BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00011938
         (322 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_620106.1| RNA replicase/coat protein [Cherry virus A] gi|...    81   2e-13
gb|ADZ96383.1| RNA replicase, partial [Cherry virus A]                 80   2e-13
gb|AHB08904.1| replicase [Grapevine virus E]                           79   6e-13
gb|AAQ08825.1| replicase RdRp [Grapevine Red Globe virus]              79   6e-13
gb|ADZ96385.1| RNA replicase, partial [Cherry virus A]                 78   1e-12
emb|CBL43397.1| polyprotein [Cherry virus A]                           78   1e-12
ref|YP_002117775.1| replicase [Grapevine virus E] gi|195537531|d...    77   2e-12
gb|AGL40609.1| replicase [Grapevine virus E]                           76   5e-12
gb|ADH51680.1| replicase [Grapevine virus E]                           76   5e-12
dbj|BAG68229.1| replicase [Grapevine virus E]                          76   5e-12
ref|YP_004732978.1| rdRpol gene product [Grapevine Pinot gris vi...    74   2e-11
ref|YP_001285472.1| putative RNA-dependend RNA polymerase [Okra ...    74   2e-11
ref|YP_004293216.1| RNA polymerase [Grapevine berry inner necros...    74   2e-11
gb|ACV53023.1| polyprotein [Blackberry virus S]                        74   3e-11
gb|AET36885.1| putative replicase, partial [Actinidia virus A]         73   4e-11
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus...    73   5e-11
gb|ACJ70131.1| replicase polyprotein [Citrus leaf blotch virus]        73   5e-11
gb|ACJ70129.1| replicase polyprotein [Citrus leaf blotch virus]        73   5e-11
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]              73   5e-11
gb|ACF94734.1| putative replicase polyprotein [Citrus leaf blotc...    73   5e-11

>ref|NP_620106.1| RNA replicase/coat protein [Cherry virus A]
            gi|1008048|emb|CAA57896.1| RNA replicase [Cherry virus A]
          Length = 2342

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 43/106 (40%), Positives = 60/106 (56%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            TGE  T+ FNTL NM  T  +Y     H   FAGDD   N +L E   + +  +  +++ 
Sbjct: 1476 TGEFCTFLFNTLTNMLFTFMKYDVRKTHAICFAGDDMCANVRLPENHEYSSLLKKFSLKA 1535

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGELPMKVTS 3
            K D + S  FC W LS YGIVK+P  + ARL +A +KGE+ + + S
Sbjct: 1536 KVDFTRSPTFCGWNLSRYGIVKKPELIAARLAVARQKGEVNLVLDS 1581


>gb|ADZ96383.1| RNA replicase, partial [Cherry virus A]
          Length = 968

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 43/106 (40%), Positives = 60/106 (56%)
 Frame = -3

Query: 320 TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
           TGE  T+ FNTL NM  T  +Y     H   FAGDD   N +L E   +    +  +++ 
Sbjct: 102 TGEFCTFLFNTLTNMLFTFMKYDVRKTHAICFAGDDMCANVRLPENHQYSDLLKKFSLKA 161

Query: 140 KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGELPMKVTS 3
           K D + S  FC W LS YGIVK+P  + ARL +A++KGE+ + + S
Sbjct: 162 KVDFTRSPTFCGWNLSKYGIVKKPELIAARLAVAKQKGEVNLVLDS 207


>gb|AHB08904.1| replicase [Grapevine virus E]
          Length = 1698

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 41/100 (41%), Positives = 59/100 (59%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            +GE  T++FNT+ NMA T  RYQ     P AFAGDD     +L+   +  +    L ++ 
Sbjct: 1533 SGEFGTFFFNTMCNMAFTYLRYQLGPYQPIAFAGDDMVAPGRLVVNESMNSVLNQLELKA 1592

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGEL 21
            K + S+S +FC W +SPYGIVK+P  L  RL +   +G+L
Sbjct: 1593 KVNYSDSPLFCGWRMSPYGIVKDPNLLLDRLEMKRAEGKL 1632


>gb|AAQ08825.1| replicase RdRp [Grapevine Red Globe virus]
          Length = 424

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
 Frame = -3

Query: 320 TGEGPTWWFNTLFNMAVTGARY-QDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIR 144
           TGE  T+  N+ +N+AVT A++  D  +H    +GDD  ++     RP WP     L++R
Sbjct: 130 TGEPGTYDDNSDYNLAVTAAKFILDPEVHAVLISGDDLDISPPPPVRPTWPILEAMLSLR 189

Query: 143 FKSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGELPMKVTS 3
           FK++VS   +FC + L P G V+ P+ LFA+L IA + G +  K  S
Sbjct: 190 FKTEVSRYGLFCGYYLGPAGAVRSPLALFAKLIIAVDDGSIEDKKAS 236


>gb|ADZ96385.1| RNA replicase, partial [Cherry virus A]
          Length = 968

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 43/106 (40%), Positives = 59/106 (55%)
 Frame = -3

Query: 320 TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
           TGE  T+ FNTL NM  T  +Y     H   FAGDD   N +L E        +  +++ 
Sbjct: 102 TGEFCTFLFNTLTNMLFTFMKYDVRKTHAICFAGDDMCANVRLPENLQHTNLLKKFSLKA 161

Query: 140 KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGELPMKVTS 3
           K D + S  FC W LS YGIVK+P  + ARL +A++KGE+ + + S
Sbjct: 162 KVDFTRSPTFCGWNLSRYGIVKKPELIAARLAVAKQKGEVNLVLDS 207


>emb|CBL43397.1| polyprotein [Cherry virus A]
          Length = 2342

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 43/106 (40%), Positives = 59/106 (55%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            TGE  T+ FNTL NM  T  +Y     H   FAGDD   N +L E        +  +++ 
Sbjct: 1476 TGEFCTFLFNTLTNMLFTFMKYDVRKTHAICFAGDDMCANVRLPENLQHTNLLKKFSLKA 1535

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGELPMKVTS 3
            K D + S  FC W LS YGIVK+P  + ARL +A++KGE+ + + S
Sbjct: 1536 KVDFTRSPTFCGWNLSRYGIVKKPELIAARLAVAKQKGEVNLVLDS 1581


>ref|YP_002117775.1| replicase [Grapevine virus E] gi|195537531|dbj|BAG68224.1| replicase
            [Grapevine virus E]
          Length = 1698

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 40/100 (40%), Positives = 59/100 (59%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            +GE  T++FNT+ NMA +  RYQ     P AFAGDD     +L+   +  +    L ++ 
Sbjct: 1533 SGEFGTFFFNTMCNMAFSYLRYQLGPYQPIAFAGDDMVAPGRLVVNESMNSVLNQLELKA 1592

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGEL 21
            K + S+S +FC W +SPYGIVK+P  L  RL +   +G+L
Sbjct: 1593 KVNYSDSPLFCGWRMSPYGIVKDPNLLLDRLEMKRAEGKL 1632


>gb|AGL40609.1| replicase [Grapevine virus E]
          Length = 1699

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 41/100 (41%), Positives = 58/100 (58%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            +GE  T++FNT+ NMA T  RY      P AFAGDD     +LI      +    L ++ 
Sbjct: 1533 SGEFGTFFFNTMCNMAFTYLRYFIGPNQPIAFAGDDMVAPGQLIVNNTMSSILNQLELKA 1592

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGEL 21
            K + S+S +FC W +SPYGIVK+P  L  RL + + +G+L
Sbjct: 1593 KVNYSDSPLFCGWRMSPYGIVKDPNLLLDRLEMKKAEGKL 1632


>gb|ADH51680.1| replicase [Grapevine virus E]
          Length = 1699

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 41/100 (41%), Positives = 58/100 (58%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            +GE  T++FNT+ NMA T  RY      P AFAGDD     +LI      +    L ++ 
Sbjct: 1533 SGEFGTFFFNTMCNMAFTYLRYFIGPNQPIAFAGDDMVAPGQLIVNNTMSSILNQLELKA 1592

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGEL 21
            K + S+S +FC W +SPYGIVK+P  L  RL + + +G+L
Sbjct: 1593 KVNYSDSPLFCGWRMSPYGIVKDPNLLLDRLEMKKAEGKL 1632


>dbj|BAG68229.1| replicase [Grapevine virus E]
          Length = 274

 Score = 75.9 bits (185), Expect = 5e-12
 Identities = 41/100 (41%), Positives = 58/100 (58%)
 Frame = -3

Query: 320 TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
           +GE  T++FNT+ NMA T  RY      P AFAGDD     +LI      +    L ++ 
Sbjct: 108 SGEFGTFFFNTMCNMAFTYLRYFIGPNQPIAFAGDDMVAPGQLIVNNTMSSILNQLELKA 167

Query: 140 KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGEL 21
           K + S+S +FC W +SPYGIVK+P  L  RL + + +G+L
Sbjct: 168 KVNYSDSPLFCGWRMSPYGIVKDPNLLLDRLEMKKAEGKL 207


>ref|YP_004732978.1| rdRpol gene product [Grapevine Pinot gris virus]
            gi|339279319|emb|CCC20963.1| RNA dependent RNA polymerase
            [Grapevine Pinot gris virus]
          Length = 1845

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 41/106 (38%), Positives = 60/106 (56%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            TGE  T+ FNT  NMA T  RYQ +   P  FAGDD    + L E   + AF +  +++ 
Sbjct: 1666 TGEFCTFLFNTFCNMAFTFMRYQMSGHEPICFAGDDMCALADLKESDEYNAFFKSFSLKA 1725

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGELPMKVTS 3
            K   +   +FC W L+ +G+ KEP+ ++ RL IA EK +L + + S
Sbjct: 1726 KVCRTVKPLFCGWRLTKFGLYKEPVLVYERLKIAIEKDKLDLVIDS 1771


>ref|YP_001285472.1| putative RNA-dependend RNA polymerase [Okra mosaic virus]
            gi|146762518|gb|ABQ45359.1| putative RNA-dependend RNA
            polymerase [Okra mosaic virus]
          Length = 1816

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 38/101 (37%), Positives = 60/101 (59%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            TGE  T+  NT +N+AV  ++Y  +  H    +GDDS +     ERP WP+  R L +RF
Sbjct: 1613 TGEPGTYDDNTDYNLAVLFSQYDLSSTHVMV-SGDDSLIAGLPTERPEWPSIHRLLHLRF 1671

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGELP 18
            K++ ++  +FC + + P G ++ P+ LFA+L IA +   LP
Sbjct: 1672 KTETTSQPLFCGYYVGPAGAIRNPLALFAKLMIAFDDDALP 1712


>ref|YP_004293216.1| RNA polymerase [Grapevine berry inner necrosis virus]
            gi|325910825|dbj|BAB47271.2| RNA polymerase [Grapevine
            berry inner necrosis virus]
          Length = 1867

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 41/106 (38%), Positives = 59/106 (55%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            TGE  T+ FNT  NMA T  RY+     P  FAGDD    + L E   + +F R   ++ 
Sbjct: 1675 TGEFCTFLFNTFCNMAFTFLRYEMQGNEPVCFAGDDMCALADLKESKEFDSFFRSFTLKA 1734

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGELPMKVTS 3
            K   + + +FC W L+ +G+ KEP+ +F RL IA EK +L + + S
Sbjct: 1735 KVCRTLNPLFCGWRLTRFGLFKEPVLIFERLKIAMEKDKLDLVIES 1780


>gb|ACV53023.1| polyprotein [Blackberry virus S]
          Length = 2035

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 41/106 (38%), Positives = 59/106 (55%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            TGE  T+  N+ +N+AV    Y  +H+ P   +GDDS ++ +   RP W A    LA+RF
Sbjct: 1594 TGEPGTYDDNSDYNLAVINLEYSASHV-PTMISGDDSLLDFEPPRRPEWSALEPLLALRF 1652

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGELPMKVTS 3
            K +    A FC + +   G V+ PI LFA+L IA + G L  K+ S
Sbjct: 1653 KKERDRYATFCGYYVGKAGAVRSPIALFAKLMIAVDDGSLGDKLIS 1698


>gb|AET36885.1| putative replicase, partial [Actinidia virus A]
          Length = 1714

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 40/101 (39%), Positives = 54/101 (53%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            +GE  T++FNT+ NMA T  RY      P  +AGDD      L    ++      L+++ 
Sbjct: 1531 SGEFGTFFFNTICNMAFTCLRYNINESTPVCYAGDDMYAPGALTLNKSYEHILDQLSLKA 1590

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGELP 18
            K  VS + +FC W +SPYGIVK+P  L  R  IA   G LP
Sbjct: 1591 KVRVSTTPLFCGWRMSPYGIVKDPNLLLDRWKIAHRNGNLP 1631


>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
            gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
            replication protein; Includes: RecName: Full=RNA-directed
            RNA polymerase; Includes: RecName: Full=Helicase
            gi|14270249|emb|CAC39422.1| hypothetical protein [Citrus
            leaf blotch virus]
          Length = 1962

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 39/100 (39%), Positives = 59/100 (59%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            TGE  T+ FNTL NMA T  RY+     P AFAGDD    + L    ++      ++++ 
Sbjct: 1798 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 1857

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGEL 21
            K + + + +FC W L+PYGIVKEP  ++ R  +A E+G++
Sbjct: 1858 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV 1897


>gb|ACJ70131.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 151

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 39/100 (39%), Positives = 59/100 (59%)
 Frame = -3

Query: 320 TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
           TGE  T+ FNTL NMA T  RY+     P AFAGDD    + L    ++      ++++ 
Sbjct: 49  TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 108

Query: 140 KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGEL 21
           K + + + +FC W L+PYGIVKEP  ++ R  +A E+G++
Sbjct: 109 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV 148


>gb|ACJ70129.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 152

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 39/100 (39%), Positives = 58/100 (58%)
 Frame = -3

Query: 320 TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
           TGE  T+ FNTL NMA T  RY+     P AFAGDD    + L    ++      +++  
Sbjct: 49  TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAACHDFDDLFELISLEA 108

Query: 140 KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGEL 21
           K + + + +FC W L+PYGIVKEP  ++ R  +A E+G++
Sbjct: 109 KVERTETPMFCGWRLTPYGIVKEPELVYIRFQVAIEEGKV 148


>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
          Length = 1962

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 39/100 (39%), Positives = 59/100 (59%)
 Frame = -3

Query: 320  TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
            TGE  T+ FNTL NMA T  RY+     P AFAGDD    + L    ++      ++++ 
Sbjct: 1798 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 1857

Query: 140  KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGEL 21
            K + + + +FC W L+PYGIVKEP  ++ R  +A E+G++
Sbjct: 1858 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV 1897


>gb|ACF94734.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 289

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 39/100 (39%), Positives = 59/100 (59%)
 Frame = -3

Query: 320 TGEGPTWWFNTLFNMAVTGARYQDAHIHPRAFAGDDSSVNSKLIERPNWPAFSRHLAIRF 141
           TGE  T+ FNTL NMA T  RY+     P AFAGDD    + L    ++      ++++ 
Sbjct: 125 TGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKA 184

Query: 140 KSDVSNSAVFCTWILSPYGIVKEPITLFARLHIAEEKGEL 21
           K + + + +FC W L+PYGIVKEP  ++ R  +A E+G++
Sbjct: 185 KVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKV 224