BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00011577
         (224 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [...   100   2e-19
ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [...   100   2e-19
emb|CBI31488.3| unnamed protein product [Vitis vinifera]              100   4e-19
ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [...   100   4e-19
ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [...    99   8e-19
ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like...    97   2e-18
ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like...    97   2e-18
ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [...    97   2e-18
ref|XP_007009784.1| Pseudouridine synthase family protein [Theob...    95   1e-17
ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatul...    94   2e-17
tpg|DAA44822.1| TPA: hypothetical protein ZEAMMB73_460577 [Zea m...    93   3e-17
tpg|DAA44821.1| TPA: RNA binding protein [Zea mays]                    93   3e-17
tpg|DAA44820.1| TPA: hypothetical protein ZEAMMB73_460577 [Zea m...    93   3e-17
gb|ACG32783.1| RNA binding protein [Zea mays]                          93   3e-17
gb|ADE76199.1| unknown [Picea sitchensis]                              92   6e-17
gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]            92   8e-17
dbj|BAJ90823.1| predicted protein [Hordeum vulgare subsp. vulgar...    91   1e-16
ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like...    91   2e-16
ref|XP_006346975.1| PREDICTED: RNA pseudouridine synthase 5-like...    91   2e-16
gb|EMS51962.1| RNA pseudourine synthase 5 [Triticum urartu]            91   2e-16

>ref|XP_004157313.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  100 bits (250), Expect = 2e-19
 Identities = 45/74 (60%), Positives = 57/74 (77%)
 Frame = -1

Query: 224 LVQKMETIGVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQI 45
           L +  + IG+PWPDLN GL Y D V P  SG SLI FYS  +K+SAP +GWLQRI+N QI
Sbjct: 3   LGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQI 62

Query: 44  TIDGQIVTDPDTVL 3
           TIDG+++TDP+T+L
Sbjct: 63  TIDGEVITDPETIL 76


>ref|XP_004143830.1| PREDICTED: RNA pseudourine synthase 5-like [Cucumis sativus]
          Length = 371

 Score =  100 bits (250), Expect = 2e-19
 Identities = 45/74 (60%), Positives = 57/74 (77%)
 Frame = -1

Query: 224 LVQKMETIGVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQI 45
           L +  + IG+PWPDLN GL Y D V P  SG SLI FYS  +K+SAP +GWLQRI+N QI
Sbjct: 3   LGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQI 62

Query: 44  TIDGQIVTDPDTVL 3
           TIDG+++TDP+T+L
Sbjct: 63  TIDGEVITDPETIL 76


>emb|CBI31488.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score = 99.8 bits (247), Expect = 4e-19
 Identities = 44/69 (63%), Positives = 52/69 (75%)
 Frame = -1

Query: 209 ETIGVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQ 30
           +T GVPWPD N GLTY D V  S S  +LID+YS  HKNSAP +GWLQRI  GQIT+DG 
Sbjct: 3   KTFGVPWPDFNDGLTYNDVVSASDSELTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGT 62

Query: 29  IVTDPDTVL 3
           +VT+P T+L
Sbjct: 63  VVTEPKTIL 71


>ref|XP_002276664.1| PREDICTED: RNA pseudourine synthase 5-like [Vitis vinifera]
          Length = 348

 Score = 99.8 bits (247), Expect = 4e-19
 Identities = 44/69 (63%), Positives = 52/69 (75%)
 Frame = -1

Query: 209 ETIGVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQ 30
           +T GVPWPD N GLTY D V  S S  +LID+YS  HKNSAP +GWLQRI  GQIT+DG 
Sbjct: 3   KTFGVPWPDFNDGLTYNDVVSASDSELTLIDYYSSKHKNSAPLQGWLQRINKGQITVDGT 62

Query: 29  IVTDPDTVL 3
           +VT+P T+L
Sbjct: 63  VVTEPKTIL 71


>ref|XP_004307403.1| PREDICTED: RNA pseudourine synthase 5-like [Fragaria vesca subsp.
           vesca]
          Length = 375

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 43/69 (62%), Positives = 55/69 (79%)
 Frame = -1

Query: 209 ETIGVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQ 30
           +T G+PWPDLN GL+Y D V  S S  +LI+FYS  +K+SAP +GWLQRIRNGQIT+DG+
Sbjct: 11  QTFGLPWPDLNDGLSYNDVVKSSDSELTLIEFYSSKYKSSAPLQGWLQRIRNGQITVDGE 70

Query: 29  IVTDPDTVL 3
           +V D DT+L
Sbjct: 71  VVRDSDTIL 79


>ref|XP_006485880.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X2 [Citrus
           sinensis] gi|568865018|ref|XP_006485881.1| PREDICTED:
           RNA pseudouridine synthase 5-like isoform X3 [Citrus
           sinensis]
          Length = 389

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 42/70 (60%), Positives = 53/70 (75%)
 Frame = -1

Query: 212 METIGVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDG 33
           +   G PWP LN+GL Y D V PS S  +LI+FYS  HKNSAP +GWLQRI+NGQIT+DG
Sbjct: 10  LAVFGEPWPQLNEGLLYNDVVSPSDSKLTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDG 69

Query: 32  QIVTDPDTVL 3
           ++V DP+ +L
Sbjct: 70  RVVNDPNIIL 79


>ref|XP_006485879.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Citrus
           sinensis]
          Length = 390

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 42/70 (60%), Positives = 53/70 (75%)
 Frame = -1

Query: 212 METIGVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDG 33
           +   G PWP LN+GL Y D V PS S  +LI+FYS  HKNSAP +GWLQRI+NGQIT+DG
Sbjct: 10  LAVFGEPWPQLNEGLLYNDVVSPSDSKLTLIEFYSTKHKNSAPLQGWLQRIQNGQITVDG 69

Query: 32  QIVTDPDTVL 3
           ++V DP+ +L
Sbjct: 70  RVVNDPNIIL 79


>ref|XP_004496322.1| PREDICTED: RNA pseudourine synthase 5-like [Cicer arietinum]
          Length = 368

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 41/73 (56%), Positives = 59/73 (80%)
 Frame = -1

Query: 221 VQKMETIGVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQIT 42
           + + + IGVPWP+LN GL+Y D V PS +G +LI+FYS  +K+SAP +GWLQRI++ QIT
Sbjct: 1   MSRQKKIGVPWPELNDGLSYNDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQIT 60

Query: 41  IDGQIVTDPDTVL 3
           +D ++VTDP+T+L
Sbjct: 61  VDAKVVTDPNTLL 73


>ref|XP_007009784.1| Pseudouridine synthase family protein [Theobroma cacao]
           gi|508726697|gb|EOY18594.1| Pseudouridine synthase
           family protein [Theobroma cacao]
          Length = 378

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 40/66 (60%), Positives = 54/66 (81%)
 Frame = -1

Query: 200 GVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQIVT 21
           G+PWP+LN GL Y D + PS S  +LI+FYS  +KNSAP +GWLQRI+NGQI++DG++V 
Sbjct: 13  GLPWPELNDGLFYDDVIKPSDSELTLIEFYSSKYKNSAPSQGWLQRIQNGQISVDGRVVR 72

Query: 20  DPDTVL 3
           DP+T+L
Sbjct: 73  DPNTIL 78


>ref|XP_003591952.1| RNA pseudourine synthase [Medicago truncatula]
           gi|358349060|ref|XP_003638558.1| RNA pseudourine
           synthase [Medicago truncatula]
           gi|355481000|gb|AES62203.1| RNA pseudourine synthase
           [Medicago truncatula] gi|355504493|gb|AES85696.1| RNA
           pseudourine synthase [Medicago truncatula]
          Length = 371

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 39/67 (58%), Positives = 55/67 (82%)
 Frame = -1

Query: 203 IGVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQIV 24
           IG+PWP+ N GL+Y D V PS +G +LI+FYS  +K+SAP +GWLQRI++ QIT+D ++V
Sbjct: 7   IGIPWPEFNDGLSYDDVVRPSDAGLTLIEFYSTKYKSSAPLQGWLQRIKSDQITLDARVV 66

Query: 23  TDPDTVL 3
           TDP+T+L
Sbjct: 67  TDPNTIL 73


>tpg|DAA44822.1| TPA: hypothetical protein ZEAMMB73_460577 [Zea mays]
          Length = 92

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
 Frame = -1

Query: 206 TIGVPWPDLNQGLTYIDTV--LPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDG 33
           + G PWP+LNQGLTY DT     + +  +LI+FYS  HK+SAP  GW++RIRNGQIT+DG
Sbjct: 22  SFGTPWPELNQGLTYTDTFRCADADAATTLIEFYSTNHKSSAPLPGWIKRIRNGQITVDG 81

Query: 32  QIVTDPDTVL 3
           ++VTDPD  L
Sbjct: 82  EVVTDPDMTL 91


>tpg|DAA44821.1| TPA: RNA binding protein [Zea mays]
          Length = 243

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
 Frame = -1

Query: 206 TIGVPWPDLNQGLTYIDTV--LPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDG 33
           + G PWP+LNQGLTY DT     + +  +LI+FYS  HK+SAP  GW++RIRNGQIT+DG
Sbjct: 22  SFGTPWPELNQGLTYTDTFRCADADAATTLIEFYSTNHKSSAPLPGWIKRIRNGQITVDG 81

Query: 32  QIVTDPDTVL 3
           ++VTDPD  L
Sbjct: 82  EVVTDPDMTL 91


>tpg|DAA44820.1| TPA: hypothetical protein ZEAMMB73_460577 [Zea mays]
          Length = 94

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
 Frame = -1

Query: 206 TIGVPWPDLNQGLTYIDTV--LPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDG 33
           + G PWP+LNQGLTY DT     + +  +LI+FYS  HK+SAP  GW++RIRNGQIT+DG
Sbjct: 22  SFGTPWPELNQGLTYTDTFRCADADAATTLIEFYSTNHKSSAPLPGWIKRIRNGQITVDG 81

Query: 32  QIVTDPDTVL 3
           ++VTDPD  L
Sbjct: 82  EVVTDPDMTL 91


>gb|ACG32783.1| RNA binding protein [Zea mays]
          Length = 379

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
 Frame = -1

Query: 206 TIGVPWPDLNQGLTYIDTV--LPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDG 33
           + G PWP+LNQGLTY DT     + +  +LI+FYS  HK+SAP  GW++RIRNGQIT+DG
Sbjct: 13  SFGTPWPELNQGLTYTDTFRCADADAATTLIEFYSTNHKSSAPLPGWIKRIRNGQITVDG 72

Query: 32  QIVTDPDTVL 3
           ++VTDPD  L
Sbjct: 73  EVVTDPDMTL 82


>gb|ADE76199.1| unknown [Picea sitchensis]
          Length = 386

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 40/66 (60%), Positives = 52/66 (78%)
 Frame = -1

Query: 200 GVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQIVT 21
           G+PWP+ N GL+Y DTV  + +  +LIDFYS  +++SAP KGWLQRI NGQIT+DG+ V 
Sbjct: 4   GIPWPEFNDGLSYTDTVKSTSTPPTLIDFYSSRYESSAPRKGWLQRIHNGQITVDGKTVN 63

Query: 20  DPDTVL 3
           +PDTVL
Sbjct: 64  EPDTVL 69


>gb|EXB80105.1| RNA pseudourine synthase 5 [Morus notabilis]
          Length = 377

 Score = 92.0 bits (227), Expect = 8e-17
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = -1

Query: 200 GVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQIVT 21
           G  WP+LN GL Y D V  S S  +LI FYS+ +KNSAP +GWLQRIRNGQIT++G++V 
Sbjct: 15  GFSWPELNDGLFYSDVVRTSDSESTLIQFYSRKYKNSAPLQGWLQRIRNGQITVNGRVVR 74

Query: 20  DPDTVL 3
           DPDT+L
Sbjct: 75  DPDTIL 80


>dbj|BAJ90823.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326504092|dbj|BAK02832.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 389

 Score = 91.3 bits (225), Expect = 1e-16
 Identities = 41/68 (60%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
 Frame = -1

Query: 200 GVPWPDLNQGLTYIDTV--LPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQI 27
           G PWPDLN GL+Y DT     +++  +LIDFYS+ +K+SAP  GW+ RIRNGQIT+DGQ+
Sbjct: 19  GRPWPDLNAGLSYTDTFRGADAETTTTLIDFYSENYKSSAPLPGWIHRIRNGQITVDGQV 78

Query: 26  VTDPDTVL 3
           VTDPD +L
Sbjct: 79  VTDPDIIL 86


>ref|XP_006346977.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X3 [Solanum
           tuberosum]
          Length = 374

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 41/66 (62%), Positives = 52/66 (78%)
 Frame = -1

Query: 200 GVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQIVT 21
           GV WP+LN+GLTY D V P+ +G  LI+FY + +KNSAP +GWLQRI+N QITIDG++V 
Sbjct: 15  GVSWPELNEGLTYHDIVRPTDAGLMLIEFYFRKYKNSAPLQGWLQRIQNKQITIDGKVVI 74

Query: 20  DPDTVL 3
            PDT L
Sbjct: 75  LPDTEL 80


>ref|XP_006346975.1| PREDICTED: RNA pseudouridine synthase 5-like isoform X1 [Solanum
           tuberosum] gi|565360441|ref|XP_006346976.1| PREDICTED:
           RNA pseudouridine synthase 5-like isoform X2 [Solanum
           tuberosum]
          Length = 379

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 41/66 (62%), Positives = 52/66 (78%)
 Frame = -1

Query: 200 GVPWPDLNQGLTYIDTVLPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQIVT 21
           GV WP+LN+GLTY D V P+ +G  LI+FY + +KNSAP +GWLQRI+N QITIDG++V 
Sbjct: 15  GVSWPELNEGLTYHDIVRPTDAGLMLIEFYFRKYKNSAPLQGWLQRIQNKQITIDGKVVI 74

Query: 20  DPDTVL 3
            PDT L
Sbjct: 75  LPDTEL 80


>gb|EMS51962.1| RNA pseudourine synthase 5 [Triticum urartu]
          Length = 352

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 40/68 (58%), Positives = 54/68 (79%), Gaps = 2/68 (2%)
 Frame = -1

Query: 200 GVPWPDLNQGLTYIDTV--LPSKSGYSLIDFYSKTHKNSAPFKGWLQRIRNGQITIDGQI 27
           G PWPDLN+GL+Y DT     +++  +LI+FYS+ +K+SAP  GW+ RIRNGQIT+DGQ+
Sbjct: 19  GRPWPDLNEGLSYTDTFRGADAETTAALINFYSENYKSSAPLPGWIHRIRNGQITVDGQV 78

Query: 26  VTDPDTVL 3
           VTDPD +L
Sbjct: 79  VTDPDMIL 86