BLASTX nr result
ID: Cocculus23_contig00011168
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00011168
(464 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 87 3e-15
ref|WP_010863388.1| hypothetical protein, partial [Plesiomonas s... 80 2e-13
gb|AFB73911.1| polyprotein [Citrus sinensis] 76 6e-12
gb|AFB73912.1| polyprotein [Citrus sinensis] 73 5e-11
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 70 3e-10
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 69 5e-10
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 69 7e-10
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 69 7e-10
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 68 1e-09
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 68 1e-09
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group] 68 1e-09
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 67 3e-09
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 67 3e-09
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 67 3e-09
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 67 3e-09
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 66 4e-09
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 66 4e-09
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 66 4e-09
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 66 6e-09
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 65 7e-09
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 86.7 bits (213), Expect = 3e-15
Identities = 48/111 (43%), Positives = 66/111 (59%)
Frame = -2
Query: 334 KAPAPETSEQSDSDVEASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARYANTV 155
K P + SDS + E + E E S IA R+ +R+ +KP+R+ + V
Sbjct: 724 KVVIPTRNTTSDS----AMAEEESDEEEVPTQESQQQSAPIAVRRQRRDIQKPSRFMDMV 779
Query: 154 ALALPVLEDGIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
A ALPV++D IP+TY EA+ SES W AM+EEMQSL KN+TW+L + PK
Sbjct: 780 AYALPVVDD-IPSTYPEAIMSSESGNWAGAMEEEMQSLKKNKTWKLAQLPK 829
>ref|WP_010863388.1| hypothetical protein, partial [Plesiomonas shigelloides]
gi|499066378|gb|EON88779.1| hypothetical protein
PLESHI_08829, partial [Plesiomonas shigelloides 302-73]
Length = 112
Score = 80.5 bits (197), Expect = 2e-13
Identities = 50/114 (43%), Positives = 66/114 (57%)
Frame = -2
Query: 343 PTNKAPAPETSEQSDSDVEASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARYA 164
P+ PA E + D E S E D++ EP +SIA R+ KR + PARYA
Sbjct: 7 PSIVVPASEKTHVVD---EESIEEEVDTE------EPQQQLESIANRRPKRTMRVPARYA 57
Query: 163 NTVALALPVLEDGIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
NTVA A + + TY+EAV +SE A W+ AM+EEM+SL KN+TW+L PK
Sbjct: 58 NTVAEASVLEIHEVLTTYQEAVNNSEGAKWRIAMEEEMKSLDKNKTWKLYNLPK 111
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 75.9 bits (185), Expect = 6e-12
Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 6/98 (6%)
Frame = -2
Query: 277 PESSDSDTEASVHEPLDHSDSIA--CRKGKRERKKP---ARYANTVALALPVL-EDGIPA 116
PE+SDS A HE + +S A R+ RER+ P + Y + +A +L EDG P+
Sbjct: 734 PENSDSSEAAPEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCLLTEDGEPS 793
Query: 115 TYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
T+ EA+ S+ ALW AM EE+++LHKN+TWELV P+
Sbjct: 794 TFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPLPR 831
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 72.8 bits (177), Expect = 5e-11
Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Frame = -2
Query: 277 PESSDSDTEASVHEPLDHSDSIA--CRKGKRERKKP---ARYANTVALALPVL-EDGIPA 116
PE+SDS A HE + +S A R+ RER+ P + Y + +A +L EDG P+
Sbjct: 734 PENSDSSEAAPEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCLLTEDGEPS 793
Query: 115 TYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPP 5
T+ EA+ + ALW AM EE+++LHKN+TWELV P
Sbjct: 794 TFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLP 830
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 70.1 bits (170), Expect = 3e-10
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Frame = -2
Query: 307 QSDSDVEASFPESSDSDTEASVHE--PLDHSDSIACRKGKRER-KKPARYA--NTVALAL 143
Q++SD++ E + TE + E P D SIA + +R + P RY + V AL
Sbjct: 721 QNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYAL 780
Query: 142 PVLED---GIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPP 5
V E+ P+TYKEA+ S+S W AM +EM+SLHKNQTW+LV P
Sbjct: 781 QVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQP 829
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 69.3 bits (168), Expect = 5e-10
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Frame = -2
Query: 313 SEQSDSDVEASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARYA--------NT 158
+++ + +V+A D +E + S SIA + +RE ++P RY N
Sbjct: 839 NQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQSIAAHRPRREIRRPMRYVDCVSANITNP 898
Query: 157 VALALPVLED---GIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
VA AL V E+ P +YKEA+ +S W +MD+EM SL KNQTWELV P+
Sbjct: 899 VAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPE 953
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 68.9 bits (167), Expect = 7e-10
Identities = 38/100 (38%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Frame = -2
Query: 289 EASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARYANTVALALPVL----EDGI 122
E S E+S+++ E EP + +D+ R+ R+ +KP+ ++ V + EDG
Sbjct: 729 EKSGEENSEAEPEHEEQEPNEVNDAEP-RRTTRQIRKPSWHSEYVMASHDAYCLLSEDGE 787
Query: 121 PATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
P+T+ EAV S+++LW AM EE+++LH+N TWELV PK
Sbjct: 788 PSTFHEAVNGSDASLWMAAMQEEIEALHRNNTWELVELPK 827
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 68.9 bits (167), Expect = 7e-10
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Frame = -2
Query: 313 SEQSDSDVEASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARYA--------NT 158
+++ + +V+A D +E + S SIA + +RE ++P RY N
Sbjct: 1052 NQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQSIAAXRPRREIRRPMRYVDCVSANITNP 1111
Query: 157 VALALPVLED---GIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
VA AL V E+ P +YKEA+ +S W +MD+EM SL KNQTWELV P+
Sbjct: 1112 VAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPE 1166
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 68.2 bits (165), Expect = 1e-09
Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 7/98 (7%)
Frame = -2
Query: 274 ESSDSDTEASVHE---PLDHSDSIACRKGKRERKKPARYANTVALALP----VLEDGIPA 116
+ SDS SVHE P D +D + R+ R+ +KP+ ++ V + + E+G P+
Sbjct: 732 KESDSSEAESVHEEQEPDDVNDGV--RRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPS 789
Query: 115 TYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
T+ EA+ S+++ W AM EEM++LH+N+TWELV PK
Sbjct: 790 TFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPK 827
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 68.2 bits (165), Expect = 1e-09
Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 7/98 (7%)
Frame = -2
Query: 274 ESSDSDTEASVHE---PLDHSDSIACRKGKRERKKPARYANTVALALP----VLEDGIPA 116
+ SDS SVHE P D +D + R+ R+ +KP+ ++ V + + E+G P+
Sbjct: 732 KESDSSEAESVHEEQEPDDVNDGV--RRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPS 789
Query: 115 TYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
T+ EA+ S+++ W AM EEM++LH+N+TWELV PK
Sbjct: 790 TFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPK 827
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
Length = 1007
Score = 68.2 bits (165), Expect = 1e-09
Identities = 45/110 (40%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Frame = -2
Query: 310 EQSDSDVEASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARY---ANTVALALP 140
E+ + + P DSD+ P IA K KR K P RY AN VA AL
Sbjct: 531 EKENVAINQDVPVIEDSDSSTVQQSP---KRFIAKDKPKRNTKPPQRYIEEANIVAYALS 587
Query: 139 VLED----GIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
V ED P+TY EA+ + W AM +EM+SL KN TWELV+ PK
Sbjct: 588 VAEDIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 637
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 67.0 bits (162), Expect = 3e-09
Identities = 45/115 (39%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Frame = -2
Query: 322 PETSEQSDSDVEASFPESSDS-DTEASVHEPLDHSDSIACRKGKRERKKPARY---ANTV 155
PE E +V + + ++ D H SIA K KR K P RY AN V
Sbjct: 127 PEKLELVGGNVVGALGTNRETIDVRERQHHEQSPKRSIAKEKPKRSTKPPQRYIEEANIV 186
Query: 154 ALALPVLED----GIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
A AL V E+ P+TY EA+ + W AM +EM+SL KN TWELV+ PK
Sbjct: 187 AYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 241
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 66.6 bits (161), Expect = 3e-09
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Frame = -2
Query: 319 ETSEQSDSDVEASFPESSDSDTEASVHEPLDHSDSI-ACRKGKRERKKPARYAN-----T 158
E E + VE F + S S+ E + EP S R+ RE+++P +++
Sbjct: 711 EKPETTQIQVEEEFEQDS-SEAEPAHEEPEPESSGAPTTRQSDREKRRPTWHSDYVMEGN 769
Query: 157 VALALPVLEDGIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
VA L + EDG P+T++EA+ S+ + W AM EE+++LHKN TW+LV P+
Sbjct: 770 VAYCL-LTEDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQ 820
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 66.6 bits (161), Expect = 3e-09
Identities = 44/107 (41%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Frame = -2
Query: 289 EASFPESSDSDTEASVHEPLDH------SDSIACRKGKRERKKPARY--ANTVALALPVL 134
E S SS + E VHE + S ++ + KR+ K P RY A A AL V
Sbjct: 704 EKSKETSSKTAQEEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVA 763
Query: 133 EDGI---PATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
E+ + P TY+EA+ +E+ W KA+ EEM SL KN+TWELV PK
Sbjct: 764 EEIVDMEPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPK 810
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 66.6 bits (161), Expect = 3e-09
Identities = 46/110 (41%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Frame = -2
Query: 310 EQSDSDVEASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARY---ANTVALALP 140
E+ D + DSD+ A P SIA K KR K P RY AN VA AL
Sbjct: 628 EKEDVAINQDASVIEDSDSSAVQQSP---KRSIAKDKPKRNIKPPRRYIEEANIVAYALS 684
Query: 139 VLED----GIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
V E+ P+TY EA+ W AM +EM+SL KN TWELV+ PK
Sbjct: 685 VAEEIEGNAEPSTYSEAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPK 734
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 66.2 bits (160), Expect = 4e-09
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Frame = -2
Query: 364 IVISKGVPTNKAPAPETSEQSDSDVEASFPESSDSDTEASVHEPLDHSD-SIACRKGKRE 188
+V ++ +K TS+++ + SDS VHE + D + R+ R+
Sbjct: 702 VVFAENELQSKQKNDSTSKETAIVQMEEKSKESDSSEAEPVHEEQEPDDVNNGVRRSTRQ 761
Query: 187 RKKPARYANTVALALP----VLEDGIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWE 20
+KP+ ++ V + + E+G P+T+ EA+ S+++ W AM EEM++LH+N+TWE
Sbjct: 762 TQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWE 821
Query: 19 LVRPPK 2
LV PK
Sbjct: 822 LVELPK 827
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 66.2 bits (160), Expect = 4e-09
Identities = 44/110 (40%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Frame = -2
Query: 310 EQSDSDVEASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARYANTVALALPVLE 131
EQ D + + + ++ D + L+ SIA RK KR K P R L+ L
Sbjct: 749 EQDDHNNDVADDDAHDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALS 808
Query: 130 DGI-------PATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
PATYKEAVR +S W AM EEMQSL KN TWE+V PK
Sbjct: 809 CAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPK 858
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 66.2 bits (160), Expect = 4e-09
Identities = 45/110 (40%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Frame = -2
Query: 310 EQSDSDVEASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARY---ANTVALALP 140
E+ D + P DSD+ P SIA K KR K P RY A VA AL
Sbjct: 721 EKEDVAINQDAPVIEDSDSSIVHQSP---KRSIAKDKPKRNIKPPRRYIEEAKIVAYALS 777
Query: 139 VLE----DGIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
V E + P+TY EA+ + W AM +EM+SL KN TWELV+ PK
Sbjct: 778 VAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 827
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 65.9 bits (159), Expect = 6e-09
Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Frame = -2
Query: 310 EQSDSDVEASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARY---ANTVALALP 140
E+ D + P DS++ P SIA + KR K P RY AN VA AL
Sbjct: 956 EKEDVAINQDEPVIEDSNSSIVQQSP---KRSIAKDRPKRNIKPPQRYIEEANIVAYALS 1012
Query: 139 VLED----GIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
V E+ P+TY EA+ + W AM +EM+SL KN TWELV+ PK
Sbjct: 1013 VAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 1062
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 65.5 bits (158), Expect = 7e-09
Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Frame = -2
Query: 310 EQSDSDVEASFPESSDSDTEASVHEPLDHSDSIACRKGKRERKKPARY---ANTVALALP 140
E+ + + P DSD+ P SIA K KR K P RY AN VA AL
Sbjct: 710 EKENVAINLDAPVIEDSDSSIVQQSP---KHSIAKDKPKRNIKPPRRYIEEANIVAYALS 766
Query: 139 VLED----GIPATYKEAVRDSESALWQKAMDEEMQSLHKNQTWELVRPPK 2
V E+ P+TY +A+ + W AM +EM+SL KN TWELV+ PK
Sbjct: 767 VAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 816