQL ++H+
Sbjct: 1293 AEFAFNRAPSTATGHSPFEVVYGVNPLMPLDLSSVPKEN-INLDAMKRAEQLLKLHETVK 1351
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+ ++Y+ + EF+ GD V L K+ A NKL R GPFE++EKI
Sbjct: 1352 RQIERTNEQYQKHLKVPKGKKEFEPGDLVWIHLRKERFPAKRKNKLMPRSDGPFEVVEKI 1411
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISY 1687
P+AY++ LP + FNV L Y
Sbjct: 1412 GPSAYKIDLPGDYGVHGTFNVGDLSPY 1438
Score = 101 bits (251), Expect(3) = 7e-73
Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSS---ILRQLQ 2799
F F K+K + V DALSRRH+L + V G + +ELY +DP FS +
Sbjct: 1005 FTFSSKYKEGKKNVVADALSRRHSLLSVMSNRVLGFEFMKELYKEDPDFSEEWITQTEGH 1064
Query: 2798 ENGHTKFFLHDGYLFKGAQLCVPDCSFHLQIIQELHG---ERHVGRDRTLELVSRSYFWP 2628
+N +K+ L +G+LF+G +LCVP S+ +I+E+H H G +TLE++ ++WP
Sbjct: 1065 KNQGSKYLLQEGFLFQGNKLCVPRGSYRDLLIREVHSGGMGGHFGVQKTLEILQDQFYWP 1124
Query: 2627 SLRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDF 2490
+ +V + R Q+SK + G Y P P+ PW ++SMDF
Sbjct: 1125 RMMGDVQIILRRCSKCQLSK-SSFQPGPYTPLPVPSKPWEDLSMDF 1169
Score = 74.3 bits (181), Expect(3) = 7e-73
Identities = 35/62 (56%), Positives = 45/62 (72%)
Frame = -2
Query: 2503 LAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAVNVAVLFFHEVYRLHRLPS 2324
L+ F + LPRTQR D + VVVD+FSKMAHF+ CK T DAV+VA LF E+ RLH +P
Sbjct: 1165 LSMDFIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDAVSVAELFLKEIVRLHGVPK 1224
Query: 2323 SM 2318
++
Sbjct: 1225 TI 1226
>ref|XP_007048683.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508700944|gb|EOX92840.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 647
Score = 165 bits (417), Expect(2) = 2e-70
Identities = 88/229 (38%), Positives = 133/229 (58%)
Frame = -3
Query: 2373 LQFCSFMRSTGCIDYLLPCF*QRFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCS 2194
L FC +R G ++ +F+ HFWR+L + T+L +SS HPQ +GQTEV N S
Sbjct: 405 LFFCEVVRLHGIPTSIVSDRDVKFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRS 464
Query: 2193 LSDLLRSLVGDNVWQWDLKLSQAEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPST 2014
L ++LR L+ +N WDL + QAEF +N++ N S K PFEV YGL P+++LDL P P
Sbjct: 465 LGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEVAYGLKPQHVLDLVPLPQE 524
Query: 2013 V*VHGKAEDFVEQLQQIHQKTHDHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNI 1834
V + E F +++IH++ L +Y ++ R EF+ GD V L ++
Sbjct: 525 ARVSNEGELFAYHIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERF 584
Query: 1833 RAYEYNKLAARKVGPFEIIEKINPNAYRLKLPSNIRTSDVFNVKHLISY 1687
Y+KL +RK GP ++I+KI+ NAY ++LP ++ S +FNV L +
Sbjct: 585 PKGTYHKLKSRKFGPCKVIKKISSNAYLIELPPELQISPIFNVLDLYPF 633
Score = 130 bits (328), Expect(2) = 2e-70
Identities = 71/173 (41%), Positives = 95/173 (54%), Gaps = 6/173 (3%)
Frame = -1
Query: 2972 QFFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQ-- 2799
+F F +K+K V DALSRR + + V+G + + Y+ D YFS I+ LQ
Sbjct: 197 EFNFSLKYKSGQSNTVADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGS 256
Query: 2798 -ENGHTKFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFW 2631
+ G+ + LH+ YLFKG QLC+ + S QII ELHG H GRD+TL +V+ Y+W
Sbjct: 257 LQAGNLPYRLHEDYLFKGNQLCILEGSLREQIIGELHGNGLGGHFGRDKTLAMVADRYYW 316
Query: 2630 PSLRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
P + +V R V R KG A N GLY P P PW ++SMDF G K
Sbjct: 317 PKMHRDVERLVKRCSTCLFGKGSAQNTGLYVPLLEPDAPWIHLSMDFVLGLPK 369
Score = 73.9 bits (180), Expect = 4e-10
Identities = 41/86 (47%), Positives = 54/86 (62%)
Frame = -2
Query: 2575 YPKGKLPMQVFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCK 2396
+ KG V + P + + L+ F LGLP+ + D IFVVV QFSKMAHFIPC
Sbjct: 335 FGKGSAQNTGLYVPLLEPDAPWIHLSMDFVLGLPKIAKGFDSIFVVVYQFSKMAHFIPCF 394
Query: 2395 TTTDAVNVAVLFFHEVYRLHRLPSSM 2318
T+DA ++A LFF EV RLH +P+S+
Sbjct: 395 KTSDATHIAELFFCEVVRLHGIPTSI 420
>ref|XP_007220384.1| hypothetical protein PRUPE_ppa021778mg [Prunus persica]
gi|462416846|gb|EMJ21583.1| hypothetical protein
PRUPE_ppa021778mg [Prunus persica]
Length = 1384
Score = 154 bits (390), Expect(3) = 4e-69
Identities = 79/207 (38%), Positives = 121/207 (58%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFW +L +L T L+ SS HPQ +GQTEVTN +L +++RS+ G+ QWD L Q
Sbjct: 1141 KFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVCGEKPKQWDYALPQ 1200
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
AEF +N A +S+ PF +VY P +++DL P A++ E++ + +
Sbjct: 1201 AEFAYNSAVHSATGKSPFSIVYTATPNHVVDLVKLPRGQQTSVAAKNLAEEVVAVRDEVK 1260
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
L KYKA DR R F+ GD V L K+ A Y+KL +K GP++++++I
Sbjct: 1261 QKLEQTNAKYKAAADRHRRVKVFQEGDSVMIFLRKERFPAGTYSKLKPKKYGPYKVLKRI 1320
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISY 1687
N NAY ++LP ++ S++FNV L +
Sbjct: 1321 NDNAYVIELPDSMGISNIFNVADLYEF 1347
Score = 120 bits (301), Expect(3) = 4e-69
Identities = 65/171 (38%), Positives = 93/171 (54%), Gaps = 4/171 (2%)
Frame = -1
Query: 2972 QFFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQL-QE 2796
+F FVIKH RV DALSRR ++ + L V G + +ELY D F I + +
Sbjct: 939 KFSFVIKHTSGKTNRVADALSRRASMLITLTQEVVGFECLKELYEGDADFREIWTKCTNQ 998
Query: 2795 NGHTKFFLHDGYLFKGAQLCVPDCSFHLQIIQELHG---ERHVGRDRTLELVSRSYFWPS 2625
+FL++GYLFKG QLC+P S ++IQ+LHG H+GRD+T+ + ++WP
Sbjct: 999 EPMADYFLNEGYLFKGNQLCIPVSSLREKLIQDLHGGGLSGHLGRDKTIAGMEERFYWPQ 1058
Query: 2624 LRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
L+ +V V + Q SKG+ N LY P P W +++MDF K
Sbjct: 1059 LKRDVGTIVRKCYTCQTSKGQVQNTRLYMPLPVPNDIWQDLAMDFVLACKK 1109
Score = 37.7 bits (86), Expect(3) = 4e-69
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = -2
Query: 2419 MAHFIPCKTTTDAVNVAVLFFHEVYRLHRLPSSM 2318
M + CK DA N+A LFF EV RLH +P+S+
Sbjct: 1101 MDFVLACKKIADASNIAKLFFREVVRLHGVPTSI 1134
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 147 bits (370), Expect(3) = 2e-67
Identities = 82/207 (39%), Positives = 114/207 (55%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFWR+L KL+ T+L FS+++HPQ +GQTEVTN +L +LR V ++ WDLKL+Q
Sbjct: 1221 KFMSHFWRTLWKLLKTRLLFSTSHHPQTDGQTEVTNKTLGRILRCTVARSLKDWDLKLAQ 1280
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
AEF N A +++ PFEVVYG+ P DL P + A+ VEQ+ IH++
Sbjct: 1281 AEFAFNRAPSTTTGKSPFEVVYGVNPMMPTDLAPIKRNT-IDYDAKKRVEQMLHIHEQVK 1339
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+ + +K F+ GD V L K+ NKL R GPFE++EK
Sbjct: 1340 KQIEKANEAHKGKSKGVKGTKSFEPGDLVWIHLRKERFPEKRKNKLMPRADGPFEVLEKF 1399
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISY 1687
NAY++ LP FNV L Y
Sbjct: 1400 GSNAYKINLPGEYGVHGTFNVGDLSPY 1426
Score = 85.5 bits (210), Expect(3) = 2e-67
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFS---SILRQLQ 2799
F F K+ V DALSRR + ++ V G + +ELY +DP F +L+ Q
Sbjct: 993 FNFSSKYIEGKDNIVADALSRRFIMLSFMEQRVLGFEYMKELYVEDPDFKGEWELLQSGQ 1052
Query: 2798 ENGHTKFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGE---RHVGRDRTLELVSRSYFWP 2628
+K+ + +G+LF G +LCVP + +I+E+H H G +T +++ ++WP
Sbjct: 1053 IKLKSKYLVQNGFLFFGNKLCVPRGPYRNLLIREVHSNGLAGHFGIQKTYDILQEQFYWP 1112
Query: 2627 SLRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDF 2490
+ +V + R Q SK G Y P P PW +ISMDF
Sbjct: 1113 KMLGDVQDVIKRCAPCQQSK-SYFQTGPYTPLPVPNQPWEDISMDF 1157
Score = 75.1 bits (183), Expect(3) = 2e-67
Identities = 36/58 (62%), Positives = 43/58 (74%)
Frame = -2
Query: 2491 FFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAVNVAVLFFHEVYRLHRLPSSM 2318
F + LPRTQR D I VVVD+FSKMAHFI CK T DA +VA L+F EV +LH +P S+
Sbjct: 1157 FIVALPRTQRGKDSIMVVVDRFSKMAHFIACKKTEDATSVAELYFKEVVKLHGIPKSI 1214
>ref|XP_007226836.1| hypothetical protein PRUPE_ppa017565mg, partial [Prunus persica]
gi|462423772|gb|EMJ28035.1| hypothetical protein
PRUPE_ppa017565mg, partial [Prunus persica]
Length = 914
Score = 144 bits (364), Expect(3) = 2e-65
Identities = 73/201 (36%), Positives = 119/201 (59%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFW +L + T L+ SS HPQ NGQTEVTN +L +++RS+ + Q D LSQ
Sbjct: 712 KFLSHFWITLWGMFGTTLNSSSTTHPQTNGQTEVTNRTLGNMVRSICKEKPKQRDYALSQ 771
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
EF +N+A +S+ + PF +VY +VP +++DL P + +++ + +
Sbjct: 772 VEFAYNNAIHSATEKSPFSIVYTIVPNHVVDLVKLPRGQKTSVAEGNLAKEVVAVRDEVK 831
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
L KYKA D+ R F+ GD+V L + RA Y+KL +K GP++++++I
Sbjct: 832 QKLEQTNAKYKAAADKHRRVRVFQEGDFVMVFLRMERFRAGTYSKLKPKKYGPYKVLKRI 891
Query: 1767 NPNAYRLKLPSNIRTSDVFNV 1705
N NA+ ++LP+++ S+ FNV
Sbjct: 892 NDNAHVIELPNSVGISNTFNV 912
Score = 95.1 bits (235), Expect(3) = 2e-65
Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Frame = -1
Query: 2951 HKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENGH-TKFF 2775
H + RV DALSRR +L V L + G ++LY DD F I + + FF
Sbjct: 502 HTFGTSNRVADALSRRASLLVTLTQEIVGFKCLKDLYEDDDDFKEIWAKCANHEPMADFF 561
Query: 2774 LHDGYLFKGAQLCVPDCSFHLQIIQELHG---ERHVGRDRTLELVSRSYFWPSLRCEVVR 2604
L++GYLFK LC+P ++ ++LHG ++GR T+ + ++WP L+ V
Sbjct: 562 LNEGYLFKANLLCIPVSPLREKLSRDLHGGGLSGYLGRYTTIVGLEERFYWPQLKRYVGT 621
Query: 2603 FVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGF 2478
V + I QV KG+ N LY P P W +++MDF F
Sbjct: 622 IVRKCYICQVLKGQVQNTVLYMPLPVPNDIWQDLAMDFVLLF 663
Score = 61.2 bits (147), Expect(3) = 2e-65
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = -2
Query: 2449 IFVVVDQFSKMAHFIPCKTTTDAVNVAVLFFHEVYRLHRLPSSM 2318
+F+VVD+F KMAHFI CK T DA N+A LFF EV RLH +P+S+
Sbjct: 662 LFMVVDRFLKMAHFIVCKKTADASNIAKLFFKEVVRLHGVPTSI 705
>ref|XP_007010495.1| Uncharacterized protein TCM_044370 [Theobroma cacao]
gi|508727408|gb|EOY19305.1| Uncharacterized protein
TCM_044370 [Theobroma cacao]
Length = 1306
Score = 162 bits (411), Expect(2) = 2e-65
Identities = 86/229 (37%), Positives = 131/229 (57%)
Frame = -3
Query: 2373 LQFCSFMRSTGCIDYLLPCF*QRFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCS 2194
L FC +R G ++ +F+ HFWR+L + T+L +SS HPQ + QTEV N S
Sbjct: 1033 LFFCEVVRLHGIPTSIVSDRDVKFMGHFWRTLWRKFGTELKYSSTCHPQTDSQTEVVNRS 1092
Query: 2193 LSDLLRSLVGDNVWQWDLKLSQAEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPST 2014
L ++LR L+ +N WDL QAEF +N++ N S K PFE YGL P+++LDL P P
Sbjct: 1093 LGNILRCLIQNNPKTWDLVKPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQE 1152
Query: 2013 V*VHGKAEDFVEQLQQIHQKTHDHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNI 1834
V + E F + +Q+IH++ L +Y ++ R EF+ GD V L ++
Sbjct: 1153 ARVSNEGELFADHIQKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVYLRQERF 1212
Query: 1833 RAYEYNKLAARKVGPFEIIEKINPNAYRLKLPSNIRTSDVFNVKHLISY 1687
Y+KL +RK GP ++++KI+ NAY ++LP ++ S +FNV L +
Sbjct: 1213 PKGTYHKLKSRKFGPCKVLKKISSNAYLIELPPELQISHIFNVLDLYPF 1261
Score = 117 bits (292), Expect(2) = 2e-65
Identities = 62/152 (40%), Positives = 84/152 (55%), Gaps = 6/152 (3%)
Frame = -1
Query: 2909 RRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENGHTK---FFLHDGYLFKGAQL 2739
RR + + V+G + + Y+ D YFS I+ LQ + + + LH+ YLFKG QL
Sbjct: 846 RRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQARNLPYRLHEAYLFKGNQL 905
Query: 2738 CVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPSLRCEVVRFVDRYRIYQVSK 2568
C+P+ QII+ELHG H GRD+TL +V+ Y+WP +R +V R V R K
Sbjct: 906 CIPEGYLREQIIRELHGNGLGGHFGRDKTLAMVADRYYWPKMRRDVERLVKRCPTCLFGK 965
Query: 2567 GKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
G A N GLY P P PW ++SMDF G K
Sbjct: 966 GSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPK 997
Score = 79.7 bits (195), Expect = 7e-12
Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Frame = -2
Query: 2542 IVLPIP-PLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAVNVAV 2366
+ +P+P P + + L+ F LGLP+T + D IFVVVD+FSKMAHFIPC T+DA ++A
Sbjct: 973 LYVPLPEPDAPWIHLSMDFVLGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAE 1032
Query: 2365 LFFHEVYRLHRLPSSM 2318
LFF EV RLH +P+S+
Sbjct: 1033 LFFCEVVRLHGIPTSI 1048
>emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera]
Length = 1323
Score = 170 bits (431), Expect(2) = 1e-57
Identities = 83/207 (40%), Positives = 124/207 (59%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+S+FW++L + T+L FSS++HPQ +GQTEV N SL +LLR +V D + WD L Q
Sbjct: 1009 KFMSYFWKTLWVKLGTQLKFSSSFHPQTDGQTEVVNRSLGNLLRCIVRDQLRNWDNVLPQ 1068
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
AEF N + N + + PFEV YGL P+ +DL P P++V + F ++ IH+K
Sbjct: 1069 AEFAFNSSTNRTTGYLPFEVAYGLKPKQPVDLIPLPTSVRTSQDGDAFARHIRDIHEKVR 1128
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+ + + YK D R+++F+ G V L + Y KL A+K GPF +++++
Sbjct: 1129 EKIKISNENYKEAXDAHRRYIQFQEGGLVMVRLRPERFHPSTYQKLQAKKAGPFRVLKRL 1188
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISY 1687
NAY L+LPSN+ S +FNVK L Y
Sbjct: 1189 GENAYLLELPSNLXFSPIFNVKDLYIY 1215
Score = 82.8 bits (203), Expect(2) = 1e-57
Identities = 45/87 (51%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = -2
Query: 2575 YPKGKLPMQVFIVLPIP-PLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPC 2399
+P+ L + P+P P L+ F LGLPRTQR D IFVVVD+FSKM HFIPC
Sbjct: 916 WPRKGLKQNTGLYTPLPVPFKPWEDLSMDFVLGLPRTQRGFDSIFVVVDRFSKMTHFIPC 975
Query: 2398 KTTTDAVNVAVLFFHEVYRLHRLPSSM 2318
K T++A V LFF EV +LH LP S+
Sbjct: 976 KKTSNASYVTALFFKEVVQLHGLPQSI 1002
Score = 86.3 bits (212), Expect = 8e-14
Identities = 54/172 (31%), Positives = 74/172 (43%), Gaps = 6/172 (3%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F F +KH +V DALS++ L V + + G + + Y +D F + L
Sbjct: 798 FTFNLKHCAXIENKVXDALSKKXFLLVNMSTTTIGFEELKHCYDNDADFGDVYSSLLSGS 857
Query: 2789 HTK---FFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWP 2628
F + +GYLF LC+P S +I ELHG H RD+T+ LV +FWP
Sbjct: 858 KATCIDFQILEGYLFYKNHLCLPRTSLRDHVIWELHGGGMGGHFRRDKTIALVEDRFFWP 917
Query: 2627 SLRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
KG N GLY P P PW ++SMDF G +
Sbjct: 918 R------------------KGLKQNTGLYTPLPVPFKPWEDLSMDFVLGLPR 951
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 169 bits (428), Expect(2) = 4e-57
Identities = 87/208 (41%), Positives = 129/208 (62%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFWR L + TKL FS+ HPQ +GQTEV N SLS +LR+++ +N+ W+ L
Sbjct: 1394 KFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKNNIKLWEECLPH 1453
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
EF +N + +S+ K PFE+VYG +PR +DL P PS+ V+ A++ E + ++H+ T
Sbjct: 1454 IEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTK 1513
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+++ + +YK D+ +HV F GD V L KD +KL R GPF+++EKI
Sbjct: 1514 ENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKI 1573
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISYL 1684
N NAYRL+LP++ S FN+ L YL
Sbjct: 1574 NDNAYRLELPADFGVSPTFNIADLKPYL 1601
Score = 82.4 bits (202), Expect(2) = 4e-57
Identities = 41/80 (51%), Positives = 57/80 (71%)
Frame = -2
Query: 2557 PMQVFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAV 2378
P +++ LP+P + ++ F LGLPRT++ D IFVVVD+FSKMAHFIPC + DA
Sbjct: 1309 PHGLYMPLPVPSVPWE-DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAA 1367
Query: 2377 NVAVLFFHEVYRLHRLPSSM 2318
NVA LFF E+ RLH +P+++
Sbjct: 1368 NVADLFFREIIRLHGVPNTI 1387
Score = 118 bits (296), Expect = 1e-23
Identities = 62/171 (36%), Positives = 96/171 (56%), Gaps = 5/171 (2%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F +VIKHK + DALSRR+T+ QL + G++ ++ Y D F +L +E G
Sbjct: 1167 FPYVIKHKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCRE-G 1225
Query: 2789 HT--KFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPS 2625
T KF +++G++F+ +LC+P S L ++QE HG H G + ++++ +FWP
Sbjct: 1226 RTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPR 1285
Query: 2624 LRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
+R +V RFV R Q +K + GLY P P+ PW +ISMDF G +
Sbjct: 1286 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPR 1336
>ref|XP_007198961.1| hypothetical protein PRUPE_ppa020671mg, partial [Prunus persica]
gi|462394256|gb|EMJ00160.1| hypothetical protein
PRUPE_ppa020671mg, partial [Prunus persica]
Length = 1460
Score = 139 bits (350), Expect(3) = 5e-57
Identities = 77/204 (37%), Positives = 110/204 (53%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+S+FW++L KL +T L FSSA+HPQ +GQTEV N SL DLLR LVGD WDL L
Sbjct: 1185 KFVSYFWKTLWKLFSTSLKFSSAFHPQTDGQTEVVNRSLGDLLRCLVGDKQGNWDLILPV 1244
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
AEF +N++ N + PFE+VYG++PR +DL P P F E ++++H+
Sbjct: 1245 AEFAYNNSANRTIGKSPFEIVYGVMPRPPIDLAPLPIDARPSESTTTFAEHIRRLHE--- 1301
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+R +H + KL AR +GP+ I+ K+
Sbjct: 1302 --------------ERFPKH---------------------SFKKLHARSMGPYRILRKL 1326
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHL 1696
NAY ++LPS++ S +FNV L
Sbjct: 1327 GANAYLVELPSDVHISLIFNVSDL 1350
Score = 86.3 bits (212), Expect(3) = 5e-57
Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F FVI+H+ +V DALSR T +
Sbjct: 1017 FTFVIRHRPGVDNKVADALSREVTTG------------------------------NRHD 1046
Query: 2789 HTKFFLHDGYLFKGAQLCVPDCSFHLQIIQELHG---ERHVGRDRTLELVSRSYFWPSLR 2619
H F L DGYLF+G QLC+P S ++ ELH H G+D+T+ LV+ ++WPSL+
Sbjct: 1047 HVDFLLRDGYLFRGTQLCIPRTSLRDFLVWELHAGGLAGHFGKDKTITLVADRFYWPSLK 1106
Query: 2618 CEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNIS 2499
+V + + R Q++K + N GLY P P P++ I+
Sbjct: 1107 QDVAHILAQCRTCQLAKARKQNTGLYTPLPIPHTPFSKIA 1146
Score = 47.0 bits (110), Expect(3) = 5e-57
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = -2
Query: 2428 FSKMAHFIPCKTTTDAVNVAVLFFHEVYRLHRLPSSM 2318
FSK+AHF+PC DA VA LFF EV LH LP S+
Sbjct: 1142 FSKIAHFLPCSKAADASYVAKLFFKEVIHLHGLPVSI 1178
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 167 bits (422), Expect(2) = 2e-56
Identities = 87/208 (41%), Positives = 127/208 (61%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFWR L + TKL FS+ HPQ +GQTEV N SLS +LR+++ N+ W+ L
Sbjct: 1391 KFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKTNLKLWEECLPH 1450
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
EF +N + +S+ K PFE+VYG +PR +DL P PS+ V+ A++ E + ++H+ T
Sbjct: 1451 IEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAELILKMHELTK 1510
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+++ + +YK D+ +HV F GD V L KD +KL R GPF+++EKI
Sbjct: 1511 ENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKI 1570
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISYL 1684
N NAYRL+LP + S FN+ L YL
Sbjct: 1571 NDNAYRLELPXDFGVSPTFNIADLKPYL 1598
Score = 82.4 bits (202), Expect(2) = 2e-56
Identities = 41/80 (51%), Positives = 57/80 (71%)
Frame = -2
Query: 2557 PMQVFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAV 2378
P +++ LP+P + ++ F LGLPRT++ D IFVVVD+FSKMAHFIPC + DA
Sbjct: 1306 PHGLYMPLPVPSVPWE-DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAA 1364
Query: 2377 NVAVLFFHEVYRLHRLPSSM 2318
NVA LFF E+ RLH +P+++
Sbjct: 1365 NVADLFFREIIRLHGVPNTI 1384
Score = 115 bits (287), Expect = 2e-22
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 5/171 (2%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F +VIK K + DALSRR+T+ QL + G++ ++ Y D F +L +E G
Sbjct: 1164 FPYVIKDKKGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCRE-G 1222
Query: 2789 HT--KFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPS 2625
T KF +++G++F+ +LC+P S L ++QE HG H G + ++++ +FWP
Sbjct: 1223 RTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPR 1282
Query: 2624 LRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
+R +V RFV R Q +K + GLY P P+ PW +ISMDF G +
Sbjct: 1283 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPR 1333
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 165 bits (418), Expect(2) = 2e-56
Identities = 86/208 (41%), Positives = 127/208 (61%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFWR L + KL FS+ HPQ +GQTEV N +LS +LR+++ +N W+ L
Sbjct: 1379 KFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKNNKKMWEECLPH 1438
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
EF +N + +S+ K PFE+VYG +PR +DL P PS+ V+ A++ E + +IH+ T
Sbjct: 1439 IEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTK 1498
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+++ + KYK D+ +HV F GD V L KD +KL R GPF+++EKI
Sbjct: 1499 ENIERMNAKYKLARDKGRKHVVFAPGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEKI 1558
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISYL 1684
N NAY+L+LP++ S FN+ L YL
Sbjct: 1559 NDNAYKLELPADFGVSPTFNIADLKPYL 1586
Score = 84.0 bits (206), Expect(2) = 2e-56
Identities = 42/80 (52%), Positives = 58/80 (72%)
Frame = -2
Query: 2557 PMQVFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAV 2378
P +++ LP+P + ++ F LGLPRT++ D IFVVVD+FSKMAHFIPC + DAV
Sbjct: 1294 PHGLYMPLPVPSVPWE-DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAV 1352
Query: 2377 NVAVLFFHEVYRLHRLPSSM 2318
NVA LFF E+ RLH +P+++
Sbjct: 1353 NVADLFFREIIRLHGVPNTI 1372
Score = 124 bits (312), Expect = 2e-25
Identities = 65/171 (38%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F +VIKHK + DALSRR+T+ QL + G++ ++ Y D F +L+ +E G
Sbjct: 1152 FPYVIKHKKGKENVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDAEFKDVLQNCKE-G 1210
Query: 2789 HT--KFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPS 2625
T KF L+DG++F+ +LC+P S L ++QE HG H G +T ++++ +FWP
Sbjct: 1211 RTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGVKKTEDILATHFFWPK 1270
Query: 2624 LRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
+R +V RFV R Q +K + GLY P P+ PW +ISMDF G +
Sbjct: 1271 MRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPR 1321
>ref|XP_007207981.1| hypothetical protein PRUPE_ppa015715mg, partial [Prunus persica]
gi|462403623|gb|EMJ09180.1| hypothetical protein
PRUPE_ppa015715mg, partial [Prunus persica]
Length = 1445
Score = 170 bits (430), Expect(2) = 4e-56
Identities = 88/211 (41%), Positives = 121/211 (57%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+S+FW++L KL T L FSSA+HPQ +GQTEV N SL DLLR LVGD WDL L
Sbjct: 1128 KFVSYFWKTLWKLFGTTLKFSSAFHPQTDGQTEVVNRSLGDLLRCLVGDKPGNWDLLLPV 1187
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
AEF +N++ N S PFEVV+G PR +DL P A F E ++Q+H
Sbjct: 1188 AEFAYNNSVNRSTGKSPFEVVHGFSPRSPVDLVALPVAARTSDSATSFAEHIRQLHDDVR 1247
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+ T YK + R EF+ GD+V + + + + KL AR +GP+ II+K+
Sbjct: 1248 RQISMHTDTYKLAANAHRRQQEFREGDFVMVRVCPERFPKHSFKKLHARSMGPYRIIKKL 1307
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISYLRRF 1675
NAY ++LP+++ S +FNV L Y F
Sbjct: 1308 GSNAYLIELPADMHISPIFNVSDLSPYRGTF 1338
Score = 78.2 bits (191), Expect(2) = 4e-56
Identities = 43/77 (55%), Positives = 51/77 (66%)
Frame = -2
Query: 2548 VFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAVNVA 2369
++ LPIP L+ F LGLP+T R D IFV+VD+FSKMAHF+PC TDA VA
Sbjct: 1046 LYTPLPIPHTPWK-DLSMDFVLGLPKTSRGYDSIFVIVDRFSKMAHFLPCAKNTDASYVA 1104
Query: 2368 VLFFHEVYRLHRLPSSM 2318
LFF EV RLH LP S+
Sbjct: 1105 KLFFKEVVRLHGLPVSI 1121
Score = 122 bits (305), Expect = 1e-24
Identities = 62/172 (36%), Positives = 93/172 (54%), Gaps = 6/172 (3%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F FV++H+ +V DALSR T+ + V V+G D + Y+ P F I ++
Sbjct: 899 FTFVLRHRPGIDNKVADALSRVATILHTMTVQVTGFDRIKTEYSSCPDFGIIFHEVSNGN 958
Query: 2789 ---HTKFFLHDGYLFKGAQLCVPDCSFHLQIIQELHG---ERHVGRDRTLELVSRSYFWP 2628
+ F DG+LF+G QLC+P S ++ ELHG H G+D+T+ LV ++WP
Sbjct: 959 RREYVDFITRDGFLFRGTQLCIPRTSLREFLVWELHGGGLAGHFGKDKTIALVEDRFYWP 1018
Query: 2627 SLRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
SL+ +V + + R Q++K + N GLY P P PW ++SMDF G K
Sbjct: 1019 SLKRDVAHLISQCRTCQLAKARKRNTGLYTPLPIPHTPWKDLSMDFVLGLPK 1070
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 166 bits (419), Expect(2) = 2e-55
Identities = 84/208 (40%), Positives = 130/208 (62%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFWR+L + TKL FS+ HPQ +GQTEV N +LS +LR+++ N+ W+ L
Sbjct: 1363 KFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPH 1422
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
EF +N +++S+ K PFE+VYGL+PR +DL P P++ V+ A+ E + ++H+ T
Sbjct: 1423 VEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTK 1482
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+++ + KYK + +HV F+ GD V L KD +KL R GPF++++KI
Sbjct: 1483 ENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKI 1542
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISYL 1684
N NAY+L+LP++ S FN+ L YL
Sbjct: 1543 NDNAYKLELPADFGVSPTFNIADLKPYL 1570
Score = 80.5 bits (197), Expect(2) = 2e-55
Identities = 40/80 (50%), Positives = 57/80 (71%)
Frame = -2
Query: 2557 PMQVFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAV 2378
P +++ LP+P + ++ F LGLPRT++ D IFVVVD+FSKMAHFIPC + DA
Sbjct: 1278 PHGLYMPLPVPSVPWE-DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAT 1336
Query: 2377 NVAVLFFHEVYRLHRLPSSM 2318
+VA LFF E+ RLH +P+++
Sbjct: 1337 HVADLFFREIVRLHGVPNTI 1356
Score = 119 bits (298), Expect = 8e-24
Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 5/171 (2%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F +VIKHK + DALSRR+ + QL + G++ +E YA D F +L +E G
Sbjct: 1136 FPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKE-G 1194
Query: 2789 HT--KFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPS 2625
T KF L +G++F+ +LC+P S H+ ++QE HG H G + ++++ +FWP
Sbjct: 1195 RTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKMEDILADHFFWPK 1254
Query: 2624 LRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
R +V RFV R Q +K + GLY P P+ PW +ISMDF G +
Sbjct: 1255 KRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPR 1305
>emb|CAN79389.1| hypothetical protein VITISV_004909 [Vitis vinifera]
Length = 895
Score = 164 bits (416), Expect(2) = 2e-55
Identities = 82/206 (39%), Positives = 121/206 (58%)
Frame = -3
Query: 2304 FISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQA 2125
F+S+FW++L + +L FSS++HPQ +GQTEV N SL +LLR +V D + WD L QA
Sbjct: 583 FMSYFWKTLWAKLGAQLKFSSSFHPQTDGQTEVVNRSLGNLLRCIVRDQLRNWDNVLPQA 642
Query: 2124 EFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTHD 1945
EF N + N + PFEV YGL P+ +DL P ++V + F ++ IH+K +
Sbjct: 643 EFAFNSSTNRTIGHSPFEVAYGLKPKQPIDLIPLSTSVRTSQDGDAFARHIRDIHEKVRE 702
Query: 1944 HLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKIN 1765
+ + YK D R+++F+ GD V A L + Y KL A+K GPF +++ +
Sbjct: 703 KIKISNENYKEAADAHRRYIQFQEGDLVMARLRPERFHPSTYQKLQAKKAGPFRVLKWLG 762
Query: 1764 PNAYRLKLPSNIRTSDVFNVKHLISY 1687
NAY L+LPSN+ S +FNV+ L Y
Sbjct: 763 ENAYLLELPSNLHFSPIFNVEDLYIY 788
Score = 81.3 bits (199), Expect(2) = 2e-55
Identities = 45/77 (58%), Positives = 51/77 (66%)
Frame = -2
Query: 2548 VFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAVNVA 2369
++ LPIP L+ F LGLPR QR D IFVVVD+FSKM HFIPCK +DA VA
Sbjct: 500 LYTPLPIPSKPWE-DLSMDFVLGLPRAQRGFDSIFVVVDRFSKMTHFIPCKKASDASYVA 558
Query: 2368 VLFFHEVYRLHRLPSSM 2318
LFF EV RLH LP S+
Sbjct: 559 ALFFKEVVRLHGLPQSI 575
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 165 bits (417), Expect(2) = 3e-55
Identities = 83/208 (39%), Positives = 129/208 (62%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFWR+L + TKL FS+ HPQ +GQTEV N +LS +LR+++ N+ W+ L
Sbjct: 1363 KFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPH 1422
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
EF +N +++S+ K PFE+VYGL+PR +DL P P++ V+ A+ E + ++H+ T
Sbjct: 1423 VEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYHAELMLKLHETTK 1482
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+++ + KYK + +HV F+ GD V L KD +KL R GPF++++KI
Sbjct: 1483 ENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKI 1542
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISYL 1684
N N Y+L+LP++ S FN+ L YL
Sbjct: 1543 NDNTYKLELPADFGVSPTFNIADLKPYL 1570
Score = 80.5 bits (197), Expect(2) = 3e-55
Identities = 40/80 (50%), Positives = 57/80 (71%)
Frame = -2
Query: 2557 PMQVFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAV 2378
P +++ LP+P + ++ F LGLPRT++ D IFVVVD+FSKMAHFIPC + DA
Sbjct: 1278 PHGLYMPLPVPSVPWE-DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAT 1336
Query: 2377 NVAVLFFHEVYRLHRLPSSM 2318
+VA LFF E+ RLH +P+++
Sbjct: 1337 HVADLFFREIVRLHGVPNTI 1356
Score = 118 bits (296), Expect = 1e-23
Identities = 64/171 (37%), Positives = 96/171 (56%), Gaps = 5/171 (2%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F +VIKHK + DALSRR+ + QL + G++ +E YA D F +L +E G
Sbjct: 1136 FPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKE-G 1194
Query: 2789 HT--KFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPS 2625
T KF L +G++F+ +LC+P S + ++QE HG H G +T ++++ +FWP
Sbjct: 1195 RTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254
Query: 2624 LRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
+R +V RFV R Q +K + GLY P P+ PW +ISMDF G +
Sbjct: 1255 MRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPR 1305
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 164 bits (415), Expect(2) = 5e-55
Identities = 83/208 (39%), Positives = 129/208 (62%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFWR+L + TKL FS+ HPQ +GQTEV N ++S +LR+++ N+ W+ L
Sbjct: 1259 KFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTVSTMLRAVLKKNIKMWEECLPH 1318
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
EF +N +++S+ K PFE+VYGL+PR +DL P P+ V+ A+ E + ++H+ T
Sbjct: 1319 VEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTLERVNFDAKYRAELMLKLHETTK 1378
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+++ + KYK + +HV F+ GD V L KD +KL R GPF++++KI
Sbjct: 1379 ENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLPPRADGPFQVLQKI 1438
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISYL 1684
N NAY+L+LP++ S FN+ L YL
Sbjct: 1439 NDNAYKLELPADFGVSPTFNIADLKPYL 1466
Score = 80.5 bits (197), Expect(2) = 5e-55
Identities = 40/80 (50%), Positives = 57/80 (71%)
Frame = -2
Query: 2557 PMQVFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAV 2378
P +++ LP+P + ++ F LGLPRT++ D IFVVVD+FSKMAHFIPC + DA
Sbjct: 1174 PHGLYMPLPVPSVPWE-DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAT 1232
Query: 2377 NVAVLFFHEVYRLHRLPSSM 2318
+VA LFF E+ RLH +P+++
Sbjct: 1233 HVADLFFREIVRLHGVPNTI 1252
Score = 123 bits (308), Expect = 6e-25
Identities = 66/171 (38%), Positives = 97/171 (56%), Gaps = 5/171 (2%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F +VIKHK +VDALSRR+ + QL + G++ +E YA D F +L +E G
Sbjct: 1032 FPYVIKHKKGKENVIVDALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKE-G 1090
Query: 2789 HT--KFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPS 2625
T KF L +G++F+ +LC+P S H+ ++QE HG H G +T ++++ FWP
Sbjct: 1091 RTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGLMGHFGVKKTEDILADHLFWPK 1150
Query: 2624 LRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
+R +V RFV R Q +K + GLY P P+ PW +ISMDF G +
Sbjct: 1151 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPR 1201
>ref|XP_007019474.1| Uncharacterized protein TCM_035549 [Theobroma cacao]
gi|508724802|gb|EOY16699.1| Uncharacterized protein
TCM_035549 [Theobroma cacao]
Length = 1392
Score = 161 bits (408), Expect(2) = 5e-55
Identities = 81/207 (39%), Positives = 125/207 (60%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+ HFWR+L + T+L +SS HPQ +GQTEV N SL ++LR L+ +N WDL + Q
Sbjct: 1099 KFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVIPQ 1158
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
AEF +N++ N S K PFE YGL P+++LDL P P V + E F + +++IH++
Sbjct: 1159 AEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEPRVSNEGELFADHIRKIHEEVK 1218
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
L +Y ++ R EF+ GD V L ++ Y+KL +RK GP ++++KI
Sbjct: 1219 TALKASNAQYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVLKKI 1278
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISY 1687
+ NAY ++LP ++ S +FNV L +
Sbjct: 1279 SSNAYLIELPPELQISPIFNVLDLYPF 1305
Score = 83.2 bits (204), Expect(2) = 5e-55
Identities = 41/76 (53%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Frame = -2
Query: 2542 IVLPIP-PLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAVNVAV 2366
+ +P+P P + + L+ F LGLP+T + D IFVVVD+FSKMAHFIPC T+DA ++A
Sbjct: 1017 LYVPLPEPDAPWIHLSMDFVLGLPKTAKRFDSIFVVVDRFSKMAHFIPCFRTSDATHIAE 1076
Query: 2365 LFFHEVYRLHRLPSSM 2318
LFF E+ RLHR+P+S+
Sbjct: 1077 LFFREIVRLHRIPTSI 1092
Score = 127 bits (319), Expect = 3e-26
Identities = 68/158 (43%), Positives = 90/158 (56%), Gaps = 6/158 (3%)
Frame = -1
Query: 2927 VVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQ---ENGHTKFFLHDGYL 2757
V DALSRR + + V+G + + Y+ D YFS I+ LQ + + + LH+ YL
Sbjct: 884 VADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYL 943
Query: 2756 FKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPSLRCEVVRFVDRYR 2586
FKG QLC+P+ S QII+ELHG H GRD+TL +V+ Y+WP +R +V R V R
Sbjct: 944 FKGNQLCIPEGSLREQIIRELHGNGLGGHFGRDKTLAMVADRYYWPKMRQDVERLVKRCP 1003
Query: 2585 IYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
KG A N GLY P P PW ++SMDF G K
Sbjct: 1004 TCLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPK 1041
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 164 bits (414), Expect(2) = 6e-55
Identities = 83/208 (39%), Positives = 129/208 (62%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFWR+L + TK FS+ HPQ +GQTEV N +LS +LR+++ N+ W+ L
Sbjct: 1363 KFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPH 1422
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
EF +N +++S+ K PFE+VYGL+PR +DL P P++ V+ A+ E + ++H+ T
Sbjct: 1423 VEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHPTSERVNFDAKYRAELMLKLHETTK 1482
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+++ + KYK + +HV F+ GD V L KD +KL R GPF++++KI
Sbjct: 1483 ENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKI 1542
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISYL 1684
N NAY+L+LP++ S FN+ L YL
Sbjct: 1543 NDNAYKLELPADFGVSPTFNIADLKPYL 1570
Score = 80.5 bits (197), Expect(2) = 6e-55
Identities = 40/80 (50%), Positives = 57/80 (71%)
Frame = -2
Query: 2557 PMQVFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAV 2378
P +++ LP+P + ++ F LGLPRT++ D IFVVVD+FSKMAHFIPC + DA
Sbjct: 1278 PHGLYMPLPVPSVPWE-DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAT 1336
Query: 2377 NVAVLFFHEVYRLHRLPSSM 2318
+VA LFF E+ RLH +P+++
Sbjct: 1337 HVADLFFREIVRLHGVPNTI 1356
Score = 120 bits (301), Expect = 4e-24
Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 5/171 (2%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F +VIKHK + DALSRR+ + QL + G++ +E YA D F ++L +E G
Sbjct: 1136 FPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKE-G 1194
Query: 2789 HT--KFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPS 2625
T KF L +G++F+ +LC+P S + ++QE HG H G +T ++++ +FWP
Sbjct: 1195 RTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGLMGHFGVKKTEDILADHFFWPK 1254
Query: 2624 LRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
+R +V RFV R Q +K + GLY P P+ PW +ISMDF G +
Sbjct: 1255 MRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPR 1305
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 162 bits (410), Expect(2) = 1e-54
Identities = 82/208 (39%), Positives = 127/208 (61%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFWR+L + TKL FS+ HPQ +GQTEV N +LS +LR+++ N+ W+ L
Sbjct: 1338 KFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPH 1397
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
EF +N + +S+ K PF++VYGL+PR +DL P PS+ ++ A E + ++H+ T
Sbjct: 1398 IEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTK 1457
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+++ + +YK D+ + + F+ GD V L K+ +KL R GPF+++EKI
Sbjct: 1458 ENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKI 1517
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISYL 1684
N NAYRL LP++ S FN+ L YL
Sbjct: 1518 NDNAYRLDLPADFGVSPTFNIADLKPYL 1545
Score = 80.9 bits (198), Expect(2) = 1e-54
Identities = 39/80 (48%), Positives = 56/80 (70%)
Frame = -2
Query: 2557 PMQVFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAV 2378
P +++ LP+P ++ F LGLPRT++ D +FVVVD+FSKMAHFIPC T DA
Sbjct: 1253 PHGLYLPLPVPSAPWE-DISMDFVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDAT 1311
Query: 2377 NVAVLFFHEVYRLHRLPSSM 2318
++A LFF E+ RLH +P+++
Sbjct: 1312 HIADLFFREIVRLHGVPNTI 1331
Score = 122 bits (306), Expect = 1e-24
Identities = 62/170 (36%), Positives = 95/170 (55%), Gaps = 4/170 (2%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQEN- 2793
F +VIKHK + DALSRR+TL QL + G++ ++ Y D F +L ++
Sbjct: 1111 FPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQYVHDADFKDVLLHCKDGK 1170
Query: 2792 GHTKFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPSL 2622
G K+ + DG++F+ +LC+P S L ++QE HG H G +T ++++ +FWP +
Sbjct: 1171 GWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTEDILAGHFFWPKM 1230
Query: 2621 RCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
R +VVR V R Q +K + GLY P P+ PW +ISMDF G +
Sbjct: 1231 RRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPR 1280
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 160 bits (406), Expect(2) = 2e-54
Identities = 82/208 (39%), Positives = 127/208 (61%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F+SHFWR+L + TKL FS+ HPQ +GQTEV N +LS +LR+++ N+ W+ L
Sbjct: 1335 KFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPH 1394
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
EF +N + +S+ K PF++VYGL+PR +DL P PS+ ++ A+ E + ++H+ T
Sbjct: 1395 IEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTK 1454
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILTKDNIRAYEYNKLAARKVGPFEIIEKI 1768
+++ + KYK D+ R + F+ GD V L K+ +KL R GPF+++ KI
Sbjct: 1455 ENIERMNAKYKFAGDKGRRELTFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKI 1514
Query: 1767 NPNAYRLKLPSNIRTSDVFNVKHLISYL 1684
N NAY++ LP++ S FNV L YL
Sbjct: 1515 NENAYKIDLPADFGVSPTFNVADLKPYL 1542
Score = 82.0 bits (201), Expect(2) = 2e-54
Identities = 41/80 (51%), Positives = 57/80 (71%)
Frame = -2
Query: 2557 PMQVFIVLPIPPLSLGLTLAWIFFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAV 2378
P +++ LP+P + ++ F LGLPRT+R D IFVVVD+FSKMAHFIPC T DA
Sbjct: 1250 PHGLYMPLPVPTVPWE-DISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDAS 1308
Query: 2377 NVAVLFFHEVYRLHRLPSSM 2318
++A LFF E+ RLH +P+++
Sbjct: 1309 HIADLFFREIVRLHGVPNTI 1328
Score = 112 bits (281), Expect(3) = 4e-42
Identities = 77/212 (36%), Positives = 115/212 (54%), Gaps = 3/212 (1%)
Frame = -3
Query: 2307 RFISHFWRSLRKLVNTKLDFSSAYHPQPNGQTEVTNCSLSDLLRSLVGDNVWQWDLKLSQ 2128
+F SHFW+ L++ + T+L+FS+AYHPQ +GQTE N L D+L + V D WD L
Sbjct: 2157 QFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPY 2216
Query: 2127 AEFVHNHARNSSAKFYPFEVVYGLVPRYLLDLTPFPSTV*VHGKAEDFVEQLQQIHQKTH 1948
AEF +N++ +S + P+E +YG R L L V G D + + + +
Sbjct: 2217 AEFSYNNSYQASIQMAPYEALYGRKCRTPL-LWDQVGESQVFG--TDILREAEAKVRTIW 2273
Query: 1947 DHLVDVTQKYKAVVDRKSRHVEFKVGDYV*AILT--KDNIRAYEYNKLAARKVGPFEIIE 1774
D+L + K+ D + R++EF V D+V +T + R KLA R VGPF II
Sbjct: 2274 DNLKVAQSRQKSYADNRRRNLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRFVGPFRIIA 2333
Query: 1773 KINPNAYRLKLPSNI-RTSDVFNVKHLISYLR 1681
+ AY+L+LP+++ DVF+V L LR
Sbjct: 2334 RRGEVAYQLELPASLGNVHDVFHVSQLKKCLR 2365
Score = 56.6 bits (135), Expect(3) = 4e-42
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Frame = -1
Query: 2885 LQVSVSGIDVFRELYADDPYFSSILRQLQENGHTKFFLHD--GYLFKGAQLCVPDCSFHL 2712
L+ + +D RE +DP +L+ +++ G F+ D G L+ ++CVPD
Sbjct: 1956 LEAKPTLLDQIREAQKNDPDMRGLLKNMKQ-GKAAGFIEDEHGTLWNRNRVCVPDVRELK 2014
Query: 2711 QII-QELHGER---HVGRDRTLELVSRSYFWPSLRCEVVRFVDRYRIYQVSKGKATN-AG 2547
Q+I QE H H G + + Y+W S++ E+ FV + Q K + AG
Sbjct: 2015 QLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAG 2074
Query: 2546 LYRPSHTPT*PWTNISMDFFFGFAK 2472
L +P P W I MDF G K
Sbjct: 2075 LLQPLQVPEWKWDEIGMDFITGLPK 2099
Score = 52.8 bits (125), Expect(3) = 4e-42
Identities = 26/58 (44%), Positives = 36/58 (62%)
Frame = -2
Query: 2491 FFLGLPRTQRCSDFIFVVVDQFSKMAHFIPCKTTTDAVNVAVLFFHEVYRLHRLPSSM 2318
F GLP+TQ D I+VVVD+ +K+A FIP KTT +A L+F + LH +P +
Sbjct: 2093 FITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKI 2150
Score = 126 bits (316), Expect = 7e-26
Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 5/171 (2%)
Frame = -1
Query: 2969 FFFVIKHKVSSRTRVVDALSRRHTLFVQLQVSVSGIDVFRELYADDPYFSSILRQLQENG 2790
F +VIKHK + DALSRR+TL QL + G++ ++ YA D F+ +L ++ G
Sbjct: 1108 FPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHCKD-G 1166
Query: 2789 HT--KFFLHDGYLFKGAQLCVPDCSFHLQIIQELHGER---HVGRDRTLELVSRSYFWPS 2625
T KF ++DG++F+ +LC+P S L ++QE HG H G +T ++++ +FWP
Sbjct: 1167 RTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFFWPQ 1226
Query: 2624 LRCEVVRFVDRYRIYQVSKGKATNAGLYRPSHTPT*PWTNISMDFFFGFAK 2472
+R +V RFV R Q +K + GLY P PT PW +ISMDF G +
Sbjct: 1227 MRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPR 1277