BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00008328
         (941 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   177   7e-42
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   175   2e-41
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   174   5e-41
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...   170   9e-40
ref|XP_007017901.1| Pseudouridine synthase family protein isofor...   169   1e-39
ref|XP_007017900.1| Pseudouridine synthase family protein isofor...   169   1e-39
gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   168   3e-39
gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus...   168   3e-39
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps...   167   6e-39
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...   166   1e-38
ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A...   164   6e-38
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   164   6e-38
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...   163   1e-37
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   162   1e-37
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   162   1e-37
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   162   2e-37
ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chl...   162   2e-37
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   161   3e-37
ref|XP_006435255.1| hypothetical protein CICLE_v10001736mg [Citr...   161   3e-37
ref|XP_006435254.1| hypothetical protein CICLE_v10001736mg [Citr...   161   3e-37

>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
           lycopersicum]
          Length = 436

 Score =  177 bits (448), Expect = 7e-42
 Identities = 88/137 (64%), Positives = 103/137 (75%), Gaps = 1/137 (0%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSH+++ GDKV+CTI+DL+PLRA+PEDIPLDIVYED HVLVVNKPAHMVVHPAPGNA 
Sbjct: 106 DKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNAT 165

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFD-NHSSSGVISSSRCTDAIRPG 483
           GTLV+GILHHC+   ++F    +L             F  N S +   SS  C  ++RPG
Sbjct: 166 GTLVSGILHHCSLPTVSFPGEEVLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPG 225

Query: 484 IVHRLDKGTSGLLVVAK 534
           IVHRLDKGTSGLLVVAK
Sbjct: 226 IVHRLDKGTSGLLVVAK 242



 Score =  130 bits (327), Expect = 8e-28
 Identities = 61/91 (67%), Positives = 77/91 (84%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +K+EHS A L+EQFK+HT++RVY+S++ GVP+ ++GR+D+PIGRD NNRIRMAAIPG   
Sbjct: 241 AKNEHSLADLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPK 300

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
             + RHA SRYKVIE L GGG+ALVEWRLET
Sbjct: 301 SGKSRHAVSRYKVIEKLAGGGSALVEWRLET 331


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
           [Solanum tuberosum]
          Length = 431

 Score =  175 bits (444), Expect = 2e-41
 Identities = 88/137 (64%), Positives = 103/137 (75%), Gaps = 1/137 (0%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSH+++ GDKV+CTI+DL+PLRA+PEDIPLDIV+ED HVLVVNKPAHMVVHPAPGNA 
Sbjct: 106 DKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNAT 165

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFD-NHSSSGVISSSRCTDAIRPG 483
           GTLV+GILHHC+   I+F    +L             F  N S +   SS  C  ++RPG
Sbjct: 166 GTLVSGILHHCSLPTISFLGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVMCESSVRPG 225

Query: 484 IVHRLDKGTSGLLVVAK 534
           IVHRLDKGTSGLLVVAK
Sbjct: 226 IVHRLDKGTSGLLVVAK 242



 Score =  124 bits (312), Expect = 4e-26
 Identities = 59/91 (64%), Positives = 76/91 (83%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +K+E+S A L+EQFK+HT++RVY+S++ GVP+ ++GR+D+PIGRD NNRIRMAAIPG   
Sbjct: 241 AKNENSLASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPK 300

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
             + RHA SRYKVIE L  GG+ALVEWRLET
Sbjct: 301 SGKSRHAVSRYKVIEKLARGGSALVEWRLET 331


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score =  174 bits (441), Expect = 5e-41
 Identities = 90/136 (66%), Positives = 100/136 (73%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSHVIR+GDKVNCTIS+LQPLRA+PEDIPLDIVYED HVLVVNKPAHMVVHPAPGNA 
Sbjct: 112 DKVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNAS 171

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGI 486
           GTLVNGILHHC+   +A  +                  + +S +   +   C   IRPGI
Sbjct: 172 GTLVNGILHHCSLPTVALPNR-------DSEEDDISDDEFNSFAAGQNCGTCETNIRPGI 224

Query: 487 VHRLDKGTSGLLVVAK 534
           VHRLDKGTSGLLVVAK
Sbjct: 225 VHRLDKGTSGLLVVAK 240



 Score =  146 bits (368), Expect = 1e-32
 Identities = 66/91 (72%), Positives = 79/91 (86%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHAHLSEQFK H++ RVYISL+SGVP+P+SGR+++P+GRD NNRIRM A+PG  N
Sbjct: 239 AKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSN 298

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
             Q RHA SRYKVIE+L  GG+ALVEWRLET
Sbjct: 299 SGQARHAASRYKVIEILAAGGSALVEWRLET 329


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 399

 Score =  170 bits (430), Expect = 9e-40
 Identities = 87/136 (63%), Positives = 96/136 (70%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSH ++ GDKV CTIS+LQPLRA+PED+PLDIVYED H+LVVNKP HMVVHPAPGN  
Sbjct: 107 DKVSHNVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPT 166

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGI 486
           GTLVNGILHHC    +A SS  +L              D         SS C  +IRPGI
Sbjct: 167 GTLVNGILHHCNLPTVAISSQEVLSDAE----------DRSDDDERSYSSSCESSIRPGI 216

Query: 487 VHRLDKGTSGLLVVAK 534
           VHRLDKGTSGLLVVAK
Sbjct: 217 VHRLDKGTSGLLVVAK 232



 Score =  148 bits (373), Expect = 3e-33
 Identities = 68/91 (74%), Positives = 80/91 (87%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEH+HAHLSEQFKQHT+QRVYISL+SGVPS ++GRID+PIGRD+NNRIRM AIPG   
Sbjct: 231 AKDEHAHAHLSEQFKQHTIQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMTAIPGPIK 290

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
             + RHA SR+KV+E L GGG+ALVEWRLET
Sbjct: 291 QGRARHAASRFKVVETLAGGGSALVEWRLET 321


>ref|XP_007017901.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
           cacao] gi|508723229|gb|EOY15126.1| Pseudouridine
           synthase family protein isoform 2, partial [Theobroma
           cacao]
          Length = 409

 Score =  169 bits (428), Expect = 1e-39
 Identities = 86/136 (63%), Positives = 96/136 (70%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSH +R GDKVNC IS+LQPLRA+PEDIPLDIVYED HVLVVNKP HMVVHPAPGNA 
Sbjct: 102 DKVSHGLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNAT 161

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGI 486
           GTLVNGILHHC+   +A S   +L               +    G    +    ++RPGI
Sbjct: 162 GTLVNGILHHCSLPTVALSEKEVLSDTEDV---------SDDDEGFCYGASAAASVRPGI 212

Query: 487 VHRLDKGTSGLLVVAK 534
           VHRLDKGTSGLLVVAK
Sbjct: 213 VHRLDKGTSGLLVVAK 228



 Score =  125 bits (313), Expect = 3e-26
 Identities = 56/79 (70%), Positives = 69/79 (87%)
 Frame = +2

Query: 704 QFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYK 883
           +FKQHT+QRVYISL+ GVPSP +GR+D+ IGRD NNR+RM A+PGL +H + RHA SRYK
Sbjct: 228 KFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHAASRYK 287

Query: 884 VIEVLGGGGAALVEWRLET 940
           VIEVL GGG+AL++WRLET
Sbjct: 288 VIEVLAGGGSALIQWRLET 306


>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
           gi|508723228|gb|EOY15125.1| Pseudouridine synthase
           family protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  169 bits (428), Expect = 1e-39
 Identities = 86/136 (63%), Positives = 96/136 (70%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSH +R GDKVNC IS+LQPLRA+PEDIPLDIVYED HVLVVNKP HMVVHPAPGNA 
Sbjct: 115 DKVSHGLRHGDKVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNAT 174

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGI 486
           GTLVNGILHHC+   +A S   +L               +    G    +    ++RPGI
Sbjct: 175 GTLVNGILHHCSLPTVALSEKEVLSDTEDV---------SDDDEGFCYGASAAASVRPGI 225

Query: 487 VHRLDKGTSGLLVVAK 534
           VHRLDKGTSGLLVVAK
Sbjct: 226 VHRLDKGTSGLLVVAK 241



 Score =  149 bits (376), Expect = 2e-33
 Identities = 67/91 (73%), Positives = 81/91 (89%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSH+HLSEQFKQHT+QRVYISL+ GVPSP +GR+D+ IGRD NNR+RM A+PGL +
Sbjct: 240 AKDEHSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNH 299

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
           H + RHA SRYKVIEVL GGG+AL++WRLET
Sbjct: 300 HGRARHAASRYKVIEVLAGGGSALIQWRLET 330


>gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 422

 Score =  168 bits (425), Expect = 3e-39
 Identities = 84/135 (62%), Positives = 98/135 (72%)
 Frame = +1

Query: 130 KVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNADG 309
           KVSHV+R GD VNCTI++LQPLRA+PE+IPLDIVYED H+LVVNKPAHMVVHPAPGNA+G
Sbjct: 111 KVSHVVRDGDSVNCTIAELQPLRAEPENIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANG 170

Query: 310 TLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGIV 489
           TLVNGILHHC  S + F+   +               D+  S    +      ++RPGIV
Sbjct: 171 TLVNGILHHCRLSTVCFNPESL-----------PDNIDDDDSIDEATVFPSESSVRPGIV 219

Query: 490 HRLDKGTSGLLVVAK 534
           HRLDKGTSGLLVVAK
Sbjct: 220 HRLDKGTSGLLVVAK 234



 Score =  149 bits (375), Expect = 2e-33
 Identities = 67/91 (73%), Positives = 80/91 (87%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSH+HL+EQFK+HTV+RVY+SL+ GVPSP+SGR+D+PIGRD NNRIRM AIPG   
Sbjct: 233 AKDEHSHSHLAEQFKKHTVKRVYVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAIPGSAL 292

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
           H + RHA SRYKV+E+L GGG ALVEWRLET
Sbjct: 293 HGKARHAVSRYKVVEILAGGGCALVEWRLET 323


>gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
          Length = 432

 Score =  168 bits (425), Expect = 3e-39
 Identities = 84/135 (62%), Positives = 98/135 (72%)
 Frame = +1

Query: 130 KVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNADG 309
           KVSHV+R GD VNCTI++LQPLRA+PE+IPLDIVYED H+LVVNKPAHMVVHPAPGNA+G
Sbjct: 111 KVSHVVRDGDSVNCTIAELQPLRAEPENIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANG 170

Query: 310 TLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGIV 489
           TLVNGILHHC  S + F+   +               D+  S    +      ++RPGIV
Sbjct: 171 TLVNGILHHCRLSTVCFNPESL-----------PDNIDDDDSIDEATVFPSESSVRPGIV 219

Query: 490 HRLDKGTSGLLVVAK 534
           HRLDKGTSGLLVVAK
Sbjct: 220 HRLDKGTSGLLVVAK 234



 Score =  149 bits (375), Expect = 2e-33
 Identities = 67/91 (73%), Positives = 80/91 (87%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSH+HL+EQFK+HTV+RVY+SL+ GVPSP+SGR+D+PIGRD NNRIRM AIPG   
Sbjct: 233 AKDEHSHSHLAEQFKKHTVKRVYVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAIPGSAL 292

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
           H + RHA SRYKV+E+L GGG ALVEWRLET
Sbjct: 293 HGKARHAVSRYKVVEILAGGGCALVEWRLET 323


>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
           gi|482570987|gb|EOA35175.1| hypothetical protein
           CARUB_v10020321mg [Capsella rubella]
          Length = 432

 Score =  167 bits (423), Expect = 6e-39
 Identities = 87/138 (63%), Positives = 102/138 (73%), Gaps = 2/138 (1%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSH +++GD+VNCTIS+LQPL+A+ EDIPLDIVYED HVLVVNKPAHMVVHPAPGN  
Sbjct: 117 DKVSHNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPT 176

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSG--VISSSRCTDAIRP 480
           GTLVNGILHHC+  ++A+SS                  D   S G  + SSS    ++RP
Sbjct: 177 GTLVNGILHHCSLPSVAYSS-----------PEDDDSDDESFSDGEEMTSSSSYAASVRP 225

Query: 481 GIVHRLDKGTSGLLVVAK 534
           GIVHRLDKGT+GLLVVAK
Sbjct: 226 GIVHRLDKGTTGLLVVAK 243



 Score =  142 bits (357), Expect = 2e-31
 Identities = 66/91 (72%), Positives = 79/91 (86%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHAHL+EQFK HT++RVY+SL++GVPSP  GRI++PIGRD +NRIRMAAIPG  +
Sbjct: 242 AKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGLS 301

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
             + RHA SRYKVIE L GGG+ALVEWRLET
Sbjct: 302 SGRARHAASRYKVIETLAGGGSALVEWRLET 332


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
           gi|557086678|gb|ESQ27530.1| hypothetical protein
           EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score =  166 bits (420), Expect = 1e-38
 Identities = 86/139 (61%), Positives = 102/139 (73%), Gaps = 3/139 (2%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSH +++GD+VNCTIS+LQPL+A+PEDIPLDIVYED H+LVVNKPAHMVVHPAPGN  
Sbjct: 118 DKVSHNVKAGDEVNCTISELQPLKAEPEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNPT 177

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSG---VISSSRCTDAIR 477
           GTLVNGILHHC+   +A+S+                  D  + S    + SSS    ++R
Sbjct: 178 GTLVNGILHHCSLPCVAYSN-------------PEDDSDEETLSDDEEMTSSSSLAASVR 224

Query: 478 PGIVHRLDKGTSGLLVVAK 534
           PGIVHRLDKGTSGLLVVAK
Sbjct: 225 PGIVHRLDKGTSGLLVVAK 243



 Score =  147 bits (372), Expect = 5e-33
 Identities = 69/91 (75%), Positives = 79/91 (86%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHAHL+EQFK HT++RVYISL+SGVPSP  GR+D+PIGRD NNRIRMAAIPG  +
Sbjct: 242 AKDEHSHAHLAEQFKLHTIERVYISLTSGVPSPSQGRVDIPIGRDPNNRIRMAAIPGSLS 301

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
             + RHA SRYKVIE L GGG+ALVEWRLET
Sbjct: 302 RGKARHAASRYKVIETLAGGGSALVEWRLET 332


>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
           gi|548833830|gb|ERM96267.1| hypothetical protein
           AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score =  164 bits (414), Expect = 6e-38
 Identities = 81/135 (60%), Positives = 96/135 (71%)
 Frame = +1

Query: 130 KVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNADG 309
           KVSH+++ GD V+CT+S LQPL+A+PED+PLDI+YED HVLVVNKPAHMVVHPAPGNA+G
Sbjct: 119 KVSHIVKVGDMVDCTVSHLQPLKAEPEDMPLDIIYEDDHVLVVNKPAHMVVHPAPGNANG 178

Query: 310 TLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGIV 489
           TLVNGILHHCT          +              F+         S++C  +IRPGIV
Sbjct: 179 TLVNGILHHCTLPAFGLPDGELTSESDDECDNGLTMFNPDP-----ISTQCRSSIRPGIV 233

Query: 490 HRLDKGTSGLLVVAK 534
           HRLDKGTSGLLVVAK
Sbjct: 234 HRLDKGTSGLLVVAK 248



 Score =  129 bits (324), Expect = 2e-27
 Identities = 62/91 (68%), Positives = 75/91 (82%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +K+EHSHAHLSEQFK HT+ R YISL+ GVPSP +G I++PI RD+NNRIRMAA+ G  N
Sbjct: 247 AKNEHSHAHLSEQFKLHTIHRQYISLTCGVPSPSNGCIEIPIARDMNNRIRMAAVSGQNN 306

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
            R+ R A SRY V+EVL GGG+ALVEWRL+T
Sbjct: 307 TRKARLATSRYHVMEVLAGGGSALVEWRLQT 337


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
           gi|222843675|gb|EEE81222.1| pseudouridine synthase
           family protein [Populus trichocarpa]
          Length = 444

 Score =  164 bits (414), Expect = 6e-38
 Identities = 87/136 (63%), Positives = 101/136 (74%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSH +++GDKVNC IS+LQPLRA+PE+IPLDIVYED +VLVVNKPAHMVVHPAPGNA 
Sbjct: 129 DKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNAT 188

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGI 486
           GTLVNGILHHC+   +  SS  +L               +    G+ SSS    ++RPGI
Sbjct: 189 GTLVNGILHHCSLPTV--SSQEVL--------SGAEDVSDDDDEGLCSSSYAA-SVRPGI 237

Query: 487 VHRLDKGTSGLLVVAK 534
           VHRLDKGTSGLLVVAK
Sbjct: 238 VHRLDKGTSGLLVVAK 253



 Score =  140 bits (353), Expect = 7e-31
 Identities = 68/91 (74%), Positives = 80/91 (87%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHAHLSEQFK HT++RVY+SL+ GVP+P++GRIDVPIGRD++NRIRMAAI    N
Sbjct: 252 AKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVE-PN 310

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
             Q RHA SRYKVIE+L GGG+ALVEWRLET
Sbjct: 311 RGQARHAASRYKVIEILAGGGSALVEWRLET 341


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score =  163 bits (412), Expect = 1e-37
 Identities = 84/137 (61%), Positives = 100/137 (72%), Gaps = 2/137 (1%)
 Frame = +1

Query: 130 KVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNADG 309
           KVSH+++ GD V+CT+S+LQPLRA+PEDIPLDIVYED H+LVVNKPAHMVVHPAPGNA+G
Sbjct: 110 KVSHMVKGGDIVSCTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANG 169

Query: 310 TLVNGILHHCTFSNI-AFSSNGMLXXXXXXXXXXXXXFD-NHSSSGVISSSRCTDAIRPG 483
           TLVN ILHHC  S     + N +              FD +  ++G +SS      +RPG
Sbjct: 170 TLVNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPG 229

Query: 484 IVHRLDKGTSGLLVVAK 534
           IVHRLDKGTSGLLVVAK
Sbjct: 230 IVHRLDKGTSGLLVVAK 246



 Score =  132 bits (331), Expect = 3e-28
 Identities = 65/91 (71%), Positives = 73/91 (80%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHA L+EQFK HT++RVYISL+ G P+P SGRI+VPI RD NNRIRM A PG   
Sbjct: 245 AKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG-SG 303

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
           HR  RHA SRYKV EV  GGG+ALVEWRLET
Sbjct: 304 HRYARHAASRYKVREVFAGGGSALVEWRLET 334


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
           chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  162 bits (411), Expect = 1e-37
 Identities = 89/137 (64%), Positives = 101/137 (73%), Gaps = 1/137 (0%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSH +++GD +NCTIS+LQPLRA+PEDI LDIVYED HVLVVNKPAHMVVHPAPGNA 
Sbjct: 112 DKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNAT 171

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDA-IRPG 483
           GTLVN IL+HC+   +A S+                  D  SS GV   SR ++A IRPG
Sbjct: 172 GTLVNAILNHCSLPMVATSTG-------ENESDSDVSDDEFSSIGVF--SRVSEAPIRPG 222

Query: 484 IVHRLDKGTSGLLVVAK 534
           IVHRLDKGTSGLLVVAK
Sbjct: 223 IVHRLDKGTSGLLVVAK 239



 Score =  120 bits (300), Expect = 1e-24
 Identities = 58/91 (63%), Positives = 73/91 (80%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHAHLS QFKQH+++RVYISL+ GVP   +GRI++PI RD NNRIRM AI G  N
Sbjct: 238 AKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDG-TN 296

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
           +   ++A SRY V+E+L  GG++LVEWRLET
Sbjct: 297 NPHAKYAASRYNVMEILAQGGSSLVEWRLET 327


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
           sativus]
          Length = 453

 Score =  162 bits (411), Expect = 1e-37
 Identities = 89/137 (64%), Positives = 101/137 (73%), Gaps = 1/137 (0%)
 Frame = +1

Query: 127 DKVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAD 306
           DKVSH +++GD +NCTIS+LQPLRA+PEDI LDIVYED HVLVVNKPAHMVVHPAPGNA 
Sbjct: 112 DKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNAT 171

Query: 307 GTLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDA-IRPG 483
           GTLVN IL+HC+   +A S+                  D  SS GV   SR ++A IRPG
Sbjct: 172 GTLVNAILNHCSLPMVATSTG-------ENESDSDVSDDEFSSIGVF--SRVSEAPIRPG 222

Query: 484 IVHRLDKGTSGLLVVAK 534
           IVHRLDKGTSGLLVVAK
Sbjct: 223 IVHRLDKGTSGLLVVAK 239



 Score =  123 bits (309), Expect = 9e-26
 Identities = 58/91 (63%), Positives = 73/91 (80%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHAHLS QFKQH+++RVYISL+ GVP   +GRI++PI RD NNRIRM AI G  N
Sbjct: 238 AKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKN 297

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
           +   ++A SRY V+E+L  GG++LVEWRLET
Sbjct: 298 NPHAKYAASRYNVMEILAQGGSSLVEWRLET 328


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
           brachyantha]
          Length = 442

 Score =  162 bits (410), Expect = 2e-37
 Identities = 85/138 (61%), Positives = 101/138 (73%), Gaps = 3/138 (2%)
 Frame = +1

Query: 130 KVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNADG 309
           KVSH+++ GD V+CT+S+LQPLRA+PEDIPLDIVYED H+LVVNKPAHMVVHPAPGNA+G
Sbjct: 108 KVSHMVKGGDMVSCTVSELQPLRAEPEDIPLDIVYEDQHLLVVNKPAHMVVHPAPGNANG 167

Query: 310 TLVNGILHHC---TFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRP 480
           TLVN ILHHC   TF+ +A +S                  D   ++G +SS      +RP
Sbjct: 168 TLVNAILHHCKISTFTCLARNSTDDECPDSSDDDIDVFHVDQF-TTGEVSSEVREALVRP 226

Query: 481 GIVHRLDKGTSGLLVVAK 534
           GIVHRLDKGTSGLLVVAK
Sbjct: 227 GIVHRLDKGTSGLLVVAK 244



 Score =  130 bits (328), Expect = 6e-28
 Identities = 64/91 (70%), Positives = 73/91 (80%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHA L+EQFK HT++RVYISL+ G P+P SGRI+VPI RD NNRIRM A PG   
Sbjct: 243 AKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPG-SG 301

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
           HR  RHA SRYKV EV  GGG+ALVEW+LET
Sbjct: 302 HRYARHAASRYKVREVFAGGGSALVEWKLET 332


>ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
           [Setaria italica]
          Length = 437

 Score =  162 bits (410), Expect = 2e-37
 Identities = 86/138 (62%), Positives = 100/138 (72%), Gaps = 3/138 (2%)
 Frame = +1

Query: 130 KVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNADG 309
           KVSH+++ GD V+CT+S+LQPLRA+ EDIPLDIVYED HVLVVNKPAHMVVHPAPGNA+G
Sbjct: 106 KVSHMVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANG 165

Query: 310 TLVNGILHHC---TFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRP 480
           TLVN ILHHC   TF+ +A +S G                D  ++  V S  R    +RP
Sbjct: 166 TLVNAILHHCRISTFTCLARNSTGDECPDSSDDDVDVFDVDQFTTEDVSSEVR-NALVRP 224

Query: 481 GIVHRLDKGTSGLLVVAK 534
           GIVHRLDKGTSGLLVVAK
Sbjct: 225 GIVHRLDKGTSGLLVVAK 242



 Score =  124 bits (310), Expect = 7e-26
 Identities = 63/91 (69%), Positives = 70/91 (76%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHA L+EQFK HT++RVYISL+ GVP P SGRI+  I RD NNRIRM AI G   
Sbjct: 241 AKDEHSHAQLAEQFKLHTIRRVYISLTCGVPHPNSGRIEASIARDPNNRIRMIAIAG-SG 299

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
            R  RHA SRYKV EV  GGG+ALVEWRLET
Sbjct: 300 QRYARHAASRYKVREVFAGGGSALVEWRLET 330


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
           sinensis]
          Length = 421

 Score =  161 bits (408), Expect = 3e-37
 Identities = 86/135 (63%), Positives = 97/135 (71%)
 Frame = +1

Query: 130 KVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNADG 309
           KVSH ++ GD VNCTIS+LQPLRA+ EDIPLDIVYED +VLVVNKPAHMVVHPAPGNA G
Sbjct: 107 KVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 166

Query: 310 TLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGIV 489
           TLVNGILHHC+   +A S+                  ++ S     SSS    +IRPGIV
Sbjct: 167 TLVNGILHHCSLPTLASSNQEAFSDA-----------EDISDDEEFSSSISGASIRPGIV 215

Query: 490 HRLDKGTSGLLVVAK 534
           HRLDKGTSGLLVVAK
Sbjct: 216 HRLDKGTSGLLVVAK 230



 Score =  149 bits (375), Expect = 2e-33
 Identities = 72/91 (79%), Positives = 79/91 (86%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHAHLSEQFK HT++RVYISL+SGVPS  SGRI+VPI RD NNRIRMAAIPG   
Sbjct: 229 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 288

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
           H Q RHA SRYKVIE+L GGG+ALVEWRLET
Sbjct: 289 HGQARHAASRYKVIEILAGGGSALVEWRLET 319


>ref|XP_006435255.1| hypothetical protein CICLE_v10001736mg [Citrus clementina]
           gi|557537377|gb|ESR48495.1| hypothetical protein
           CICLE_v10001736mg [Citrus clementina]
          Length = 341

 Score =  161 bits (408), Expect = 3e-37
 Identities = 86/135 (63%), Positives = 97/135 (71%)
 Frame = +1

Query: 130 KVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNADG 309
           KVSH ++ GD VNCTIS+LQPLRA+ EDIPLDIVYED +VLVVNKPAHMVVHPAPGNA G
Sbjct: 107 KVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 166

Query: 310 TLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGIV 489
           TLVNGILHHC+   +A S+                  ++ S     SSS    +IRPGIV
Sbjct: 167 TLVNGILHHCSLPTLASSNQEAFSDA-----------EDISDDEEFSSSISGASIRPGIV 215

Query: 490 HRLDKGTSGLLVVAK 534
           HRLDKGTSGLLVVAK
Sbjct: 216 HRLDKGTSGLLVVAK 230



 Score =  149 bits (375), Expect = 2e-33
 Identities = 72/91 (79%), Positives = 79/91 (86%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHAHLSEQFK HT++RVYISL+SGVPS  SGRI+VPI RD NNRIRMAAIPG   
Sbjct: 229 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 288

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
           H Q RHA SRYKVIE+L GGG+ALVEWRLET
Sbjct: 289 HGQARHAASRYKVIEILAGGGSALVEWRLET 319


>ref|XP_006435254.1| hypothetical protein CICLE_v10001736mg [Citrus clementina]
           gi|557537376|gb|ESR48494.1| hypothetical protein
           CICLE_v10001736mg [Citrus clementina]
          Length = 324

 Score =  161 bits (408), Expect = 3e-37
 Identities = 86/135 (63%), Positives = 97/135 (71%)
 Frame = +1

Query: 130 KVSHVIRSGDKVNCTISDLQPLRAKPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNADG 309
           KVSH ++ GD VNCTIS+LQPLRA+ EDIPLDIVYED +VLVVNKPAHMVVHPAPGNA G
Sbjct: 107 KVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 166

Query: 310 TLVNGILHHCTFSNIAFSSNGMLXXXXXXXXXXXXXFDNHSSSGVISSSRCTDAIRPGIV 489
           TLVNGILHHC+   +A S+                  ++ S     SSS    +IRPGIV
Sbjct: 167 TLVNGILHHCSLPTLASSNQEAFSDA-----------EDISDDEEFSSSISGASIRPGIV 215

Query: 490 HRLDKGTSGLLVVAK 534
           HRLDKGTSGLLVVAK
Sbjct: 216 HRLDKGTSGLLVVAK 230



 Score =  149 bits (375), Expect = 2e-33
 Identities = 72/91 (79%), Positives = 79/91 (86%)
 Frame = +2

Query: 668 SKDEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCN 847
           +KDEHSHAHLSEQFK HT++RVYISL+SGVPS  SGRI+VPI RD NNRIRMAAIPG   
Sbjct: 229 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 288

Query: 848 HRQVRHAGSRYKVIEVLGGGGAALVEWRLET 940
           H Q RHA SRYKVIE+L GGG+ALVEWRLET
Sbjct: 289 HGQARHAASRYKVIEILAGGGSALVEWRLET 319