BLASTX nr result
ID: Cocculus23_contig00012546
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00012546
(810 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006400330.1| hypothetical protein EUTSA_v10015071mg [Eutr... 77 8e-12
ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arab... 77 1e-11
ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabi... 76 2e-11
ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloropl... 76 2e-11
ref|XP_006433698.1| hypothetical protein CICLE_v10002778mg [Citr... 73 1e-10
ref|XP_006288938.1| hypothetical protein CARUB_v10002303mg [Caps... 71 5e-10
ref|XP_002510018.1| 50S ribosomal protein CL25, chloroplast prec... 70 7e-10
ref|XP_006472361.1| PREDICTED: 50S ribosomal protein 6, chloropl... 70 9e-10
sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, c... 69 2e-09
ref|XP_002302374.1| plastid-specific ribosomal family protein [P... 69 2e-09
ref|XP_004979460.1| PREDICTED: 50S ribosomal protein 6, chloropl... 68 3e-09
ref|XP_007137271.1| hypothetical protein PHAVU_009G113500g [Phas... 68 5e-09
ref|XP_004301446.1| PREDICTED: 50S ribosomal protein 6, chloropl... 68 5e-09
ref|XP_006852759.1| hypothetical protein AMTR_s00033p00126850 [A... 67 6e-09
ref|XP_007226349.1| hypothetical protein PRUPE_ppa022547mg [Prun... 67 1e-08
ref|XP_007199117.1| hypothetical protein PRUPE_ppa020853mg [Prun... 66 2e-08
gb|EXC01136.1| 50S ribosomal protein 6 [Morus notabilis] 65 3e-08
ref|XP_004238050.1| PREDICTED: 50S ribosomal protein 6, chloropl... 65 3e-08
ref|XP_002456091.1| hypothetical protein SORBIDRAFT_03g030290 [S... 65 4e-08
ref|NP_001150884.1| plastid-specific ribosomal protein 6 [Zea ma... 65 4e-08
>ref|XP_006400330.1| hypothetical protein EUTSA_v10015071mg [Eutrema salsugineum]
gi|557101420|gb|ESQ41783.1| hypothetical protein
EUTSA_v10015071mg [Eutrema salsugineum]
Length = 109
Score = 77.0 bits (188), Expect = 8e-12
Identities = 42/68 (61%), Positives = 48/68 (70%), Gaps = 4/68 (5%)
Frame = -1
Query: 549 MSVSAIIGTS-VALKAKPSLGGEKMTTVRRVGG---VIECSSRPQKKATAHHMKTRPKKT 382
MSVSAI GT V + A PSL ++ GG VIECSSRPQKK+TAHH KTRPKKT
Sbjct: 1 MSVSAIFGTGIVTVAASPSLRQFQVPKSGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60
Query: 381 APWDVKRR 358
PWD+KR+
Sbjct: 61 QPWDIKRK 68
>ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arabidopsis lyrata subsp.
lyrata] gi|297317621|gb|EFH48043.1| hypothetical protein
ARALYDRAFT_488653 [Arabidopsis lyrata subsp. lyrata]
Length = 108
Score = 76.6 bits (187), Expect = 1e-11
Identities = 41/68 (60%), Positives = 49/68 (72%), Gaps = 4/68 (5%)
Frame = -1
Query: 549 MSVSAIIGTS-VALKAKPSLGGEKMTTVRRVGG---VIECSSRPQKKATAHHMKTRPKKT 382
MSVSAI GT V + A P L ++ T+ GG VIECSSRPQKK+TAHH K+RPKKT
Sbjct: 1 MSVSAIFGTGIVTVAASPVLRQFQVPTLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKKT 60
Query: 381 APWDVKRR 358
PWD+KR+
Sbjct: 61 QPWDIKRK 68
>ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana]
gi|75171293|sp|Q9FKP0.1|PSRP6_ARATH RecName: Full=50S
ribosomal protein 6, chloroplastic; AltName: Full=CL25;
AltName: Full=Plastid-specific 50S ribosomal protein 6;
Short=PSRP-6; Flags: Precursor
gi|10177888|dbj|BAB11220.1| unnamed protein product
[Arabidopsis thaliana] gi|14517428|gb|AAK62604.1|
AT5g17870/MPI7_10 [Arabidopsis thaliana]
gi|20147339|gb|AAM10383.1| AT5g17870/MPI7_10
[Arabidopsis thaliana] gi|21554906|gb|AAM63726.1|
plastid-specific ribosomal protein 6 precursor
(Psrp-6)-like [Arabidopsis thaliana]
gi|332005097|gb|AED92480.1| plastid-specific 50S
ribosomal protein 6 [Arabidopsis thaliana]
Length = 106
Score = 75.9 bits (185), Expect = 2e-11
Identities = 41/68 (60%), Positives = 48/68 (70%), Gaps = 4/68 (5%)
Frame = -1
Query: 549 MSVSAIIGTS-VALKAKPSLGGEKMTTVRRVGG---VIECSSRPQKKATAHHMKTRPKKT 382
MSVSAI GT V + A P L ++ + GG VIECSSRPQKK+TAHH KTRPKKT
Sbjct: 1 MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60
Query: 381 APWDVKRR 358
PWD+KR+
Sbjct: 61 QPWDIKRK 68
>ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloroplastic [Vitis vinifera]
Length = 108
Score = 75.9 bits (185), Expect = 2e-11
Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Frame = -1
Query: 549 MSVSAIIGTSVALKAKPSLGGEKMTTVRRVGG---VIECSSRPQKKATAHHMKTRPKKTA 379
MS+SAI G +V + + R+GG VIECSSRPQKK T+HHMKTRP+KT
Sbjct: 1 MSISAIFGAAVPNRCSTAASFGARKAAPRLGGGAAVIECSSRPQKKGTSHHMKTRPRKTQ 60
Query: 378 PWDVKRR 358
PWD+KRR
Sbjct: 61 PWDIKRR 67
>ref|XP_006433698.1| hypothetical protein CICLE_v10002778mg [Citrus clementina]
gi|557535820|gb|ESR46938.1| hypothetical protein
CICLE_v10002778mg [Citrus clementina]
Length = 149
Score = 72.8 bits (177), Expect = 1e-10
Identities = 39/75 (52%), Positives = 53/75 (70%), Gaps = 3/75 (4%)
Frame = -1
Query: 573 NEREGKRK-MSVSAIIGTSVALKAKPSLGGEKMTTVRR--VGGVIECSSRPQKKATAHHM 403
++ EG R+ MS+S+ G+ + + P+L +K+ + VG VIE SSRPQKKATAHHM
Sbjct: 30 DQSEGNRRGMSISSFFGSQIVVV--PNLSSKKLGVEGKCNVGLVIENSSRPQKKATAHHM 87
Query: 402 KTRPKKTAPWDVKRR 358
KTRP+KT PWDV R+
Sbjct: 88 KTRPRKTQPWDVNRK 102
>ref|XP_006288938.1| hypothetical protein CARUB_v10002303mg [Capsella rubella]
gi|482557644|gb|EOA21836.1| hypothetical protein
CARUB_v10002303mg [Capsella rubella]
Length = 109
Score = 70.9 bits (172), Expect = 5e-10
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Frame = -1
Query: 549 MSVSAIIGTSVALKA--KPSLGGEKMTTVRRVGG---VIECSSRPQKKATAHHMKTRPKK 385
MSVSAI GT + A P L ++ + GG VIECSSRPQKK+TAHH K+RPKK
Sbjct: 1 MSVSAIFGTGIVTVAASSPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKK 60
Query: 384 TAPWDVKRR 358
+ PWD+KR+
Sbjct: 61 SQPWDIKRK 69
>ref|XP_002510018.1| 50S ribosomal protein CL25, chloroplast precursor, putative
[Ricinus communis] gi|223550719|gb|EEF52205.1| 50S
ribosomal protein CL25, chloroplast precursor, putative
[Ricinus communis]
Length = 126
Score = 70.5 bits (171), Expect = 7e-10
Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 11/75 (14%)
Frame = -1
Query: 549 MSVSAIIGTSVALKAKPSL--------GGEKMTTVR---RVGGVIECSSRPQKKATAHHM 403
MS+S+I G+ V L +K SL K T G VIECSSRP+KKATAHHM
Sbjct: 1 MSISSIFGSPVVLLSKASLKQLNVEVKSAPKTATGNGWYSGGLVIECSSRPKKKATAHHM 60
Query: 402 KTRPKKTAPWDVKRR 358
KTRPKK+ PWD++R+
Sbjct: 61 KTRPKKSQPWDIRRK 75
>ref|XP_006472361.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Citrus
sinensis]
Length = 111
Score = 70.1 bits (170), Expect = 9e-10
Identities = 36/66 (54%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Frame = -1
Query: 549 MSVSAIIGTSVALKAKPSLGGEKMTTVRR--VGGVIECSSRPQKKATAHHMKTRPKKTAP 376
MS+S+ G+ + + P+L +K+ + VG VIE SSRPQKKATAHHMKTRP+KT P
Sbjct: 1 MSISSFFGSQIVVV--PNLSSKKLGMEEKCNVGLVIENSSRPQKKATAHHMKTRPRKTQP 58
Query: 375 WDVKRR 358
WDV R+
Sbjct: 59 WDVNRK 64
>sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, chloroplastic; AltName:
Full=CL25; AltName: Full=Plastid-specific 50S ribosomal
protein 6; Short=PSRP-6; Flags: Precursor
gi|7578927|gb|AAF64189.1|AF245292_1 plastid-specific
ribosomal protein 6 precursor [Spinacia oleracea]
Length = 116
Score = 69.3 bits (168), Expect = 2e-09
Identities = 43/80 (53%), Positives = 46/80 (57%), Gaps = 17/80 (21%)
Frame = -1
Query: 549 MSVSAIIGTSVA---------------LKAKPSLGGEKMTTVRRVGGVI--ECSSRPQKK 421
MSVSAI G V +K +PS GG GGVI ECSSRPQKK
Sbjct: 1 MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCG------GGVITIECSSRPQKK 54
Query: 420 ATAHHMKTRPKKTAPWDVKR 361
TAHHMKTRPKKTA WD+KR
Sbjct: 55 GTAHHMKTRPKKTARWDIKR 74
>ref|XP_002302374.1| plastid-specific ribosomal family protein [Populus trichocarpa]
gi|118486925|gb|ABK95296.1| unknown [Populus
trichocarpa] gi|222844100|gb|EEE81647.1|
plastid-specific ribosomal family protein [Populus
trichocarpa]
Length = 123
Score = 69.3 bits (168), Expect = 2e-09
Identities = 41/76 (53%), Positives = 49/76 (64%), Gaps = 12/76 (15%)
Frame = -1
Query: 549 MSVSAIIGTSVALKAKPS-------LGGEKMT----TVRRVGGV-IECSSRPQKKATAHH 406
MSVS+I G+ L KPS + GE T T GG+ IECSSRPQKKATAHH
Sbjct: 1 MSVSSIFGSPFLLAPKPSTTPSFKPVNGEFKTVPIGTGFGHGGMSIECSSRPQKKATAHH 60
Query: 405 MKTRPKKTAPWDVKRR 358
KTRP+K+ PWD+KR+
Sbjct: 61 RKTRPRKSQPWDIKRK 76
>ref|XP_004979460.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Setaria
italica]
Length = 117
Score = 68.2 bits (165), Expect = 3e-09
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = -1
Query: 516 ALKAKPSLGGEKMTTVRRVGGVIECSSRPQKKATAHHMKTRPKKTAPWDVKRR 358
A ++P++G + R +ECSSRPQKK T HHMKTRPKKT PWD+KRR
Sbjct: 20 ARPSRPTVGFPSLLGGGRAALAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 72
>ref|XP_007137271.1| hypothetical protein PHAVU_009G113500g [Phaseolus vulgaris]
gi|561010358|gb|ESW09265.1| hypothetical protein
PHAVU_009G113500g [Phaseolus vulgaris]
Length = 96
Score = 67.8 bits (164), Expect = 5e-09
Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = -1
Query: 546 SVSAIIGTSVALKAKPSLGGEKMTTVRRVGGV-IECSSRPQKKATAHHMKTRPKKTAPWD 370
S+S++ G + SLG K R GG+ I CSSRP+KKATAHHMKTRP+K+ PWD
Sbjct: 3 SLSSMFGCGAVMAPPQSLGIGK----RSDGGLTIVCSSRPKKKATAHHMKTRPRKSQPWD 58
Query: 369 VKRRXXXXXXXXXXXXXXXXXXPSDTTASVVAQSPP 262
+ R+ P+D +++ VA PP
Sbjct: 59 INRKPTVYDPMPPLPPDWTLIIPADASSAAVAPPPP 94
>ref|XP_004301446.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Fragaria
vesca subsp. vesca]
Length = 114
Score = 67.8 bits (164), Expect = 5e-09
Identities = 40/85 (47%), Positives = 45/85 (52%)
Frame = -1
Query: 507 AKPSLGGEKMTTVRRVGGVIECSSRPQKKATAHHMKTRPKKTAPWDVKRRXXXXXXXXXX 328
A P GG G VIECSSRPQKKATAHH KTRP+KTA WDVKR+
Sbjct: 34 APPLCGGS-------TGLVIECSSRPQKKATAHHRKTRPRKTAAWDVKRKPTVYAPLPPL 86
Query: 327 XXXXXXXXPSDTTASVVAQSPPEDK 253
SD AS SPP+++
Sbjct: 87 PADWVFLNSSD-DASAADPSPPQEQ 110
>ref|XP_006852759.1| hypothetical protein AMTR_s00033p00126850 [Amborella trichopoda]
gi|548856373|gb|ERN14226.1| hypothetical protein
AMTR_s00033p00126850 [Amborella trichopoda]
Length = 97
Score = 67.4 bits (163), Expect = 6e-09
Identities = 32/63 (50%), Positives = 43/63 (68%)
Frame = -1
Query: 549 MSVSAIIGTSVALKAKPSLGGEKMTTVRRVGGVIECSSRPQKKATAHHMKTRPKKTAPWD 370
M S ++ S + PS G +K +R+V ++ECSSRPQKKAT+HHMKTRP+K WD
Sbjct: 1 MGSSCVMLPSSLSRICPSFGLKKQVELRKVS-IVECSSRPQKKATSHHMKTRPRKRQAWD 59
Query: 369 VKR 361
+KR
Sbjct: 60 IKR 62
>ref|XP_007226349.1| hypothetical protein PRUPE_ppa022547mg [Prunus persica]
gi|462423285|gb|EMJ27548.1| hypothetical protein
PRUPE_ppa022547mg [Prunus persica]
Length = 67
Score = 66.6 bits (161), Expect = 1e-08
Identities = 32/64 (50%), Positives = 37/64 (57%)
Frame = -1
Query: 453 VIECSSRPQKKATAHHMKTRPKKTAPWDVKRRXXXXXXXXXXXXXXXXXXPSDTTASVVA 274
+IECSSRPQKKATAHH KTRP+KT PWDVKR+ +D +S
Sbjct: 1 MIECSSRPQKKATAHHRKTRPRKTQPWDVKRKPTVYTPLPPLPADWTLVSSADEASSSSP 60
Query: 273 QSPP 262
Q PP
Sbjct: 61 QEPP 64
>ref|XP_007199117.1| hypothetical protein PRUPE_ppa020853mg [Prunus persica]
gi|462394517|gb|EMJ00316.1| hypothetical protein
PRUPE_ppa020853mg [Prunus persica]
Length = 74
Score = 65.9 bits (159), Expect = 2e-08
Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 5/52 (9%)
Frame = -1
Query: 498 SLGGEKMTTVR-RVGG----VIECSSRPQKKATAHHMKTRPKKTAPWDVKRR 358
S G K + +R VGG +IECSSRPQKKATAHH KTRP+KT PWDVKR+
Sbjct: 13 SFGVPKTSPLRGSVGGGTGLMIECSSRPQKKATAHHRKTRPRKTQPWDVKRK 64
>gb|EXC01136.1| 50S ribosomal protein 6 [Morus notabilis]
Length = 115
Score = 65.1 bits (157), Expect = 3e-08
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Frame = -1
Query: 549 MSVSAIIGTSVALKAKPSL-----GGEKMTTVRRVGG----VIECSSRPQKKATAHHMKT 397
MS +A G + PS G K GG VIECSSRP KKATAHHMKT
Sbjct: 1 MSTAAFFGAQIVAVRIPSAPASFAGARKSAPWNGGGGGGPAVIECSSRPTKKATAHHMKT 60
Query: 396 RPKKTAPWDVKRR 358
RPKKT WD++R+
Sbjct: 61 RPKKTQAWDIRRK 73
>ref|XP_004238050.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Solanum
lycopersicum]
Length = 111
Score = 65.1 bits (157), Expect = 3e-08
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 10/73 (13%)
Frame = -1
Query: 549 MSVSAIIGTSVALKAKPSL--------GGEKMTTV-RRVGG-VIECSSRPQKKATAHHMK 400
MS SAI G +A+ + S G ++ + +GG VIECSSRPQKKATAHH K
Sbjct: 1 MSASAIFGLQMAVLPRSSTVSATGFTGGATRLASAPTSIGGLVIECSSRPQKKATAHHKK 60
Query: 399 TRPKKTAPWDVKR 361
TRP+KT WD++R
Sbjct: 61 TRPRKTQAWDIRR 73
>ref|XP_002456091.1| hypothetical protein SORBIDRAFT_03g030290 [Sorghum bicolor]
gi|241928066|gb|EES01211.1| hypothetical protein
SORBIDRAFT_03g030290 [Sorghum bicolor]
Length = 123
Score = 64.7 bits (156), Expect = 4e-08
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = -1
Query: 465 RVGGVIECSSRPQKKATAHHMKTRPKKTAPWDVKRR 358
R +ECSSRPQKK T HHMKTRPKKT PWD+KRR
Sbjct: 40 RAALAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 75
>ref|NP_001150884.1| plastid-specific ribosomal protein 6 [Zea mays]
gi|195642604|gb|ACG40770.1| plastid-specific ribosomal
protein 6 precursor [Zea mays]
Length = 123
Score = 64.7 bits (156), Expect = 4e-08
Identities = 27/36 (75%), Positives = 29/36 (80%)
Frame = -1
Query: 465 RVGGVIECSSRPQKKATAHHMKTRPKKTAPWDVKRR 358
R +ECSSRPQKK T HHMKTRPKKT PWD+KRR
Sbjct: 42 RAALAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 77