BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00006861
         (3889 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       357   3e-95
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   354   2e-94
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           353   3e-94
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   353   3e-94
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   347   2e-92
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               345   9e-92
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   342   6e-91
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...   342   1e-90
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   341   1e-90
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   340   4e-90
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   330   3e-87
emb|CAN77580.1| hypothetical protein VITISV_015346 [Vitis vinifera]   322   7e-85
ref|XP_002278276.1| PREDICTED: pentatricopeptide repeat-containi...   318   1e-83
ref|XP_006841544.1| hypothetical protein AMTR_s00003p00166290 [A...   309   8e-81
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                307   2e-80
ref|NP_001154694.1| pentatricopeptide repeat-containing protein ...   306   5e-80
emb|CAB83319.1| putative protein [Arabidopsis thaliana]               306   5e-80
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               305   1e-79
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...   303   3e-79
ref|XP_006289785.1| hypothetical protein CARUB_v10003387mg [Caps...   302   7e-79

>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  357 bits (915), Expect = 3e-95
 Identities = 210/630 (33%), Positives = 320/630 (50%), Gaps = 17/630 (2%)
 Frame = +3

Query: 6    ELARGITRRNHAPFAMLKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFS 185
            +L  G    N +P  MLK+D+ KAFDS+ W F+  A++ +  P +F  W+ +CI T +F+
Sbjct: 574  DLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFT 633

Query: 186  PLMNGSTCGFFFGKRGLRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLS 365
              +NG   GFF   +GLRQGDPLSPYLF + ++  S+ L  +  S       K S+L++S
Sbjct: 634  VSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSIS 693

Query: 366  HLAFADDVIIFLKPSASTANQLCNILMEFEGWSGLRLNRDKSTIFVAGSNS-GNDLSRIL 542
            HL FADDV+IF    + + + +C  L +F  WSGL++N+DKS +++AG N   ++ +   
Sbjct: 694  HLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNANAAY 753

Query: 543  QVKLGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQS 722
               +G LP+++LGLP++  KL IA+  PL+     +   W  K LS+AGR++L+ +V+  
Sbjct: 754  GFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFG 813

Query: 723  SYIFWTGAFPIPYSVCSKLESLMGSFLRG----KSKLRLISWATICRPLEEGGLGIRRIK 890
            S  FW   F +P     ++ESL   FL      ++K   +SWA +C P  EGGLG+RR+ 
Sbjct: 814  SINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLL 873

Query: 891  DMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFA 1070
            + NK    +L+W ++ +K SLW  W H   L   S W        SW ++R+L +R    
Sbjct: 874  EWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAH 933

Query: 1071 NHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPS 1250
                  VGNG    +W   W   G L    G+      R+P  A +        W  P S
Sbjct: 934  QFLVCKVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVS 993

Query: 1251 SSPMVRTAWRQF--QQIPKLGCDEEDQFVWSP----CPSGLFSVASAWEQIRHHYDVWEW 1412
             S   +          +P    ++ D++ WS     C    FS A  WE IR    V  W
Sbjct: 994  RSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQG--FSAAKTWEAIRPKATVKSW 1051

Query: 1413 TELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFG--AQSHCELCWAGVESEDHLFFECP 1586
               +WF   +PK +F  W   L++L T+ +L  +G      C LC    ES DHL   C 
Sbjct: 1052 ASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICE 1111

Query: 1587 FSSEVWMRIKVKCWRNVQVVRGRFQESQTILRSF---GLNRADGVIRKLCYTVTVHFIWW 1757
            FS++VW  +    +R +   R R   S + L S+       A  ++RK+   V V+ +W 
Sbjct: 1112 FSAQVWRLV----FRRI-CPRQRLFSSWSELLSWVRQSSPEAPPLLRKIVSQVVVYNLWR 1166

Query: 1758 ERNMRLFNKGWRSATRLAEEII-QLVHQKV 1844
            +RN  L N     + RLA  +I +LV +++
Sbjct: 1167 QRNNLLHN-----SLRLAPAVIFKLVDREI 1191


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  354 bits (908), Expect = 2e-94
 Identities = 206/603 (34%), Positives = 303/603 (50%), Gaps = 13/603 (2%)
 Frame = +3

Query: 6    ELARGITRRNHAPFAMLKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFS 185
            E+  G  R N +P  MLK+D+ KAFDS+ W F+  A++ +  P R+  W+ +CI T SF+
Sbjct: 434  EMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFT 493

Query: 186  PLMNGSTCGFFFGKRGLRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLS 365
              +NG+T GFF   +GLRQGDPLSPYLF + +++ S  L  +  S       K   L++S
Sbjct: 494  ISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSIS 553

Query: 366  HLAFADDVIIFLKPSASTANQLCNILMEFEGWSGLRLNRDKSTIFVAGSN-SGNDLSRIL 542
            HL FADDV+IF    +S+ + +C  L +F  WSGL++N+DKS +F AG + S    S   
Sbjct: 554  HLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITSAAY 613

Query: 543  QVKLGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQS 722
                G  P+++LGLP++  KL IAD  PL+   + +L  W +K LS+AGR +L+ +V+  
Sbjct: 614  GFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFG 673

Query: 723  SYIFWTGAFPIPYSVCSKLESLMGSFLRGKS----KLRLISWATICRPLEEGGLGIRRIK 890
               FW   F +P     K+ESL   FL   S    K   +SW   C P  EGGLG R   
Sbjct: 674  LINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFG 733

Query: 891  DMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFA 1070
            + NK  L +L+W ++    SLW QW     L + S W         W ++ +L +R    
Sbjct: 734  EWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAE 793

Query: 1071 NHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPS 1250
                  VGNG    FW   W   G L+   G+      RIP  A + +  +   W  P S
Sbjct: 794  KFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLS 853

Query: 1251 SSPMVRTAWRQFQQIPKLG-CDEEDQFVWSPCPSGL----FSVASAWEQIRHHYDVWEWT 1415
             S    +       +P        D + W  C   +    FS A  WE +R    V  W 
Sbjct: 854  RSLTADSILSHLASLPPPSPLMVSDSYSW--CVDDVDCQGFSAAKTWEVLRPRRPVKRWA 911

Query: 1416 ELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFG--AQSHCELCWAGVESEDHLFFECPF 1589
            + VWF   +PK +F  W   L++LPT+ +L  +G  + + C LC    E+ DHL   C F
Sbjct: 912  KSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDF 971

Query: 1590 SSEVWMRIKVK-CWRNVQVVRGRFQESQTILRSFGLNRADGVIRKLCYTVTVHFIWWERN 1766
            SS+VW  + ++ C R  Q +   + E  +  R      A  ++RK+   + V+ +W +RN
Sbjct: 972  SSQVWRMVFLRLCPR--QRLLCTWAELLSWTRQ-STAAAPSLLRKVVAQLVVYNLWRQRN 1028

Query: 1767 MRL 1775
            + L
Sbjct: 1029 LVL 1031


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  353 bits (907), Expect = 3e-94
 Identities = 206/603 (34%), Positives = 302/603 (50%), Gaps = 13/603 (2%)
 Frame = +3

Query: 6    ELARGITRRNHAPFAMLKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFS 185
            E+  G  R N +P  MLK+D+ KAFDS+ W F+  A++ +  P R+  W+ +CI T SF+
Sbjct: 434  EMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTPSFT 493

Query: 186  PLMNGSTCGFFFGKRGLRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLS 365
              +NG+T GFF   +GLRQGDPLSPYLF + +++ S  L  +  S       K   L++S
Sbjct: 494  ISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDLSIS 553

Query: 366  HLAFADDVIIFLKPSASTANQLCNILMEFEGWSGLRLNRDKSTIFVAGSN-SGNDLSRIL 542
            HL FADDV+IF    +S+ + +C  L +F  WSGL++N+DKS +F AG + S    S   
Sbjct: 554  HLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITSAAY 613

Query: 543  QVKLGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQS 722
                G  P+++LGLP++  KL IAD  PL+   + +L  W +K LS+AGR +L+ +V+  
Sbjct: 614  GFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFG 673

Query: 723  SYIFWTGAFPIPYSVCSKLESLMGSFLRGKS----KLRLISWATICRPLEEGGLGIRRIK 890
               FW   F +P     K+ESL   FL   S    K   +SW   C P  EGGLG R   
Sbjct: 674  LINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFG 733

Query: 891  DMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFA 1070
            + NK  L +L+W ++    SLW QW     L + S W         W ++ +L +R    
Sbjct: 734  EWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNLRPLAE 793

Query: 1071 NHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPS 1250
                  VGNG    FW   W   G L+   G+      RIP  A + +  +   W  P S
Sbjct: 794  KFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAIDGSGWRLPLS 853

Query: 1251 SSPMVRTAWRQFQQIPKLG-CDEEDQFVWSPCPSGL----FSVASAWEQIRHHYDVWEWT 1415
             S    +       +P        D + W  C   +    FS A  WE +R    V  W 
Sbjct: 854  RSLTADSILSHLASLPPPSPLMVSDSYSW--CVDDVDCQGFSAAKTWEVLRPRRPVKRWA 911

Query: 1416 ELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFG--AQSHCELCWAGVESEDHLFFECPF 1589
              VWF   +PK +F  W   L++LPT+ +L  +G  + + C LC    E+ DHL   C F
Sbjct: 912  RSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLLLCDF 971

Query: 1590 SSEVWMRIKVK-CWRNVQVVRGRFQESQTILRSFGLNRADGVIRKLCYTVTVHFIWWERN 1766
            SS+VW  + ++ C R  Q +   + E  +  R      A  ++RK+   + V+ +W +RN
Sbjct: 972  SSQVWRMVFLRLCPR--QRLLCTWAELLSWTRQ-STAAAPSLLRKVVAQLVVYNLWRQRN 1028

Query: 1767 MRL 1775
            + L
Sbjct: 1029 LVL 1031


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  353 bits (906), Expect = 3e-94
 Identities = 203/624 (32%), Positives = 318/624 (50%), Gaps = 25/624 (4%)
 Frame = +3

Query: 54   LKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFSPLMNGSTCGFFFGKRG 233
            +K+DI KAFDS+ W F+      + FP  F  W+  CI T SFS  +NG   G+F   RG
Sbjct: 596  IKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRG 655

Query: 234  LRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLSHLAFADDVIIFLKPSA 413
            LRQG  LSPYLF I + +LS  L     ++ F    KC ++ L+HL+FADD+++      
Sbjct: 656  LRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKI 715

Query: 414  STANQLCNILMEFEGWSGLRLNRDKSTIFVAG--SNSGNDLSRILQVKLGQLPVKHLGLP 587
             +  ++  +  EF  WSGLR++ +KST+++AG  + + N+++       GQLPV++LGLP
Sbjct: 716  RSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLP 775

Query: 588  VIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQSSYIFWTGAFPIPYSV 767
            +I  +LS  DC PL+    +++  W ++ LSYAGRL L+ +VL S   FW  AF +P   
Sbjct: 776  LITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKC 835

Query: 768  CSKLESLMGSFLRGKSKLR----LISWATICRPLEEGGLGIRRIKDMNKAGLCKLLWWIY 935
              +LE +  +FL   +++      ISW  +C+P +EGGLG+R +K+ N     KL+W I 
Sbjct: 836  IRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIV 895

Query: 936  SSKKSLWVQWIHSRFLRNNSIW-TATIPNDVSWVYRRILKIRNQFANHCFNLVGNGDATK 1112
            S   SLWV+W+    LRN S W      +  SW+++++LK R          VGNG  T 
Sbjct: 896  SHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTS 955

Query: 1113 FWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEV----REAGYWNSPPS-SSPMVRTAW 1277
            FW   W   G LL+  G+   +   I RR T++E     R+  + N   +     ++ +W
Sbjct: 956  FWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNVIEDALKKSW 1015

Query: 1278 RQFQQIPKLGCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWEWTELVWFYDKIPK 1448
                       + ED+ +W   S      FS    W   R       W +++WF    PK
Sbjct: 1016 -------DTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPK 1068

Query: 1449 CSFTCWRMLLSKLPTKDKLTRF--GAQSHCELCWAGVESEDHLFFECPFSSEVWMRIKVK 1622
             SF  W     +LPT D++  +  G  + C  C   +E+ DHLFF C F+S +W      
Sbjct: 1069 YSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIW------ 1122

Query: 1623 CWRNVQVVRGRFQESQT--------ILRSFGLNRADGVIRKLCYTVTVHFIWWERNMRLF 1778
                V + RG F+   T         + +   +R +  +R+  +  T++ +W ERN R  
Sbjct: 1123 ----VDLARGIFKTQYTSHWQSIIEAITNSQHHRVEWFLRRYVFQATIYIVWRERNGRRH 1178

Query: 1779 NKGWRSATRLAEEIIQLVHQKVST 1850
             +   +A++L   I + +  ++S+
Sbjct: 1179 GEPPNTASQLVGWIDKQIRNQLSS 1202


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  347 bits (890), Expect = 2e-92
 Identities = 202/637 (31%), Positives = 326/637 (51%), Gaps = 19/637 (2%)
 Frame = +3

Query: 6    ELARGITRRNHAPFAMLKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFS 185
            EL +   + + +    +K+DI KAFDS+ W F+   +  M FP  F  W+  C+ T SFS
Sbjct: 301  ELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFS 360

Query: 186  PLMNGSTCGFFFGKRGLRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLS 365
              +NG   G+F   RGLRQG  LSPYLF I + +LS  L     ++EF    +C +L L+
Sbjct: 361  IQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLT 420

Query: 366  HLAFADDVIIFLKPSASTANQLCNILMEFEGWSGLRLNRDKSTIFVAG--SNSGNDLSRI 539
            HL FADD++I       + + +  +L +F    GL++  +K+T+++AG   +S   +S  
Sbjct: 421  HLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSR 480

Query: 540  LQVKLGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQ 719
                +G+LPV++LGLP++  +L+ +D +PL+    R++  W ++ LS+AGRL L+ +VL 
Sbjct: 481  YSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLW 540

Query: 720  SSYIFWTGAFPIPYSVCSKLESLMGSFLRGKSKLR----LISWATICRPLEEGGLGIRRI 887
            S   FW  AF +P    +++  +  + L    +L      +SW  IC+P +EGGLG++ +
Sbjct: 541  SITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSL 600

Query: 888  KDMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQ 1064
            ++ NK    KL+W + S + SLWV+W     L+  S W+    + + SW++RR+LK R  
Sbjct: 601  REANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREV 660

Query: 1065 FANHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSP 1244
              + C   V NG  T FW   W  +G L++  G    +   I R  T+ E      W+  
Sbjct: 661  AKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRHMTLAEA-----WSRR 715

Query: 1245 PSSSPMVRTAWRQFQQI-----PKLGCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYD 1400
                  V     +F++I          + ED  +W          FS    W  IR   +
Sbjct: 716  RRKRHRVEIL-NEFEEILLQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSN 774

Query: 1401 VWEWTELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRF--GAQSHCELCWAGVESEDHLF 1574
               W + VWF    PK SF  W  + ++L T D++  +  G  + C  C + +E+ DHLF
Sbjct: 775  QRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLF 834

Query: 1575 FECPFSSEVWMRIKVKCWRNVQVVRGRFQESQTI--LRSFGLNRADGVIRKLCYTVTVHF 1748
            F+C +SSE+W  I     +NV   R   + S  +  +     +R    + +  + V++H 
Sbjct: 835  FQCCYSSEIWTSIA----KNVYKDRFSTKWSAVVNYISDSQPDRIQSFLSRYTFQVSIHS 890

Query: 1749 IWWERNMRLFNKGWRSATRLAEEIIQLVHQKVSTSKK 1859
            IW ERN R   +  RSA+ L  +I + +  ++ST KK
Sbjct: 891  IWRERNSRRHGEKSRSASNLIRQIDKTIRNQLSTIKK 927


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  345 bits (885), Expect = 9e-92
 Identities = 194/603 (32%), Positives = 310/603 (51%), Gaps = 14/603 (2%)
 Frame = +3

Query: 6    ELARGITRRNHAPFAMLKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFS 185
            EL +   + + +    +K+DI KAFDS+ W F+   +  M F P F  W+  CI T SFS
Sbjct: 227  ELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFS 286

Query: 186  PLMNGSTCGFFFGKRGLRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLS 365
              +NG   G+F  KRGLRQG  LSPYLF I + +LS  L      ++F    KC  L L+
Sbjct: 287  VQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRLGLT 346

Query: 366  HLAFADDVIIFLKPSASTANQLCNILMEFEGWSGLRLNRDKSTIFVAGSNS--GNDLSRI 539
            HL+FADD+++       +   +  +  EF   SGLR++ +KST+++AG +     +++  
Sbjct: 347  HLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAK 406

Query: 540  LQVKLGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQ 719
                +GQLPV++LGLP++  +L+ AD +PL+    +++  W  +  S+AGR  L+K+VL 
Sbjct: 407  FLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLW 466

Query: 720  SSYIFWTGAFPIPYSVCSKLESLMGSFLRGKSKL----RLISWATICRPLEEGGLGIRRI 887
            S   FW  AF +P     +++ L  SFL   S++      ISW  +C+P  EGGLG+R +
Sbjct: 467  SICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNL 526

Query: 888  KDMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQ 1064
            K+ N     KL+W I S+  SLW +W+    +R  SIW+      + SW++R+ILKIR+ 
Sbjct: 527  KEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDV 586

Query: 1065 FANHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSP 1244
              +     VGNG++  FW   W   G L+DT G+   +   IPR A++ +          
Sbjct: 587  AKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTRRSRRRH 646

Query: 1245 PSSSPMVRTAWRQFQQIPKLGCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWEWT 1415
             +S          +Q+I     D ED  +W   +      FS    W  I+       W 
Sbjct: 647  RTSLLNEIEEMMAYQRIHH--SDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWH 704

Query: 1416 ELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFGA----QSHCELCWAGVESEDHLFFEC 1583
            + VWF    PK +   W  + ++LPT D++ ++ +      +C LC    ++ +HLFF C
Sbjct: 705  KGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSC 764

Query: 1584 PFSSEVWMRIKVKCWRNVQVVRGRFQESQTILRSFGLNRADGVIRKLCYTVTVHFIWWER 1763
             ++S VW  +    W+       R+    T + +   +R +G + +  +  T++ +W ER
Sbjct: 765  SYASTVWAALAKGIWKTRYST--RWSHLLTHISTHFQDRVEGFLTRYIFQATIYHVWRER 822

Query: 1764 NMR 1772
            N R
Sbjct: 823  NGR 825


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  342 bits (878), Expect = 6e-91
 Identities = 199/627 (31%), Positives = 309/627 (49%), Gaps = 14/627 (2%)
 Frame = +3

Query: 6    ELARGITRRNHAPFAMLKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFS 185
            EL +G  + N +   +LK+D+ KAFDS+ W FI   +K    PPRF  W+ +CI +TSFS
Sbjct: 573  ELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFS 632

Query: 186  PLMNGSTCGFFFGKRGLRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLS 365
              ++GS CG+F G +GLRQGDPLSP LF I +++LS  L+ K          K S + +S
Sbjct: 633  INVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRIS 692

Query: 366  HLAFADDVIIFLKPSASTANQLCNILMEFEGWSGLRLNRDKSTIFVAG-SNSGNDLSRIL 542
             LAFADD++IF    AS+   + ++L  F+  SGL +N +KS ++ AG  ++  + +   
Sbjct: 693  SLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTLAF 752

Query: 543  QVKLGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQS 722
                G  P ++LGLP++  KL  +D + L+   A +   W  K LS+AGRL+L+ +V+ S
Sbjct: 753  GFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYS 812

Query: 723  SYIFWTGAFPIPYSVCSKLESLMGSFLRGKSKLR----LISWATICRPLEEGGLGIRRIK 890
            +  FW  +F +P      +E +   FL G    R     +SW   C P  EGGLG+R   
Sbjct: 813  TVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFW 872

Query: 891  DMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFA 1070
              NK    +L+W +++ + SLWV W H+  LR+ + W A   +  SW+++ IL +R    
Sbjct: 873  TWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAK 932

Query: 1071 NHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPS 1250
                  VGNG    +W   W   G L++  G +    T I   A + E   +  W  P +
Sbjct: 933  RFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPSA 992

Query: 1251 ---SSPMVRTAWRQFQQIPKLGCDEEDQFVW--SPCPSGLFSVASAWEQIRHHYDVWEWT 1415
               ++ +              G   ED + W      S  FS    WE +R       W 
Sbjct: 993  RTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWA 1052

Query: 1416 ELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFGAQ--SHCELCWAGVESEDHLFFECPF 1589
              VW+   IPK +F  W   L++LP + + T +     S C +C    E+ DHLF  C  
Sbjct: 1053 AAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTL 1112

Query: 1590 SSEVWMRIKVKCWRNVQVVRGRFQESQTILRSFGLNRA--DGVIRKLCYTVTVHFIWWER 1763
             S +W ++  +  R+       F+E + I+     N+    G ++KL     +  IW ER
Sbjct: 1113 GSLIWQQVLARFGRSQM-----FREWKDIIEWMLSNQGSFSGTLKKLAVQTAIFHIWKER 1167

Query: 1764 NMRLFNKGWRSATRLAEEIIQLVHQKV 1844
            N RL +    S T + ++I + +   +
Sbjct: 1168 NSRLHSAMSASHTAIFKQIDRSIRDSI 1194


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  342 bits (876), Expect = 1e-90
 Identities = 203/621 (32%), Positives = 313/621 (50%), Gaps = 23/621 (3%)
 Frame = +3

Query: 54   LKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFSPLMNGSTCGFFFGKRG 233
            +K+DI KAFDS+ W F+  A+  M FP  F  W+  CI TTSFS  +NG   G+F   RG
Sbjct: 1    MKIDISKAFDSLQWSFLINALSAMNFPGEFIHWISRCITTTSFSVQVNGELAGYFRSARG 60

Query: 234  LRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLSHLAFADDVIIFLKPSA 413
            +RQG  LSPYLF I +++LS  L      K F    KC +L L+HL FADD++I      
Sbjct: 61   IRQGCALSPYLFVISMEVLSKMLDQAAGGKRFGFHPKCKNLGLTHLCFADDLMILTDGKV 120

Query: 414  STANQLCNILMEFEGWSGLRLNRDKSTIFVAGSNSGNDLSRILQVK--LGQLPVKHLGLP 587
             + + +  ++  F   SGL++N +K+T++ AG +  N    I +    LGQLPV++LGLP
Sbjct: 121  RSVDGIVEVMNLFAKRSGLQINMEKTTLYTAGVSDHNRYMMISRYPFGLGQLPVRYLGLP 180

Query: 588  VIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQSSYIFWTGAFPIPYSV 767
            ++  +L+  D +PL      ++  W ++ LS+AGRL L+ +VL S+  FW  AF +P + 
Sbjct: 181  LVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNFWMSAFRLPSAC 240

Query: 768  CSKLESLMGSFLRGKSKLR----LISWATICRPLEEGGLGIRRIKDMNKAGLCKLLWWIY 935
              ++ S+  +FL    +L      +SW  IC+P +EGGLG+R + + N   + KL+W + 
Sbjct: 241  LKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVT 300

Query: 936  SSKKSLWVQWIHSRFLRNNSIWTATIPNDV--SWVYRRILKIRNQFANHCFNLVGNGDAT 1109
            S+  SLWV+W     L+  S W+ T PN    SW+++++LK R          V NG  T
Sbjct: 301  SNDDSLWVKWSKMNLLKQESFWSLT-PNSSLGSWMWKKMLKYRETAKPFSRVEVNNGART 359

Query: 1110 KFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSSPM------VRT 1271
             FW   W   G L+D  G+  ++   I R  T+ E      W++             +  
Sbjct: 360  SFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEA-----WSNRRRRKHRTEQLNDIEA 414

Query: 1272 AWRQFQQIPKLGCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWEWTELVWFYDKI 1442
            A  Q  Q   L    ED  +W          FS    W Q+R   +   W + VWF    
Sbjct: 415  ALNQKYQTRNL--LREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVAWYKGVWFSHST 472

Query: 1443 PKCSFTCWRMLLSKLPT--KDKLTRFGAQSHCELCWAGVESEDHLFFECPFSSEVWMRIK 1616
            PK  F  W  L ++L T  + +L   G+   C  C   +E+ DHLFF C ++S +W  I 
Sbjct: 473  PKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAIA 532

Query: 1617 VKCWRNVQVVRGRFQ-ESQTILRSFGLNRADGV---IRKLCYTVTVHFIWWERNMRLFNK 1784
                    V++ RF  + QTI+      + D +   + +  + +TVH +W ERN R   +
Sbjct: 533  ------KNVLQHRFSTDWQTIVNYISETQTDRIRSFLSRYIFQLTVHTVWKERNDRRHGE 586

Query: 1785 GWRSATRLAEEIIQLVHQKVS 1847
              R++  L   + + +  ++S
Sbjct: 587  EPRTSANLISWMDKQIRNQLS 607


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  341 bits (875), Expect = 1e-90
 Identities = 211/627 (33%), Positives = 321/627 (51%), Gaps = 24/627 (3%)
 Frame = +3

Query: 6    ELARGITRRNHAPFAMLKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFS 185
            EL +   + + +  + LK+DI KAFD + W F+   +K +  P  F  W+  CI T SFS
Sbjct: 727  ELVKDYHKESISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFS 786

Query: 186  PLMNGSTCGFFFGKRGLRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLS 365
              +NG   GFF  +RGLRQG  LSPYL+ I + +LS  L      K+     +C ++NL+
Sbjct: 787  VQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLT 846

Query: 366  HLAFADDVIIFLKPSASTANQLCNILMEFEGWSGLRLNRDKSTIFVAGSNSGNDLSRILQ 545
            HL FADD+++F   ++ +      I  +F   S L+++ +KSTIF+AG  S N  + ILQ
Sbjct: 847  HLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGI-SPNAKTSILQ 905

Query: 546  ---VKLGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVL 716
                +LG LPVK+LGLP++  +++ +D  PLV     ++  W  + LS+AGRL+L+K+VL
Sbjct: 906  QFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVL 965

Query: 717  QSSYIFWTGAFPIPYSVCSKLESLMGSFLRG----KSKLRLISWATICRPLEEGGLGIRR 884
             S   FW   F +P +   ++E +  +FL       +K   I+W+ +C+  EEGGLG++ 
Sbjct: 966  SSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKP 1025

Query: 885  IKDMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRN 1061
            +K+ N+  L KL+W I S++ SLWV+W++   +R  + W+      + SW++R+ILK R+
Sbjct: 1026 LKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRD 1085

Query: 1062 QFANHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEV-------- 1217
            +        V +G  T FW   W P G L    G    +   IP  AT+ EV        
Sbjct: 1086 KARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHRRKR 1145

Query: 1218 REAGYWNSPPSSSPMVRTAWRQFQQIPKLGCDEEDQFVWSPCPSGLFSVASAWEQIRHHY 1397
              A + N   S   + R   R       L   +ED F  S      FS +  W+QIR   
Sbjct: 1146 HRADFLNQIKSQIELARQD-RSTDGDRSLWKQKEDTFKSS------FSSSKTWQQIRSIS 1198

Query: 1398 DVWEWTELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRF--GAQSHCELCWAGVESEDHL 1571
               +W   VWF    PK SF  W    ++L T DK+ ++  GA+  C  C   +E+ DHL
Sbjct: 1199 LRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHL 1258

Query: 1572 FFECPFSSEVWMRIK--VKCWRNV----QVVRGRFQESQTILRSFGLNRADGVIRKLCYT 1733
            FF CP+SS VW  +   +   RN+     +       S+  L  F L  A        + 
Sbjct: 1259 FFSCPYSSHVWFSLTKGLLNGRNILNWNLITPHLLDSSRPYLHVFTLRYA--------FQ 1310

Query: 1734 VTVHFIWWERNMRLFNKGWRSATRLAE 1814
             ++H +W ERN R   +    A +LA+
Sbjct: 1311 ASIHSLWRERNCRRHGETAIPAAKLAK 1337


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  340 bits (871), Expect = 4e-90
 Identities = 188/543 (34%), Positives = 283/543 (52%), Gaps = 13/543 (2%)
 Frame = +3

Query: 6    ELARGITRRNHAPFAMLKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFS 185
            EL  G  ++N AP +MLK+D+ KAFDS+ W FI  A++ +  P +F  W++EC+ T SFS
Sbjct: 471  ELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFS 530

Query: 186  PLMNGSTCGFFFGKRGLRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLS 365
             ++NG + G F+  +GLRQGDP+SPYLF + +++ S  LQ +  S       K S L +S
Sbjct: 531  VILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEIS 590

Query: 366  HLAFADDVIIFLKPSASTANQLCNILMEFEGWSGLRLNRDKSTIFVAG-SNSGNDLSRIL 542
            HL FADDV+IF    +S+ + +   L +F GWSGL +N +K+ ++ AG S S +D     
Sbjct: 591  HLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMASY 650

Query: 543  QVKLGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQS 722
              KLG LPV++LGLP++  KL+IA+ APL+     +   W  ++LS+AGR++L+ +V+  
Sbjct: 651  GFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISG 710

Query: 723  SYIFWTGAFPIPYSVCSKLESLMGSFLRG----KSKLRLISWATICRPLEEGGLGIRRIK 890
               FW  +F +P     K+ESL   FL      K  +  ++W+ +C P  EGG+G+RR  
Sbjct: 711  IVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFA 770

Query: 891  DMNKAGLCKLLWWIYSSKKSLWVQWIHSRFL-RNNSIWTATIPNDVSWVYRRILKIRNQF 1067
              N+    +++W ++S+  SLWV W     L ++ S W        SW ++ +L++R   
Sbjct: 771  VSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVA 830

Query: 1068 ANHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPP 1247
                   VGNG    FW   W P G L+   G       R+   A I +V  +  W+   
Sbjct: 831  ERFIRCNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIAD 890

Query: 1248 SSSPMVRTAWRQFQQIP-KLGCDEEDQFVW----SPCPSGLFSVASAWEQIRHHYDVWEW 1412
              S    +       I       + D + W      C    FS A+ W  +R       W
Sbjct: 891  PRSDQALSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQG--FSAAATWSALRPSSAPVPW 948

Query: 1413 TELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFGAQ--SHCELCWAGVESEDHLFFECP 1586
               VWF    PK +F  W   L +LPTK +L  +G Q  + C LC    E+ DHLF  C 
Sbjct: 949  ARAVWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCD 1008

Query: 1587 FSS 1595
            F++
Sbjct: 1009 FAN 1011


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  330 bits (846), Expect = 3e-87
 Identities = 197/628 (31%), Positives = 319/628 (50%), Gaps = 13/628 (2%)
 Frame = +3

Query: 6    ELARGITRRNHAPFAMLKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFS 185
            EL +   + +  P   +K+DI KAFDS+ W+F+   ++ + FP  F  W+  CI T +FS
Sbjct: 877  ELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFS 936

Query: 186  PLMNGSTCGFFFGKRGLRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLS 365
              +NG   GFF   RGLRQG  LSPYLF I + +LS  +      +      KC  + L+
Sbjct: 937  VQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLT 996

Query: 366  HLAFADDVIIFLKPSASTANQLCNILMEFEGWSGLRLNRDKSTIFVAGSNSGNDLSRILQ 545
            HL FADD+++F+     +   + N+  EF G SGL+++ +KSTI++AG ++ + +  +  
Sbjct: 997  HLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSS 1056

Query: 546  VKL--GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQ 719
                 GQLPV++LGLP++  +++ AD +PL+     K+  W A+ LSYAGRL L+ +V+ 
Sbjct: 1057 FPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIV 1116

Query: 720  SSYIFWTGAFPIPYSVCSKLESLMGSFLRG----KSKLRLISWATICRPLEEGGLGIRRI 887
            S   FW  A+ +P     ++E L  +FL        K   I+W++IC+P +EGGLGI+ +
Sbjct: 1117 SIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSL 1176

Query: 888  KDMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQ 1064
             + NK    KL+W + S++ SLWV WI +  +R  + W+A   + + SW+++++LK R  
Sbjct: 1177 AEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYREL 1236

Query: 1065 FANHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEV-REAGYWNS 1241
              +     V NG +T FW   W   G LLD  G    +   IP    ++ V R   +   
Sbjct: 1237 AKSMHKVEVRNGSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQH 1296

Query: 1242 PPSSSPMVRTAWRQFQQIPKLGCDEEDQFVWSPCPSGL---FSVASAWEQIRHHYDVWEW 1412
              +    +    ++ QQ  +      D  +W    +     F     W  +R H     W
Sbjct: 1297 RAAIYNRINAEIQRLQQQEREA--GPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNW 1354

Query: 1413 TELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRF--GAQSHCELCWAGVESEDHLFFECP 1586
             + VWF    PK SF  W  + ++L T D++  +  G    C LC    E+ DHLFF C 
Sbjct: 1355 YKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQ 1414

Query: 1587 FSSEVWMRIKVKCWRNVQVVRGRFQESQTILRSFGLNRADGVIRKLCYTVTVHFIWWERN 1766
            ++S VW  +  +   +    R  +    T+L +  L R    + +  +  +++ IW ERN
Sbjct: 1415 YTSYVWEALTQRL-LSTNYSRD-WNRLFTLLCTSNLPRDHLFLFRYVFQASIYHIWRERN 1472

Query: 1767 MRLFNKGWRSATRLAEEIIQLVHQKVST 1850
             R   +      RL + I + V  ++S+
Sbjct: 1473 ARRHGEISSPTNRLIKLIDKTVRNRISS 1500


>emb|CAN77580.1| hypothetical protein VITISV_015346 [Vitis vinifera]
          Length = 347

 Score =  322 bits (826), Expect = 7e-85
 Identities = 158/201 (78%), Positives = 182/201 (90%), Gaps = 1/201 (0%)
 Frame = -1

Query: 3322 LPPPYDPFSKKPVIEEPKDRKNLQEIFHKMRTEGLINNAIKMFDALSKDGLTHEAMELFA 3143
            LPPPYDPFSKKP IEEPKD K+LQ+IFHKMRTEGL+ NA+KMFDALSKDGLTHEAMELFA
Sbjct: 147  LPPPYDPFSKKPAIEEPKDPKDLQDIFHKMRTEGLVPNAVKMFDALSKDGLTHEAMELFA 206

Query: 3142 QIKDKGNMPDVVAHTAVIEAYANAGQSKEALKVYMRMLASGVKPNAYTYAVLIIGLARDG 2963
            QIKD G+MPDVVAHTAVIEAYANAGQSKEA+KVYMRML SGV PNAYTY+VLI GLA D 
Sbjct: 207  QIKDHGHMPDVVAHTAVIEAYANAGQSKEAVKVYMRMLTSGVMPNAYTYSVLIKGLAGDA 266

Query: 2962 KLGDAQKYLLEMMGKGIRPNAATYTIVFEAFAREDKMEQGRQLLEKLKAKGFVPDEKAVT 2783
            KLG+A+KY+LEMMGKG+RPNA TYT +FE FA+E K+E+GR+ LE++KAKGF PDEKAV 
Sbjct: 267  KLGEAKKYVLEMMGKGMRPNAGTYTALFEGFAKEQKVEEGREFLEQMKAKGFTPDEKAVR 326

Query: 2782 DHL-SKRGQVFRSVMNLLFHK 2723
            + L ++RGQVFRS+M++LF K
Sbjct: 327  EILKNRRGQVFRSIMDILFGK 347


>ref|XP_002278276.1| PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like
            [Vitis vinifera]
          Length = 307

 Score =  318 bits (816), Expect = 1e-83
 Identities = 157/201 (78%), Positives = 181/201 (90%), Gaps = 1/201 (0%)
 Frame = -1

Query: 3322 LPPPYDPFSKKPVIEEPKDRKNLQEIFHKMRTEGLINNAIKMFDALSKDGLTHEAMELFA 3143
            LPPPYDPFSKK  IEEPKD K+LQ+IFHKMRTEGL+ NA+KMFDALSKDGLTHEAMELFA
Sbjct: 107  LPPPYDPFSKKLAIEEPKDPKDLQDIFHKMRTEGLVPNAVKMFDALSKDGLTHEAMELFA 166

Query: 3142 QIKDKGNMPDVVAHTAVIEAYANAGQSKEALKVYMRMLASGVKPNAYTYAVLIIGLARDG 2963
            QIKD G+MPDVVAHTAVIEAYANAGQSKEA+KVYMRML SGV PNAYTY+VLI GLA D 
Sbjct: 167  QIKDHGHMPDVVAHTAVIEAYANAGQSKEAVKVYMRMLTSGVMPNAYTYSVLIKGLAGDA 226

Query: 2962 KLGDAQKYLLEMMGKGIRPNAATYTIVFEAFAREDKMEQGRQLLEKLKAKGFVPDEKAVT 2783
            KLG+A+KY+LEMMGKG+RPNA TYT +FE FA+E K+E+GR+ LE++KAKGF PDEKAV 
Sbjct: 227  KLGEAKKYVLEMMGKGMRPNAGTYTALFEGFAKEQKVEEGREFLEQMKAKGFTPDEKAVR 286

Query: 2782 DHL-SKRGQVFRSVMNLLFHK 2723
            + L ++RGQVFRS+M++LF K
Sbjct: 287  EILKNRRGQVFRSIMDILFGK 307


>ref|XP_006841544.1| hypothetical protein AMTR_s00003p00166290 [Amborella trichopoda]
            gi|548843565|gb|ERN03219.1| hypothetical protein
            AMTR_s00003p00166290 [Amborella trichopoda]
          Length = 323

 Score =  309 bits (791), Expect = 8e-81
 Identities = 154/200 (77%), Positives = 169/200 (84%)
 Frame = -1

Query: 3322 LPPPYDPFSKKPVIEEPKDRKNLQEIFHKMRTEGLINNAIKMFDALSKDGLTHEAMELFA 3143
            LPPPYDPFSKKPV+EEP+D KNLQEIF+KM++EGLI NAIKMFDALSKDGLTHEAMELF 
Sbjct: 124  LPPPYDPFSKKPVVEEPEDPKNLQEIFYKMKSEGLIPNAIKMFDALSKDGLTHEAMELFG 183

Query: 3142 QIKDKGNMPDVVAHTAVIEAYANAGQSKEALKVYMRMLASGVKPNAYTYAVLIIGLARDG 2963
             IKDKG MPD+VAHTAVIEAYANAGQSKEA+KVY RMLASGVKPNAYTY VLI GL+RDG
Sbjct: 184  VIKDKGQMPDIVAHTAVIEAYANAGQSKEAMKVYTRMLASGVKPNAYTYTVLIKGLSRDG 243

Query: 2962 KLGDAQKYLLEMMGKGIRPNAATYTIVFEAFAREDKMEQGRQLLEKLKAKGFVPDEKAVT 2783
            K  +A K LLEMM KGI+PNA TYT  FE   +E K E+    LEK+KA+GF PDEKA  
Sbjct: 244  KFSEANKILLEMMDKGIKPNAGTYTTFFECLCKEGKTEEAGVYLEKMKARGFAPDEKATR 303

Query: 2782 DHLSKRGQVFRSVMNLLFHK 2723
            + LSKRG VFRSVMNLLF K
Sbjct: 304  EILSKRGHVFRSVMNLLFGK 323


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  307 bits (787), Expect = 2e-80
 Identities = 168/516 (32%), Positives = 272/516 (52%), Gaps = 11/516 (2%)
 Frame = +3

Query: 6    ELARGITRRNHAPFAMLKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFS 185
            EL +   + + +P   +K+DI KAFDS+ W+F+   ++ + FP  FC W+  CI T +FS
Sbjct: 153  ELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFS 212

Query: 186  PLMNGSTCGFFFGKRGLRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLS 365
              +NG   GFF  KRGLRQG  LSPYLF I + +LS  +      +      KC  L+L+
Sbjct: 213  VQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLT 272

Query: 366  HLAFADDVIIFLKPSASTANQLCNILMEFEGWSGLRLNRDKSTIFVAGSN--SGNDLSRI 539
            HL FADD+++F+     +   + NI  EF G SGL ++ +KST+++AG +  + N++   
Sbjct: 273  HLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNILSA 332

Query: 540  LQVKLGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQ 719
                 GQLPV++LGLP++  +++ AD +PL+     K+  W A+ LSYAGRL L+ +V+ 
Sbjct: 333  FPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINSVIV 392

Query: 720  SSYIFWTGAFPIPYSVCSKLESLMGSFLRGKSKLR----LISWATICRPLEEGGLGIRRI 887
            S   FW  A+ +P     ++E L  +FL    +L      I+W ++C+  +EGGLGI+ +
Sbjct: 393  SLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGIKSL 452

Query: 888  KDMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQ 1064
             + NK    KL+W + S + SLWV W+ +  +R  S W+A   + + SW+++++LK R+ 
Sbjct: 453  LEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDV 512

Query: 1065 FANHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSP 1244
              + C   + +G +T FW   W   G L+D       +   IP  AT+  V  +    + 
Sbjct: 513  AKSMCKVEIKSGSSTSFWYDNWSQLGQLVDVTNARRTIDMGIPLAATVATVLAS--HRTK 570

Query: 1245 PSSSPMVRTAWRQFQQI-PKLGCDEEDQFVWSPCPSGL---FSVASAWEQIRHHYDVWEW 1412
               + +      + Q I  +      D F+W          F     W  IR  +   +W
Sbjct: 571  HHRTAIYNKIEAEIQSILQRERSGAPDIFLWRSSGDNFRQSFITKVTWHNIRVIHTHRQW 630

Query: 1413 TELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFGA 1520
             + VWF    PK SF  W  +  +L T D++ ++ +
Sbjct: 631  YKGVWFSYNTPKYSFLLWLAIHDRLSTGDRIKKWNS 666


>ref|NP_001154694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|332003244|gb|AED90627.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 363

 Score =  306 bits (784), Expect = 5e-80
 Identities = 154/201 (76%), Positives = 172/201 (85%), Gaps = 2/201 (0%)
 Frame = -1

Query: 3319 PPPYDPFSKKPVIEEPKDRKNLQEIFHKMRTEGLINNAIKMFDALSKDGLTHEAMELFAQ 3140
            PPPYDPFSKKP IEEP+D KNLQEIFHKMRTEG  N A+KMFDALSKDG THEA+ELF+Q
Sbjct: 163  PPPYDPFSKKPAIEEPEDPKNLQEIFHKMRTEGFTNEAVKMFDALSKDGRTHEALELFSQ 222

Query: 3139 IKDKGNMPDVVAHTAVIEAYANAGQSKEALKVYMRMLASGVKPNAYTYAVLIIGLARDGK 2960
            IKDK  MPDVVAHTA++EAYANAGQ+KE LKV+MRMLASGV PNAYTY+VLI GLA DGK
Sbjct: 223  IKDKNRMPDVVAHTAIVEAYANAGQAKETLKVFMRMLASGVSPNAYTYSVLIKGLAADGK 282

Query: 2959 L-GDAQKYLLEMMGKGIRPNAATYTIVFEAFAREDKMEQGRQLLEKLKAKGFVPDEKAVT 2783
               DA+KYLLEMMG G+ PNAATYT VFEAF RE K E  R+LL+++K KGFVPDEKAV 
Sbjct: 283  THKDAKKYLLEMMGNGMSPNAATYTAVFEAFVREGKEESARELLQEMKGKGFVPDEKAVR 342

Query: 2782 DHLS-KRGQVFRSVMNLLFHK 2723
            + L  KRGQVFR+V+NLLF K
Sbjct: 343  EALEYKRGQVFRTVINLLFDK 363


>emb|CAB83319.1| putative protein [Arabidopsis thaliana]
          Length = 482

 Score =  306 bits (784), Expect = 5e-80
 Identities = 154/201 (76%), Positives = 172/201 (85%), Gaps = 2/201 (0%)
 Frame = -1

Query: 3319 PPPYDPFSKKPVIEEPKDRKNLQEIFHKMRTEGLINNAIKMFDALSKDGLTHEAMELFAQ 3140
            PPPYDPFSKKP IEEP+D KNLQEIFHKMRTEG  N A+KMFDALSKDG THEA+ELF+Q
Sbjct: 144  PPPYDPFSKKPAIEEPEDPKNLQEIFHKMRTEGFTNEAVKMFDALSKDGRTHEALELFSQ 203

Query: 3139 IKDKGNMPDVVAHTAVIEAYANAGQSKEALKVYMRMLASGVKPNAYTYAVLIIGLARDGK 2960
            IKDK  MPDVVAHTA++EAYANAGQ+KE LKV+MRMLASGV PNAYTY+VLI GLA DGK
Sbjct: 204  IKDKNRMPDVVAHTAIVEAYANAGQAKETLKVFMRMLASGVSPNAYTYSVLIKGLAADGK 263

Query: 2959 L-GDAQKYLLEMMGKGIRPNAATYTIVFEAFAREDKMEQGRQLLEKLKAKGFVPDEKAVT 2783
               DA+KYLLEMMG G+ PNAATYT VFEAF RE K E  R+LL+++K KGFVPDEKAV 
Sbjct: 264  THKDAKKYLLEMMGNGMSPNAATYTAVFEAFVREGKEESARELLQEMKGKGFVPDEKAVR 323

Query: 2782 DHLS-KRGQVFRSVMNLLFHK 2723
            + L  KRGQVFR+V+NLLF K
Sbjct: 324  EALEYKRGQVFRTVINLLFDK 344


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  305 bits (781), Expect = 1e-79
 Identities = 174/520 (33%), Positives = 257/520 (49%), Gaps = 12/520 (2%)
 Frame = +3

Query: 54   LKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFSPLMNGSTCGFFFGKRG 233
            +K+DI KA DS+ W F+   +  M FP  F  W+  CI T SFS  +NG   GFF   RG
Sbjct: 149  IKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQSSRG 208

Query: 234  LRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLSHLAFADDVIIFLKPSA 413
            LRQG  LSPYLF I + +LS  L   V          C  + L+HL+FADD++I      
Sbjct: 209  LRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHCKRMGLTHLSFADDLMILTDGQC 268

Query: 414  STANQLCNILMEFEGWSGLRLNRDKSTIFVAG--SNSGNDLSRILQVKLGQLPVKHLGLP 587
             +   +  +   F  WSGL+++ +KSTIF AG  S S   L      ++G+LP+++LGLP
Sbjct: 269  RSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLP 328

Query: 588  VIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQSSYIFWTGAFPIPYSV 767
            ++  +LS  D APL+    +++  W ++ LS+AGR  L+ +++ SS  FW  AF +P + 
Sbjct: 329  LVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRAC 388

Query: 768  CSKLESLMGSFLRG----KSKLRLISWATICRPLEEGGLGIRRIKDMNKAGLCKLLWWIY 935
              ++E L  SFL       SK   ISW  +C+P  EGGLG+R +K+ N     KL+W I 
Sbjct: 389  IQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRII 448

Query: 936  SSKKSLWVQWIHSRFLRNNSIW-TATIPNDVSWVYRRILKIRNQFANHCFNLVGNGDATK 1112
            S   SLWV+W+    L+    W      N  SW++++ILK R      C   VGNG++T 
Sbjct: 449  SHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTS 508

Query: 1113 FWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSSPMVRTAWRQFQQ 1292
            FW   W   G L+D  G    +   I R  ++ +   +                    Q 
Sbjct: 509  FWFDDWSLLGRLIDVAGIRGTIDMGISRTMSVADAWTSRRRRHHRQEILNTIEEVLSTQH 568

Query: 1293 IPKLGCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWEWTELVWFYDKIPKCSFTC 1463
              +    ++ + +W   +      FS  + W  +R   +   W + VWF    PK SF  
Sbjct: 569  QKRTQQQQQGRVLWKGKNDIYKDKFSTKNTWNYLRTTSNEVAWHKGVWFPHATPKYSFCL 628

Query: 1464 WRMLLSKLPTKDKLTRF--GAQSHCELCWAGVESEDHLFF 1577
            W     +L T  ++ ++  G    C  C  G+E+ DHLFF
Sbjct: 629  WLAAHDRLATGARMIKWNRGETGDCTFCRQGIETRDHLFF 668


>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1| AT4g02490
            [Arabidopsis thaliana]
          Length = 657

 Score =  303 bits (777), Expect = 3e-79
 Identities = 169/531 (31%), Positives = 273/531 (51%), Gaps = 14/531 (2%)
 Frame = +3

Query: 54   LKLDIHKAFDSIDWRFIEWAMKRMEFPPRFCRWVMECIKTTSFSPLMNGSTCGFFFGKRG 233
            L++D+ KA+D+++W F+   +K +  PP F  W+  CI T S+S   NG   GFF GK+G
Sbjct: 137  LQVDLTKAYDNVNWEFLINILKALNLPPIFINWIWVCISTPSYSIAYNGELIGFFVGKKG 196

Query: 234  LRQGDPLSPYLFSIGLQMLSSYLQWKVFSKEFEIPSKCSSLNLSHLAFADDVIIFLKPSA 413
            +RQGDP+S +LF + + +L+  L        F +  KC +  ++HL+FADD+++F   S 
Sbjct: 197  IRQGDPMSSHLFVLVMDILARSLDLGAVEGRFVLHPKCLAPMITHLSFADDILVFCDGSL 256

Query: 414  STANQLCNILMEFEGWSGLRLNRDKSTIFVAGSNSGND--LSRILQVKLGQLPVKHLGLP 587
            S+   + +IL  F+  SGL +N  K+ + + G N   +  ++  L V  G LPV++LG+P
Sbjct: 257  SSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIMAASLGVSQGSLPVRYLGVP 316

Query: 588  VIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKAVLQSSYIFWTGAFPIPYSV 767
            ++  K+   D  PLV     +   W A+ LS+AGRL+L+K+V+ S+  FW   F +P   
Sbjct: 317  LMSQKMKKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASIFILPNQC 376

Query: 768  CSKLESLMGSFL----RGKSKLRLISWATICRPLEEGGLGIRRIKDMNKAGLCKLLWWIY 935
              KLE +  +FL       ++   ISW  +C   E GGLG++R+   NK    KL+W ++
Sbjct: 377  LHKLEQMCNAFLWSGAPNSAREAKISWDIVCSSKESGGLGLKRLSSWNKVLALKLIWLLF 436

Query: 936  SSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFANHCFNLVGNGDATKF 1115
            ++  SLWV W                   V WV+R++ K+R          VG+G   +F
Sbjct: 437  TASGSLWVSW-------------------VRWVWRKLCKLREVARPFVICEVGSGITARF 477

Query: 1116 WLHRWHPQGMLLDTFGENCRLFTRIPRRATIKE-VREAGYW-NSPPSSSPMVRTAWRQFQ 1289
            W   W   G L+   G        +   + +++ +R   +W  S  S +P++        
Sbjct: 478  WQDNWTGHGPLIHLTGLTGPQLVGLSITSVVRDAIRNDDWWIASSRSRNPVILLLKSLLP 537

Query: 1290 QIPKL-GCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWEWTELVWFYDKIPKCSF 1457
             +  L  C+ +D ++W      PS  FS A  W  ++       W + VWF +++PK +F
Sbjct: 538  PVGNLVDCEHDDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWHKAVWFTNQVPKHAF 597

Query: 1458 TCWRMLLSKLPTKDKLTRFG--AQSHCELCWAGVESEDHLFFECPFSSEVW 1604
              W    ++L T+D+L  +G    + C LC    E+ DHLFF C FSS +W
Sbjct: 598  ISWVTAWNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHLFFACRFSSRIW 648


>ref|XP_006289785.1| hypothetical protein CARUB_v10003387mg [Capsella rubella]
            gi|482558491|gb|EOA22683.1| hypothetical protein
            CARUB_v10003387mg [Capsella rubella]
          Length = 362

 Score =  302 bits (774), Expect = 7e-79
 Identities = 160/239 (66%), Positives = 184/239 (76%), Gaps = 3/239 (1%)
 Frame = -1

Query: 3430 RFFSSEVDTKNGKT-FAFXXXXXXXXXXXXXXXXXXKLPPPYDPFSKKPVIEEPKDRKNL 3254
            R FSSE    N K  F+                   +LPPPYDPFSKKP IEEP+D KNL
Sbjct: 124  RQFSSETKRVNTKVNFSLSDDDSDEETPVIEDSGKPELPPPYDPFSKKPAIEEPEDAKNL 183

Query: 3253 QEIFHKMRTEGLINNAIKMFDALSKDGLTHEAMELFAQIKDKGNMPDVVAHTAVIEAYAN 3074
            Q IFHKMRTEG  N A+KMFDALSKDG THEA+ELF+QIKDK  MP+VVAHTA++EAYAN
Sbjct: 184  QAIFHKMRTEGFTNEAVKMFDALSKDGRTHEALELFSQIKDKNQMPEVVAHTAIVEAYAN 243

Query: 3073 AGQSKEALKVYMRMLASGVKPNAYTYAVLIIGLARDGK-LGDAQKYLLEMMGKGIRPNAA 2897
            AGQ+KEALKV+MRML+ GV PNAYTY VLI GLA DG+ L DA+KYLLEMMG GI PNAA
Sbjct: 244  AGQAKEALKVFMRMLSCGVLPNAYTYTVLIKGLAADGRTLKDAKKYLLEMMGIGISPNAA 303

Query: 2896 TYTIVFEAFAREDKMEQGRQLLEKLKAKGFVPDEKAVTDHL-SKRGQVFRSVMNLLFHK 2723
            TYT VFEAF +E+K +  RQLL+++K KGFVPDEKAV + L SKRG VFR+V+NLLF+K
Sbjct: 304  TYTPVFEAFVKEEKEDSARQLLQEMKGKGFVPDEKAVREALQSKRGPVFRTVINLLFNK 362