BLASTX nr result
ID: Cocculus23_contig00011029
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00011029
(1451 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 63 3e-12
ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 63 3e-12
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca... 62 1e-11
gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza] 62 1e-11
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 62 3e-11
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 62 3e-11
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 62 5e-11
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu... 59 1e-10
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 62 1e-10
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 62 2e-10
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 62 2e-10
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 62 3e-10
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus... 60 3e-10
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 60 4e-10
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 60 6e-10
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 60 6e-10
ref|XP_007137030.1| hypothetical protein PHAVU_009G093700g [Phas... 60 1e-09
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 57 1e-09
ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago trunc... 61 1e-09
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 61 1e-09
>ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer
arietinum]
Length = 1247
Score = 63.2 bits (152), Expect(2) = 3e-12
Identities = 34/74 (45%), Positives = 43/74 (58%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A CS+YGAL K + L EL V F K KL M LK K++ +FMGK+ QSYK
Sbjct: 973 VVHADCSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEHHQSYK 1032
Query: 320 LNKIMGEFYWVVGD 361
KI+G Y + D
Sbjct: 1033 SKKILGRLYRQIKD 1046
Score = 36.6 bits (83), Expect(2) = 3e-12
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 67 TNRHIIDLFTKNMVNEYLGTIC 132
T R IID F KNMVNE+LG+IC
Sbjct: 948 TIRDIIDFFVKNMVNEHLGSIC 969
Score = 59.7 bits (143), Expect = 3e-06
Identities = 29/53 (54%), Positives = 36/53 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A TA+DFPKT KLV M KPK+Y +FM K+ QSY KK L +LYR +
Sbjct: 992 AELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEHHQSYKSKKILGRLYRQI 1044
>ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer
arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X3 [Cicer
arietinum]
Length = 1201
Score = 63.2 bits (152), Expect(2) = 3e-12
Identities = 34/74 (45%), Positives = 43/74 (58%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A CS+YGAL K + L EL V F K KL M LK K++ +FMGK+ QSYK
Sbjct: 927 VVHADCSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEHHQSYK 986
Query: 320 LNKIMGEFYWVVGD 361
KI+G Y + D
Sbjct: 987 SKKILGRLYRQIKD 1000
Score = 36.6 bits (83), Expect(2) = 3e-12
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 67 TNRHIIDLFTKNMVNEYLGTIC 132
T R IID F KNMVNE+LG+IC
Sbjct: 902 TIRDIIDFFVKNMVNEHLGSIC 923
Score = 59.7 bits (143), Expect = 3e-06
Identities = 29/53 (54%), Positives = 36/53 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A TA+DFPKT KLV M KPK+Y +FM K+ QSY KK L +LYR +
Sbjct: 946 AELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEHHQSYKSKKILGRLYRQI 998
>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
6 [Theobroma cacao]
Length = 1197
Score = 61.6 bits (148), Expect(2) = 1e-11
Identities = 33/74 (44%), Positives = 44/74 (59%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SEYGAL K + L EL V F K K+ +M +LK K++ +FMGK+ QSYK
Sbjct: 929 VVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSMPANLKPKLYPDFMGKEEYQSYK 988
Query: 320 LNKIMGEFYWVVGD 361
KI+G Y + D
Sbjct: 989 SRKILGRLYRHIKD 1002
Score = 36.6 bits (83), Expect(2) = 1e-11
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 70 NRHIIDLFTKNMVNEYLGTIC 132
++ IID F KNMVNE+LGTIC
Sbjct: 905 HKDIIDFFAKNMVNEHLGTIC 925
Score = 61.6 bits (148), Expect = 8e-07
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTVTHLVMSN 843
A+ A TA+DFPKT K+V+M + KPK+Y +FM K+E QSY +K L +LYR + + +
Sbjct: 948 AELAATAVDFPKTGKIVSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDED 1007
Query: 842 FMEA 831
E+
Sbjct: 1008 LSES 1011
>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
Length = 1195
Score = 62.0 bits (149), Expect(2) = 1e-11
Identities = 34/74 (45%), Positives = 45/74 (60%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SEYGAL K ++L EL V F K K+ M LK +++ +FMGK+ LQSYK
Sbjct: 928 VVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPDLKPQMYPDFMGKEELQSYK 987
Query: 320 LNKIMGEFYWVVGD 361
KI+G+ Y V D
Sbjct: 988 STKILGKLYRRVRD 1001
Score = 36.2 bits (82), Expect(2) = 1e-11
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 67 TNRHIIDLFTKNMVNEYLGTIC 132
T+ II+ FTKNMVNE LGTIC
Sbjct: 903 THSDIIEFFTKNMVNESLGTIC 924
Score = 59.3 bits (142), Expect(2) = 9e-08
Identities = 29/53 (54%), Positives = 36/53 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A A+DFPKT K+V M KP++Y +FM K+ELQSY K L KLYR V
Sbjct: 947 AELAAIAVDFPKTGKIVTMPPDLKPQMYPDFMGKEELQSYKSTKILGKLYRRV 999
Score = 25.4 bits (54), Expect(2) = 9e-08
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 1114 NERVTRYQNDHVVHTYFKKYRAWHNKCI 1031
NE + N HVVH +Y A KCI
Sbjct: 917 NESLGTICNAHVVHADLSEYGALDEKCI 944
>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 62.4 bits (150), Expect(3) = 3e-11
Identities = 36/82 (43%), Positives = 47/82 (57%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SE+GAL K ++L EL V F K KL M LK K++ +FMGK+ QSYK
Sbjct: 929 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYK 988
Query: 320 LNKIMGEFYWVVGDYLKAYGGI 385
KI+G+ Y V D A G +
Sbjct: 989 SKKILGKLYRQVKDVCDAEGEV 1010
Score = 31.2 bits (69), Expect(3) = 3e-11
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 37 KISLIGRFVGTNRHIIDLFTKNMVNEYLGTIC 132
++ +GR V + IID F+KNMV E LG IC
Sbjct: 895 EVKQLGRQVN-HMDIIDFFSKNMVQESLGEIC 925
Score = 22.3 bits (46), Expect(3) = 3e-11
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 487 GQLYYVFGRRRVNREKS--DGDFSTIPF*V*SLETTTMEGGQTKNS-----NGLMQEFKR 645
GQL+ + G+ +VNRE+ G ++P + + + G+ K N L +EF+
Sbjct: 1048 GQLHGLLGQYKVNREEEVVTGHIWSMP------KYSAKKQGELKERLKHAYNTLRKEFRN 1101
Query: 646 IF 651
+F
Sbjct: 1102 VF 1103
Score = 61.6 bits (148), Expect(2) = 2e-07
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A A+DFPKT KLV M KPK+Y +FM K+E QSY KK L KLYR V
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQV 1000
Score = 21.6 bits (44), Expect(2) = 2e-07
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 1090 NDHVVHTYFKKYRAWHNKCI 1031
N HVVH ++ A KC+
Sbjct: 926 NAHVVHADLSEFGALDEKCL 945
>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 62.4 bits (150), Expect(3) = 3e-11
Identities = 36/82 (43%), Positives = 47/82 (57%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SE+GAL K ++L EL V F K KL M LK K++ +FMGK+ QSYK
Sbjct: 929 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYK 988
Query: 320 LNKIMGEFYWVVGDYLKAYGGI 385
KI+G+ Y V D A G +
Sbjct: 989 SKKILGKLYRQVKDVCDAEGEV 1010
Score = 31.2 bits (69), Expect(3) = 3e-11
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 37 KISLIGRFVGTNRHIIDLFTKNMVNEYLGTIC 132
++ +GR V + IID F+KNMV E LG IC
Sbjct: 895 EVKQLGRQVN-HMDIIDFFSKNMVQESLGEIC 925
Score = 22.3 bits (46), Expect(3) = 3e-11
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 487 GQLYYVFGRRRVNREKS--DGDFSTIPF*V*SLETTTMEGGQTKNS-----NGLMQEFKR 645
GQL+ + G+ +VNRE+ G ++P + + + G+ K N L +EF+
Sbjct: 1048 GQLHGLLGQYKVNREEEVVTGHIWSMP------KYSAKKQGELKERLKHAYNTLRKEFRN 1101
Query: 646 IF 651
+F
Sbjct: 1102 VF 1103
Score = 61.6 bits (148), Expect(2) = 2e-07
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A A+DFPKT KLV M KPK+Y +FM K+E QSY KK L KLYR V
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQV 1000
Score = 21.6 bits (44), Expect(2) = 2e-07
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 1090 NDHVVHTYFKKYRAWHNKCI 1031
N HVVH ++ A KC+
Sbjct: 926 NAHVVHADLSEFGALDEKCL 945
>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 60.8 bits (146), Expect(3) = 5e-11
Identities = 35/82 (42%), Positives = 46/82 (56%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SE+GAL K ++L EL V F K KL M LK K++ +FMGK+ QSYK
Sbjct: 929 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYK 988
Query: 320 LNKIMGEFYWVVGDYLKAYGGI 385
KI+G+ Y V D G +
Sbjct: 989 SKKILGKLYRQVKDVCDTEGEV 1010
Score = 31.2 bits (69), Expect(3) = 5e-11
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 37 KISLIGRFVGTNRHIIDLFTKNMVNEYLGTIC 132
++ +GR V + IID F+KNMV E LG IC
Sbjct: 895 EVKQLGRQVN-HMDIIDFFSKNMVQESLGEIC 925
Score = 23.1 bits (48), Expect(3) = 5e-11
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +1
Query: 487 GQLYYVFGRRRVNREKSDGDFSTIPF*V*SLETTTMEGGQTKNSNGLMQEFKRIFGMLRR 666
GQL+ + G+ +VNRE+ V + +M K L + K + MLR+
Sbjct: 1048 GQLHGLLGQYKVNREEE----------VVTGHIWSMPKYSAKKQGELKERLKHAYNMLRK 1097
Query: 667 NLSSL 681
++
Sbjct: 1098 EFRNV 1102
Score = 61.6 bits (148), Expect(2) = 2e-07
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A A+DFPKT KLV M KPK+Y +FM K+E QSY KK L KLYR V
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQV 1000
Score = 21.6 bits (44), Expect(2) = 2e-07
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 1090 NDHVVHTYFKKYRAWHNKCI 1031
N HVVH ++ A KC+
Sbjct: 926 NAHVVHADLSEFGALDEKCL 945
>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
6 [Gossypium hirsutum]
Length = 1196
Score = 58.9 bits (141), Expect(2) = 1e-10
Identities = 31/74 (41%), Positives = 43/74 (58%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V ++ SE+GA K + L EL V F K K+ +M LK K++ +FMGK+ QSYK
Sbjct: 928 VVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSMPAQLKPKLYPDFMGKEEFQSYK 987
Query: 320 LNKIMGEFYWVVGD 361
NKI+G Y + D
Sbjct: 988 SNKILGRLYRYIKD 1001
Score = 35.8 bits (81), Expect(2) = 1e-10
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +1
Query: 67 TNRHIIDLFTKNMVNEYLGTIC 132
T++ II+ F+KNMVNE+LG+IC
Sbjct: 903 THKDIIEFFSKNMVNEHLGSIC 924
Score = 58.2 bits (139), Expect = 9e-06
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A A+DFPKT K+V+M KPK+Y +FM K+E QSY K L +LYR +
Sbjct: 947 AELAAIAVDFPKTGKIVSMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYI 999
>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 60.8 bits (146), Expect(3) = 1e-10
Identities = 35/82 (42%), Positives = 46/82 (56%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SE+GAL K ++L EL V F K KL M LK K++ +FMGK+ QSYK
Sbjct: 929 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYK 988
Query: 320 LNKIMGEFYWVVGDYLKAYGGI 385
KI+G+ Y V D G +
Sbjct: 989 SKKILGKLYRQVKDVCDTEGEV 1010
Score = 30.8 bits (68), Expect(3) = 1e-10
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 37 KISLIGRFVGTNRHIIDLFTKNMVNEYLGTIC 132
++ +GR V + IID F+KNMV E LG IC
Sbjct: 895 EVKQMGRQVN-HMDIIDFFSKNMVQESLGEIC 925
Score = 22.3 bits (46), Expect(3) = 1e-10
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +1
Query: 487 GQLYYVFGRRRVNREKS--DGDFSTIPF*V*SLETTTMEGGQTKNS-----NGLMQEFKR 645
GQL+ + G+ +VNRE+ G ++P + + + G+ K N L +EF+
Sbjct: 1048 GQLHGLLGQYKVNREEEVVTGHIWSMP------KYSAKKQGELKERLKHAYNTLRKEFRN 1101
Query: 646 IF 651
+F
Sbjct: 1102 VF 1103
Score = 61.6 bits (148), Expect(2) = 2e-07
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A A+DFPKT KLV M KPK+Y +FM K+E QSY KK L KLYR V
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQV 1000
Score = 21.6 bits (44), Expect(2) = 2e-07
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 1090 NDHVVHTYFKKYRAWHNKCI 1031
N HVVH ++ A KC+
Sbjct: 926 NAHVVHADLSEFGALDEKCL 945
>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 62.4 bits (150), Expect(2) = 2e-10
Identities = 36/82 (43%), Positives = 47/82 (57%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SE+GAL K ++L EL V F K KL M LK K++ +FMGK+ QSYK
Sbjct: 929 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYK 988
Query: 320 LNKIMGEFYWVVGDYLKAYGGI 385
KI+G+ Y V D A G +
Sbjct: 989 SKKILGKLYRQVKDVCDAEGEV 1010
Score = 31.2 bits (69), Expect(2) = 2e-10
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 37 KISLIGRFVGTNRHIIDLFTKNMVNEYLGTIC 132
++ +GR V + IID F+KNMV E LG IC
Sbjct: 895 EVKQLGRQVN-HMDIIDFFSKNMVQESLGEIC 925
Score = 61.6 bits (148), Expect(2) = 2e-07
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A A+DFPKT KLV M KPK+Y +FM K+E QSY KK L KLYR V
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQV 1000
Score = 21.6 bits (44), Expect(2) = 2e-07
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 1090 NDHVVHTYFKKYRAWHNKCI 1031
N HVVH ++ A KC+
Sbjct: 926 NAHVVHADLSEFGALDEKCL 945
>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 62.4 bits (150), Expect(2) = 2e-10
Identities = 36/82 (43%), Positives = 47/82 (57%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SE+GAL K ++L EL V F K KL M LK K++ +FMGK+ QSYK
Sbjct: 929 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYK 988
Query: 320 LNKIMGEFYWVVGDYLKAYGGI 385
KI+G+ Y V D A G +
Sbjct: 989 SKKILGKLYRQVKDVCDAEGEV 1010
Score = 31.2 bits (69), Expect(2) = 2e-10
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 37 KISLIGRFVGTNRHIIDLFTKNMVNEYLGTIC 132
++ +GR V + IID F+KNMV E LG IC
Sbjct: 895 EVKQLGRQVN-HMDIIDFFSKNMVQESLGEIC 925
Score = 61.6 bits (148), Expect(2) = 2e-07
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A A+DFPKT KLV M KPK+Y +FM K+E QSY KK L KLYR V
Sbjct: 948 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQV 1000
Score = 21.6 bits (44), Expect(2) = 2e-07
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 1090 NDHVVHTYFKKYRAWHNKCI 1031
N HVVH ++ A KC+
Sbjct: 926 NAHVVHADLSEFGALDEKCL 945
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 60.5 bits (145), Expect(2) = 3e-10
Identities = 34/74 (45%), Positives = 42/74 (56%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SEYGAL ++L EL V F K KL M LK K++ +FMGK+ QSY
Sbjct: 929 VVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYN 988
Query: 320 LNKIMGEFYWVVGD 361
NKI+G Y V D
Sbjct: 989 SNKILGRLYRQVKD 1002
Score = 32.7 bits (73), Expect(2) = 3e-10
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 70 NRHIIDLFTKNMVNEYLGTIC 132
++ IID F KNMVNE LG IC
Sbjct: 905 HQDIIDFFAKNMVNENLGAIC 925
Score = 62.0 bits (149), Expect(2) = 4e-08
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A TA+DFPKT KLV M KPK+Y +FM K++ QSYN K L +LYR V
Sbjct: 948 AELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQV 1000
Score = 23.9 bits (50), Expect(2) = 4e-08
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 1114 NERVTRYQNDHVVHTYFKKYRAWHNKCI 1031
NE + N HVVH +Y A CI
Sbjct: 918 NENLGAICNAHVVHADLSEYGALDENCI 945
>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
Length = 1196
Score = 60.5 bits (145), Expect(2) = 3e-10
Identities = 32/74 (43%), Positives = 44/74 (59%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SEYGAL K ++L EL V F K K+ M LK K++ +FMGK Q+YK
Sbjct: 930 VVHADSSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPAELKPKLYPDFMGKDEFQTYK 989
Query: 320 LNKIMGEFYWVVGD 361
+KI+G+ Y + D
Sbjct: 990 SSKILGKLYRKIKD 1003
Score = 32.7 bits (73), Expect(2) = 3e-10
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 79 IIDLFTKNMVNEYLGTIC 132
II+ FTKNMVNE LG IC
Sbjct: 909 IIEFFTKNMVNESLGAIC 926
Score = 57.4 bits (137), Expect(2) = 5e-07
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A A+DFPKT K+V M KPK+Y +FM K E Q+Y K L KLYR +
Sbjct: 949 AELAAIAVDFPKTGKIVTMPAELKPKLYPDFMGKDEFQTYKSSKILGKLYRKI 1001
Score = 24.6 bits (52), Expect(2) = 5e-07
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 1114 NERVTRYQNDHVVHTYFKKYRAWHNKCI 1031
NE + N HVVH +Y A KCI
Sbjct: 919 NESLGAICNAHVVHADSSEYGALDEKCI 946
>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
max] gi|571449461|ref|XP_006578148.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
max]
Length = 1204
Score = 60.1 bits (144), Expect(2) = 4e-10
Identities = 33/74 (44%), Positives = 43/74 (58%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A S+YGAL K + L EL V F K KL M LK K++ +FMGK+ QSY+
Sbjct: 928 VVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKERHQSYR 987
Query: 320 LNKIMGEFYWVVGD 361
NKI+G Y + D
Sbjct: 988 SNKILGRLYRHIKD 1001
Score = 32.7 bits (73), Expect(2) = 4e-10
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 73 RHIIDLFTKNMVNEYLGTIC 132
R II+ F +NMVNE+LG IC
Sbjct: 905 RDIIEFFVRNMVNEHLGAIC 924
>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
sinensis]
Length = 1197
Score = 59.7 bits (143), Expect(2) = 6e-10
Identities = 32/69 (46%), Positives = 40/69 (57%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SEYGAL + L EL V F K K+ M LK K++ +FMGK+ QSYK
Sbjct: 929 VVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYK 988
Query: 320 LNKIMGEFY 346
NKI+G Y
Sbjct: 989 SNKILGRLY 997
Score = 32.3 bits (72), Expect(2) = 6e-10
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +1
Query: 73 RHIIDLFTKNMVNEYLGTIC 132
R II+ F K+MVNE LGTIC
Sbjct: 906 RDIIEFFAKHMVNENLGTIC 925
Score = 56.6 bits (135), Expect(2) = 2e-06
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYR 870
A+ A TA+DFPKT K+V M KPK+Y +FM K+ QSY K L +LYR
Sbjct: 948 AELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYR 998
Score = 23.5 bits (49), Expect(2) = 2e-06
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 1114 NERVTRYQNDHVVHTYFKKYRAWHNKCI 1031
NE + N HVVH +Y A CI
Sbjct: 918 NENLGTICNAHVVHADHSEYGALDENCI 945
>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
sinensis]
Length = 1025
Score = 59.7 bits (143), Expect(2) = 6e-10
Identities = 32/69 (46%), Positives = 40/69 (57%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SEYGAL + L EL V F K K+ M LK K++ +FMGK+ QSYK
Sbjct: 929 VVHADHSEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYK 988
Query: 320 LNKIMGEFY 346
NKI+G Y
Sbjct: 989 SNKILGRLY 997
Score = 32.3 bits (72), Expect(2) = 6e-10
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +1
Query: 73 RHIIDLFTKNMVNEYLGTIC 132
R II+ F K+MVNE LGTIC
Sbjct: 906 RDIIEFFAKHMVNENLGTIC 925
Score = 56.6 bits (135), Expect(2) = 2e-06
Identities = 27/51 (52%), Positives = 34/51 (66%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYR 870
A+ A TA+DFPKT K+V M KPK+Y +FM K+ QSY K L +LYR
Sbjct: 948 AELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYR 998
Score = 23.5 bits (49), Expect(2) = 2e-06
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 1114 NERVTRYQNDHVVHTYFKKYRAWHNKCI 1031
NE + N HVVH +Y A CI
Sbjct: 918 NENLGTICNAHVVHADHSEYGALDENCI 945
>ref|XP_007137030.1| hypothetical protein PHAVU_009G093700g [Phaseolus vulgaris]
gi|561010117|gb|ESW09024.1| hypothetical protein
PHAVU_009G093700g [Phaseolus vulgaris]
Length = 1204
Score = 55.1 bits (131), Expect(2) = 1e-09
Identities = 30/74 (40%), Positives = 41/74 (55%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A S+Y AL K + L EL V F K KL M LK K++ +FMGK+ QSY+
Sbjct: 928 VVHADSSDYDALDEKCIHLAELAATAVDFPKTGKLVTMPYHLKPKLYPDFMGKEKHQSYR 987
Query: 320 LNKIMGEFYWVVGD 361
K++G Y + D
Sbjct: 988 SKKVLGRLYRRIKD 1001
Score = 36.2 bits (82), Expect(2) = 1e-09
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 67 TNRHIIDLFTKNMVNEYLGTIC 132
T R IID F +NMVNE+LG IC
Sbjct: 903 TTRDIIDFFVRNMVNEHLGAIC 924
Score = 60.5 bits (145), Expect = 2e-06
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A TA+DFPKT KLV M KPK+Y +FM K++ QSY KK L +LYR +
Sbjct: 947 AELAATAVDFPKTGKLVTMPYHLKPKLYPDFMGKEKHQSYRSKKVLGRLYRRI 999
>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
Length = 1194
Score = 57.4 bits (137), Expect(2) = 1e-09
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A S+YGAL K + L EL V F K + M LK K++ +FMGK+ QSYK
Sbjct: 925 VVHADLSDYGALDEKCLSLAELAAIAVDFPKTGIIVTMPAHLKPKIYPDFMGKEEYQSYK 984
Query: 320 LNKIMGEFYWVVGD 361
KIMG Y + D
Sbjct: 985 STKIMGRLYRQIKD 998
Score = 33.9 bits (76), Expect(2) = 1e-09
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 67 TNRHIIDLFTKNMVNEYLGTIC 132
T + IID F++NMVNE LG IC
Sbjct: 900 TQKDIIDFFSRNMVNESLGAIC 921
Score = 55.5 bits (132), Expect(2) = 3e-06
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTVTHLVMSN 843
A+ A A+DFPKT +V M KPK+Y +FM K+E QSY K + +LYR + +
Sbjct: 944 AELAAIAVDFPKTGIIVTMPAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDD 1003
Query: 842 FMEALVQHLLLTLYPTSTCIQVHG 771
+ +++ + P T ++V G
Sbjct: 1004 VSPSSELNIVSSNIPFDTDLEVPG 1027
Score = 23.9 bits (50), Expect(2) = 3e-06
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 1114 NERVTRYQNDHVVHTYFKKYRAWHNKCI 1031
NE + N HVVH Y A KC+
Sbjct: 914 NESLGAICNAHVVHADLSDYGALDEKCL 941
>ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1188
Score = 58.5 bits (140), Expect(2) = 1e-09
Identities = 33/74 (44%), Positives = 42/74 (56%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A S+YGAL V L EL V F K KL M +LK K++ +FMGK+ QSYK
Sbjct: 914 VVHADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSYK 973
Query: 320 LNKIMGEFYWVVGD 361
KI+G Y + D
Sbjct: 974 SKKILGRLYRRIKD 987
Score = 32.7 bits (73), Expect(2) = 1e-09
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 67 TNRHIIDLFTKNMVNEYLGTIC 132
T + IID F +NMVNE LG+IC
Sbjct: 889 TVQDIIDFFVRNMVNEQLGSIC 910
Score = 60.8 bits (146), Expect = 1e-06
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A TA+DFPKT KLV M + KPK+Y +FM K+ QSY KK L +LYR +
Sbjct: 933 AELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQSYKSKKILGRLYRRI 985
>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
tuberosum]
Length = 1198
Score = 60.8 bits (146), Expect(2) = 1e-09
Identities = 35/81 (43%), Positives = 47/81 (58%)
Frame = +2
Query: 140 VAYAHCSEYGALYWKGVQLVELGTATVVFSKIDKLANMLQSLKHKVFLNFMGKQVLQSYK 319
V +A SE+GAL K ++L EL V F K KL M LK K++ +FMGK+ Q+Y+
Sbjct: 930 VVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQTYE 989
Query: 320 LNKIMGEFYWVVGDYLKAYGG 382
KI+G+ Y V D A GG
Sbjct: 990 SKKILGKLYRQVIDVYDAEGG 1010
Score = 30.0 bits (66), Expect(2) = 1e-09
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1
Query: 79 IIDLFTKNMVNEYLGTIC 132
IID F+KNMV E LG IC
Sbjct: 909 IIDFFSKNMVQESLGEIC 926
Score = 58.2 bits (139), Expect(2) = 3e-06
Identities = 29/53 (54%), Positives = 35/53 (66%)
Frame = -1
Query: 1022 AKFATTAIDFPKTDKLVNMLQSFKPKVYSNFMRKQELQSYN*KKTLPKLYRTV 864
A+ A A+DFPKT KLV M KPK+Y +FM K+ Q+Y KK L KLYR V
Sbjct: 949 AELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQV 1001
Score = 21.6 bits (44), Expect(2) = 3e-06
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 1090 NDHVVHTYFKKYRAWHNKCI 1031
N HVVH ++ A KC+
Sbjct: 927 NAHVVHADLSEFGALDEKCL 946