BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00010953
         (1997 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   725   0.0  
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   724   0.0  
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   723   0.0  
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   719   0.0  
ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao] g...   706   0.0  
ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prun...   692   0.0  
ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Popu...   692   0.0  
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   688   0.0  
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      683   0.0  
ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr...   681   0.0  
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   675   0.0  
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              673   0.0  
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   671   0.0  
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-...   669   0.0  
ref|XP_007131471.1| hypothetical protein PHAVU_011G016400g [Phas...   666   0.0  
ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [A...   666   0.0  
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-...   665   0.0  
ref|XP_004307835.1| PREDICTED: RNA polymerase sigma factor sigA-...   662   0.0  
ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Caps...   659   0.0  
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      657   0.0  

>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  725 bits (1872), Expect = 0.0
 Identities = 380/508 (74%), Positives = 429/508 (84%), Gaps = 4/508 (0%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGT 467
            MM TAAVIGLSAGKRLLSS+FYYSD++EK   I+DLG    Q  STKNV+ AKKSS++  
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 468  SYPS-NQHPQSIKALKEYVDTSSAAIADAWLESSDFTEEGGFDIESSVEALLLLQRSMLE 644
            S+PS N+  Q IKALKE+VDT+ A+ A+ W E  +  EE   +++ SVEALLLLQ+SMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 645  KQWNLSFEQRG-TRTPAEKNLKKIMITSSGVSARQRRLNTRNKAFHLNPT--PQSRRKQL 815
            KQWNLSFE+   T +P++K  KK+ +T SGVSARQRRLN++ K    N +   Q+  KQL
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVPQQNGSKQL 180

Query: 816  XXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNPT 995
                  +L+QN LKGYVKGV+SEELLTHAEVVRLSKKIK GLSLDDHK RLK RLG  P+
Sbjct: 181  RSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240

Query: 996  DEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGLI 1175
             E+LA SL +S  ELQS L+E SLAREKL MSNVRLV+SIAQ+YDNMGA+MADLVQGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLI 300

Query: 1176 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRL 1355
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRNAKLRL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 1356 EEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADNR 1535
            EE+G+TPS+ +IAE LNMSQKKVRNATEAI KVFSLDREAFPSLNGLPGET HSYIADNR
Sbjct: 361  EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 1536 LENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRER 1715
            +ENNPWHGVD+W LKDEVN LI  TLG RE++IIRLYYGLDKECLTWEDIS+RIGLSRER
Sbjct: 421  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480

Query: 1716 VRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            VRQVGLVALEKLKHAARK+K+EAMLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  724 bits (1868), Expect = 0.0
 Identities = 378/508 (74%), Positives = 429/508 (84%), Gaps = 4/508 (0%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGT 467
            MM TAAVIGLSAGKRLLSS+FYYSD++EK   I+DLG    Q  STKNV+ AKKSS++  
Sbjct: 1    MMATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLGSANSQVGSTKNVVAAKKSSNYNP 60

Query: 468  SYPS-NQHPQSIKALKEYVDTSSAAIADAWLESSDFTEEGGFDIESSVEALLLLQRSMLE 644
            S+PS N+  Q IKALKE+VDT+ A+ A+ W E  +  EE   +++ SVEALLLLQ+SMLE
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSIEEESSELDYSVEALLLLQKSMLE 120

Query: 645  KQWNLSFEQRG-TRTPAEKNLKKIMITSSGVSARQRRLNTRNKAFHLNPT--PQSRRKQL 815
            KQWNLSFE+   T +P++K  KK+ +T SGVSARQRRLN++ K    N +   Q+  KQL
Sbjct: 121  KQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILSQNKSVLQQNGSKQL 180

Query: 816  XXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNPT 995
                  +L+QN LKGYVKGV+SEELLTHAEVVRLSKKIK GLSLDDHK RLK RLG  P+
Sbjct: 181  RSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPS 240

Query: 996  DEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGLI 1175
             E+LA SL +S  ELQS L+E SLAREKL MSNVRLV+SIAQ+YDNMGA+MADL+QGGLI
Sbjct: 241  MEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLIQGGLI 300

Query: 1176 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRL 1355
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRNAKLRL
Sbjct: 301  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRL 360

Query: 1356 EEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADNR 1535
            EE+G+TP++ +IAE LNMSQKKVRNATEAI KVFSLDREAFPSLNGLPGET HSYIADNR
Sbjct: 361  EEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 1536 LENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRER 1715
            +ENNPWHGVD+W LKDEVN LI  TLG RE++IIRLYYGLDKECLTWEDIS+RIGLSRER
Sbjct: 421  VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRER 480

Query: 1716 VRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            VRQVGLVALEKLKHAARK+K+EAMLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  723 bits (1865), Expect = 0.0
 Identities = 386/508 (75%), Positives = 437/508 (86%), Gaps = 5/508 (0%)
 Frame = +3

Query: 291  MGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGTS 470
            M TAAVIGLSAGKRLLSS FYYSDLTEKL S ++ GLT YQ  STK +I+AKKSS++G S
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 471  YPS-NQHPQSIKALKEYVDTSSA-AIADAWLESSDFTEEGGFDIESSVEALLLLQRSMLE 644
            +PS N++ QSIKALKE+VDT+SA + A    ++ +  EE   D++ SVEALLLLQ+SMLE
Sbjct: 61   FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120

Query: 645  KQWNLSFEQRGTR-TPAEKNLKKIMITSSGVSARQRRLNTRNKAFHLNP-TPQSRR-KQL 815
            KQWNLSFE+  +  +P+ K+ KKI +T SGVSARQRR+N R K    +  T Q+   KQL
Sbjct: 121  KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180

Query: 816  XXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNPT 995
                  +LLQNRLKGYVKGV+SEELL+HAEVVRLS+ IKAGLSL+DHKSRLK RLG +P+
Sbjct: 181  KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240

Query: 996  DEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGLI 1175
            DE++ATSL +S AELQSK +  SLAREKLAMSNVRLV+SIAQ+YDNMGAEMADLVQGGLI
Sbjct: 241  DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 1176 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRL 1355
            GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLP HLHERL LIRNAK+RL
Sbjct: 301  GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360

Query: 1356 EEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADNR 1535
            EE+G+TPSI +IAESLN+SQKKVRNATEA+SKVFSLDREAFPSLNGLPGET HSYIADN 
Sbjct: 361  EEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNC 420

Query: 1536 LENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRER 1715
            LENNPWHGVD+W LKDEVN LIN TL  REQ+IIRLYYGLD E LTWEDIS+RIGLSRER
Sbjct: 421  LENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRER 480

Query: 1716 VRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            VRQVGLVALEKLKHAARK+KLEAMLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKLEAMLVKH 508


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
            1 family protein [Populus trichocarpa]
          Length = 509

 Score =  719 bits (1855), Expect = 0.0
 Identities = 379/509 (74%), Positives = 438/509 (86%), Gaps = 5/509 (0%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGT 467
            MM TAAVIGLS+GKRLLSS+FYYSDLTEKL +++D G+T Y TA+TKNVI+AKKSS++G 
Sbjct: 1    MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60

Query: 468  SYPS-NQHPQSIKALKEYVDTSSAAIADA-WLESSDFTEEGGFDIESSVEALLLLQRSML 641
            S+PS N++  SIKALKE+VDT+SA+   A W ++ D  EE    ++ SVEALLLLQ+SML
Sbjct: 61   SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 642  EKQWNLSFEQRGTR-TPAEKNLKKIMITSSGVSARQRRLNTRNKAFHLNP--TPQSRRKQ 812
            EKQWNLSFE+  +  + ++KN KKI +T SGVSARQRR+N R K  + +   +  S  K 
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 813  LXXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNP 992
            L      DLLQNRLKGYVKGV+S+E+L H EVVRLS+ I+AGLS +DHKSRLK RLG  P
Sbjct: 181  LRSVSSPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP 240

Query: 993  TDEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGL 1172
            +DE++A SL +S A+LQSKL++ SLAREKLAMSNVRLV+SIAQKYDNMGAEMADLVQGGL
Sbjct: 241  SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL 300

Query: 1173 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLR 1352
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV+NSRTLRLP HLHERL LIRNAK+R
Sbjct: 301  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR 360

Query: 1353 LEEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADN 1532
            LEE+G+TPSI +IAESLNMSQ+KVRNATEAISKVFSLDREAFPSLNGLPGET HSYIADN
Sbjct: 361  LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 1533 RLENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRE 1712
            R ENNPWHGVDEW LK+EVN LI+STL  RE++IIRLY+GLD+ECLTWEDIS+R+GLSRE
Sbjct: 421  RPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRE 480

Query: 1713 RVRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            RVRQVGLVALEKLKHAARKR  EAMLVKH
Sbjct: 481  RVRQVGLVALEKLKHAARKRNTEAMLVKH 509


>ref|XP_007029766.1| Sigma factor A isoform 1 [Theobroma cacao]
            gi|508718371|gb|EOY10268.1| Sigma factor A isoform 1
            [Theobroma cacao]
          Length = 508

 Score =  706 bits (1821), Expect = 0.0
 Identities = 373/508 (73%), Positives = 432/508 (85%), Gaps = 4/508 (0%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGT 467
            MM TAAVIGL+ GKRLLSS+F YSD+ EKL   +D G + +QT+STK++I+AKKSS+   
Sbjct: 1    MMATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTSSTKSLIVAKKSSNCSQ 60

Query: 468  SYPS-NQHPQSIKALKEYVDTSS-AAIADAWLESSDFTEEGGFDIESSVEALLLLQRSML 641
            S PS N+  QSIKALKE+VD++S  + A+   + S+  E   +D++ SVEALLLLQ+SML
Sbjct: 61   SLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSML 120

Query: 642  EKQWNLSFEQRG-TRTPAEKNLKKIMITSSGVSARQRRLNTRNKAFHLNPTP-QSRRKQL 815
            EKQW LSFE+   T +P+ K  KKI +T SGVSARQRR NT+ K    N +  Q   KQL
Sbjct: 121  EKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKILIQNKSIIQPNAKQL 180

Query: 816  XXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNPT 995
                  +LLQ+RLKGYVKGV+S+ELL+HAEVVRLSKKIKAGLSL++H+ RLK RLG  P+
Sbjct: 181  RSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKERLGCEPS 240

Query: 996  DEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGLI 1175
            DE+LATSL +S AEL+SKL+E SLAREKLAMSNVRLV+SIAQ+YDNMGAEM+DL+QGGLI
Sbjct: 241  DEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSDLIQGGLI 300

Query: 1176 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRL 1355
            GLLRGIEKFDSSKG+KISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL LIRNAK+RL
Sbjct: 301  GLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKIRL 360

Query: 1356 EEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADNR 1535
            EE+GITP+I +IAESLNMSQKKVRNATEA+SKVFSLDR+AFPSLNGLPGET HSYIADN 
Sbjct: 361  EEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADNH 420

Query: 1536 LENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRER 1715
            +EN PWHGVDEW LKDEVN LI  TLG RE++IIRLYYGLDKE LTWEDIS+RIGLSRER
Sbjct: 421  VENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWEDISKRIGLSRER 480

Query: 1716 VRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            VRQVGLVALEKLKHAARK+K+EAMLVKH
Sbjct: 481  VRQVGLVALEKLKHAARKKKMEAMLVKH 508


>ref|XP_007219023.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
            gi|462415485|gb|EMJ20222.1| hypothetical protein
            PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  692 bits (1787), Expect = 0.0
 Identities = 367/512 (71%), Positives = 425/512 (83%), Gaps = 8/512 (1%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDL-GLTQYQTASTKNVIIAKKSSSFG 464
            MM TAAVIGLS GKRLL+S+FYYSD+TEKL  ++D  G      +STKNV+ A+K S+  
Sbjct: 1    MMATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCS 60

Query: 465  TSYPSNQHPQ-SIKALKEYVDTSSA--AIADAWLESSDFTEEGGFDIESSVEALLLLQRS 635
            + +PS+  PQ SI+ALKE+V T+SA  +    W +  +  EE   D+E SVEALLLLQ+S
Sbjct: 61   SRFPSSNRPQQSIRALKEHVQTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKS 120

Query: 636  MLEKQWNLSFEQRGTRTPAEKNL-KKIMITSSGVSARQRRL-NTRNKAFHLNPTPQ--SR 803
            MLEKQWNLSFE++  R    K   KKI +T SGVSARQRR+ +T+ K F+ +      S 
Sbjct: 121  MLEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTFNKSTCVMHPST 180

Query: 804  RKQLXXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLG 983
             K L      +LLQN +KGYVKGV+SE+LLTH EVVRLSKKIK GLS+++HKSRLK RLG
Sbjct: 181  NKPLRAIVSPELLQNHVKGYVKGVLSEDLLTHTEVVRLSKKIKVGLSVEEHKSRLKERLG 240

Query: 984  YNPTDEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQ 1163
              P+DE+LATSL +S A+LQSKL+E  LAREKLAMSNVRLV+SIAQ+YDNMGAEMADL+Q
Sbjct: 241  CEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEMADLIQ 300

Query: 1164 GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNA 1343
            GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL LIRNA
Sbjct: 301  GGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA 360

Query: 1344 KLRLEEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYI 1523
            K+RLEE+GITPSI +IAESLNMS+KKVRNATEAISKVFSLDR+AFPSLNGLPGET HSYI
Sbjct: 361  KIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSYI 420

Query: 1524 ADNRLENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGL 1703
            ADNRLEN PWHGVD W LK+EV+ LIN  LG RE++II+LYYGL+ ECLTWEDIS+RIGL
Sbjct: 421  ADNRLENIPWHGVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWEDISKRIGL 480

Query: 1704 SRERVRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            SRERVRQVGLVALEKLKHAARKR++EAML+KH
Sbjct: 481  SRERVRQVGLVALEKLKHAARKREMEAMLLKH 512


>ref|XP_002319237.2| hypothetical protein POPTR_0013s07290g [Populus trichocarpa]
            gi|550325184|gb|EEE95160.2| hypothetical protein
            POPTR_0013s07290g [Populus trichocarpa]
          Length = 499

 Score =  692 bits (1785), Expect = 0.0
 Identities = 364/507 (71%), Positives = 423/507 (83%), Gaps = 3/507 (0%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGT 467
            MM TA+ IGL+ GKRLLSS+FY+SDLTEKL +++D G+  YQ  +TK+VI+AKKSS +G 
Sbjct: 1    MMATASFIGLTTGKRLLSSSFYFSDLTEKLSNVNDHGVAHYQITTTKSVIVAKKSSKYGP 60

Query: 468  SYPSN-QHPQSIKALKEYVDTSSAAIADA-WLESSDFTEEGGFDIESSVEALLLLQRSML 641
            S+PS+ ++P S KALKE +DT+SA+   A W ++ D  EE    ++ SVEAL+LLQ+SML
Sbjct: 61   SFPSSYRNPHSNKALKELIDTASASSTVATWFKTLDDFEEESSVLDYSVEALILLQKSML 120

Query: 642  EKQWNLSFEQ-RGTRTPAEKNLKKIMITSSGVSARQRRLNTRNKAFHLNPTPQSRRKQLX 818
            EKQWNLSFE    + +  +K+ KKI +T SGVSARQRRLN + K           + +  
Sbjct: 121  EKQWNLSFESINSSDSKIKKSNKKIPVTCSGVSARQRRLNNKRK--------NQNQSKFM 172

Query: 819  XXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNPTD 998
                 DLL NRLKGYVKGV+S+E+L H EVVRLS+ I+AGLSL+DHKS LK RLG  P+D
Sbjct: 173  SDISPDLLLNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSLEDHKSSLKERLGCEPSD 232

Query: 999  EELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGLIG 1178
            E+LA SL +S A+LQS+L++ SLAREKLAMSNVRLV+SIAQK DNMGAEMADLVQ GLIG
Sbjct: 233  EQLADSLRISRADLQSQLIQCSLAREKLAMSNVRLVMSIAQKNDNMGAEMADLVQAGLIG 292

Query: 1179 LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRLE 1358
            LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVEN RTLRLP HLHERL LIRNAK+RLE
Sbjct: 293  LLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENPRTLRLPNHLHERLGLIRNAKIRLE 352

Query: 1359 EQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADNRL 1538
            E+G+TPSI +IAESLNMSQ+KVRNATEAISKVFSLDREAFPSLNGLPGET HSYIADNRL
Sbjct: 353  EKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRL 412

Query: 1539 ENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRERV 1718
            ENNPWHGVDEW LK+EVN LI+S L  RE++IIRLY+GLDKECLTWEDIS+R+GLSRERV
Sbjct: 413  ENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLYHGLDKECLTWEDISKRMGLSRERV 472

Query: 1719 RQVGLVALEKLKHAARKRKLEAMLVKH 1799
            RQVGLVALEKLKHAARK KLEAMLVKH
Sbjct: 473  RQVGLVALEKLKHAARKGKLEAMLVKH 499


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
            gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
            polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  688 bits (1775), Expect = 0.0
 Identities = 360/509 (70%), Positives = 431/509 (84%), Gaps = 5/509 (0%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGT 467
            MM TAA+IGL A KRLL+S+ YYSD TEK+L  +D  L Q Q +S+K+V+IAK S++F  
Sbjct: 1    MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60

Query: 468  SYPS-NQHPQS-IKALKEYVDTSSAAIADAWLESSDFTEEGGFDIESSVEALLLLQRSML 641
             YPS N+H Q  IKA+KE+V+T S+ IA+ W  ++ + +E   +++ +VEALLLLQ+SML
Sbjct: 61   RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWHNTTSWEDEET-ELKYTVEALLLLQKSML 119

Query: 642  EKQWNLSFEQR-GTRTPAEKNLKKIMITSSGVSARQRRLNTRNK--AFHLNPTPQSRRKQ 812
            EKQW+LSFEQ   T TP EK LKK+ +T SGVSARQRR++++ K  + H+        KQ
Sbjct: 120  EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 179

Query: 813  LXXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNP 992
            L      +LLQNRLKGYVKG++SEELL+HAEVVRLSKKIK GL+L++ K+RLK RLG  P
Sbjct: 180  LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEP 239

Query: 993  TDEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGL 1172
            ++++LA SL +S AEL+S+++ESSLAREKLAMSNVRLV+SIAQ+YDNMGAEMADLVQGGL
Sbjct: 240  SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 299

Query: 1173 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLR 1352
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL LIRNAK++
Sbjct: 300  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 359

Query: 1353 LEEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADN 1532
            L+E+GITPS+ +IAESLNMS+KKV+NATEAISKVFSLDREAFPSLNGLPGET HSYIADN
Sbjct: 360  LQEKGITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 419

Query: 1533 RLENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRE 1712
             LENNPWHG D W+LK EVN LIN TLG RE++IIRLY+GLD ECLTWE+IS+RIGLSRE
Sbjct: 420  CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 479

Query: 1713 RVRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            RVRQVGLVALEKLK AA+ RK+EAML+KH
Sbjct: 480  RVRQVGLVALEKLKKAAKTRKMEAMLLKH 508


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  683 bits (1762), Expect = 0.0
 Identities = 362/507 (71%), Positives = 414/507 (81%), Gaps = 4/507 (0%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGT 467
            MM TAAVIGLSAGKRLLSS+FYYSDL EKL    D  L  +   S KNVI AKKSS +  
Sbjct: 1    MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60

Query: 468  SYPSNQHPQSIKALKEYVD-TSSAAIADAWLESSDFTEEGGFDIESSVEALLLLQRSMLE 644
            S  S++  QS K+LKE+VD T+  +   +W E  +  +    D + SVE LLLLQ+SMLE
Sbjct: 61   SCVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLE 120

Query: 645  KQWNLSFEQRGTRTPA-EKNLKKIMITSSGVSARQRRLNTRNKAF--HLNPTPQSRRKQL 815
            KQWNLS EQ  T +P  EK  KK+ IT SG SAR+RR+++R +    H + TP S  K L
Sbjct: 121  KQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPL 180

Query: 816  XXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNPT 995
                  +LLQNRLKGYVKGV+SEELLTHAEV++LSKKI+ GL L++ KSRLK RLG  P+
Sbjct: 181  RSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPS 240

Query: 996  DEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGLI 1175
            D++LA SL MS  +LQS L+E SLARE+LAMSNVRLV+SIAQ+YDN+GAEMADLVQGGLI
Sbjct: 241  DDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLI 300

Query: 1176 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRL 1355
            GLLRGIEKFD SKG+KISTYVYWWIRQGVSRALVENSRTLRLPT+LHERLSLIRNAK RL
Sbjct: 301  GLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARL 360

Query: 1356 EEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADNR 1535
            EE+GITPS+  IA SLNMSQKKVRNATEA SK++SLDREAFPSLNGLPGETLHSYIADN 
Sbjct: 361  EEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNH 420

Query: 1536 LENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRER 1715
            LENNPWHGVD W LKDEVN+LI+STL  RE++IIRLYYGLD ECLTWEDIS+RIGLSRER
Sbjct: 421  LENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGLSRER 480

Query: 1716 VRQVGLVALEKLKHAARKRKLEAMLVK 1796
            VRQVGLVALEKLKHAARKR+L+AML+K
Sbjct: 481  VRQVGLVALEKLKHAARKRQLDAMLIK 507


>ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum]
            gi|557097090|gb|ESQ37598.1| hypothetical protein
            EUTSA_v10002486mg [Eutrema salsugineum]
          Length = 519

 Score =  681 bits (1757), Expect = 0.0
 Identities = 364/519 (70%), Positives = 430/519 (82%), Gaps = 15/519 (2%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGT 467
            MM TAAVIGL+AGKRLLSS+FYYSD+TEK LS++D   +QY  AST++ I AKK+ S  +
Sbjct: 1    MMATAAVIGLNAGKRLLSSSFYYSDVTEKFLSVNDHCSSQYHIASTRSGITAKKTPSSSS 60

Query: 468  SYP-----SNQHPQSIKALKEYVDTSSAAIADAWLESSDFTEEGGF---DIESSVEALLL 623
            +Y      S++H QS KALKE VD  ++++       SD   EG     D+  SVEALLL
Sbjct: 61   NYSPSLPSSSRHTQSAKALKETVDVVASSVQPWLPPGSDKEMEGESYEDDLGHSVEALLL 120

Query: 624  LQRSMLEKQWNLSFEQRGT-RTPAEKNL--KKIMITSSGVSARQRRLNTRNKA--FHLNP 788
            LQ+SMLEKQWNLSFE+  T  +P++K +  KK  +T SG+SARQRR+  + K    H+  
Sbjct: 121  LQKSMLEKQWNLSFEKAATSESPSKKRMTRKKNPVTCSGISARQRRIGAKKKTNMSHVKV 180

Query: 789  TPQ-SRRKQLXXXXXXDLLQN-RLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKS 962
              + S  KQ+      +L QN R+KGYV+GV+SE++L+HAEVVRLSKKIK+GL LDDHKS
Sbjct: 181  VSEVSSGKQVKSVINSELFQNNRVKGYVRGVVSEDVLSHAEVVRLSKKIKSGLRLDDHKS 240

Query: 963  RLKNRLGYNPTDEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGA 1142
            RLK+RLG  P+DE+LA SL +S  ELQ+ L+E  LAREKLAMSNVRLV+SIAQ+YDNMGA
Sbjct: 241  RLKDRLGCEPSDEQLAISLKISRGELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNMGA 300

Query: 1143 EMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHER 1322
            EM+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHER
Sbjct: 301  EMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHER 360

Query: 1323 LSLIRNAKLRLEEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPG 1502
            L LIRNAKLRL+E+GITPSI +IAESLNMSQKKVRNATEA+SK+FSLDR+AFPSLNGLPG
Sbjct: 361  LGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLNGLPG 420

Query: 1503 ETLHSYIADNRLENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWED 1682
            ET HSYIADNRLENNPWHG DEW LKDEV+ LI++TLG RE++IIRLYYGLDKECLTWED
Sbjct: 421  ETHHSYIADNRLENNPWHGYDEWALKDEVSKLISATLGEREREIIRLYYGLDKECLTWED 480

Query: 1683 ISRRIGLSRERVRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            IS+RIGLSRERVRQVGLVALEKLKHAARKRK+EAM++K+
Sbjct: 481  ISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 519


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  675 bits (1741), Expect = 0.0
 Identities = 359/508 (70%), Positives = 418/508 (82%), Gaps = 5/508 (0%)
 Frame = +3

Query: 291  MGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGTS 470
            M TAAVIGLS GKRLLSS+++YSD+ EKL    D G T YQ   TK++I+AKKSS++  +
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60

Query: 471  YP-SNQHPQSIKALKEYVDTSSAAIADAWLES--SDFTEEGGFDIESSVEALLLLQRSML 641
            +P SNQ  QSIKALKE+VD  +  IAD W +S  S+  E    ++  SVEALLLLQ+SML
Sbjct: 61   FPASNQQNQSIKALKEHVD-DAPTIADPWFQSYNSNDLEVESSEMGYSVEALLLLQKSML 119

Query: 642  EKQWNLSFEQRGTRTPAEKNLK--KIMITSSGVSARQRRLNTRNKAFHLNPTPQSRRKQL 815
            EKQWNLSFE+      + K  K  K+ +T SGVSARQRR+NT+ K             QL
Sbjct: 120  EKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRKT----AIKTCGAMQL 175

Query: 816  XXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNPT 995
                  +LLQ+RLKGYVKG++SEELL+HAEVV LS+KIK GLSL++HKSRLK +LG  P+
Sbjct: 176  KSKISPELLQHRLKGYVKGLVSEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEPS 235

Query: 996  DEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGLI 1175
            D+++ATSL +S  EL+++++E SLAREKLAMSNVRLV+SIAQKYDN+GAEM DLVQGGLI
Sbjct: 236  DDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGLI 295

Query: 1176 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRL 1355
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLSLIRNAK RL
Sbjct: 296  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFRL 355

Query: 1356 EEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADNR 1535
            EE+GITP+I +IA+ LNMSQKKVRNATEAISK+ SLDREAFPSLNGL GET HSYIADNR
Sbjct: 356  EERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGETHHSYIADNR 415

Query: 1536 LENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRER 1715
            +EN PW+GVDEW LKDEVN LIN TL  RE++IIRLYYGL+KECLTWEDIS+RIGLSRER
Sbjct: 416  VENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGLEKECLTWEDISKRIGLSRER 475

Query: 1716 VRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            VRQVGLVALEKLKHAARKR++EAML+KH
Sbjct: 476  VRQVGLVALEKLKHAARKRQMEAMLLKH 503


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  673 bits (1737), Expect = 0.0
 Identities = 368/509 (72%), Positives = 419/509 (82%), Gaps = 2/509 (0%)
 Frame = +3

Query: 279  RGHMMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLS-IHDLGLTQYQTASTKNVIIAKKSS 455
            + HMMGTAAVIGLSAG RLL+S+ +YSD+ EKL S ++D+G   + +   KN+I AKK S
Sbjct: 69   QSHMMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPS 128

Query: 456  SFGTSYPSNQHPQSIKALKEYVDTSSA-AIADAWLESSDFTEEGGFDIESSVEALLLLQR 632
            ++  S  SN+  QS+KALKE+V+++SA + AD  L SS    E   D E  VEA LLLQ+
Sbjct: 129  NYTPS--SNRSIQSMKALKEHVESASAPSTADPDLSSSSSEVE---DEEYLVEAFLLLQK 183

Query: 633  SMLEKQWNLSFEQRGTRTPAEKNLKKIMITSSGVSARQRRLNTRNKAFHLNPTPQSRRKQ 812
            SMLEKQWNLSF+ R  R           +T SG SARQRR++ R +   +N   +SR + 
Sbjct: 184  SMLEKQWNLSFKARQKRRE---------VTCSGTSARQRRISGRKRV--MNEKSKSRVRA 232

Query: 813  LXXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNP 992
                     ++NRLKGYVKGV+SEELLTHA+VV LS KIKAGL L+DHKSRLK R+G  P
Sbjct: 233  ALG------VENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEP 286

Query: 993  TDEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGL 1172
            TDE++A SL MS AELQSKL+E SLAREKLAMSNVRLV+SIAQ+YDNMGAEMADLVQGGL
Sbjct: 287  TDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 346

Query: 1173 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLR 1352
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP+HLHERLSLIRNAK+R
Sbjct: 347  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIR 406

Query: 1353 LEEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADN 1532
            LEE+GITPSI +IAE LNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIAD 
Sbjct: 407  LEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADV 466

Query: 1533 RLENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRE 1712
            RLENNPWHGVDEW LKDEVN LIN+TLG RE+DIIRLYYGLD ECLTWEDIS+RIGLSRE
Sbjct: 467  RLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRE 526

Query: 1713 RVRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            RVRQVGLVALEKLK+AARK ++EAMLVK+
Sbjct: 527  RVRQVGLVALEKLKNAARKGRMEAMLVKY 555


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  671 bits (1730), Expect = 0.0
 Identities = 367/510 (71%), Positives = 419/510 (82%), Gaps = 6/510 (1%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLS-IHDLGLTQYQTASTKNVIIAKKSSSFG 464
            MMGTAAVIGLSAG RLL+S+ +YSD+ EKL S ++D+G   + +   KN+I AKK S++ 
Sbjct: 1    MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYT 60

Query: 465  TSYPSNQHPQSIKALKEYVDTSSA-AIADAWLESSDFTEEGGFDIESSVEALLLLQRSML 641
             S  SN+  QS+KALKE+V+++SA + AD  L SS    E   D E  VEA LLLQ+SML
Sbjct: 61   PS--SNRSIQSMKALKEHVESASAPSTADPDLSSSSSEVE---DEEYLVEAFLLLQKSML 115

Query: 642  EKQWNLSFEQRGTRTPAEKNLK----KIMITSSGVSARQRRLNTRNKAFHLNPTPQSRRK 809
            EKQWNLSFE+       +   K    +  +T SG SARQRR++ R +   +N   +SR +
Sbjct: 116  EKQWNLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKRV--MNEKSKSRVR 173

Query: 810  QLXXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYN 989
                      ++NRLKGYVKGV+SEELLTHA+VV LS KIKAGL L+DHKSRLK R+G  
Sbjct: 174  AALG------VENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSE 227

Query: 990  PTDEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGG 1169
            PTDE++A SL MS AELQSKL+E SLAREKLAMSNVRLV+SIAQ+YDNMGAEMADLVQGG
Sbjct: 228  PTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 287

Query: 1170 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKL 1349
            LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP+HLHERLSLIRNAK+
Sbjct: 288  LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKI 347

Query: 1350 RLEEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIAD 1529
            RLEE+GITPSI +IAE LNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIAD
Sbjct: 348  RLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIAD 407

Query: 1530 NRLENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSR 1709
             RLENNPWHGVDEW LKDEVN LIN+TLG RE+DIIRLYYGLD ECLTWEDIS+RIGLSR
Sbjct: 408  VRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSR 467

Query: 1710 ERVRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            ERVRQVGLVALEKLK+AARK ++EAMLVK+
Sbjct: 468  ERVRQVGLVALEKLKNAARKGRMEAMLVKY 497


>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
            lycopersicum]
          Length = 509

 Score =  669 bits (1725), Expect = 0.0
 Identities = 357/508 (70%), Positives = 409/508 (80%), Gaps = 5/508 (0%)
 Frame = +3

Query: 288  MMGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGT 467
            MM T AVIGLSAGKRLLSS+FYYSDL EKL    D  L  +Q  + KNVI AKKSS +  
Sbjct: 1    MMATTAVIGLSAGKRLLSSSFYYSDLNEKLSCSSDHSLPCHQVPTVKNVISAKKSSDYSP 60

Query: 468  SYPSNQHPQSIKALKEYVDTSS-AAIADAWLESSDFTEEGGFDIES-SVEALLLLQRSML 641
            S  S++  QS+KALKE+VD +S  +   +W E  +  +    D E  SVE LLLLQ+SML
Sbjct: 61   SCVSSRKLQSVKALKEHVDIASDPSDVQSWFERFEQLQNESDDEEDDSVEVLLLLQKSML 120

Query: 642  EKQWNLSFEQRGTR-TPAEKNLKKIMITSSGVSARQRRLNTRNK--AFHLNPTPQSRRKQ 812
            EKQWNLS E+  T  T  +KN KK+ I  SG SAR+RR+++R +  A   + TP S  K 
Sbjct: 121  EKQWNLSAEETLTASTQRKKNCKKMHIACSGTSARRRRMDSRQRVLAQKSSATPISATKP 180

Query: 813  LXXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNP 992
            L      DLLQNRLKGYVKG++SEELLTH EV++LSKKIK GL +++ KSRLK RLG  P
Sbjct: 181  LRSILGPDLLQNRLKGYVKGIVSEELLTHTEVLQLSKKIKVGLHVEEQKSRLKERLGCEP 240

Query: 993  TDEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGL 1172
            +D++LA SL MS  +LQS L+E SLARE+L+MSNVRLV+SIAQ+YDNMGAEMADLVQGGL
Sbjct: 241  SDDQLAVSLKMSRTDLQSTLIECSLARERLSMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 1173 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLR 1352
            IGLLRGIEKFD SKG+KISTYVYWWIRQGVSR LVENSRTLRLPTHLHERL LIRNAK+R
Sbjct: 301  IGLLRGIEKFDPSKGYKISTYVYWWIRQGVSRTLVENSRTLRLPTHLHERLGLIRNAKMR 360

Query: 1353 LEEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADN 1532
            LEE+GI PS+  IA SLNMSQKKVRNATEA SKV+SLDRE FPSLNGLPG TLHSYIADN
Sbjct: 361  LEEKGINPSVNNIAASLNMSQKKVRNATEASSKVYSLDREVFPSLNGLPGTTLHSYIADN 420

Query: 1533 RLENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRE 1712
             LENNPWHGVD W LKDEVN+LI+STL  RE++IIRLYYGLD ECLTWEDIS+RIGLSRE
Sbjct: 421  HLENNPWHGVDVWALKDEVNNLISSTLREREREIIRLYYGLDSECLTWEDISKRIGLSRE 480

Query: 1713 RVRQVGLVALEKLKHAARKRKLEAMLVK 1796
            RVRQVGLVALEKLKHAARKR+L+AML+K
Sbjct: 481  RVRQVGLVALEKLKHAARKRRLDAMLIK 508


>ref|XP_007131471.1| hypothetical protein PHAVU_011G016400g [Phaseolus vulgaris]
            gi|561004471|gb|ESW03465.1| hypothetical protein
            PHAVU_011G016400g [Phaseolus vulgaris]
          Length = 504

 Score =  666 bits (1718), Expect = 0.0
 Identities = 355/509 (69%), Positives = 414/509 (81%), Gaps = 6/509 (1%)
 Frame = +3

Query: 291  MGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGTS 470
            M +AAVIGLS GKRLLSS+++YSD+ EKL    D G T YQ  STK+VI+AKKSS++  +
Sbjct: 1    MASAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVSTKSVIVAKKSSNYTPT 60

Query: 471  YPS-NQHPQSIKALKEYVDTSSAAIADAWLES--SDFTEEGGFDIESSVEALLLLQRSML 641
            +P+ N+  QSIK LKE VD  +A +ADAW +S  S+  E    ++  SVEALLLLQ+SML
Sbjct: 61   FPAPNRQNQSIKVLKEIVD-DAATVADAWFQSLSSNDLEVESSEMGYSVEALLLLQKSML 119

Query: 642  EKQWNLSFEQRGT--RTPAEKNLKKIM-ITSSGVSARQRRLNTRNKAFHLNPTPQSRRKQ 812
            EKQW+LSFE  G    +  EKN +K+  +T SGVSARQRR+N + K             Q
Sbjct: 120  EKQWSLSFEGEGVTEHSSKEKNCRKVAAVTCSGVSARQRRMNAKRKT----AVKTGGAVQ 175

Query: 813  LXXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNP 992
            L      +LLQNRLKGYVKGV+SEELL+HA+VV LS+KIK GLSL++HKSR+K RLG  P
Sbjct: 176  LKSKISPELLQNRLKGYVKGVVSEELLSHAQVVSLSEKIKVGLSLEEHKSRMKERLGCEP 235

Query: 993  TDEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGL 1172
            +D+E+ATSL +S+ EL+ K+LE SLAREKLAMSNVRLV+SIAQ+Y+N G EM DLVQGGL
Sbjct: 236  SDDEIATSLKISSTELREKMLECSLAREKLAMSNVRLVMSIAQRYENAGTEMGDLVQGGL 295

Query: 1173 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLR 1352
            IGLLRGIEKFDSSKGFKISTYVYWWIRQGVS+AL+ENSRTLRLP HLHERLSLIRNAKLR
Sbjct: 296  IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSKALIENSRTLRLPAHLHERLSLIRNAKLR 355

Query: 1353 LEEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADN 1532
            LEE+GITP+I +IA+ LNMSQKKVRNATEAISK  SLDREAFPSLNGL G+T HSYIADN
Sbjct: 356  LEERGITPTIDRIAQHLNMSQKKVRNATEAISKTISLDREAFPSLNGLRGDTHHSYIADN 415

Query: 1533 RLENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRE 1712
            R+EN PW GVDEW LKDEVN LIN TL  RE++IIRLYYGL KECLTWEDIS+R+GLSRE
Sbjct: 416  RVENIPWEGVDEWALKDEVNRLINVTLKEREREIIRLYYGLGKECLTWEDISKRMGLSRE 475

Query: 1713 RVRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            RVRQVGLVALEKLKH AR R+LEAML+KH
Sbjct: 476  RVRQVGLVALEKLKHGARNRELEAMLLKH 504


>ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [Amborella trichopoda]
            gi|548832002|gb|ERM94804.1| hypothetical protein
            AMTR_s00011p00266100 [Amborella trichopoda]
          Length = 497

 Score =  666 bits (1718), Expect = 0.0
 Identities = 350/505 (69%), Positives = 414/505 (81%), Gaps = 2/505 (0%)
 Frame = +3

Query: 291  MGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGTS 470
            M TAAVIG+S GKRLL S+F  SD+ E+++ I+D G TQ+   S K+ I++KKS  FG +
Sbjct: 1    MATAAVIGISTGKRLLRSSFLASDI-ERVIPIYDFGATQFPAVSHKSFIVSKKSPGFGPN 59

Query: 471  YPSNQHPQSIKALKEYVDTSSAAIADAWLESSDFTEEGGFDIESSVEALLLLQRSMLEKQ 650
             PSN+  Q I A+KE+V+  S++       SS  T E   D ESS+EAL+LLQ+SMLEKQ
Sbjct: 60   SPSNRQTQYINAIKEHVNAPSSS-------SSSSTTEANPDFESSLEALILLQKSMLEKQ 112

Query: 651  WNLSFEQRGTRTP-AEKNLKKIMITSSGVSARQRRLNTRNKAFHLNPTPQSRRK-QLXXX 824
            WNLSF+Q GT T   E++ KK+ + SSG SARQRR + R        T   RRK Q    
Sbjct: 113  WNLSFDQAGTSTDLCEESCKKLGVISSGASARQRRNSLRRPLNQRAGTVLVRRKKQATPI 172

Query: 825  XXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNPTDEE 1004
               +LLQ   +GYVKG+ ++ LL+HAEVV LS KI+AGLSL++HKSRLK +LG++P+DE 
Sbjct: 173  VSPELLQGHFRGYVKGISNDSLLSHAEVVHLSWKIRAGLSLEEHKSRLKEKLGFDPSDEL 232

Query: 1005 LATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGLIGLL 1184
            LA+SL +S +EL SKL+E SLA+EKLAMSN+RLV+SIAQKYDNMG EMADL+QGGLIGLL
Sbjct: 233  LASSLKISRSELHSKLIECSLAKEKLAMSNIRLVMSIAQKYDNMGIEMADLIQGGLIGLL 292

Query: 1185 RGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRLEEQ 1364
            RGIEKFDSSKGFKISTYVYWWIRQGVSRA+VENSRTLRLPTHLHERLSLIRNAK+RL+EQ
Sbjct: 293  RGIEKFDSSKGFKISTYVYWWIRQGVSRAMVENSRTLRLPTHLHERLSLIRNAKIRLKEQ 352

Query: 1365 GITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADNRLEN 1544
            G+TPSI +IA+SLNMS+KKV+NATEA++KVFSLDREAFP+LNGLPGETLHSYIADN L N
Sbjct: 353  GLTPSIHRIAKSLNMSKKKVKNATEAMTKVFSLDREAFPTLNGLPGETLHSYIADNNLMN 412

Query: 1545 NPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRERVRQ 1724
            NPWHGVDEWLLK EVN LI+STL  REQDIIRLYYGLDKEC TWEDISR+IGLSRERVRQ
Sbjct: 413  NPWHGVDEWLLKAEVNKLISSTLAEREQDIIRLYYGLDKECHTWEDISRKIGLSRERVRQ 472

Query: 1725 VGLVALEKLKHAARKRKLEAMLVKH 1799
            VGLVALEKLK+AAR ++LEAMLVKH
Sbjct: 473  VGLVALEKLKNAARNKRLEAMLVKH 497


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Glycine
            max] gi|571478813|ref|XP_006587676.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Glycine
            max]
          Length = 503

 Score =  665 bits (1716), Expect = 0.0
 Identities = 355/508 (69%), Positives = 415/508 (81%), Gaps = 5/508 (0%)
 Frame = +3

Query: 291  MGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGTS 470
            M TAAVIGLS GKRLLSS+++YSD+ EKL    D G T YQ   TK++I AKKSS++  +
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPT 60

Query: 471  YP-SNQHPQSIKALKEYVDTSSAAIADAWLES--SDFTEEGGFDIESSVEALLLLQRSML 641
            +P SNQ  QSIKALKE+VD  +  IAD+W +S  S+  E    ++  SVEALLLLQ+SML
Sbjct: 61   FPASNQQNQSIKALKEHVD-DAPTIADSWFQSCNSNDLEVESSEMGYSVEALLLLQKSML 119

Query: 642  EKQWNLSFEQR--GTRTPAEKNLKKIMITSSGVSARQRRLNTRNKAFHLNPTPQSRRKQL 815
            EKQWNLSFE+      +   K  KK+ +T SGVSARQRR+NT+ K             QL
Sbjct: 120  EKQWNLSFEREVLTEHSSKGKKCKKVAVTCSGVSARQRRMNTKRKT----AIKTCGAMQL 175

Query: 816  XXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNPT 995
                  +LLQ+RLKGYVKG++SEELL+HAEVV LS++IK GLSL++HKSRLK RLG  P+
Sbjct: 176  KSKISPELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCEPS 235

Query: 996  DEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGLI 1175
            D+++A SL +S  EL+++++E +LAREKLAMSNVRLV+SIAQKYDN+GAEM DLVQGGLI
Sbjct: 236  DDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGLI 295

Query: 1176 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRL 1355
            GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLSLIRNAK RL
Sbjct: 296  GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAKFRL 355

Query: 1356 EEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADNR 1535
            EE+GITP+I +IA+ LNMSQKKVRNATEAISK  SLDREAFPSLNG+ GET HSYIAD+R
Sbjct: 356  EERGITPTIDRIAKYLNMSQKKVRNATEAISKTISLDREAFPSLNGIQGETHHSYIADDR 415

Query: 1536 LENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRER 1715
            +EN PW+GVDEW LKDEVN LIN TL  RE++IIRLYYGLDKE LTWEDIS+RIGLSRER
Sbjct: 416  VENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKEGLTWEDISKRIGLSRER 475

Query: 1716 VRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            VRQVGLVALEKLKHAARKR++EAML+KH
Sbjct: 476  VRQVGLVALEKLKHAARKRQMEAMLLKH 503


>ref|XP_004307835.1| PREDICTED: RNA polymerase sigma factor sigA-like [Fragaria vesca
            subsp. vesca]
          Length = 511

 Score =  662 bits (1707), Expect = 0.0
 Identities = 358/513 (69%), Positives = 414/513 (80%), Gaps = 9/513 (1%)
 Frame = +3

Query: 288  MMGTAAVIGLSA-GKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSS-- 458
            M   AAV+GLS+ GKRLLSS+  YSD+T+KL  ++D G    Q +STKNV+ A+KSSS  
Sbjct: 1    MATAAAVVGLSSTGKRLLSSSLSYSDITDKLFYLNDHGFVNCQLSSTKNVVTARKSSSKY 60

Query: 459  FGTSYPSNQ--HPQSIKALKEYVDTSSAAIADAWLESSDFT--EEGGFDIESSVEALLLL 626
              + +PS+   H QSI+AL+E+ DT+SA  +       ++T  EE   D+E SVEALLLL
Sbjct: 61   SNSRFPSSNRHHEQSIRALQEHADTASAPSSTTHQLLEEYTDLEEESSDLEYSVEALLLL 120

Query: 627  QRSMLEKQWNLSFEQRGTRTPAEKNLKKIMITSSGVSARQRRLNTRNKAFHLNPTP--QS 800
            Q+S+LEKQWNLSFE++ +      N  KI +T SGVSARQRR++T+ KAF  N +    S
Sbjct: 121  QKSLLEKQWNLSFEKKLSTRKITDN--KIPVTCSGVSARQRRMSTKRKAFSKNTSELQPS 178

Query: 801  RRKQLXXXXXXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRL 980
              K         LLQNR  GYVKGV S+ LLTH EVVRLSKKIK GLS+++HKSRLK +L
Sbjct: 179  TNKYCRATISPSLLQNRTSGYVKGVTSDHLLTHTEVVRLSKKIKIGLSVEEHKSRLKEKL 238

Query: 981  GYNPTDEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLV 1160
            G  P+ E+LATSL +S  ELQSKL++ SLAREKL MSNVRLV+SIAQ+YDNMGAEMADL+
Sbjct: 239  GCEPSVEQLATSLRISRTELQSKLIQCSLAREKLTMSNVRLVMSIAQRYDNMGAEMADLI 298

Query: 1161 QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRN 1340
            QGGLIGLLRGIEKFD+SKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERL LIRN
Sbjct: 299  QGGLIGLLRGIEKFDASKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRN 358

Query: 1341 AKLRLEEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSY 1520
            AK+RLEE+GITPSI  IAESLNMS+KKVRNATEAISKVFSLDR+AFPSLNGLPGET HSY
Sbjct: 359  AKVRLEEKGITPSIDSIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGETHHSY 418

Query: 1521 IADNRLENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIG 1700
            IADNR EN PWHG+DE  LKDEVN LIN  LG RE++IIRLYYGLD ECLTWEDIS+RIG
Sbjct: 419  IADNRHENIPWHGLDELALKDEVNKLINLMLGEREREIIRLYYGLDNECLTWEDISKRIG 478

Query: 1701 LSRERVRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            LSRERVRQVGLVALEKLKH ARK++LEAMLV+H
Sbjct: 479  LSRERVRQVGLVALEKLKHGARKKELEAMLVQH 511


>ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Capsella rubella]
            gi|482570853|gb|EOA35041.1| hypothetical protein
            CARUB_v10020145mg [Capsella rubella]
          Length = 521

 Score =  659 bits (1699), Expect = 0.0
 Identities = 362/523 (69%), Positives = 427/523 (81%), Gaps = 20/523 (3%)
 Frame = +3

Query: 291  MGTAAVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSS---F 461
            M TAAVIGL+ GKRLLSS+FY+SD+TEK LS++D   +QY  ASTK+ I AKK+SS   +
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASSSSNY 60

Query: 462  GTSYPS-NQHPQSIKALKEYVDTSSAAIADAWLES---SDFTEEGGFD----IESSVEAL 617
              S+PS N+H QS KA+ E VD   A+    W+ +    +F EEGG+D    I  SVEAL
Sbjct: 61   SPSFPSSNRHTQSAKAVTESVDVV-ASTEQPWVPNVTDKEF-EEGGYDDDVLIGHSVEAL 118

Query: 618  LLLQRSMLEKQWNLSFEQRGTRTPAEKNL---KKI-MITSSGVSARQRRLNTRNKAFHLN 785
            LLLQ+SMLEK WNLSFE+  +   + K     KK+ +IT SG+SARQRR+  + K    +
Sbjct: 119  LLLQKSMLEKSWNLSFEKAASSESSGKRTIRKKKVPVITCSGISARQRRIGAKKKTNMTS 178

Query: 786  P---TPQSRRKQLXXXXXXDLLQ-NRLKG-YVKGVISEELLTHAEVVRLSKKIKAGLSLD 950
                +  S  KQ+      +L Q NR++G YVKGVISE++L+H EVVRLSKKIK+GL LD
Sbjct: 179  AKAVSDVSSGKQVRSVMSSELFQHNRVRGGYVKGVISEDVLSHTEVVRLSKKIKSGLRLD 238

Query: 951  DHKSRLKNRLGYNPTDEELATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYD 1130
            DHKSRLK+RLG  P+DE+LA SL +S AELQ+ L+E  LAREKLAMSNVRLV+SIAQ+YD
Sbjct: 239  DHKSRLKDRLGCEPSDEQLAISLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYD 298

Query: 1131 NMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTH 1310
            N+GAEM+DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTH
Sbjct: 299  NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 358

Query: 1311 LHERLSLIRNAKLRLEEQGITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLN 1490
            LHERL LIRNAKLRL+E+GITPSI +IAESLNMSQKKVRNATEA+SK+FSLDR+AFPSLN
Sbjct: 359  LHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDAFPSLN 418

Query: 1491 GLPGETLHSYIADNRLENNPWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECL 1670
            GLPGET HSYIADNRLENNPWHG DE  LK+EV+ LI +TLG RE++IIRLYYGLDKECL
Sbjct: 419  GLPGETHHSYIADNRLENNPWHGYDELALKEEVSKLITATLGEREREIIRLYYGLDKECL 478

Query: 1671 TWEDISRRIGLSRERVRQVGLVALEKLKHAARKRKLEAMLVKH 1799
            TWEDIS+RIGLSRERVRQVGLVALEKLKHAARKRK+EAM++K+
Sbjct: 479  TWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 521


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  657 bits (1696), Expect = 0.0
 Identities = 353/504 (70%), Positives = 405/504 (80%), Gaps = 5/504 (0%)
 Frame = +3

Query: 303  AVIGLSAGKRLLSSAFYYSDLTEKLLSIHDLGLTQYQTASTKNVIIAKKSSSFGTSYPSN 482
            A+IGLSAG R+LSS+FYYS LTEK   + D  L  +   S KNVI AK SS++  SY SN
Sbjct: 3    AIIGLSAGNRILSSSFYYSVLTEKFC-VSDHALPCHHFPSPKNVINAKNSSNYSPSYVSN 61

Query: 483  QHPQSIKALKEYVDTSSAAIADA--WLESSDFTEEGGFDIESSVEALLLLQRSMLEKQWN 656
            +  QS+KALKE+VD +S   +D   W++     + G    E SVE LLLLQ+SMLEKQWN
Sbjct: 62   RKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEVLLLLQKSMLEKQWN 121

Query: 657  LSFEQRGTRTPAEKNLKKIM-ITSSGVSARQRRLNTRNKAF--HLNPTPQSRRKQLXXXX 827
            LS E+  T    E N KK M IT SG SAR+RR++TR +      + T  S  K+L    
Sbjct: 122  LSAEKAMTN---ENNCKKKMQITCSGTSARRRRMDTRKRDLLPKNSATSDSSSKRLRSVI 178

Query: 828  XXDLLQNRLKGYVKGVISEELLTHAEVVRLSKKIKAGLSLDDHKSRLKNRLGYNPTDEEL 1007
              +LLQNR KGY+ GV+ +ELLTH EVV+LSKKIK GL L++ KSRLK RLG  P+D++L
Sbjct: 179  GPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQL 238

Query: 1008 ATSLSMSNAELQSKLLESSLAREKLAMSNVRLVLSIAQKYDNMGAEMADLVQGGLIGLLR 1187
            A SL +S A+L+S L+E SLAREKLAMSNVRLV+SIAQ+YD  G EMADL+QGGLIGLLR
Sbjct: 239  AISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLLR 298

Query: 1188 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLSLIRNAKLRLEEQG 1367
            GIEKFD S+GFKISTYVYWWIRQGVSRALVENSRTLRLP HLHERLSLIRNAK++L+E G
Sbjct: 299  GIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKENG 358

Query: 1368 ITPSIAKIAESLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADNRLENN 1547
            ITPSI KIAE LNMSQKKVRNATEA SKVFSLDREAFPSLNGLPGETLHSYIADNRLEN 
Sbjct: 359  ITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLENI 418

Query: 1548 PWHGVDEWLLKDEVNDLINSTLGAREQDIIRLYYGLDKECLTWEDISRRIGLSRERVRQV 1727
            PWHGVDEW+LKDEVN+LI+STL  RE++I+RLYYGLD ECLTWEDISRRIGLSRERVRQV
Sbjct: 419  PWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLTWEDISRRIGLSRERVRQV 478

Query: 1728 GLVALEKLKHAARKRKLEAMLVKH 1799
            GLVALEKLKHAARKR+L+AMLVKH
Sbjct: 479  GLVALEKLKHAARKRRLDAMLVKH 502