BLASTX nr result
ID: Cocculus23_contig00006523
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00006523
(2131 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 50 4e-10
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 55 8e-10
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 53 5e-09
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 53 1e-08
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 45 2e-08
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 52 2e-08
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta... 50 4e-08
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 48 5e-08
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 43 8e-08
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 55 1e-07
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 46 2e-07
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 46 2e-07
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 49 2e-07
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 49 2e-07
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ... 50 3e-07
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 47 4e-07
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 53 7e-07
gb|ABW81094.1| RT6non-ltr [Cleome spinosa] 48 7e-07
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 49 1e-06
ref|NP_189200.1| RNA-directed DNA polymerase (reverse transcript... 44 1e-06
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 50.4 bits (119), Expect(2) = 4e-10
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +2
Query: 1253 NLRCKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
N CKP EGG GL +K+ + LKL+W + + +LWV W+ + K FW
Sbjct: 416 NQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFW 470
Score = 43.1 bits (100), Expect(2) = 4e-10
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 1434 NSSS*IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWS 1550
N S IWK+IL R +A+R + +G G++ FW D WS
Sbjct: 477 NLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDWS 515
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 55.5 bits (132), Expect(2) = 8e-10
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFWD 1420
CKP +EGG GL +K+ + LKL+W + + +LWV W+ +H ++ FW+
Sbjct: 866 CKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWE 918
Score = 37.0 bits (84), Expect(2) = 8e-10
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 1434 NSSS*IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTG 1589
+ S IWK++L R +A+ + +G G FW D WS + E G G
Sbjct: 924 SQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRG 975
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 52.8 bits (125), Expect(2) = 5e-09
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
CKP EEGG GL +K+ + LKLIW + + +LWV WI K FW
Sbjct: 196 CKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFW 247
Score = 37.0 bits (84), Expect(2) = 5e-09
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 1413 FGTAYPENSS--S*IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKT 1586
F A EN+S S +W++IL R IA + I G FW D WS + ES G
Sbjct: 245 FFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFWYDDWSDLGRLIESAGDR 304
Query: 1587 G 1589
G
Sbjct: 305 G 305
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 53.1 bits (126), Expect(2) = 1e-08
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
CKP EEGG GL +K+ + LKLIW + + +LWV WI K FW
Sbjct: 115 CKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFW 166
Score = 35.4 bits (80), Expect(2) = 1e-08
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 1422 AYPENSS--S*IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTG 1589
A EN+S S +W++IL R IA + I G FW D WS + +S G G
Sbjct: 167 AVRENTSLGSWMWRKILKFRDIARTLCKVEINNGARTSFWYDDWSDLGRLIDSAGDRG 224
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 45.4 bits (106), Expect(2) = 2e-08
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +3
Query: 1413 FGTAYPENSSS*IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTGE 1592
F A + S IWK IL LR +A+R ++ +G G + +W D WS + E++G +G
Sbjct: 908 FWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGP 967
Query: 1593 EV 1598
++
Sbjct: 968 QL 969
Score = 42.4 bits (98), Expect(2) = 2e-08
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFWD 1420
C P EGG GL ++ L+LIW L + +LWV W H + + FW+
Sbjct: 858 CLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWN 910
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 662
Score = 51.6 bits (122), Expect(2) = 2e-08
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
C+P EGG GL IK+ + LKLIW + ++ +LWV WI + K FW
Sbjct: 384 CRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFW 435
Score = 35.8 bits (81), Expect(2) = 2e-08
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 1434 NSSS*IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTGE 1592
+ S +WK++L R A+ + I G+T FW D WS + LG+ G+
Sbjct: 441 SQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDWSSKGRLIDVLGERGQ 493
>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 977
Score = 50.4 bits (119), Expect(2) = 4e-08
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
CKP +EGG GL +K+ + LK++W + + +LWV WI + K+ FW
Sbjct: 823 CKPKKEGGLGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFW 874
Score = 36.2 bits (82), Expect(2) = 4e-08
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 1449 IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTG 1589
+W++++ R A+ + + KG+ FW D WS M E +G G
Sbjct: 886 MWRKLIKFREKAKNFCKVEVNKGNCTSFWYDDWSNMGQMVEKVGDRG 932
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 48.1 bits (113), Expect(2) = 5e-08
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
CKP EGG GL +K+ + + LKL+W + + +LW W+ E+ + W
Sbjct: 513 CKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIW 564
Score = 38.1 bits (87), Expect(2) = 5e-08
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 1449 IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTG 1589
IW++IL +R +A+ + +G G++ FW D WS +++G G
Sbjct: 576 IWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKG 622
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 42.7 bits (99), Expect(2) = 8e-08
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEH-Y*KSYCFWD 1420
C P EGG GL R +R L++IW L + +LWV W +H KS FW+
Sbjct: 756 CLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWN 809
Score = 42.7 bits (99), Expect(2) = 8e-08
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +3
Query: 1452 WKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTG 1589
WK +L LR +AER I+ +G G FW D W+P + LG G
Sbjct: 820 WKCLLRLRVVAERFIRCNVGNGRDASFWFDNWTPFGPLIKFLGNEG 865
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 489
Score = 54.7 bits (130), Expect(2) = 1e-07
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
CKP +EGG GL +K+ + + LKLIW + + +LWV WIH K FW
Sbjct: 248 CKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFW 299
Score = 30.4 bits (67), Expect(2) = 1e-07
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 1422 AYPENSS--S*IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPM 1556
A EN+S S +WK++L R A + + + G FW D WS M
Sbjct: 300 AVRENTSLGSWMWKKVLKFRDAAIQLCKAEVNNGAHTFFWYDNWSDM 346
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 45.8 bits (107), Expect(2) = 2e-07
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +3
Query: 1452 WKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTG 1589
WK +LNLR +AE+ I+ +G G TV FW D W+ + + LG G
Sbjct: 782 WKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVG 827
Score = 38.5 bits (88), Expect(2) = 2e-07
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
C P EGG G + ++ L+LIW L +LW W H FW
Sbjct: 719 CLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFW 770
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 45.8 bits (107), Expect(2) = 2e-07
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +3
Query: 1452 WKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTG 1589
WK +LNLR +AE+ I+ +G G TV FW D W+ + + LG G
Sbjct: 782 WKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVG 827
Score = 38.5 bits (88), Expect(2) = 2e-07
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
C P EGG G + ++ L+LIW L +LW W H FW
Sbjct: 719 CLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFW 770
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 48.9 bits (115), Expect(2) = 2e-07
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
CK +EGG G+ + + ++ + LKLIW L + + +LWVNW+ + + FW
Sbjct: 1008 CKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFW 1059
Score = 35.0 bits (79), Expect(2) = 2e-07
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 1449 IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPM 1556
+WK++LN R +A+ + I G + FW D WS +
Sbjct: 1071 MWKKLLNYRDVAKSMCKVEIKSGSSTSFWYDNWSQL 1106
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 48.5 bits (114), Expect(2) = 2e-07
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
C P EGG GL R+ + ++ +++LIW L K +LW +W H H+ FW
Sbjct: 859 CLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFW 910
Score = 35.4 bits (80), Expect(2) = 2e-07
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 1437 SSS*IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPM 1556
S S WKR+L+LR +A + + +G G +W D W+ +
Sbjct: 917 SDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSL 956
>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana] gi|93007380|gb|ABE97193.1| hypothetical protein
At5g13655 [Arabidopsis thaliana]
Length = 385
Score = 50.4 bits (119), Expect(2) = 3e-07
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
C P EGG GL +++ ++ LKLIW + + K +LWV+W+ +H + W
Sbjct: 25 CTPKSEGGLGLRAVEETNKVCMLKLIWRILSAKGSLWVDWVKKHLLRGGSLW 76
Score = 33.1 bits (74), Expect(2) = 3e-07
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 1422 AYPENSS--S*IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTG 1589
A E SS S IWK++L R A+ + + G++ FW D WS + + G+ G
Sbjct: 77 AVKETSSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSWSSLGCLYDKFGERG 134
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 47.0 bits (110), Expect(2) = 4e-07
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
C P EEGG GL + + ++ LKLIW L + +LWV W+ ++ + FW
Sbjct: 86 CMPKEEGGLGLRSLTEANKVCCLKLIWRLLSSS-SLWVQWLRQYVIRKGSFW 136
Score = 36.2 bits (82), Expect(2) = 4e-07
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 1449 IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPM 1556
+W+++L R +A Q+ I G V FW D WSP+
Sbjct: 148 MWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNWSPL 183
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 53.1 bits (126), Expect(2) = 7e-07
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
CK EEGG GL +K+ + + LKLIW + + + +LWV W+++H + FW
Sbjct: 1013 CKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFW 1064
Score = 29.3 bits (64), Expect(2) = 7e-07
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 1449 IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTG 1589
+W++IL R A + + G FW D W P+ + +G G
Sbjct: 1076 LWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRG 1122
>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
Length = 459
Score = 48.1 bits (113), Expect(2) = 7e-07
Identities = 18/59 (30%), Positives = 35/59 (59%)
Frame = +2
Query: 1253 NLRCKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFWDCLP 1429
N+ C+P +EGG +++++++ LK++W + +LWV W+ + K FWD +P
Sbjct: 202 NIICRPRKEGGLNSKKLEELNKVFRLKMVWRVFKYASSLWVAWLKRNVLKRGSFWDTVP 260
Score = 34.3 bits (77), Expect(2) = 7e-07
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 1455 KRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPMWYW*ESLGKTGEEVRVCP 1610
+++LN++ +A + I+ IG G+ FW D W+ + + +G G + P
Sbjct: 269 RKLLNMKDLAGKFIRCRIGNGNMASFWFDNWTDLGPLLDYIGSDGPRLLRIP 320
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 48.9 bits (115), Expect(2) = 1e-06
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY*KSYCFW 1417
CK +EGG G+ + + ++ + LKLIW L + + +LWVNW+ + + FW
Sbjct: 439 CKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFW 490
Score = 32.7 bits (73), Expect(2) = 1e-06
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 1449 IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSPM 1556
+WK++L R +A+ + I G + FW D WS +
Sbjct: 502 MWKKLLKYRDVAKSMCKVEIKSGSSTSFWYDNWSQL 537
>ref|NP_189200.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332643539|gb|AEE77060.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 282
Score = 43.5 bits (101), Expect(2) = 1e-06
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +3
Query: 1413 FGTAYPENSSS*IWKRILNLRAIAERHIQFLIGKGDTVKFWLDPWSP 1553
F T+ S S WK +L LR +AER ++ IG G T +FW D W+P
Sbjct: 75 FWTSQELVSDSWNWKCLLRLRPLAERFLRCNIGNGLTARFWTDNWTP 121
Score = 38.1 bits (87), Expect(2) = 1e-06
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 1262 CKPMEEGGRGLGRIKDVSRAATLKLIWWLATEKVNLWVNWIHEHY 1396
C P EGG GL + + LKL+W L + +LWV+W H+
Sbjct: 19 CLPKAEGGLGLRWFSEWNTTLNLKLVWRLFSGGGSLWVDWHRYHH 63