BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00007037
         (2637 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...  1179   0.0  
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1167   0.0  
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]      1157   0.0  
ref|XP_007036161.1| RNA-dependent RNA polymerase 2 isoform 1 [Th...  1154   0.0  
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1148   0.0  
ref|XP_007211312.1| hypothetical protein PRUPE_ppa000513mg [Prun...  1140   0.0  
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici...  1133   0.0  
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu...  1131   0.0  
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...  1126   0.0  
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1124   0.0  
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1123   0.0  
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1122   0.0  
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]             1121   0.0  
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]             1120   0.0  
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis...  1119   0.0  
ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1102   0.0  
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li...  1102   0.0  
ref|XP_007155403.1| hypothetical protein PHAVU_003G198500g [Phas...  1092   0.0  
ref|XP_006286933.1| hypothetical protein CARUB_v10000076mg, part...  1088   0.0  
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...  1088   0.0  

>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score = 1179 bits (3051), Expect = 0.0
 Identities = 571/833 (68%), Positives = 686/833 (82%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK     KL YEILFQLN+LVH+QKISL AV+ DLIE+LS +  D+A  ILQ+L+K 
Sbjct: 273  VPLVKCESGPKLAYEILFQLNSLVHAQKISLAAVDTDLIEILSNLPVDTAIMILQKLHKR 332

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
            KST Y+P+SF++ Q   +  + K+LP SS +RL   N+M C+RV+VTPSK+YCLGPE+E+
Sbjct: 333  KSTRYDPISFIKAQAHIINMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELES 392

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SNY+V++YA + SDF+R+SF +EDW KL S+A+S SI    F+ P++T IYHR+LSILR+
Sbjct: 393  SNYVVKHYAAYASDFVRVSFVEEDWSKLPSNALSMSIRKAFFADPFRTEIYHRILSILRE 452

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRF+FLAFSASQLRS SVWMFASN  V   DIREWMGCFK IRSVSKCAARMGQ
Sbjct: 453  GIVIGAKRFQFLAFSASQLRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQ 512

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS QT  VP +D+E IPDIEVT+DG  YCFSDGIG+ISLSFAKQVAQKCGL + PSA
Sbjct: 513  LFSSSVQTLPVPVQDVEVIPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCGLHQTPSA 572

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGV+AVDRNSFRK+SLR SMLKF+S NRMLN+T WSES PCYLNREI+SLLS
Sbjct: 573  FQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFESQNRMLNVTKWSESTPCYLNREIVSLLS 632

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGVEDE F A+ +EQ+ LL+ ML +++AA  VLE   G D KN L +MLLQGYEP++EP
Sbjct: 633  TLGVEDENFEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKNILAKMLLQGYEPNVEP 692

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML+A+RE Q+SDIR++CRIFVPK RVL+GC+DETG L YG+VY+RV + +AE +CR
Sbjct: 693  YLSMMLQAYRESQLSDIRTRCRIFVPKARVLIGCLDETGILNYGQVYVRVTMTKAEHKCR 752

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
            +Q+F+Q VD+ T+V++GKV+VTKNPCLHPGDIRVL AVYE  LEEKGLVDCILFPQKGER
Sbjct: 753  NQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGER 812

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGD +F+CWDE LIP QT+APMDY +RRPRIMDH+VTLEEIQKFFVDYM
Sbjct: 813  PHPNECSGGDLDGDQFFICWDEGLIPSQTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYM 872

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            INDTLG+IS AHL+HADREPEKARS  CL LA LHSMAVDFAKTGAPAEMP VL+PKE+P
Sbjct: 873  INDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKPKEFP 932

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFMER D+  Y S G LGKLYR  +A+  N  S  + S  +   +YD +LEV+GFE FL+
Sbjct: 933  DFMERVDKPMYISNGALGKLYRATIASRVNEKSSFVWSGTIPGAAYDHDLEVDGFETFLE 992

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
             A+ HK+ YAEK + LMN++GA+SE+E+LTGNLRN+ MYLQ D ++++EMKDRIL+SVK 
Sbjct: 993  IAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQRDNRRFTEMKDRILISVKS 1052

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            LQKE   W   SCK  +  KMASAWYHV+YH  +     NFLSFPWIVG++LL
Sbjct: 1053 LQKEAKEWLYGSCKPHQHQKMASAWYHVTYHSTFSSQTPNFLSFPWIVGEVLL 1105


>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
          Length = 1131

 Score = 1167 bits (3018), Expect = 0.0
 Identities = 549/833 (65%), Positives = 692/833 (83%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK  P   L +E+LFQLN+LVH+QK+SLVA + +LI++L+G+S ++A  +LQ+L+KL
Sbjct: 289  VPLVKCRPGFNLSHEVLFQLNSLVHNQKVSLVAADAELIQILNGLSMETALMVLQKLHKL 348

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
            KS CY+P+SFV+ QL  L  + K +P SS  RL++ N+M CYR +VTP K+YCLGPE+ET
Sbjct: 349  KSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIYCLGPELET 408

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SNY+V+N+A++ SDF+R++F +EDW KL ++A+STSI+ G+F+ PY+T IY R+L+IL+D
Sbjct: 409  SNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFAKPYRTKIYSRILTILQD 468

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG K +EFLAFSASQLR+ SVWMFASN  V+A D+REWMGCF  I SVSKCAARMGQ
Sbjct: 469  GIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVREWMGCFNKIHSVSKCAARMGQ 528

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS+QT +VP +D+E IPD+EVT+DG  YCFSDGIG+ISLSFA+QVAQKCGLS  PSA
Sbjct: 529  LFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTPSA 588

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGV+AVDRNSFRK+SLR+SMLKF+S NRMLN+T WSES PC+LNREIISLLS
Sbjct: 589  FQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISLLS 648

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGV+D++F A+Q +Q+ LL  ML ++EAA  VL+  +G D KN L++MLLQGYEP++EP
Sbjct: 649  TLGVKDDVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNVEP 708

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML +H E Q+SD++S+CRI+VPKGR+L+GC DETG L YG+V++RV + R EL+ +
Sbjct: 709  YLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELESK 768

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
            DQ+F+  VD+KT+++ GKV+VTKNPCLHPGD+RVL+AVYE  LEEK  VDCI+FPQKGER
Sbjct: 769  DQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQKGER 828

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGD++F+ WD +LIP +T+ PMDY  RR RIMDH+VTLEEI KFFVDYM
Sbjct: 829  PHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFVDYM 888

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            INDTLG IS AHL+HADR+P+KARS  CL LA LHSMAVDFAKTGAPAEMP  L+PKE+P
Sbjct: 889  INDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPKEFP 948

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFMERED+  Y S GVLGKLYR  + ++  + S++I SEK+ + SYD +LEV+GFEAFL 
Sbjct: 949  DFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEAFLG 1008

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
             AESHK+ Y E+ +ALMNY+GA +E+EILTGNLRNR+ YLQ D ++Y +MKDRIL+S K 
Sbjct: 1009 VAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILLSAKN 1068

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            LQ E   WF  SCK +E  ++ASAWYHV+Y P+YC+     LSFPWIVGDILL
Sbjct: 1069 LQNEAKEWFGSSCKENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILL 1121


>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
          Length = 1115

 Score = 1157 bits (2993), Expect = 0.0
 Identities = 548/833 (65%), Positives = 683/833 (81%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPL+K P  S L YEILFQLN+LVH QKIS  + + DLIE    ++ D+AN ++Q+L+KL
Sbjct: 272  VPLIKCPAGSNLSYEILFQLNSLVHMQKISFASADADLIEYFGSLNIDTANAVIQKLHKL 331

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
            KSTCY+PLS  +     L  + K+ PSS+  RL E +LM C+R ++TPSK+YC+GPE+ET
Sbjct: 332  KSTCYDPLSLAKTYAHILEKNTKN-PSSAIKRLTENSLMSCHRALITPSKIYCMGPELET 390

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SNY+V+N+A + SDF+R++F +EDWGKL    +STSIE G+F+ PY+T IY R+LSILR+
Sbjct: 391  SNYVVKNFAAYASDFLRVTFVEEDWGKLHPHVVSTSIEQGIFAKPYRTGIYDRILSILRN 450

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GI+IG KR+EFLAFSASQLRS +VWMFASN  V A DIREWMGCF  IRSVSKCAARMGQ
Sbjct: 451  GILIGAKRYEFLAFSASQLRSSAVWMFASNDNVKAEDIREWMGCFNKIRSVSKCAARMGQ 510

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSSRQT IVP +D+E IPD+EVTTDG++YCFSDGIG+IS SFA+QVAQKCGL E PSA
Sbjct: 511  LFSSSRQTLIVPTQDLEIIPDVEVTTDGIDYCFSDGIGKISSSFARQVAQKCGLKETPSA 570

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGV+AV+R+SFRK+SLR SMLKF+S+NRMLN+T WS S PCYLNREI+SLLS
Sbjct: 571  FQIRYGGYKGVIAVNRSSFRKLSLRSSMLKFESSNRMLNVTKWSGSMPCYLNREIVSLLS 630

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            +LGV+DE FLA+  EQ+ LL  M  ++EAA  VLE  +G D  N L++MLLQGYEP+ EP
Sbjct: 631  SLGVKDESFLALLREQLLLLGKMRTNREAALNVLENLNGSDSSNILVKMLLQGYEPNAEP 690

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MM++++ E Q+SD++++CRIFVPKG+VL+GC+DETG L YG+VY+R+ +K+AEL+  
Sbjct: 691  YLSMMIQSYYENQLSDLKTRCRIFVPKGKVLIGCLDETGILEYGQVYVRLTMKKAELEAG 750

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
            +Q+F++ VD++T+++VGKVVVTKNPCLHPGD+RVL+AVY+  LEE+GLVDC++FPQKGER
Sbjct: 751  NQSFFRKVDDETSIVVGKVVVTKNPCLHPGDVRVLEAVYDAKLEEEGLVDCLVFPQKGER 810

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGDL+F+ WD NLIPP+T APMDY+ RRPRIMDH+VTLEEIQKFFVDYM
Sbjct: 811  PHPNECSGGDLDGDLFFISWDTNLIPPRTTAPMDYIGRRPRIMDHDVTLEEIQKFFVDYM 870

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            INDTLG IS AHLIHADREPEKA S NCL+LA LHSMAVDFAKTGAPAEMP  LRP++YP
Sbjct: 871  INDTLGGISTAHLIHADREPEKAFSENCLQLATLHSMAVDFAKTGAPAEMPRALRPRDYP 930

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFMER DR  Y S G LGKLYR  + +     S+ + SEK  + +YD +LEVNGFE F+ 
Sbjct: 931  DFMERLDRPMYVSNGALGKLYRATVESESQGSSNLVWSEKTAEAAYDRDLEVNGFEEFIA 990

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
             AESH+  Y +K + +MNY+  +SE+E+LTGNLR R+ YLQ D ++Y E+KDRIL++VK 
Sbjct: 991  LAESHRDMYIDKMNGIMNYYELESEDEVLTGNLRKRAAYLQRDNRRYFEVKDRILLAVKS 1050

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            LQ+E   WF+ SC+  E+ KMASAWYHV+YHPNY +   N LSFPWI GDILL
Sbjct: 1051 LQREAKGWFEGSCEAMEQQKMASAWYHVTYHPNYYQKSINCLSFPWIKGDILL 1103


>ref|XP_007036161.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
            gi|590663258|ref|XP_007036162.1| RNA-dependent RNA
            polymerase 2 isoform 1 [Theobroma cacao]
            gi|508773406|gb|EOY20662.1| RNA-dependent RNA polymerase
            2 isoform 1 [Theobroma cacao] gi|508773407|gb|EOY20663.1|
            RNA-dependent RNA polymerase 2 isoform 1 [Theobroma
            cacao]
          Length = 1149

 Score = 1154 bits (2985), Expect = 0.0
 Identities = 551/834 (66%), Positives = 687/834 (82%), Gaps = 1/834 (0%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK P DSKL YEILFQLN+LVH+QKIS+ +V+ DLI++L  ++ ++A  ILQ+ +KL
Sbjct: 281  VPLVKGPSDSKLAYEILFQLNSLVHTQKISIASVDTDLIDILRVLAVETAVMILQKFHKL 340

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
             STCY P+SFV+  L     + +  P SS  RL++ N+M C+R +VTPSK+YCLGPE+ET
Sbjct: 341  LSTCYNPVSFVKENLPVSERNFQSRPLSSFKRLIDHNVMSCHRALVTPSKIYCLGPELET 400

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SNY+V+N+AE+ SDF+R+SF +EDWGKL ++AISTS++ G+FS P++T IYHR+LS+L+ 
Sbjct: 401  SNYVVKNFAEYASDFMRVSFVEEDWGKLSANAISTSVQLGIFSKPFRTKIYHRILSVLQH 460

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRFEFLAFSASQLRS SVWMFASN  V A D+REWMGCFK IRSVSKCAARMGQ
Sbjct: 461  GIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVTAEDVREWMGCFKKIRSVSKCAARMGQ 520

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS  T +VP +D++ IPDIEVT+DG+NYCFSDGIG+ISL FA++VAQKCGL++ PSA
Sbjct: 521  LFSSSLPTLVVPVQDVKIIPDIEVTSDGINYCFSDGIGKISLPFAREVAQKCGLNDTPSA 580

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGVVAVDRNSFRKMSLR SM KF+S  RMLN+T WSES PC+LNREI++LLS
Sbjct: 581  FQIRYGGYKGVVAVDRNSFRKMSLRGSMHKFESKIRMLNVTKWSESMPCFLNREIVTLLS 640

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLG++DE F  +Q EQ+ LL  ML ++EAA  VL+   G D +N L++MLLQGYEP++EP
Sbjct: 641  TLGIKDEAFETLQQEQLHLLGQMLTNREAALDVLQSLCGADSQNILVKMLLQGYEPNVEP 700

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML A+    +SD++ +CRI+VPKG+VL+GC+DET TL YG+VY+R+++K+AEL+  
Sbjct: 701  YLSMMLLANHVSLLSDLKCRCRIYVPKGQVLVGCLDETATLNYGQVYVRLSIKKAELEHA 760

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
            DQ F+  VDEKTA+++GKVVVTKNPCLHPGD+RVL+AVYE  LE+KGLVDC++FPQKGER
Sbjct: 761  DQNFFHKVDEKTAIVIGKVVVTKNPCLHPGDVRVLEAVYEAELEDKGLVDCLVFPQKGER 820

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGD +F+ WD++LIP QTDAPMDY   RPRIMDHEVTLEEIQKFFVDYM
Sbjct: 821  PHPNECSGGDLDGDQFFISWDKDLIPCQTDAPMDYTGSRPRIMDHEVTLEEIQKFFVDYM 880

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            INDTLG IS AHL+HADREP+KARS  CL LA LHSMAVDFAKTGAPAEMP  L+P+E+P
Sbjct: 881  INDTLGAISTAHLVHADREPDKARSEKCLELATLHSMAVDFAKTGAPAEMPRSLKPREFP 940

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFM+R D+  Y S GVLGKLYR  + +     S  + S+KM +  YD +LEVNGFEAFL 
Sbjct: 941  DFMQRVDKPMYASLGVLGKLYRATINSTVQERSKFVWSKKMAEALYDHDLEVNGFEAFLS 1000

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
            +A++HK  Y EK S LMNY+  +SE+EILTGN+RN++ +LQ D ++Y +MKDRIL+S+K 
Sbjct: 1001 TAQTHKDMYEEKMSFLMNYYEVESEDEILTGNMRNKATFLQRDNRRYGDMKDRILLSMKN 1060

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYC-ENGTNFLSFPWIVGDILL 138
            LQ+E    F+ SCK+ E  ++ASAWYHV+YHPNYC E+  + LSFPWIVGDILL
Sbjct: 1061 LQREARERFENSCKVGEHQRLASAWYHVTYHPNYCQESMKSCLSFPWIVGDILL 1114


>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
            vesca]
          Length = 1136

 Score = 1148 bits (2970), Expect = 0.0
 Identities = 552/834 (66%), Positives = 679/834 (81%), Gaps = 1/834 (0%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK   D K  YEILFQLN LVH+QKISL AV +DLIE   G+S D+AN +L++L KL
Sbjct: 277  VPLVKCEADMKFPYEILFQLNVLVHAQKISLAAVGSDLIEFFGGLSMDTANVLLEKLQKL 336

Query: 2456 KSTCYEPLSFVQHQLESL-RGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVE 2280
            K+TCY+PLSFV+ QL+ L R  +K L  S   RLME N+M C+RV++TPSK+YCLGPE+E
Sbjct: 337  KTTCYDPLSFVKVQLQLLERNSKKRL--SPHQRLMEHNVMSCHRVLITPSKIYCLGPELE 394

Query: 2279 TSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILR 2100
             SNY+V+N+A++ SDF+R++F +EDWGKL  +A+STSIE G F+ P++T IY R+LSILR
Sbjct: 395  KSNYVVKNFAQYASDFMRVTFVEEDWGKLPVNALSTSIEQGFFAKPFRTGIYQRILSILR 454

Query: 2099 DGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMG 1920
            DGIVIG KRFEFLAFSASQLRS SVWMFASN +V A DIR+WMGCF  IRSVSKCAARMG
Sbjct: 455  DGIVIGDKRFEFLAFSASQLRSNSVWMFASNDSVKAEDIRDWMGCFNKIRSVSKCAARMG 514

Query: 1919 QLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPS 1740
            QLFSSS QT  VP +D+E IPDIE TTDG++YCFSDGIG+ISLSFA+QVAQKCGL++ PS
Sbjct: 515  QLFSSSTQTLTVPQKDVELIPDIETTTDGVSYCFSDGIGKISLSFARQVAQKCGLNDTPS 574

Query: 1739 AFQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLL 1560
            AFQIRYGGYKGV+AVDRNSFRK+SLR SMLKFDS+NRMLN+T WS S PC+LNREII+L+
Sbjct: 575  AFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFDSDNRMLNVTKWSSSMPCFLNREIITLM 634

Query: 1559 STLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSME 1380
            STLGVEDE F A+Q EQ+ LL  M  D+  A   LE  SG D  N L+++LLQGYEP++E
Sbjct: 635  STLGVEDEAFEALQQEQLDLLGRMRKDRNVALSSLEKLSGADSNNILVKLLLQGYEPNLE 694

Query: 1379 PFLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQC 1200
            P+L MML+AH E+ ++D++S+CR++VPKGR+L+GC+DETGTL YG+VY+R+ + +AE + 
Sbjct: 695  PYLSMMLQAHYEHHLADLKSRCRMYVPKGRILVGCLDETGTLNYGQVYLRITMTKAEQEM 754

Query: 1199 RDQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGE 1020
              Q+F+Q VDE T ++ GKVVVTKNPCLHPGDIRVL+AVY+  LEEK +VDCILFPQKGE
Sbjct: 755  GHQSFFQRVDEATCIVTGKVVVTKNPCLHPGDIRVLEAVYDVGLEEKNMVDCILFPQKGE 814

Query: 1019 RPHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDY 840
            RPHPNECSGGDLDGDL+F+ WD++LIPP T  PMDY ARRPR MDH+VTLEEIQKFFVDY
Sbjct: 815  RPHPNECSGGDLDGDLFFISWDKSLIPPTTVPPMDYSARRPRNMDHDVTLEEIQKFFVDY 874

Query: 839  MINDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEY 660
            MIND LG IS AHL+H+D EPEKA S  CL LA+LHSMAVDFAKTGAPAE+  +L+PKE+
Sbjct: 875  MINDNLGAISTAHLVHSDHEPEKAMSKKCLELADLHSMAVDFAKTGAPAELSWILKPKEF 934

Query: 659  PDFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFL 480
            PDFMER +R  Y S G LGKLYR   ++V    +  + S++  + +YD ELEV GFE+FL
Sbjct: 935  PDFMERVERPMYISNGALGKLYRAIRSSVVQEQTIVVWSQQRAEEAYDRELEVQGFESFL 994

Query: 479  DSAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVK 300
            + AESH+  Y EK  +LMNY+ A +E+EILTGNLRNR+ YLQ D ++Y ++KDRIL+S+K
Sbjct: 995  EMAESHRDKYIEKMRSLMNYYEATTEDEILTGNLRNRAAYLQRDNRRYFDLKDRILLSLK 1054

Query: 299  GLQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
             LQKE   WF+ SCK+ E+ ++ASAWYHV+Y+  Y +   N LSFPWIVGDILL
Sbjct: 1055 TLQKEAKGWFESSCKVSEQQRLASAWYHVTYNLAYFQEDMNCLSFPWIVGDILL 1108


>ref|XP_007211312.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
            gi|462407047|gb|EMJ12511.1| hypothetical protein
            PRUPE_ppa000513mg [Prunus persica]
          Length = 1118

 Score = 1140 bits (2950), Expect = 0.0
 Identities = 545/833 (65%), Positives = 676/833 (81%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK   DSKL YEILFQLNALVHSQKISL A ++DLIE LSG+S D+ N +L++L+K 
Sbjct: 275  VPLVKCRSDSKLPYEILFQLNALVHSQKISLAATDSDLIEFLSGLSVDTTNVLLEKLHKR 334

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
            K+TCY+PLSF++ QL  L  + K  PS    RLME N+M C+RV++TPSK+ CLGPE+E 
Sbjct: 335  KTTCYDPLSFLKMQLHVLERNHKSRPSPYK-RLMEHNVMSCHRVLITPSKICCLGPELEK 393

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SNY+V+N+A + SDF+R++F DEDW KL ++AISTSI+ G+F+ P++T IYHR+LSILRD
Sbjct: 394  SNYVVKNFAAYASDFMRVTFVDEDWSKLPANAISTSIQQGIFAKPHRTGIYHRMLSILRD 453

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRFEFLAFSASQLRS SVWMF+SN  V A DIREWMGCF  IRS+SKCAARMGQ
Sbjct: 454  GIVIGEKRFEFLAFSASQLRSSSVWMFSSNDNVKAEDIREWMGCFSKIRSISKCAARMGQ 513

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS QT +VPA+D+E IPD+E ++DG+ YCFSDGIG+ISLSFA++VAQKCGL + PSA
Sbjct: 514  LFSSSTQTLVVPAQDVEIIPDVETSSDGVTYCFSDGIGKISLSFARKVAQKCGLDQTPSA 573

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGV+AVD  SFRK+SLR SMLKF+S NRMLN+T WS++ PCYLNREIISLLS
Sbjct: 574  FQIRYGGYKGVIAVDCRSFRKLSLRSSMLKFESKNRMLNVTKWSDAMPCYLNREIISLLS 633

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGV+DE F A+Q EQ++LL  M  ++ AA  V E  +G D KN L++MLL GYEP+ EP
Sbjct: 634  TLGVKDETFEALQEEQLRLLGKMRTERGAALNVFERLNGADSKNTLVKMLLHGYEPNAEP 693

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML+A+ E  +SD++S+CRIFVPKGRVL+GC+DETG L YG+VY+R+ + +AE +  
Sbjct: 694  YLSMMLQAYYENHLSDLKSRCRIFVPKGRVLVGCLDETGNLDYGQVYVRITMTKAEQEMG 753

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
            DQ+F+Q VDE T V+ GKVVVTKNPCLHPGD+RVL AVY+ +LEEK +VDC++FPQKGER
Sbjct: 754  DQSFFQKVDETTLVVTGKVVVTKNPCLHPGDVRVLDAVYDVVLEEKNMVDCLIFPQKGER 813

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGDL+F+ WD++L+P  T  PMDY ARRPRIMDH VTLEEIQKFFVDYM
Sbjct: 814  PHPNECSGGDLDGDLFFISWDKDLVPSHTVPPMDYSARRPRIMDHTVTLEEIQKFFVDYM 873

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            IND LG IS AHL+HAD EP+KA +P CL+LA+LHSMAVDFAKTGAPAEM   L+PKE+P
Sbjct: 874  INDNLGAISTAHLVHADHEPDKALNPKCLQLADLHSMAVDFAKTGAPAEMSRTLKPKEFP 933

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFMER D+  Y S G LGKLYR  + +V    ++ + SE++ + +YD +LEV+G E+ L+
Sbjct: 934  DFMERVDKPMYISNGALGKLYRAVVGSVLQEKTNLVWSEQIAEAAYDQDLEVDGLESVLE 993

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
             A+ H+  Y EK   +MNY+GA +E+EILTGNLRNR+ YLQ D ++Y +MKDRI +S+K 
Sbjct: 994  VAKGHRDMYIEKMRTMMNYYGAVTEDEILTGNLRNRAAYLQRDNRRYGDMKDRISLSLKN 1053

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            LQKE    F+ SC + E  +MASAWYHV+YHP+Y +   N LSFPWIVGDILL
Sbjct: 1054 LQKEAKGLFESSCPVSEHQRMASAWYHVTYHPSYFQQDMNCLSFPWIVGDILL 1106


>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 983

 Score = 1133 bits (2930), Expect = 0.0
 Identities = 541/833 (64%), Positives = 674/833 (80%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK   DSKL YEILFQLN+LVH+QKISL AV+ +LI  L  ++ D+A  ILQ+L+KL
Sbjct: 123  VPLVKCGSDSKLPYEILFQLNSLVHTQKISLAAVDTNLITTLGSLTIDTATMILQKLHKL 182

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
              TCY+PL+F++ QL     + K    SS+  L+  N+M C+R ++TPSK+YCLGPE+E+
Sbjct: 183  AVTCYDPLAFIKKQLHVPGRNLKRPFFSSSKNLVNHNIMSCHRALITPSKIYCLGPELES 242

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SNY+V+N+A + SDF+R++F +EDW KL ++AIS SI+ G+F+ P++T IYHR+LSILRD
Sbjct: 243  SNYVVKNFASYASDFMRVTFVEEDWSKLPANAISMSIQRGIFAKPFRTGIYHRILSILRD 302

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG K+FEFLAFSASQLRS SVWMFASN    A +IREWMGCF  I S+SKCAARMGQ
Sbjct: 303  GIVIGAKKFEFLAFSASQLRSNSVWMFASNDKKKAEEIREWMGCFNKIHSISKCAARMGQ 362

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS+QTFIV  +D+E IPDIEVT+DG+NYCFSDGIG+ISLSFA+QVAQKCGL+  PSA
Sbjct: 363  LFSSSKQTFIVSPQDMEIIPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCGLNRTPSA 422

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGV+AVDRNSFRK+SLR SM KF+S NRMLN+T WSES PCYLNREII+LL+
Sbjct: 423  FQIRYGGYKGVIAVDRNSFRKLSLRDSMCKFESENRMLNVTKWSESMPCYLNREIITLLT 482

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGV+DE+F  +Q +Q++LLN ML ++E+A  VLE  +  + KN L++ML+QGYEP++EP
Sbjct: 483  TLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILIKMLVQGYEPNVEP 542

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML+A+ E  + ++RS+CRIFVPKGR+L+GC+DET  L YG+VY+R+ + +AELQ  
Sbjct: 543  YLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAELQDA 602

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
            DQ  +  VDE TAV+ GKV+VTKNPCLHPGDIRVL+AVYE  LEEKGLVDCILFPQKGER
Sbjct: 603  DQASFHRVDETTAVVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQKGER 662

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGD +F+ WD+ LIP +T++PMDY  RRPR MDH+VTLEEIQKFF+DYM
Sbjct: 663  PHPNECSGGDLDGDQFFISWDKGLIPGETESPMDYQGRRPRKMDHDVTLEEIQKFFIDYM 722

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            INDTLG IS AHL+HADREP+KARS  CL+LA LHSMAVDFAKTGAPAEMP  L+PKE+P
Sbjct: 723  INDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKPKEFP 782

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFMER D+  Y S GVLGKLYR  + +     S  + +E + + +YD +LEV GFE F++
Sbjct: 783  DFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKFVWTENIAEATYDHDLEVKGFEEFVE 842

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
             A SHK  Y EK S LM+Y+ A  E+EILTGNL+N++MYLQ D ++Y + KDRIL+SVK 
Sbjct: 843  IAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKDRILISVKS 902

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            LQKE   WF+  C+  E+ ++ASAWYHV+YHP+Y + G   LSFPWIV DILL
Sbjct: 903  LQKEAKEWFESCCQAKEKQRLASAWYHVTYHPSYFQEGITCLSFPWIVADILL 955


>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| hypothetical protein
            POPTR_0015s08500g [Populus trichocarpa]
          Length = 1110

 Score = 1131 bits (2925), Expect = 0.0
 Identities = 553/834 (66%), Positives = 672/834 (80%), Gaps = 1/834 (0%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPL++   D KL YE+LFQLN+LVH+QKISL AV++DLI++L  ++ ++A  ILQ+L+KL
Sbjct: 276  VPLIRCGSD-KLAYEVLFQLNSLVHTQKISLAAVDSDLIKILRNLTVNTAIIILQKLHKL 334

Query: 2456 KSTCYEPLSFVQHQL-ESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVE 2280
            K TCY+PLSFV+  L ESL        SS    L E N+M C+R ++TPSK++CLGPE E
Sbjct: 335  KMTCYDPLSFVKQSLRESL--------SSPPKSLTENNIMSCHRALITPSKIFCLGPEYE 386

Query: 2279 TSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILR 2100
            TSNY+V+++A++ SDFIR++F +EDW KL ++AISTSI+ G+F+ P++T IYHR+LSILR
Sbjct: 387  TSNYVVKHFAQYASDFIRVTFVEEDWSKLPANAISTSIQRGIFAKPFRTGIYHRILSILR 446

Query: 2099 DGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMG 1920
            DG VIG KRFEFLAFSASQLRS SVWMFASN  V A DIR+WMGCF  IRSVSKCAARMG
Sbjct: 447  DGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAARMG 506

Query: 1919 QLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPS 1740
            QLFSSS QTF+VP +D+E IPDIEVTTDG++YCFSDGIG+ISLSFAKQVA KCGLS  PS
Sbjct: 507  QLFSSSLQTFVVPVQDVEIIPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGLSHTPS 566

Query: 1739 AFQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLL 1560
            AFQIRYGGYKGVVAVDRNSFRK+SLR SMLKFDS NRMLN+T WSES PCYLNREIISLL
Sbjct: 567  AFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFDSENRMLNVTKWSESMPCYLNREIISLL 626

Query: 1559 STLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSME 1380
            STLGV DE+F A+Q +Q+  L  ML +KE+A  VLE  +  D KN L+QMLLQGYEP++E
Sbjct: 627  STLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWADSKNILVQMLLQGYEPNVE 686

Query: 1379 PFLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQC 1200
            P+L MML+A+ E  + ++RS+CRIFVPKGR+L+GC+DE+G L YG+VY+R+ + +AELQC
Sbjct: 687  PYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDESGILDYGQVYVRITMTKAELQC 746

Query: 1199 RDQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGE 1020
             DQ+F++ VDE T+ I+G+V VTKNPCLHPGDIRVL+AVY+  LEEKGLVDCI+FPQ G 
Sbjct: 747  CDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVDCIIFPQNGG 806

Query: 1019 RPHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDY 840
            RPHPNECSGGDLDGD +F+ WDE L+P  T+APMDYV  R RIMDH VTLEEIQ+FFVDY
Sbjct: 807  RPHPNECSGGDLDGDQFFISWDEGLLPCHTEAPMDYVGGRQRIMDHNVTLEEIQRFFVDY 866

Query: 839  MINDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEY 660
            MINDTLG IS AHL+HAD EP+KARS  CL+LA LHSMAVDFAKTGAPAEMP  L+P+E+
Sbjct: 867  MINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVDFAKTGAPAEMPLYLKPREF 926

Query: 659  PDFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFL 480
            PDFMER ++  Y S GVLGKLYR    +     S+ + S+K+ + +YD +LEV GFE FL
Sbjct: 927  PDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKKIAEATYDQDLEVKGFEDFL 986

Query: 479  DSAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVK 300
              A  +K+ Y EK S LM+Y+GA +E+EILTGNLR+R  YLQ D +KY ++KDRILVS+K
Sbjct: 987  GIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQRDNRKYGDVKDRILVSLK 1046

Query: 299  GLQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
             L+KE   WF+ SC   E   MASAWYHV+YHP Y     N LSFPWIVGDILL
Sbjct: 1047 NLKKEAKEWFESSCNPTEHQCMASAWYHVTYHPTYFHERMNCLSFPWIVGDILL 1100


>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score = 1126 bits (2912), Expect = 0.0
 Identities = 545/833 (65%), Positives = 668/833 (80%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPL   P D KL YEILFQLN+L+H+ KISL AV  DLIE+LS +  D+A  ILQ+++KL
Sbjct: 276  VPLASFPSDLKLPYEILFQLNSLIHTHKISLGAVKTDLIEVLSKLELDTAMMILQKMHKL 335

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
            +STC+EP+ F++ +L  L  + K+ PSSS +RL+ QN+M  +RV+VTPSKVYCLGPE+ET
Sbjct: 336  QSTCFEPVPFIKTRLHVLGKNSKNQPSSSYSRLVNQNMMSVHRVLVTPSKVYCLGPELET 395

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SNYIV+N+A H SDF+R++F +EDWGKL  +AIS S+E G+F+ PY+T IYHR+LSILRD
Sbjct: 396  SNYIVKNFALHASDFLRVTFVEEDWGKLSPNAISMSVEQGIFAKPYRTKIYHRILSILRD 455

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            G+VIG KRF FLAFSASQLRS SVWMFASN  V A DIREWMGCF  IRSVSKCAARMGQ
Sbjct: 456  GLVIGSKRFLFLAFSASQLRSNSVWMFASNEHVKAEDIREWMGCFNKIRSVSKCAARMGQ 515

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFS+S QT  V +  +E +PDIEVT+DG++YCFSDGIG+IS +FA QVAQKCGLS  PSA
Sbjct: 516  LFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCGLSYTPSA 575

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGV+AVDRNSFRK+SLR SMLKF+S NRMLNIT WS++ PCYLNREI+ LLS
Sbjct: 576  FQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCYLNREIVILLS 635

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGVED++F  +    + LL  ML   EAA  VLE   G D+K  L++ML QGY P++EP
Sbjct: 636  TLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDVLESIGGGDVKKILMRMLHQGYAPNLEP 695

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML++H E Q+SD+RS+CRIF+ KGRVL+GC+DETG L YG+VY R+ + +AELQ  
Sbjct: 696  YLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVGCLDETGILNYGQVYARITMTKAELQSA 755

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
             Q+F+Q VDE TAV+ G VVVTKNPCLHPGD+RVL+AVYE  LEEK  VDCI+FPQKGER
Sbjct: 756  QQSFFQKVDETTAVVRGNVVVTKNPCLHPGDVRVLEAVYEVALEEKAWVDCIIFPQKGER 815

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGDLYF+ WDENLIP QT  PMDY  RR RIMDHEVTL+EIQ+FFVDYM
Sbjct: 816  PHPNECSGGDLDGDLYFISWDENLIPRQTVTPMDYTGRRTRIMDHEVTLQEIQRFFVDYM 875

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            I+DTLG IS AHL+HADREP+KA +P CL+LA LHSMAVDFAKTGA AEMP  L+P+E+P
Sbjct: 876  ISDTLGAISTAHLVHADREPDKALNPKCLQLATLHSMAVDFAKTGAAAEMPRFLKPREFP 935

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DF+ER D+  Y S GVLGKLYR  + +    +S  + S +  + +YD  L  +G+EAF++
Sbjct: 936  DFLERWDKPMYISEGVLGKLYRAIVNSSVRSNSDDLGSVRAIQDAYDHALLFDGYEAFIE 995

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
            +A++HK+ Y ++ ++L+NY+GA+ E EILTGNLR +S+YLQ D ++Y E+KDRILVS K 
Sbjct: 996  TAKNHKETYLDRMNSLLNYYGAEKEVEILTGNLRQKSVYLQRDNRRYFELKDRILVSAKS 1055

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            LQKEV  WF   CK DE  K+ASAWYHV+YHP+YCE   N L FPW+VGDILL
Sbjct: 1056 LQKEVKGWFTGCCKEDEHKKLASAWYHVTYHPSYCEGSANCLGFPWVVGDILL 1108


>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
          Length = 1119

 Score = 1124 bits (2908), Expect = 0.0
 Identities = 541/833 (64%), Positives = 669/833 (80%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLV+ P D KL YEILFQLN+LV +QKISL AVN DLIE+LS +  D+A  ILQ+++KL
Sbjct: 275  VPLVRIPSDLKLPYEILFQLNSLVQTQKISLGAVNPDLIEVLSKLELDTAMMILQKMHKL 334

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
            +STC+EPL+F++ +L  L  + K+  SSS +RL+  ++M  +RV+VTPSK+YCLGPE+ET
Sbjct: 335  QSTCFEPLTFIKTRLHVLGKNNKNQLSSSYSRLVNHSMMSVHRVLVTPSKIYCLGPELET 394

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SNYIV+N+AEH SDF+R++F +EDWGKL  +A+S S+E G+F+ PY+T IYHR+LSILR+
Sbjct: 395  SNYIVKNFAEHASDFLRVTFVEEDWGKLFPNAVSMSVEQGIFAKPYRTKIYHRILSILRE 454

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRF FLAFSASQLRS SVWMFASN  V A DIREWMGCF  IRS+SKCAARMGQ
Sbjct: 455  GIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVKAEDIREWMGCFNKIRSISKCAARMGQ 514

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFS+S QT  V  + +E +PDIEVT+DG++YCFSDGIG+IS +FA+QVAQKCGL+  PSA
Sbjct: 515  LFSTSVQTMEVQLQHVEILPDIEVTSDGVSYCFSDGIGKISQAFARQVAQKCGLNHTPSA 574

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGV+AVDRNSFRK+SLR SMLKF+S NRMLNIT WS++ PCYLNREI+ LLS
Sbjct: 575  FQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCYLNREIVILLS 634

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGVED+    +    ++LL  ML   EAA  VLE   G D+K  L++MLLQGY P+ EP
Sbjct: 635  TLGVEDKALEDLLDNHLRLLGKMLTTNEAALDVLESMGGGDVKKILMRMLLQGYAPNREP 694

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML++H E QISD+RS+CRIF+PKGR+L+GC+DETG L YG VY+R+ + +AELQ  
Sbjct: 695  YLSMMLQSHFENQISDLRSRCRIFIPKGRILVGCLDETGILKYGEVYVRITMTKAELQNG 754

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
             Q F+Q VDE TAV+ GKVVVTKNPCLHPGD+RVL+AVYE  LEEK  VDCI+FPQ GER
Sbjct: 755  QQNFFQKVDETTAVVRGKVVVTKNPCLHPGDVRVLEAVYEVTLEEKTWVDCIIFPQNGER 814

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGDLYF+CWDE+LIP QT  PMDY  RRPRIMDHEVTLEEIQ+FFVDYM
Sbjct: 815  PHPNECSGGDLDGDLYFICWDESLIPHQTVTPMDYTGRRPRIMDHEVTLEEIQRFFVDYM 874

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            I+DTLG IS AHL+HADREP+KA +  CL+LA LHSMAVDFAKTGA AEMP  L+P+E+P
Sbjct: 875  ISDTLGAISTAHLVHADREPDKALNSKCLQLATLHSMAVDFAKTGAAAEMPRFLKPREFP 934

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFMER D+  Y S GVLGKLYR  + +    +S  + +++  + +YD +L V G+EAF++
Sbjct: 935  DFMERWDKPMYISEGVLGKLYRGVIKSYIRRNSDDLSTDRAIQDAYDHDLLVEGYEAFIE 994

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
            +A++HK+ Y +  ++L+NY+GA+ E EILTGNLR +S+YLQ D ++Y E+KDRILVS K 
Sbjct: 995  TAKTHKEMYLDSMNSLLNYYGAEKEVEILTGNLRQKSVYLQRDNRRYFELKDRILVSAKS 1054

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            L KEV  WF   C  D+  K+ SAWYHV+YHP+YC    N L FPW+VGDILL
Sbjct: 1055 LHKEVKGWFSGCCTEDDHQKLVSAWYHVTYHPSYCHESANCLGFPWVVGDILL 1107


>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
          Length = 1119

 Score = 1123 bits (2904), Expect = 0.0
 Identities = 540/833 (64%), Positives = 669/833 (80%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLV+ P D KL YEILFQLN+LV +QKISL A+N +LIE+LS +  D+A  ILQ+++KL
Sbjct: 275  VPLVRIPSDLKLPYEILFQLNSLVQTQKISLGAINPNLIEVLSKLELDTAMMILQKMHKL 334

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
            +S C++PL F++ +L  L  + K+ PSSS +RL+  ++M  +RV+VTPSK+YCLGPE+ET
Sbjct: 335  QSICFDPLLFIKTRLHVLGKNNKNRPSSSYSRLVNHSMMSVHRVLVTPSKIYCLGPELET 394

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SNYIV+N+A H SDF+R++F +EDWGKL  +A+S S+E G+F+ PY+T IYHR+LSILR+
Sbjct: 395  SNYIVKNFASHASDFLRVTFVEEDWGKLFPNAVSMSVEQGIFAKPYRTKIYHRILSILRE 454

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRF FLAFSASQLRS SVWMFASN  V A DIREWMGCF  IRS+SKCAARMGQ
Sbjct: 455  GIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVKAEDIREWMGCFNKIRSISKCAARMGQ 514

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFS+S QT  V  + +E +PDIEVT+DG++YCFSDGIG+IS +FA+QVAQKCGL+  PSA
Sbjct: 515  LFSTSVQTMEVKLQHVEILPDIEVTSDGVSYCFSDGIGKISQAFARQVAQKCGLNHTPSA 574

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGV+AVDRNSFRK+SLR SMLKF+S NRMLNIT WS++ PCYLNREI+ LLS
Sbjct: 575  FQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCYLNREIVILLS 634

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGVED+ F  +    + LL  ML   EAA  VLE   G ++K  L++MLLQGY P+ EP
Sbjct: 635  TLGVEDKAFEDLLDNHLCLLGKMLTTNEAALDVLESMGGGEVKKILMRMLLQGYAPNQEP 694

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML++H E QISD+RS+CRIF+PKGR+L+GC+DETG L YG+VY+R+ + +AELQ  
Sbjct: 695  YLSMMLQSHFENQISDLRSRCRIFIPKGRILVGCLDETGILKYGQVYVRITMTKAELQNG 754

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
             Q F+Q VDE TAV+ GKVVVTKNPCLHPGD+RVL+AVYE  LEEK  VDCI+FPQKGER
Sbjct: 755  QQNFFQKVDETTAVVRGKVVVTKNPCLHPGDVRVLEAVYEVTLEEKTWVDCIIFPQKGER 814

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGDLYF+CWDE+LIP QT  PMDY  RRPRIMDHEVTLEEIQ+FFVDYM
Sbjct: 815  PHPNECSGGDLDGDLYFICWDESLIPCQTVTPMDYTGRRPRIMDHEVTLEEIQRFFVDYM 874

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            I+DTLG IS AHL+HADREP+KA +  CL+LA LHSMAVDFAKTGA AEMP  L+P+E+P
Sbjct: 875  ISDTLGAISTAHLVHADREPDKALNSKCLQLATLHSMAVDFAKTGAAAEMPRFLKPREFP 934

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFMER D+  Y S GVLGKLYR  M +    +S  + +++  + +YD +L V G+EAF +
Sbjct: 935  DFMERWDKPMYISEGVLGKLYRGVMKSYIRRNSDDLSADRAIQDAYDHDLLVEGYEAFTE 994

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
            +A++HK  Y +  ++L+NY+GA+ E EILTGNLR +S+YLQ D ++Y E+KDRILVS K 
Sbjct: 995  TAKTHKAMYLDSMNSLLNYYGAEKEVEILTGNLRQKSVYLQRDNRRYFELKDRILVSAKS 1054

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            L KEV  WF   C+ D+  K+ASAWYHV+YHP+YC    N L FPW+VGDILL
Sbjct: 1055 LHKEVKGWFTSCCQEDDHQKLASAWYHVTYHPSYCHESANCLGFPWVVGDILL 1107


>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
          Length = 1122

 Score = 1122 bits (2902), Expect = 0.0
 Identities = 541/837 (64%), Positives = 679/837 (81%), Gaps = 4/837 (0%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK   D+KL YE LFQLN+LVH+QKISL +V+++LI++++ +  ++   I Q+L+K+
Sbjct: 276  VPLVKCRLDTKLPYEALFQLNSLVHTQKISLASVDDELIDLIASLDDETKAVIFQKLHKM 335

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
             STCYEPL FV+ QL  L   +K L  SS  RL + N+M C+R ++TPSK+YCLGPE+ET
Sbjct: 336  SSTCYEPLRFVKTQLHVLSIKKKSLRPSSQKRLADNNIMSCHRALITPSKIYCLGPELET 395

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SN++V+++A + SDF+R++F +EDW KL  +A+STS++ G+F+ P++T IY RVL+ILRD
Sbjct: 396  SNHVVKHFASYASDFMRITFVEEDWSKLPINAVSTSLQKGIFAKPFRTDIYKRVLTILRD 455

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRFEFLAFSASQLRS SVW+FASN  V A DIREWMG F NIRSVSKCAARMGQ
Sbjct: 456  GIVIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAEDIREWMGSFTNIRSVSKCAARMGQ 515

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGL--SEVP 1743
            LFSSS+QTF +  +D++ IPDIE+T+DG+NYCFSDGIG+ISLSFAKQ+AQK  L  S +P
Sbjct: 516  LFSSSKQTFEMAPQDVDIIPDIELTSDGINYCFSDGIGKISLSFAKQLAQKLKLDQSRIP 575

Query: 1742 SAFQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISL 1563
            SAFQIRYGGYKGV+AVDR+SFRK+S+R SMLKF+S NRML +T WSES PC+LNREIISL
Sbjct: 576  SAFQIRYGGYKGVIAVDRHSFRKLSMRNSMLKFESKNRMLCVTKWSESMPCFLNREIISL 635

Query: 1562 LSTLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSM 1383
            LSTLGV+DE  LA+Q EQ++LL  ML D+EAA  VLE  SG D ++ L++ML   YEP+ 
Sbjct: 636  LSTLGVKDEALLAMQEEQLQLLGKMLTDREAALDVLESLSGADSRSILVKMLNGFYEPNS 695

Query: 1382 EPFLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQ 1203
            EP+L MML+AH  YQ+SD++S+CRIFVPKGRVL+GC+DETG L YG+V++R+ + + + +
Sbjct: 696  EPYLSMMLKAHYAYQLSDLKSRCRIFVPKGRVLIGCLDETGILNYGQVFVRITVTKTKEK 755

Query: 1202 CRDQTFYQNVD--EKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQ 1029
              D+   QNVD  + T +IVGKVVVTKNPCLHPGDIRVL A+Y   LEEKGL DC++FPQ
Sbjct: 756  IGDENL-QNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAIYNEELEEKGLRDCLVFPQ 814

Query: 1028 KGERPHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFF 849
            KG RPHPNECSGGDLDGDL+F+ WD++LIPPQTD PMDY  RRPRIMDH+VTLEEI +FF
Sbjct: 815  KGPRPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQFF 874

Query: 848  VDYMINDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRP 669
            VDYMINDTLG IS AHL+HADREPEKARS  CL LA LHSMAVDFAKTGAPAEMP  L+P
Sbjct: 875  VDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKP 934

Query: 668  KEYPDFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFE 489
            +E+PDFMER D+  Y S GVLGKLYR  + +   + S+ +LSEK  + +YD +LEVNGFE
Sbjct: 935  REFPDFMERFDKPMYISNGVLGKLYRALVESTTQVRSNIVLSEKFAEEAYDHQLEVNGFE 994

Query: 488  AFLDSAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILV 309
            AFL++A SHK+ YA+K S+LM+++ A++E+E+LTGNL+NR+ YLQ D ++Y +MKDRIL+
Sbjct: 995  AFLETASSHKEMYAQKMSSLMSFYDAETEDEMLTGNLQNRASYLQRDNRRYGDMKDRILI 1054

Query: 308  SVKGLQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            SVK LQ+E   WF+  C+  E   MASAWYHV+YHP Y    + FLSFPWIVGDILL
Sbjct: 1055 SVKDLQREAKEWFESDCQPHEYQLMASAWYHVTYHPKYSHESSTFLSFPWIVGDILL 1111


>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score = 1121 bits (2899), Expect = 0.0
 Identities = 536/834 (64%), Positives = 680/834 (81%), Gaps = 1/834 (0%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK P DSKL YEILFQLNALVH+QKIS+ AV+ DLI +LS +  ++A  ILQ+L  L
Sbjct: 276  VPLVKFPSDSKLAYEILFQLNALVHTQKISIAAVDTDLIGILSVLPVETAVMILQKLRLL 335

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
            +S CY P+SFV+ +L +  G    +P S + RL   N+M C+R ++TP+K+YCLGPE+ET
Sbjct: 336  QSPCYNPVSFVKAKLPT--GKNFRIPLSVSERLKNHNVMSCHRALITPTKIYCLGPELET 393

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            +NY+V+N+AE+ SDF+R++F +EDW KL ++AIST +  G+FS P+KT IY R+LSIL++
Sbjct: 394  ANYVVKNFAEYASDFMRVTFVEEDWSKLSANAISTGVHLGVFSRPFKTKIYDRILSILQN 453

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRF+FLAFSASQLRS SVWMFASN  V A DIREWMGCFK IRS+SKCA+RMGQ
Sbjct: 454  GIVIGDKRFKFLAFSASQLRSNSVWMFASNDEVKAEDIREWMGCFKKIRSISKCASRMGQ 513

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS  T +VP +D+E I DIEV TDG+NYCFSDGIG+ISL FA+QVA+KCGL+ +PSA
Sbjct: 514  LFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISLPFARQVAEKCGLNHIPSA 573

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGVVAVDRNSF KMSLR SMLKF+S  RMLN+T WSES PC+LNREI++L S
Sbjct: 574  FQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKWSESMPCFLNREIVTLFS 633

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLG++DE+F  +Q EQ+ LL  ML ++EAA   L+   G + KN L++ML Q  EP+++P
Sbjct: 634  TLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSKNILVEML-QFDEPNVQP 692

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML+AH E  +SD++S+CRIFVPKGR+L+GC+DETGTL YG+VY+ + +K+AEL+C 
Sbjct: 693  YLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELECA 752

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
            DQ++++ VDE+TA+++GKVVVTKNPCLHPGD+RVL+AVYEP LEEKGLVDC++FP+KGER
Sbjct: 753  DQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVDCLVFPEKGER 812

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGD +F+ WD++LIP QT+ PMDY  RRPRIMDHEVTLEEIQKFFVDYM
Sbjct: 813  PHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRIMDHEVTLEEIQKFFVDYM 872

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            INDTLG IS AHL+HADREP KARS NCL LA LHSMAVDFAKTGAPAEMP  L+P+E+P
Sbjct: 873  INDTLGAISTAHLVHADREPYKARSENCLALATLHSMAVDFAKTGAPAEMPRALKPREFP 932

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFM+R ++  Y S+GVLGKLYR  + +   + S  + +++M + +YD +LEVNGFE+ + 
Sbjct: 933  DFMQRGNKPMYTSSGVLGKLYRATINSTVQIRSKFVWTKEMAELAYDHDLEVNGFESLIS 992

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
             AE+HK+ Y E+ S LM+Y+  + E+EILTGN+ N++ +L  D ++Y EMK+RI++SVK 
Sbjct: 993  VAETHKEMYEERMSLLMSYYDVEYEDEILTGNMYNKAQFLLRDNRRYGEMKERIVLSVKD 1052

Query: 296  LQKEVTVWFQESC-KLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            LQ+E   WF+ SC K DE  K+ASAWY+V+YHPNY E   N LSFPWIVGDILL
Sbjct: 1053 LQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFEERMNSLSFPWIVGDILL 1106


>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score = 1120 bits (2898), Expect = 0.0
 Identities = 535/834 (64%), Positives = 677/834 (81%), Gaps = 1/834 (0%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK P DSKL YEILFQLNALVH+QKIS+ AV+ DLI +LSG+  ++A  ILQ+L  L
Sbjct: 276  VPLVKFPSDSKLAYEILFQLNALVHTQKISIAAVDTDLIGILSGLPVETAVMILQKLRLL 335

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
            +S CY P+SFV+ +L +  G    +P S + RL   N+M C R ++TP+K+YCLGPE+ET
Sbjct: 336  QSPCYNPVSFVKAKLPT--GKNYRIPLSVSERLKNHNVMSCRRALITPTKIYCLGPELET 393

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            +NY+V+N+ E+ SDF+R++F +EDW KL ++AIST +  G+FS P+KT IY R+L +L++
Sbjct: 394  ANYVVKNFVEYASDFMRVTFVEEDWSKLSANAISTGVHLGVFSRPFKTKIYDRILYVLQN 453

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRFEFLAFSASQLRS SVWMFASN  V A DIREWMGCFK IRS+SKCA+RMGQ
Sbjct: 454  GIVIGDKRFEFLAFSASQLRSNSVWMFASNDEVKAEDIREWMGCFKKIRSISKCASRMGQ 513

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS  T +VP +D+E I DIEV TDG+NYCFSDGIG+ISL FA+QVA+KCGL+ +PSA
Sbjct: 514  LFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISLPFARQVAEKCGLNHIPSA 573

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGVVAVDRNSF KMSLR SMLKF+S  RMLN+T WSES PC+LNREI++L S
Sbjct: 574  FQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKWSESMPCFLNREIVTLFS 633

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLG++DE+F  +Q EQ+ LL  ML ++EAA   L+   G + KN L++ML Q YEP+++P
Sbjct: 634  TLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSKNILVEML-QFYEPNVQP 692

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML+AH E  +SD++S+CRIFVPKGR+L+GC+DETGTL YG+VY+ + +K+AEL+C 
Sbjct: 693  YLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELECA 752

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
            DQ++++ VDE+TA+++GKVVVTKNPCLHPGD+RVL+AVYEP LEEKGLVDC++FPQKGER
Sbjct: 753  DQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVDCLVFPQKGER 812

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGD +F+ WD++LIP QT+ PMDY  RRPRIMDHEVTLEEIQKFFVDYM
Sbjct: 813  PHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRIMDHEVTLEEIQKFFVDYM 872

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            INDTLG IS AHL+HADREP+KA S NCL LA LHSMAVDFAKTGAPAEMP  L+P+E+P
Sbjct: 873  INDTLGAISTAHLVHADREPDKACSENCLALATLHSMAVDFAKTGAPAEMPRALKPREFP 932

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFM+R ++  Y S+GVLGKLYR  + +     S  + +++M +  YD +LEVNGFE+ + 
Sbjct: 933  DFMQRGNKPMYTSSGVLGKLYRATINSTVQTRSKFVWTKEMAELVYDHDLEVNGFESLIS 992

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
             AE+HK+ Y E+ S LM+Y+  + E+EILTGN+ N++ +L  D ++Y EMK+RI++SVK 
Sbjct: 993  VAETHKEMYEERMSLLMSYYDVEYEDEILTGNIYNKAQFLLRDNRRYGEMKERIVLSVKD 1052

Query: 296  LQKEVTVWFQESC-KLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            LQ+E   WF+ SC K DE  K+ASAWY+V+YHPNY +   N LSFPWIVGDILL
Sbjct: 1053 LQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFQERMNSLSFPWIVGDILL 1106


>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
            gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
            2 [Cucumis sativus]
          Length = 1117

 Score = 1119 bits (2895), Expect = 0.0
 Identities = 535/833 (64%), Positives = 668/833 (80%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPL+KS   S L YE+ +QLN+LVH QKISL A N DLI+ L  +  D+A  +LQRL++L
Sbjct: 274  VPLIKSGLGSNLAYEVEYQLNSLVHMQKISLSAANQDLIDFLCTLDIDTALNVLQRLHQL 333

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
            K  CY+PLSF++ QL   + + K LP SS  RL   N+M CYRV+VTPS++YCLGPE+ET
Sbjct: 334  KFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRL-SNNVMNCYRVLVTPSRIYCLGPELET 392

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SNY+V+N++ + SDF+R++F +EDW KL + A++TSI+ G+ S PY+T IYHR++++LRD
Sbjct: 393  SNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTEIYHRIMTVLRD 452

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRFEFLAFSASQLRS SVWMFAS+  + A +IR+WMGCF+ IRS+SKCAARMGQ
Sbjct: 453  GIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQ 512

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS QT +VP RD+E IPDIEV TDG++YCFSDGIG+ISLSFA+QVA KCG++ +PSA
Sbjct: 513  LFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSA 572

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGGYKGV+AVDRNSFRK+SLR SMLKF+S N+MLN+T   +S PCYLNREI +LLS
Sbjct: 573  FQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIATLLS 632

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGV+DE F A+Q EQ+ LL  ML DK+ A  VLE   G D  N L+QML  GYEP++EP
Sbjct: 633  TLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENFHGADSNNILVQMLNHGYEPNIEP 692

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML+AH     SD+RS+CRIFVPKGR+L+GC+DETG L YG+VY  + L ++ELQ R
Sbjct: 693  YLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQSR 752

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
            +Q ++  +DE  ++++GKVVVTKNPCLHPGD+RVL+A++   LEEKGLVDC++FPQKG R
Sbjct: 753  NQNYFHTIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGAR 812

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PH NECSGGDLDGDLYF+ WDENLIPP+T+APMDY  RRPRIMDH+V LEEIQKFFVDYM
Sbjct: 813  PHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYM 872

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            INDTLG IS AHL+HADREP+KA S  CL LA LHSMAVDFAKTGAPAEMP VL+P+E+P
Sbjct: 873  INDTLGAISTAHLVHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFP 932

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFMER D+  Y S+ VLGKLYR A+ +++   S  + SE+  +  YD +LEV+GFEAFL+
Sbjct: 933  DFMERFDKPMYISSNVLGKLYRAAVKSIEQERSRLVWSEEAARAIYDYDLEVDGFEAFLE 992

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
             AE++K+ Y EK S LMNY+GA+ E+EIL G+LR+R+ YLQ D +KY +MKDRIL+SVK 
Sbjct: 993  IAETYKEMYIEKMSILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKN 1052

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            L+KEV  WF+ SC    R  MASAWYHV+YHP+Y +    + SFPW V D+LL
Sbjct: 1053 LRKEVKEWFENSCDPLNRRMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLL 1105


>ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X2 [Glycine
            max]
          Length = 941

 Score = 1102 bits (2851), Expect = 0.0
 Identities = 530/835 (63%), Positives = 670/835 (80%), Gaps = 2/835 (0%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK    SKL YE LFQLN+LVH+QKISL +V+++LI++L+G+  ++   I  +L+K+
Sbjct: 96   VPLVKRASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLAGLDEETRAVIFLKLHKM 155

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
              TCYEPL FV+ QL  L   +K LP SS  RL + N+M C+R ++TP+K+YCLGPE+ET
Sbjct: 156  SFTCYEPLKFVKTQLHVLSNKKKGLPQSSQKRLTDSNIMSCHRALITPTKIYCLGPELET 215

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SN++V+++A H SDF+R++F +E+W KL ++A+ST ++ GLFS P KT IY R+L+ILRD
Sbjct: 216  SNHVVKHFASHASDFMRITFVEENWNKLPTNAVSTGVQKGLFSKPLKTEIYKRILTILRD 275

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRFEFLAFSASQLRS SVW+FASN  + AADIREWMGCF NIRSVSKCAARMGQ
Sbjct: 276  GIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQ 335

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS QTF V ++D+E IPD+EV +DG++YCFSDGIG+IS SFA+QVAQK  L   PSA
Sbjct: 336  LFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGIGKISQSFARQVAQKLKLDHTPSA 395

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGG+KGV+AVDR SFRK+SLR SMLKF+S N ML +T WSES PC+LNREIISLLS
Sbjct: 396  FQIRYGGFKGVIAVDRRSFRKLSLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISLLS 455

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGV+DE+ LA+QH+Q+ LL  ML D +AA +VLE  +G D K+ L++ML +  EP+ EP
Sbjct: 456  TLGVKDEVLLAMQHDQLDLLGRMLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNSEP 515

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML+A+  YQ+SD++S+CRIFVPKGRVL+GC+DETG L YG+V++R+ + +   +  
Sbjct: 516  YLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREKFG 575

Query: 1196 DQTFYQ-NVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGE 1020
            D+   + + D+ T +IVGKVVVTKNPCLHPGDIRVL A+Y   LEEKGL DC++FPQKG 
Sbjct: 576  DENLRKVDGDDNTCIIVGKVVVTKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFPQKGH 635

Query: 1019 RPHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDY 840
            RPHPNECSGGDLDGDL+F+ WD++LIP QT+APMDY  RRPRIMDH+VTLEEIQ+FFVDY
Sbjct: 636  RPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDY 695

Query: 839  MINDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEY 660
            MINDTLG IS AHL+HADRE +KA+S  CL LA LHSMAVDFAKTGAPA MP VL+P+E+
Sbjct: 696  MINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREF 755

Query: 659  PDFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFL 480
            PDFMER D+  Y S GVLGKLYR  + +   +    + SEK  + +YD  LEVNGFEAFL
Sbjct: 756  PDFMERVDKPMYISKGVLGKLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFL 815

Query: 479  DSAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVK 300
            ++A +HK+ YAEK S+LM+++GA++E+E+L GNL+NR+ YLQ D ++Y +MKDRIL+SVK
Sbjct: 816  ETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVK 875

Query: 299  GLQKEVTVWFQESCKLDERSKMASAWYHVSYHPN-YCENGTNFLSFPWIVGDILL 138
             LQ+E   WF+ SC+  E   MASAWYHV+YHP+ YC     FLSFPWIVG+ILL
Sbjct: 876  NLQREAKEWFETSCEPHEYKPMASAWYHVTYHPSYYCRESPCFLSFPWIVGEILL 930


>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
            max]
          Length = 1121

 Score = 1102 bits (2851), Expect = 0.0
 Identities = 530/835 (63%), Positives = 670/835 (80%), Gaps = 2/835 (0%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK    SKL YE LFQLN+LVH+QKISL +V+++LI++L+G+  ++   I  +L+K+
Sbjct: 276  VPLVKRASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLAGLDEETRAVIFLKLHKM 335

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
              TCYEPL FV+ QL  L   +K LP SS  RL + N+M C+R ++TP+K+YCLGPE+ET
Sbjct: 336  SFTCYEPLKFVKTQLHVLSNKKKGLPQSSQKRLTDSNIMSCHRALITPTKIYCLGPELET 395

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SN++V+++A H SDF+R++F +E+W KL ++A+ST ++ GLFS P KT IY R+L+ILRD
Sbjct: 396  SNHVVKHFASHASDFMRITFVEENWNKLPTNAVSTGVQKGLFSKPLKTEIYKRILTILRD 455

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRFEFLAFSASQLRS SVW+FASN  + AADIREWMGCF NIRSVSKCAARMGQ
Sbjct: 456  GIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQ 515

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS QTF V ++D+E IPD+EV +DG++YCFSDGIG+IS SFA+QVAQK  L   PSA
Sbjct: 516  LFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGIGKISQSFARQVAQKLKLDHTPSA 575

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIRYGG+KGV+AVDR SFRK+SLR SMLKF+S N ML +T WSES PC+LNREIISLLS
Sbjct: 576  FQIRYGGFKGVIAVDRRSFRKLSLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISLLS 635

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGV+DE+ LA+QH+Q+ LL  ML D +AA +VLE  +G D K+ L++ML +  EP+ EP
Sbjct: 636  TLGVKDEVLLAMQHDQLDLLGRMLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNSEP 695

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML+A+  YQ+SD++S+CRIFVPKGRVL+GC+DETG L YG+V++R+ + +   +  
Sbjct: 696  YLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREKFG 755

Query: 1196 DQTFYQ-NVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGE 1020
            D+   + + D+ T +IVGKVVVTKNPCLHPGDIRVL A+Y   LEEKGL DC++FPQKG 
Sbjct: 756  DENLRKVDGDDNTCIIVGKVVVTKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFPQKGH 815

Query: 1019 RPHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDY 840
            RPHPNECSGGDLDGDL+F+ WD++LIP QT+APMDY  RRPRIMDH+VTLEEIQ+FFVDY
Sbjct: 816  RPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDY 875

Query: 839  MINDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEY 660
            MINDTLG IS AHL+HADRE +KA+S  CL LA LHSMAVDFAKTGAPA MP VL+P+E+
Sbjct: 876  MINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREF 935

Query: 659  PDFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFL 480
            PDFMER D+  Y S GVLGKLYR  + +   +    + SEK  + +YD  LEVNGFEAFL
Sbjct: 936  PDFMERVDKPMYISKGVLGKLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFL 995

Query: 479  DSAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVK 300
            ++A +HK+ YAEK S+LM+++GA++E+E+L GNL+NR+ YLQ D ++Y +MKDRIL+SVK
Sbjct: 996  ETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVK 1055

Query: 299  GLQKEVTVWFQESCKLDERSKMASAWYHVSYHPN-YCENGTNFLSFPWIVGDILL 138
             LQ+E   WF+ SC+  E   MASAWYHV+YHP+ YC     FLSFPWIVG+ILL
Sbjct: 1056 NLQREAKEWFETSCEPHEYKPMASAWYHVTYHPSYYCRESPCFLSFPWIVGEILL 1110


>ref|XP_007155403.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
            gi|561028757|gb|ESW27397.1| hypothetical protein
            PHAVU_003G198500g [Phaseolus vulgaris]
          Length = 1119

 Score = 1092 bits (2824), Expect = 0.0
 Identities = 526/834 (63%), Positives = 662/834 (79%), Gaps = 1/834 (0%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK    SKL YE LFQLN+LVH+QKISL +V+++LI++L G+  +    I Q+L+++
Sbjct: 275  VPLVKCASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLGGLDEEIRAVIFQKLHQM 334

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
              TCY+PL FV+ QL  L   ++  P SS  RL++ N+M C+R +VTP+K+YCLGPE+ET
Sbjct: 335  GFTCYDPLKFVKTQLHVLSNKKRSQPLSSQKRLIDNNIMSCHRALVTPTKIYCLGPELET 394

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SN++V+++A   SDF+R++F +E+W KL + A+ST ++ G+FS P+KT IY R+L+ILRD
Sbjct: 395  SNHVVKHFASCASDFMRITFVEENWNKLPNYAVSTGVQKGIFSKPFKTEIYKRILTILRD 454

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GIVIG KRFEFLAFSASQLRS SVW+FASN  V A DIREWMGCF NIRSVSKCAARMGQ
Sbjct: 455  GIVIGSKRFEFLAFSASQLRSNSVWLFASNDNVKATDIREWMGCFNNIRSVSKCAARMGQ 514

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSA 1737
            LFSSS QTF V  +D+E IPDIEVT+DG++YCFSDGIG+IS SF +QVAQK  L   PSA
Sbjct: 515  LFSSSMQTFEVAPQDVEVIPDIEVTSDGVSYCFSDGIGKISQSFGRQVAQKLKLDHTPSA 574

Query: 1736 FQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLS 1557
            FQIR+GGYKGV+ VDR+SFRK+SLR SMLKF+S NRML +T WSES PC+LNREIISLLS
Sbjct: 575  FQIRFGGYKGVITVDRHSFRKLSLRNSMLKFESKNRMLCVTKWSESMPCFLNREIISLLS 634

Query: 1556 TLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEP 1377
            TLGV+DE FLA Q +Q+ LL  ML D +AA  VLE  +G D ++ L++ML +  EP+ EP
Sbjct: 635  TLGVKDEAFLARQQDQLNLLGRMLTDSKAALDVLEGLNGADSRSILVKMLHEFNEPNSEP 694

Query: 1376 FLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCR 1197
            +L MML+A+  YQ+SD++S+ RIFVPKGRVL+GC+DETG L YG V++RV +KR   +  
Sbjct: 695  YLSMMLKAYYAYQLSDLKSRSRIFVPKGRVLVGCLDETGLLNYGEVFVRVTVKRTTEKFD 754

Query: 1196 DQTFYQNVDEKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGER 1017
            D       D+ T +IVGKVVVTKNPCLHPGD+RVL A+Y   LEEKGL DC++FPQ G R
Sbjct: 755  DNLRKGGDDDSTRIIVGKVVVTKNPCLHPGDVRVLDAIYNEELEEKGLRDCLVFPQNGHR 814

Query: 1016 PHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYM 837
            PHPNECSGGDLDGDL+F+ WD++LIP QT+APMDY  RRPRIMDH+VTLEEIQ FFVDYM
Sbjct: 815  PHPNECSGGDLDGDLFFISWDKDLIPAQTEAPMDYTGRRPRIMDHKVTLEEIQHFFVDYM 874

Query: 836  INDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYP 657
            INDTLG IS AHL+HADREP+KA+S  CL LA LHSMAVDFAKTGAPA MP VL+P+E+P
Sbjct: 875  INDTLGAISTAHLVHADREPDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFP 934

Query: 656  DFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLD 477
            DFMER ++  Y S GVLGKLYR  + +   +    + SEK+ + +YD  LEVNGFEAFL+
Sbjct: 935  DFMERVEKPMYISKGVLGKLYRAIIESQMQIKYSFVWSEKLAEEAYDRSLEVNGFEAFLE 994

Query: 476  SAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKG 297
            +A SHK+ YA+K S+LMN++GA++E+E+L GNL+NR+ YLQ D ++Y +MKDRIL+SVK 
Sbjct: 995  TASSHKEMYAQKMSSLMNFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILLSVKN 1054

Query: 296  LQKEVTVWFQESCKLDERSKMASAWYHVSYHPN-YCENGTNFLSFPWIVGDILL 138
            LQ+E   WF+ SC+  E   MASAWYHV+YHP+ YC+  + FLSFPWIVG++LL
Sbjct: 1055 LQREAKEWFETSCQPHEYRPMASAWYHVTYHPSYYCQESSCFLSFPWIVGEVLL 1108


>ref|XP_006286933.1| hypothetical protein CARUB_v10000076mg, partial [Capsella rubella]
            gi|482555639|gb|EOA19831.1| hypothetical protein
            CARUB_v10000076mg, partial [Capsella rubella]
          Length = 1165

 Score = 1088 bits (2813), Expect = 0.0
 Identities = 528/822 (64%), Positives = 657/822 (79%), Gaps = 2/822 (0%)
 Frame = -2

Query: 2597 YEILFQLNALVHSQKISLVAVNN-DLIEMLSGISPDSANYILQRLYKLKSTCYEPLSFVQ 2421
            YEILFQLN+LVH+QKISL A +N +LI M  G+S D+A  IL++L++  S CY+P+SFV+
Sbjct: 325  YEILFQLNSLVHAQKISLFAASNKELINMFRGLSLDTALVILKKLHQQCSICYDPVSFVK 384

Query: 2420 HQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVETSNYIVRNYAEHV 2241
             Q++S     KH P+S+  RL EQN+M C R  VTPSK+Y LGPE+E +NY+V+N+AEHV
Sbjct: 385  SQMQSPIKKMKHSPASAHKRLTEQNIMSCQRAYVTPSKIYLLGPELEKANYVVKNFAEHV 444

Query: 2240 SDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRDGIVIGGKRFEFL 2061
            +DF+R++F +EDW KL ++A+S + + G F  P++T+IY+RVLSIL +GI +G KRFEFL
Sbjct: 445  TDFMRITFVEEDWSKLSANALSVNSKDGYFVKPFRTNIYNRVLSILGEGITVGPKRFEFL 504

Query: 2060 AFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQLFSSSRQTFIVP 1881
            AFSASQLR  SVWMFASN  V A DIREWMGCF+ IRS+SKCAARMGQLFS+SRQT  V 
Sbjct: 505  AFSASQLRGNSVWMFASNKKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLNVR 564

Query: 1880 ARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSEVPSAFQIRYGGYKGVV 1701
            A+D+E IPDIEVTTDG +YCFSDGIG+ISL+FAKQVAQKCGL  VPSAFQIRYGGYKGV+
Sbjct: 565  AQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLDYVPSAFQIRYGGYKGVI 624

Query: 1700 AVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISLLSTLGVEDEMFLAV 1521
            AVDR+SFRKMSLR SMLKFDSNNRMLN+T W+ES PC+LNREII LLSTLG+ED +F A+
Sbjct: 625  AVDRSSFRKMSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAVFEAM 684

Query: 1520 QHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSMEPFLLMMLRAHREY 1341
            Q   + +L NML D+ AA  VL+  SG + KN L+ MLL GY PS EP+L MMLR H E 
Sbjct: 685  QAMHLSMLGNMLEDRNAALNVLQKLSGENSKNLLVDMLLHGYAPSSEPYLSMMLRVHHES 744

Query: 1340 QISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQCRDQTFYQNVDEKT 1161
            Q+S+++S+CRI VPKGR+L+GCMDE G L YG+VY+RV L +AEL+ R+Q++++ +DE+T
Sbjct: 745  QLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSREQSYFKKIDEET 804

Query: 1160 AVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQKGERPHPNECSGGDLD 981
            +V++GKVVVTKNPCLHPGDIRVL A+YE   EEKG +DCI+FPQKGERPHPNECSGGDLD
Sbjct: 805  SVVIGKVVVTKNPCLHPGDIRVLDAIYEVNFEEKGFLDCIIFPQKGERPHPNECSGGDLD 864

Query: 980  GDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFFVDYMINDTLGLISIAH 801
            GD +F+ WDE LIP Q D PMDY A RPRIMDH+VTLEEI KFFVDYMI+DTLG+IS AH
Sbjct: 865  GDQFFVSWDEKLIPSQMDPPMDYAASRPRIMDHDVTLEEIHKFFVDYMISDTLGMISTAH 924

Query: 800  LIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRPKEYPDFMEREDRGSYE 621
            LIHADR+PEKARS  CL LANLHS AVDFAKTGAPAEMP  L+P+E+PDF+ER ++ +Y 
Sbjct: 925  LIHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYI 984

Query: 620  STGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFEAFLDSAESHKKAYAEK 441
            S  V GKLYR   A   +L      +E     +YDS LE  GFE+F+++A+ H+  YAEK
Sbjct: 985  SESVFGKLYR---AVKSSLAQKKPEAETEDTTAYDSTLEEAGFESFIETAKIHRDMYAEK 1041

Query: 440  FSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILVSVKGLQKEVTVWFQES 261
             ++LM Y+GA +EEEILTG L+ + MYL  D ++Y +MKDRI +SVK LQKE   WF +S
Sbjct: 1042 LTSLMTYYGAVNEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKELQKEAMEWFSKS 1101

Query: 260  CKLD-ERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            C  + ++ K+ASAWY+V+Y+P+  +   NFLSFPWIVGDILL
Sbjct: 1102 CNEEQQKKKLASAWYYVTYNPSQVDEKLNFLSFPWIVGDILL 1143


>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1308

 Score = 1088 bits (2813), Expect = 0.0
 Identities = 527/837 (62%), Positives = 671/837 (80%), Gaps = 4/837 (0%)
 Frame = -2

Query: 2636 VPLVKSPPDSKLDYEILFQLNALVHSQKISLVAVNNDLIEMLSGISPDSANYILQRLYKL 2457
            VPLVK   DSKL YE LFQLN+LVH+QKISL +VN++LI++L+ +  ++   I Q+L+K+
Sbjct: 277  VPLVKCRLDSKLPYESLFQLNSLVHTQKISLASVNDELIDLLASLDAETKAVIFQKLHKM 336

Query: 2456 KSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVYCLGPEVET 2277
             STCYEPL +V+ QL  L   +K +  S   RL++ N+M C+R ++TPSK+YCLGPE+ET
Sbjct: 337  NSTCYEPLKYVRTQLHVLSIKKKSVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELET 396

Query: 2276 SNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYHRVLSILRD 2097
            SN++V+++A + SDF+R++F +EDW KL ++AIS +++ G+FS P +T IY RVL+ILRD
Sbjct: 397  SNHVVKHFAAYASDFMRITFVEEDWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRD 456

Query: 2096 GIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVSKCAARMGQ 1917
            GI+IG KRFEFLAFSASQLRS SVW+FASN  V AADIREWMG F NIRSVSKCAARMGQ
Sbjct: 457  GILIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQ 516

Query: 1916 LFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAKQVAQKCGLSE--VP 1743
            LFSSSRQTF +  +D++ IPDIE+T+DG++YCFSDGIG+IS SFA+Q+A+K  L E  +P
Sbjct: 517  LFSSSRQTFEMAPQDVDLIPDIEITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIP 576

Query: 1742 SAFQIRYGGYKGVVAVDRNSFRKMSLRKSMLKFDSNNRMLNITNWSESQPCYLNREIISL 1563
            SAFQIRYGGYKGV+AVDR+SF+K+SLRKSMLKF+S NRML +T WSES PC+LNREIISL
Sbjct: 577  SAFQIRYGGYKGVIAVDRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISL 636

Query: 1562 LSTLGVEDEMFLAVQHEQIKLLNNMLYDKEAARKVLECTSGFDMKNFLLQMLLQGYEPSM 1383
            LSTLG++DE  LA+Q +Q++LL  ML DKEAA  VLE  +G D  + L++ML + YEP+ 
Sbjct: 637  LSTLGIKDEALLALQEDQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNS 696

Query: 1382 EPFLLMMLRAHREYQISDIRSKCRIFVPKGRVLMGCMDETGTLCYGRVYIRVNLKRAELQ 1203
            EP+L MML+AH  YQ+SD++S+CRIFVPKGRVL+GC+DETG L YG+V++R+ + + + +
Sbjct: 697  EPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEK 756

Query: 1202 CRDQTFYQNVD--EKTAVIVGKVVVTKNPCLHPGDIRVLQAVYEPLLEEKGLVDCILFPQ 1029
              D+   +NVD  + T +IVGKVVVTKNPCLHPGDIRVL AVY   LEEKGL DC++FPQ
Sbjct: 757  FGDENL-RNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQ 815

Query: 1028 KGERPHPNECSGGDLDGDLYFMCWDENLIPPQTDAPMDYVARRPRIMDHEVTLEEIQKFF 849
            KG RPHPNECSGGDLDGDL+F+ WD++LIP QT+ PMDY  RRPRIMDH+VTLEEI +FF
Sbjct: 816  KGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFF 875

Query: 848  VDYMINDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDFAKTGAPAEMPTVLRP 669
            VDYMINDTLG IS AHL+HADRE +KA+S  CL LA LHSMAVDFAKTGAPAEMP  L+P
Sbjct: 876  VDYMINDTLGAISTAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKP 935

Query: 668  KEYPDFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKMGKPSYDSELEVNGFE 489
            +E+PDFMER ++  Y S GVLGKLYR  + +   +    ++SEK  K +YD +LEV+GFE
Sbjct: 936  REFPDFMERFEKPMYISKGVLGKLYRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFE 995

Query: 488  AFLDSAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQHDRKKYSEMKDRILV 309
             FL++A SH+  YA+K  +LM+++GA +E+E+LTGNL+NR+ YLQ D ++Y +MKDRIL+
Sbjct: 996  VFLETALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILI 1055

Query: 308  SVKGLQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGTNFLSFPWIVGDILL 138
            SVK LQ E   WF+  C+  E   MASAWYHV+YHP Y    + FLSFPWIVGDILL
Sbjct: 1056 SVKDLQLEAKEWFESDCQPHEYQLMASAWYHVTYHPKYYIESSTFLSFPWIVGDILL 1112



 Score =  162 bits (410), Expect = 7e-37
 Identities = 103/254 (40%), Positives = 126/254 (49%), Gaps = 2/254 (0%)
 Frame = -2

Query: 893  IMDHEVTLEEIQKFFVDYMINDTLGLISIAHLIHADREPEKARSPNCLRLANLHSMAVDF 714
            I+ H  +  +I KFFVDYMI DTLG IS AHL+HAD E  KA+S  CL LA LHSMAVDF
Sbjct: 1110 ILLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDF 1169

Query: 713  AKTGAPAEMPTVLRPKEYPDFMEREDRGSYESTGVLGKLYRTAMATVDNLDSHSILSEKM 534
            AKTGA AEMP VL+PKE+PDFM                                   E+ 
Sbjct: 1170 AKTGALAEMPRVLKPKEFPDFM-----------------------------------ERF 1194

Query: 533  GKPSYDSELEVNGFEAFLDSAESHKKAYAEKFSALMNYFGADSEEEILTGNLRNRSMYLQ 354
             KP Y S+  +              K Y     + M           LT N  +   +L 
Sbjct: 1195 EKPMYVSKGVLG-------------KLYRALVESTMQ----------LTSNFVSSGNFLS 1231

Query: 353  HDRKKYSEMKDRILVSVK--GLQKEVTVWFQESCKLDERSKMASAWYHVSYHPNYCENGT 180
                     K  +++++K   LQ EV  WF+  C+  E   MASAWYHV +HP Y    +
Sbjct: 1232 ---------KKHMIINLKLMDLQLEVKEWFESDCQPHEHQLMASAWYHVIHHPKYYHKSS 1282

Query: 179  NFLSFPWIVGDILL 138
            NF+SFPWIVGDILL
Sbjct: 1283 NFVSFPWIVGDILL 1296