BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00006249
         (5089 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29879.3| unnamed protein product [Vitis vinifera]             1868   0.0  
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub...  1858   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...  1753   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...  1673   0.0  
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub...  1665   0.0  
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ...  1659   0.0  
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1645   0.0  
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...  1644   0.0  
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas...  1639   0.0  
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub...  1617   0.0  
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...  1605   0.0  
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub...  1596   0.0  
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub...  1585   0.0  
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me...  1574   0.0  
gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus...  1561   0.0  
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...  1548   0.0  
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab...  1545   0.0  
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana...  1537   0.0  
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr...  1522   0.0  
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub...  1517   0.0  

>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score = 1868 bits (4838), Expect = 0.0
 Identities = 975/1656 (58%), Positives = 1206/1656 (72%), Gaps = 58/1656 (3%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGLYDPALG +D+ T C+SCGQRSF CPGHCGHIDLV  VYNP           K C
Sbjct: 45   PVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTC 104

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVN-DATCH 4731
            FFCHHF+    LV+K  SQLELI KGDVVGAKN+DS SPSE+    ++D  +V+  +T +
Sbjct: 105  FFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVN 164

Query: 4730 SRMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTS 4551
            S      + HL+Q  WTS+Q  EAMS++D F+K K + CK C  K+P +T PTFGW + +
Sbjct: 165  SSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMA 224

Query: 4550 -MPNKSIRENVILGSKLKQPYLGENNVDSDDVESSGAVYDEMSDSATKTYKKSKGSLLTK 4374
             + +   R NVI GSKL++P    N VD+D+  SS A  D + D+ TK  ++       +
Sbjct: 225  GLSDAQTRANVIRGSKLERPL---NGVDTDETHSSIAPTDGIQDTVTKRLERKGAQAPIE 281

Query: 4373 VSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMFFIEAL 4194
              KQ  F  GPL P+E +D ++ LW+NE  LCS IS+I Q+ L    N+  +SMFF+E +
Sbjct: 282  FIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETI 341

Query: 4193 VVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNNS---RVAPRWMELQQSV 4023
            +VPPIKFRPPSKG  SVMEHPQT LL +VLQ N++LGNAH NNS   ++  RWM+LQQS+
Sbjct: 342  LVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSI 401

Query: 4022 NVLFGNKKSTSQ-RDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLAVNEI 3846
            NVLF  K +  Q + + G+GICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPYLAVNEI
Sbjct: 402  NVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEI 461

Query: 3845 GIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKSRNSI 3666
            GIPPYFALRLTYPE+VTPWNV KLR+AIINGPE+HPGAT  +DK +  KL +++K R SI
Sbjct: 462  GIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISI 521

Query: 3665 SRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 3486
            SRKLPSSRGVV QPG+S ++E EGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 522  SRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 581

Query: 3485 EKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTKRGLI 3306
            EKT+RMHYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNANNQYI+P+ GD  RGLI
Sbjct: 582  EKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLI 641

Query: 3305 QDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEIQYLL 3126
            QDHIVSAVLLTK+DTFLT E YN LLY+SG+S+ + G  IGK G+ VS +++EDE+Q LL
Sbjct: 642  QDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGS-GSFIGKPGKKVSVLDSEDEMQPLL 700

Query: 3125 PAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQ------------ 2982
            PAIWKP PLW+GKQVIT++LNH+T  RG +PFT +K   I +EYFGS+            
Sbjct: 701  PAIWKPEPLWSGKQVITAVLNHIT--RGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDP 758

Query: 2981 -------------SGEGKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLST 2841
                          GE K  IHKN  V GVIDK+QF KYGL+H VQELYGS+ AG+LLS 
Sbjct: 759  GSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSV 818

Query: 2840 LSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFER--RVGEQVHAEFLGFKNGDIDEM 2667
            LSRLFTVFLQMHGFTCGVDDLLI  + D+ R    ++   +GE VH +F+G  +G ID +
Sbjct: 819  LSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPV 878

Query: 2666 TLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFF 2487
             LQ E+EK++  NGE+A  RLD+MM +   +LT++VN  L        GL+KPFP+NC  
Sbjct: 879  KLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLLLK-----GLVKPFPKNCLS 933

Query: 2486 LMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRY 2307
            LMT +GAKGS VNF QISS LGQQ+LEGKRVPRM+SGKTLPCFPPWD ++RAGGFISDR+
Sbjct: 934  LMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRF 993

Query: 2306 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVV 2127
            LTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKVCYD+TVRD+DGS+V
Sbjct: 994  LTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIV 1053

Query: 2126 QFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKR 1947
            QF YG+DGVDVH+TSF+++F+ LAVN++VV E      +       +GY+++LP+ L K+
Sbjct: 1054 QFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGK------FNGYIQKLPKELRKK 1107

Query: 1946 TRDFINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTL 1767
            T+ FI    ++   F + +K K             LA+PGEPVGV+AAQS+GEPSTQMTL
Sbjct: 1108 TKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTL 1167

Query: 1766 NTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKV 1587
            NTFH AG+ GEVNVTLGIPRLQEILM A+ +I+TP+MTCPL+ G+++DDA+RLAAKL KV
Sbjct: 1168 NTFHLAGR-GEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKV 1226

Query: 1586 SVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVD 1407
            +VAD+ ESMEV +VPF+V  +Q C++YKLKMKLY P LYP  + ISL+DCEETLE +FV 
Sbjct: 1227 TVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVR 1286

Query: 1406 ELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXX 1227
            ELE AI+ HL +LSKISGIKN L  + S   +ETD+D        G              
Sbjct: 1287 ELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGD----GLAGGNGDEDDDGED 1342

Query: 1226 XXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTET 1047
                      AQKR+ QA DEMDY D + E +         EGEPSAG   E+D V+ E 
Sbjct: 1343 DGGAEDLGLDAQKRKQQASDEMDYGDSEGEPD---------EGEPSAGLTEEIDLVEDEV 1393

Query: 1046 DNDVDDKVQIFDAEDE-SRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEG 870
            +   +++V I D +DE S+  S S +  N+K K++ + KK + +  KK ++R + V+A+G
Sbjct: 1394 EISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKK-RFRAIKKDFDRAILVKAKG 1452

Query: 869  LDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVV------------------ 744
              FEVH RFT+EP+ILL++IAQKAA  VYI+ +G I+ C V+                  
Sbjct: 1453 TYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRE 1512

Query: 743  -----EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQV 579
                 EK K   LQTAGV+F AFW+MQD+LDV  + SN++HA+  T+GVEAARAT+IK+V
Sbjct: 1513 NIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEV 1572

Query: 578  NAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRH-GMAVSTSPLSKMSYETAAEFIIEA 402
              VF  +G+ VNIRHL+L+ADFMT  G YRPM+RH G+A S SP SKM++ETA++FI+EA
Sbjct: 1573 FNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEA 1632

Query: 401  AYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            A HG  D LES SARICLGLPVKMGTGCFDLMQK+E
Sbjct: 1633 ASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1668


>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
            vinifera]
          Length = 1740

 Score = 1858 bits (4814), Expect = 0.0
 Identities = 974/1675 (58%), Positives = 1207/1675 (72%), Gaps = 77/1675 (4%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGLYDPALG +D+ T C+SCGQRSF CPGHCGHIDLV  VYNP           K C
Sbjct: 94   PVPGGLYDPALGSIDENTPCQSCGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTC 153

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVN-DATCH 4731
            FFCHHF+    LV+K  SQLELI KGDVVGAKN+DS SPSE+    ++D  +V+  +T +
Sbjct: 154  FFCHHFKTSSSLVQKYVSQLELISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVN 213

Query: 4730 SRMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTS 4551
            S      + HL+Q  WTS+Q  EAMS++D F+K K + CK C  K+P +T PTFGW + +
Sbjct: 214  SSARDNCSVHLKQQEWTSLQCIEAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFHMA 273

Query: 4550 -MPNKSIRENVILGSKLKQP-------------------YLGENNVDSDDVESSGAVYDE 4431
             + +   R NVI GSKL++P                   +   + VD+D+  SS A  D 
Sbjct: 274  GLSDAQTRANVIRGSKLERPLSRVAEEKSSSEVENVNDMFPWGDGVDTDETHSSIAPTDG 333

Query: 4430 MSDSATKTYKKSKGSLLTKVSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQD 4251
            + D+ TK  ++       +  KQ  F  GPL P+E +D ++ LW+NE  LCS IS+I Q+
Sbjct: 334  IQDTVTKRLERKGAQAPIEFIKQKSFFSGPLLPSEVRDIMERLWENEAELCSFISDILQE 393

Query: 4250 ELCMPENRGNHSMFFIEALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHM 4071
             L    N+  +SMFF+E ++VPPIKFRPPSKG  SVMEHPQT LL +VLQ N++LGNAH 
Sbjct: 394  RLGASGNKAGYSMFFLETILVPPIKFRPPSKGQISVMEHPQTVLLGKVLQANIALGNAHA 453

Query: 4070 NNS---RVAPRWMELQQSVNVLFGNKKSTSQ-RDNAGTGICQLLEKKEGIFRQKLMGKRV 3903
            NNS   ++  RWM+LQQS+NVLF  K +  Q + + G+GICQLLEKKEG+FRQK+MGKRV
Sbjct: 454  NNSERSKIISRWMDLQQSINVLFDGKTAAGQGQRDTGSGICQLLEKKEGVFRQKMMGKRV 513

Query: 3902 NYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLC 3723
            N+ACRSVISPDPYLAVNEIGIPPYFALRLTYPE+VTPWNV KLR+AIINGPE+HPGAT  
Sbjct: 514  NFACRSVISPDPYLAVNEIGIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHY 573

Query: 3722 IDKSTKTKLPLSRKSRNSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNR 3543
            +DK +  KL +++K R SISRKLPSSRGVV QPG+S ++E EGK+VYRHLQDGD+VLVNR
Sbjct: 574  VDKLSTVKLAVNKKMRISISRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNR 633

Query: 3542 QPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIV 3363
            QPTLHKPSIMAHVVRVLKGEKT+RMHYANCSTYNADFDGDEMNVHFPQDEISRAEA NIV
Sbjct: 634  QPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIV 693

Query: 3362 NANNQYIIPTSGDTKRGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIG 3183
            NANNQYI+P+ GD  RGLIQDHIVSAVLLTK+DTFLT E YN LLY+SG+S+ + G  IG
Sbjct: 694  NANNQYIVPSRGDPIRGLIQDHIVSAVLLTKKDTFLTREQYNQLLYSSGLSSGS-GSFIG 752

Query: 3182 KFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIR 3003
            K G+ VS +++EDE+Q LLPAIWKP PLW+GKQVIT++LNH+T  RG +PFT +K   I 
Sbjct: 753  KPGKKVSVLDSEDEMQPLLPAIWKPEPLWSGKQVITAVLNHIT--RGRKPFTTEKDGKIP 810

Query: 3002 KEYFGSQ-------------------------SGEGKFFIHKNYFVHGVIDKSQFGKYGL 2898
            +EYFGS+                          GE K  IHKN  V GVIDK+QF KYGL
Sbjct: 811  REYFGSEIDEKKSGKGKDPGSDRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGL 870

Query: 2897 IHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFER--RV 2724
            +H VQELYGS+ AG+LLS LSRLFTVFLQMHGFTCGVDDLLI  + D+ R    ++   +
Sbjct: 871  VHMVQELYGSNTAGILLSVLSRLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENI 930

Query: 2723 GEQVHAEFLGFKNGDIDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLF 2544
            GE VH +F+G  +G ID + LQ E+EK++  NGE+A  RLD+MM +   +LT++VN  L 
Sbjct: 931  GELVHCKFIGSNHGKIDPVKLQVEVEKIILSNGEAAITRLDRMMKNELNELTSKVNKDLL 990

Query: 2543 PSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLP 2364
                   GL+KPFP+NC  LMT +GAKGS VNF QISS LGQQ+LEGKRVPRM+SGKTLP
Sbjct: 991  LK-----GLVKPFPKNCLSLMTTTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLP 1045

Query: 2363 CFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSL 2184
            CFPPWD ++RAGGFISDR+LTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+L
Sbjct: 1046 CFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNL 1105

Query: 2183 ECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENA 2004
            ECLKVCYD+TVRD+DGS+VQF YG+DGVDVH+TSF+++F+ LAVN++VV E      +  
Sbjct: 1106 ECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGK-- 1163

Query: 2003 QFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGE 1824
                 +GY+++LP+ L K+T+ FI    ++   F + +K K             LA+PGE
Sbjct: 1164 ----FNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQKDFVNLVKQKYISSLAQPGE 1219

Query: 1823 PVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPL 1644
            PVGV+AAQS+GEPSTQMTLNTFH AG+ GEVNVTLGIPRLQEILM A+ +I+TP+MTCPL
Sbjct: 1220 PVGVLAAQSVGEPSTQMTLNTFHLAGR-GEVNVTLGIPRLQEILMTAANDIKTPIMTCPL 1278

Query: 1643 RRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPR 1464
            + G+++DDA+RLAAKL KV+VAD+ ESMEV +VPF+V  +Q C++YKLKMKLY P LYP 
Sbjct: 1279 QMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPP 1338

Query: 1463 FSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSK 1284
             + ISL+DCEETLE +FV ELE AI+ HL +LSKISGIKN L  + S   +ETD+D    
Sbjct: 1339 HTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGD 1398

Query: 1283 RKQAGXXXXXXXXXXXXXXXXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENI 1104
                G                        AQKR+ QA DEMDY D + E +         
Sbjct: 1399 ----GLAGGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGDSEGEPD--------- 1445

Query: 1103 EGEPSAGSESEVDQVDTETDNDVDDKVQIFDAEDE-SRARSVSGAKLNEKHKSDHEGKKT 927
            EGEPSAG   E+D V+ E +   +++V I D +DE S+  S S +  N+K K++ + KK 
Sbjct: 1446 EGEPSAGLTEEIDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEAKRKK- 1504

Query: 926  KPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSV 747
            + +  KK ++R + V+A+G  FEVH RFT+EP+ILL++IAQKAA  VYI+ +G I+ C V
Sbjct: 1505 RFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDLCQV 1564

Query: 746  V-----------------------EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIH 636
            +                       EK K   LQTAGV+F AFW+MQD+LDV  + SN++H
Sbjct: 1565 IDCNKDQVIYYGRDPKKRENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVYSNNVH 1624

Query: 635  AIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRH-GMAVS 459
            A+  T+GVEAARAT+IK+V  VF  +G+ VNIRHL+L+ADFMT  G YRPM+RH G+A S
Sbjct: 1625 AMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHGGIAES 1684

Query: 458  TSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
             SP SKM++ETA++FI+EAA HG  D LES SARICLGLPVKMGTGCFDLMQK+E
Sbjct: 1685 VSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1739


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score = 1753 bits (4539), Expect = 0.0
 Identities = 943/1666 (56%), Positives = 1166/1666 (69%), Gaps = 68/1666 (4%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGLYDPALGPL + T+C++CGQRS  CPGHCGHIDLV PVYNP           + C
Sbjct: 48   PVPGGLYDPALGPLSERTICKTCGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTC 107

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            F C HFR +   VEKC  QLELI+KGD+VGAK ++S SPSEAL   E+D  + +  T HS
Sbjct: 108  FLCFHFRMQRGQVEKCIKQLELIVKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHS 167

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTS- 4551
             +   + +H  Q  WTS+Q  EAMS+L+ F+K K K CK C   NP+IT PTFGW +TS 
Sbjct: 168  GVQCNDGEHTRQQGWTSLQFTEAMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHTSG 227

Query: 4550 MPNKSIRENVILGSKLKQPYLGENNVDSDDVESSGAVYDEMSDSATKTYKKSKGSLLTKV 4371
            M + SIR NVI G +L    LG     + DVE +    D+   S TK +KK +   + + 
Sbjct: 228  MSDASIRANVITGHQLGG-LLGSEIEGTTDVEDAAEPGDQ--HSGTKKHKKKERKEVLEF 284

Query: 4370 SKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMFFIEALV 4191
            ++Q       L P+E K++++LLW+NE R+CS IS++QQ E    + +   +MFF+E ++
Sbjct: 285  TRQKSTFSKQLLPSEVKEKLELLWKNEARICSFISDLQQQEF--GKRKAGPAMFFLETIL 342

Query: 4190 VPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMN--NSRVAPRWMELQQSVNV 4017
            VPPIKFRPP+KGG SVMEHPQT LLS+VLQ N+SLG+AH+N  +S++  RW++LQQS+N 
Sbjct: 343  VPPIKFRPPTKGGDSVMEHPQTVLLSKVLQSNISLGDAHINKEHSKIVRRWLDLQQSINT 402

Query: 4016 LFGNK--KSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLAVNEIG 3843
            LF +K  K   QR+ A  GICQLLEKKEG+FRQK+MGKRVNYACRSVISPDPY+ VNEIG
Sbjct: 403  LFDSKTAKGPGQREGA-PGICQLLEKKEGLFRQKMMGKRVNYACRSVISPDPYIGVNEIG 461

Query: 3842 IPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKSRNSIS 3663
            IPP FA++LTYPERVTPWN+ KLRNA+ING E HPGAT  +DK +  KLP +RK+R SIS
Sbjct: 462  IPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKARISIS 521

Query: 3662 RKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 3483
            RKLPSSRG V Q GK  E E EGK+VYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE
Sbjct: 522  RKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 581

Query: 3482 KTIRMHYANCS-TYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTKRGLI 3306
            KT+RMHYANCS TYNADFDGDEMNVHFPQDE+SRAEA NIVNANNQ++ P++G+  RGLI
Sbjct: 582  KTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGLI 641

Query: 3305 QDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEIQYLL 3126
            QDHIVSAVLLTK+DTFL+ +++N LLY+SGVS        G+ GQ V    +EDEIQ L 
Sbjct: 642  QDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTLP 701

Query: 3125 PAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQSGEG-------- 2970
            PAIWKP PLWTGKQVIT+ILNH+T      PFTV+K + I   +F S++ E         
Sbjct: 702  PAIWKPKPLWTGKQVITAILNHITSDH--PPFTVEKDAKIPSNFFKSRANEDKPCQEEKS 759

Query: 2969 -------------KFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRL 2829
                         K  ++KN  V GVIDK QFG+YGL+HTV EL GSH AG+LLS LSRL
Sbjct: 760  DKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVLSRL 819

Query: 2828 FTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFKNG--DIDEMTL 2661
            FT +LQMHGFTCGVDDLLI+ + D ER K  E   + GE VH  F+G K+    ID + +
Sbjct: 820  FTAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIKIDPVAM 879

Query: 2660 QEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFP---SNSSPVGLLKPFPRNCF 2490
            Q  IEK +R +G+SA A LD+ MS       NE+N K      SN    GLLKP  +NC 
Sbjct: 880  QLNIEKTIRSDGDSALAYLDRQMS-------NELNTKTSSGVISNLLSDGLLKPSGKNCI 932

Query: 2489 FLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDR 2310
             LMT SGAKGS+VNFQQISS LGQQELEGKRVPRM+SGKTLPCF PWD ++R+GG+I+DR
Sbjct: 933  SLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDR 992

Query: 2309 YLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSV 2130
            +LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLK+ YDHTVRDADGSV
Sbjct: 993  FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSV 1052

Query: 2129 VQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEK 1950
            VQF YGEDGVDVH+TSF++KFK LA+NQ ++      +    Q    + Y+ ELPEAL++
Sbjct: 1053 VQFYYGEDGVDVHQTSFIAKFKELALNQDMIY-----KRSGGQLGAFNSYISELPEALKE 1107

Query: 1949 RTRDFINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMT 1770
            +   F++  S       +  K + +           LA+PGEPVGV+AAQS+GEPSTQMT
Sbjct: 1108 KADRFLDDFSIMGRIASNLVKREDLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMT 1167

Query: 1769 LNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMK 1590
            LNTFH AG+ GE+NVTLGIPRLQEILM AS +I+TP+MTCPL+ G+T +DAD LA KL K
Sbjct: 1168 LNTFHLAGR-GEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQEGRTNEDADHLADKLRK 1226

Query: 1589 VSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFV 1410
            V+VAD+VESMEV VVPF++     C +YKLKMKLY P  YP++++IS++D EETLE++F+
Sbjct: 1227 VTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFL 1286

Query: 1409 DELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXX 1230
             ELE AI+ H+ +LS+ISGIK+ L  + S    E D+D+                     
Sbjct: 1287 RELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGDMSH----REERDDDNDDD 1342

Query: 1229 XXXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTE 1050
                       AQKR+ QA DEMDY DD  E E++    E+   E  +G ESE+DQ D E
Sbjct: 1343 DGERADDLGLDAQKRKLQATDEMDY-DDGFEEELN--EGESTASEEESGFESEIDQGDNE 1399

Query: 1049 TD--NDV---DDKVQIFDAEDESRARSVSGAKLNEKHKSDHEGKKTKPK-----RAKKSW 900
            T+  NDV   ++  +       S+ +S   A  +  H    + KK KPK     R  K +
Sbjct: 1400 TEISNDVMLDNEASETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAKRKSRISKDF 1459

Query: 899  ERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVVE------- 741
            +R +FVEA  + FEVH +FT+EP+ILL+EIAQK AK VYI+  G I QC V +       
Sbjct: 1460 DRAIFVEARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVTDCKESQVI 1519

Query: 740  ----------------KDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVE 609
                            K+K   L   GV+F  FW+MQD LDV  I SN+IHA+ +TYGVE
Sbjct: 1520 YYGKDPKERVDLKPDVKEKVPALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVE 1579

Query: 608  AARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSR-HGMAVSTSPLSKMSY 432
            AAR T+I+++N VF+ +GI+V+ RHL+L+ADFMT  G YRPMSR  G+A S SP SKMS+
Sbjct: 1580 AARETIIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSF 1639

Query: 431  ETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            ETA++FI+EAA HGE+D LE+PSARICLGLPVKMGTG FDLMQK+E
Sbjct: 1640 ETASKFIVEAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLE 1685


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score = 1673 bits (4333), Expect = 0.0
 Identities = 923/1685 (54%), Positives = 1141/1685 (67%), Gaps = 87/1685 (5%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGLYD  LGPL+D T C+SCG     CPGHCGHIDLV P+YNP           + C
Sbjct: 45   PMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRIC 104

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            FFC+HFR E   VE+C SQL+LI  GD+VGAK +DS S   +  S  N+    + +  H+
Sbjct: 105  FFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSIVHN 164

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTS- 4551
                  ++ ++   WTS+Q  EAMS+L+ F+K K   CK C  KNP+IT P FGW++ + 
Sbjct: 165  ------SEAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNG 218

Query: 4550 MPNKSIRENVILGSKLKQPY---LGENNVDSDDVESSGAVYD--EM---------SDSAT 4413
            M    +RENVI G K+   +    G    D+DDV SSG   D  EM         S+   
Sbjct: 219  MLGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNG 278

Query: 4412 KTYKKSKGSLLTKVSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPE 4233
               +K K  +  +  KQ     GPL P+E K   KLLW+NE  LCS+IS+IQQ       
Sbjct: 279  AKARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---G 335

Query: 4232 NRGNHSMFFIEALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNNSR-- 4059
             +  +SMFF+E ++VPPIKFR P+KGG SVMEHPQT LLS+VLQ N+SLGNA+ NN +  
Sbjct: 336  KKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSS 395

Query: 4058 --VAPRWMELQQSVNVLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRS 3885
              V   WM+LQQSVN+LF +K + SQ  +  +GICQLLEKKEG+FRQK+MGKRVN+ACRS
Sbjct: 396  KAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRS 455

Query: 3884 VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTK 3705
            VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV KLR AIING E HPGAT  +DK + 
Sbjct: 456  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLST 515

Query: 3704 TKLPLSRKSRNSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHK 3525
             +LP S+K+R SISRKLPSSRG + QPGK+L++E EGK+V RHLQDGDVVLVNRQPTLHK
Sbjct: 516  KRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHK 575

Query: 3524 PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQY 3345
            PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNANNQY
Sbjct: 576  PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQY 635

Query: 3344 IIPTSGDTKRGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNV 3165
            + P++G+  R LIQDHIVSAVLLTKRDTFL+ +++N LLY+SGVS+ A+    GK GQ V
Sbjct: 636  VRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKV 695

Query: 3164 SSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGS 2985
                +E+ +  ++PAI KP PLWTGKQVI+S+L+H+TR  G  PFTV K + I +++F +
Sbjct: 696  FVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHITR--GRPPFTVGKTAKIPRDFFRN 753

Query: 2984 QSG-------------------------------EGKFFIHKNYFVHGVIDKSQFGKYGL 2898
            +                                 E K  I++N  V GVIDK+QF  YGL
Sbjct: 754  RRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGL 813

Query: 2897 IHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE---RR 2727
            +HTVQELYGS+ AG+LLS  SRLFTVFLQMHGFTCGVDDLLI++  D+ER K  E   ++
Sbjct: 814  VHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKK 873

Query: 2726 VGEQVHAEFLGFKNGDIDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKL 2547
            V E  H E  G K     E  LQ EIE+ +R +GE+A   LD+ M S    + NE + K 
Sbjct: 874  VTE-AHYELFGVKVNS--ETELQLEIERTIRRDGETALTALDRKMIS----VLNENSSKG 926

Query: 2546 FPSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTL 2367
              +     GL+K    NC  LMT SGAKGS+VNFQQISS LGQQELEGKRVPRM+SGKTL
Sbjct: 927  VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTL 986

Query: 2366 PCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKS 2187
            PCF PWD ++RAGGFISDR+L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+
Sbjct: 987  PCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1046

Query: 2186 LECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSEN 2007
            LECLK+ YDHTVRDADGS+VQF YGEDG+DVH+TSF++KF+ LA+NQ ++ E L      
Sbjct: 1047 LECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLC----- 1101

Query: 2006 AQFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSR-KPKGIXXXXXXXXXXXLAEP 1830
            +Q    D   K LP+ L  +   FI +  KK   ++H + KPK             LA+P
Sbjct: 1102 SQLGEPDDSDKILPDGLRSKAEQFIREEIKK---YQHQKIKPKDFLNLLKLKFLSSLAQP 1158

Query: 1829 GEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTC 1650
            GEPVGV+AAQS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEILM AS +I+TPVMTC
Sbjct: 1159 GEPVGVLAAQSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEILMTASIDIRTPVMTC 1217

Query: 1649 PLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELY 1470
            PL +GKT++DA  LA K+ K++VAD++ESMEV V PF+V     C++YKLKM L  P+ Y
Sbjct: 1218 PLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKY 1277

Query: 1469 PRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLG 1290
               SDI++KDCE  L+++F+ ELE AI+ HL +LSKISGIK  +  ++     E D+D+ 
Sbjct: 1278 FENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVS 1337

Query: 1289 SKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSE 1110
              R +                          AQK++ Q  DEMDYEDD   +E+     E
Sbjct: 1338 EGRSRE-TKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDD---SEV-----E 1388

Query: 1109 NIEGEPSAGSESEVDQVDTET----------DNDVDDKVQIF-DAEDESRARSVSGAKLN 963
              EG   A  ESE+D  + ET          DN  D+  Q   + E+ S  +S       
Sbjct: 1389 QNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKS-----RE 1443

Query: 962  EKHKSDHEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVY 783
            EK  S+ + KK K K  +K  +R +F    GL FEVH +  +EP+ILL++IA+K AK VY
Sbjct: 1444 EKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVY 1503

Query: 782  IKRAGNINQCSVV---------------------EKDKECELQTAGVNFQAFWEMQDDLD 666
            I+  G I+QC V                      +K+K   L T GV+F AFW+M+D +D
Sbjct: 1504 IQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHID 1563

Query: 665  VNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRP 486
            V  + SN IHA+  TYGVEAAR T+I++++ VF  +GI+VNIRHLTL+ADFMT  GRYRP
Sbjct: 1564 VRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRP 1623

Query: 485  MSR-HGMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDL 309
            MSR  G+A S SP SKMS+ETA++FI+EAA HG VD LE+PS+RICLGLPVKMGTG FDL
Sbjct: 1624 MSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDL 1683

Query: 308  MQKVE 294
            MQKVE
Sbjct: 1684 MQKVE 1688


>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
            max]
          Length = 1651

 Score = 1665 bits (4311), Expect = 0.0
 Identities = 906/1655 (54%), Positives = 1130/1655 (68%), Gaps = 57/1655 (3%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P P GLYD ALGP DD +LC+SCGQ S  CPGH GHI+LV PVYNP           + C
Sbjct: 45   PVPDGLYDAALGPFDDKSLCKSCGQTSKHCPGHFGHIELVSPVYNPLMFNILSNILQRTC 104

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLS-RENDSVNVNDATCH 4731
            F CHHFR   + V+  +SQLELI+KGD++ AK ++S  P +++ S   ++S++  D    
Sbjct: 105  FTCHHFRAPSKEVDIRTSQLELIMKGDIIRAKRLESIIPGKSVDSFNPDESIHPGDG--- 161

Query: 4730 SRMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTS 4551
                 +  + L ++ WTS+Q  EAMS+L   + +K K C++CG KNP I+ PTFGW +  
Sbjct: 162  DESQCYSAEQLGEN-WTSLQFSEAMSVLRKLLTKKHKKCQKCGAKNPKISKPTFGWFHM- 219

Query: 4550 MPNKSIRENVILGSKLKQPYLG--ENNVDSDDVESSGA----VYDEMSDSATKTYKKSKG 4389
                    NV+   + +   +   E+   +DD+   G     V D  S    K  K+ K 
Sbjct: 220  --------NVLSADETRADTIRSVESETTNDDISLGGGDTTDVEDITSAGTAKRDKRKKE 271

Query: 4388 SLLTKVSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMF 4209
             L  K+++Q K S G L P++ K  ++LLW+NE RLCS I++IQ         +  HSMF
Sbjct: 272  KLSYKLAEQNKLS-GSLLPSQVKGILELLWENEARLCSYINDIQDQGF---GKKAGHSMF 327

Query: 4208 FIEALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNNS---RVAPRWME 4038
            F+E + VPPIKFRPP+KGG +VMEHPQT LL++VLQCN+SLG+AH+N S   +V  RWM+
Sbjct: 328  FLENIFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQCNISLGDAHLNKSDPSKVLSRWMD 387

Query: 4037 LQQSVNVLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLA 3858
            LQQSVN+LF NK ++ +RD A TGICQLLEKKEGIFRQK+MGKRVN+ACRSVISPDPYLA
Sbjct: 388  LQQSVNMLFDNKTASGKRDVA-TGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLA 446

Query: 3857 VNEIGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKS 3678
            VNEIGIPPYFALRL+YPERVTPWNV KLRNAI+NGPE HPGAT   DK +  KLP   K 
Sbjct: 447  VNEIGIPPYFALRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKL 506

Query: 3677 RNSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 3498
             +  SRKLP+SRGV++  GK  +HE EGKVVYRHL+DGDVVLVNRQPTLHKPSIMAH+VR
Sbjct: 507  LSLTSRKLPTSRGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVR 566

Query: 3497 VLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTK 3318
            VLKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNANNQY+ PTSGD  
Sbjct: 567  VLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPI 626

Query: 3317 RGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEI 3138
            R LIQDHIVSA LLTK+DTFL++E++N LLY+SGVS A  G   GK GQ V   N+E E+
Sbjct: 627  RALIQDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEM 686

Query: 3137 QYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQSGEG---- 2970
                PAIWKP PLWTGKQVI+++L ++T  RG  PFT +K + I   +F +Q  +G    
Sbjct: 687  FLFPPAIWKPEPLWTGKQVISALLYYIT--RGSPPFTAEKNAKIPSNFFKTQIRKGKRYT 744

Query: 2969 -------------KFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRL 2829
                         K  I+KN  V GV+DK+QFG YG+IHTVQELYGS+ AG LLS LSRL
Sbjct: 745  EDTSKKKDKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRL 804

Query: 2828 FTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFKNGD-IDEMTLQ 2658
            FT FLQMHGFTCGVDDL++ +  D+ER    +    +G+ VH EF+G KN D ID +TLQ
Sbjct: 805  FTTFLQMHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDNIDPVTLQ 864

Query: 2657 EEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMT 2478
              IEK +R NGE+A     KM S+ N++ ++ +  KL        G+LKP  +NC  LMT
Sbjct: 865  LNIEKKIRSNGEAALTLDRKMTSNLNSRTSSGILKKLLSE-----GILKPSGKNCISLMT 919

Query: 2477 ASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTG 2298
             SGAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCFPPWD S RAGGFI DR+LT 
Sbjct: 920  TSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTA 979

Query: 2297 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFC 2118
            L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKVCYDHTVRDADGS++QF 
Sbjct: 980  LHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFH 1039

Query: 2117 YGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRD 1938
            YGEDGVDVH+TSF+++F  L+ N+++V      Q +      S  Y+ +LPEALE +   
Sbjct: 1040 YGEDGVDVHQTSFITEFGALSTNKELVFSNYCRQLD-----RSSPYINKLPEALEGKA-- 1092

Query: 1937 FINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTLNTF 1758
               K SK+ +    S +               LA+PGEPVGV+A+QS+GEP+TQMTLNTF
Sbjct: 1093 --EKFSKQRN--LGSMEQADFLRLMEHKYVSCLAQPGEPVGVLASQSVGEPATQMTLNTF 1148

Query: 1757 HHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVA 1578
            H AG+ GE+NVTLGIPRLQEILM A+ +I+TP MTCPLR  K+  DA  LA KL K++VA
Sbjct: 1149 HLAGR-GEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHDKSMKDAICLADKLKKITVA 1207

Query: 1577 DLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELE 1398
            D+++SM+V VVP +V   Q C++YKL MKLY  + YP ++DI+L D EETL + FV ELE
Sbjct: 1208 DIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDDWEETLRVNFVRELE 1267

Query: 1397 RAIRTHLTMLSKISGIKNIL---QRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXX 1227
             AI+ H+T+LSKISGIK      Q N S   E+   +     K+                
Sbjct: 1268 DAIQNHMTLLSKISGIKKFKTDPQSNYSNSSEDAHSNGSESEKKGQNNDDDDEDGGGVED 1327

Query: 1226 XXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTET 1047
                      AQKR+ Q  DE+DYED   E       SE IEG+      S+VD    E 
Sbjct: 1328 TEGYEDLGSDAQKRKLQGTDEVDYEDGPEEETHDGELSEEIEGDEDG---SDVDA--NEN 1382

Query: 1046 DNDVDDKVQIFDAEDESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEGL 867
             N+V D       E  S+++++     +EK     E KK++P    K ++R +FVEA+G 
Sbjct: 1383 YNNVTDANNSEGLEKPSKSKTI-----DEKQNLKREKKKSEP--TTKKYDRAIFVEAKGK 1435

Query: 866  DFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVV------------------- 744
             FE+H RFT EP+ILL++IAQ+ AK V I+  G + +C  +                   
Sbjct: 1436 HFEIHFRFTGEPHILLTQIAQRTAKKVCIQNFGKVGECKAITCKESGVIYYGKDGRKRIE 1495

Query: 743  ----EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQVN 576
                EK++   LQT+GV+F+ FWE++DDLDV  I SN++HA+   YGVEAAR T+I++V 
Sbjct: 1496 ISASEKEQIPALQTSGVHFKTFWELEDDLDVRYIYSNNVHAMLNAYGVEAARETIIREVQ 1555

Query: 575  AVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAVSTSPLSKMSYETAAEFIIEAA 399
             VF+ +GISVNIRHLTL+ADFMT  G YRPM+R G +A STSP  KM +ETA  FI+EAA
Sbjct: 1556 NVFKSYGISVNIRHLTLIADFMTHTGSYRPMNRTGSIADSTSPFIKMCFETAGNFIVEAA 1615

Query: 398  YHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            YHG+VD LE+PSARICLGLPVKMGTGC DL+QK+E
Sbjct: 1616 YHGQVDNLETPSARICLGLPVKMGTGCHDLIQKLE 1650


>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
            gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
            putative isoform 1 [Theobroma cacao]
          Length = 1665

 Score = 1659 bits (4297), Expect = 0.0
 Identities = 912/1685 (54%), Positives = 1137/1685 (67%), Gaps = 87/1685 (5%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGLYD  LGPL+D T C+SCG     CPGHCGHIDLV P+YNP           + C
Sbjct: 45   PMPGGLYDAVLGPLEDRTPCKSCGLLKLHCPGHCGHIDLVSPIYNPLLFNFLHTLLQRIC 104

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            FFC+HFR E   VE+C SQL+LI  GD+VGAK +DS S   +  S  N+    + +  H+
Sbjct: 105  FFCYHFRAEKTEVERCVSQLKLIGNGDIVGAKRLDSDSADASSYSDYNEGSQESGSIVHN 164

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTS- 4551
                  ++ ++   WTS+Q  EAMS+L+ F+K K   CK C  KNP+IT P FGW++ + 
Sbjct: 165  ------SEAVKPKEWTSLQLMEAMSVLNNFLKLKYNKCKNCDAKNPNITKPVFGWLHMNG 218

Query: 4550 MPNKSIRENVILGSKLKQPY---LGENNVDSDDVESSGAVYD--EM---------SDSAT 4413
            M    +RENVI G K+   +    G    D+DDV SSG   D  EM         S+   
Sbjct: 219  MLGAQMRENVIRGCKMVDTFSDEAGSGLEDADDVSSSGNGVDIAEMDTSEIGFTGSEGNG 278

Query: 4412 KTYKKSKGSLLTKVSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPE 4233
               +K K  +  +  KQ     GPL P+E K   KLLW+NE  LCS+IS+IQQ       
Sbjct: 279  AKARKKKAQVPLEFMKQKNLFSGPLLPSEVKKITKLLWENEVELCSIISDIQQQGF---G 335

Query: 4232 NRGNHSMFFIEALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNNSR-- 4059
             +  +SMFF+E ++VPPIKFR P+KGG SVMEHPQT LLS+VLQ N+SLGNA+ NN +  
Sbjct: 336  KKVGYSMFFLETILVPPIKFRAPTKGGDSVMEHPQTVLLSKVLQANISLGNAYTNNLQSS 395

Query: 4058 --VAPRWMELQQSVNVLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRS 3885
              V   WM+LQQSVN+LF +K + SQ  +  +GICQLLEKKEG+FRQK+MGKRVN+ACRS
Sbjct: 396  KAVVRLWMDLQQSVNLLFDSKTAMSQGRDVSSGICQLLEKKEGMFRQKMMGKRVNFACRS 455

Query: 3884 VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTK 3705
            VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV KLR AIING E HPGAT  +DK + 
Sbjct: 456  VISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLST 515

Query: 3704 TKLPLSRKSRNSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHK 3525
             +LP S+K+R SISRKLPSSRG + QPGK+L++E EGK+V RHLQDGDVVLVNRQPTLHK
Sbjct: 516  KRLPPSQKARISISRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHK 575

Query: 3524 PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQY 3345
            PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNANNQY
Sbjct: 576  PSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQY 635

Query: 3344 IIPTSGDTKRGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNV 3165
            + P++G+  R LIQDHIVSAVLLTKRDTFL+ +++N LLY+SGVS+ A+    GK GQ V
Sbjct: 636  VRPSNGEPIRALIQDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKV 695

Query: 3164 SSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGS 2985
                +E+ +  ++PAI KP PLWTGKQVI+S+L+H+T  RG  PFTV K + I +++F +
Sbjct: 696  FVSTSEEGMLPIIPAILKPKPLWTGKQVISSVLSHIT--RGRPPFTVGKTAKIPRDFFRN 753

Query: 2984 -------------------------------QSGEGKFFIHKNYFVHGVIDKSQFGKYGL 2898
                                           +  E K  I++N  V GVIDK+QF  YGL
Sbjct: 754  RRNKNKQSSREENQPKNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGL 813

Query: 2897 IHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRV 2724
            +HTVQELYGS+ AG+LLS  SRLFTVFLQMHGFTCGVDDLLI++  D+ER K  E   + 
Sbjct: 814  VHTVQELYGSNTAGILLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKK 873

Query: 2723 GEQVHAEFLGFK-NGDIDEMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKL 2547
              + H E  G K N +     LQ EIE+ +R +GE+A   LD+ M S    + NE + K 
Sbjct: 874  VTEAHYELFGVKVNSETAPTELQLEIERTIRRDGETALTALDRKMIS----VLNENSSKG 929

Query: 2546 FPSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTL 2367
              +     GL+K    NC  LMT SGAKGS+VNFQQISS LGQQELEGKRVPRM+SGKTL
Sbjct: 930  VLTELLSEGLVKSMGENCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTL 989

Query: 2366 PCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKS 2187
            PCF PWD ++RAGGFISDR+L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+
Sbjct: 990  PCFHPWDWAARAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN 1049

Query: 2186 LECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSEN 2007
            LECLK+ YDHTVRDADGS+VQF YGEDG+DVH+TSF++KF+ LA+NQ ++ E L      
Sbjct: 1050 LECLKISYDHTVRDADGSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLC----- 1104

Query: 2006 AQFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSR-KPKGIXXXXXXXXXXXLAEP 1830
            +Q    D   K LP+ L  +   FI +  KK   ++H + KPK             LA+P
Sbjct: 1105 SQLGEPDDSDKILPDGLRSKAEQFIREEIKK---YQHQKIKPKDFLNLLKLKFLSSLAQP 1161

Query: 1829 GEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTC 1650
            GEPVGV+AAQS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEILM AS +I+TPVMTC
Sbjct: 1162 GEPVGVLAAQSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEILMTASIDIRTPVMTC 1220

Query: 1649 PLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELY 1470
            PL +GKT++DA  LA K+ K++VAD++ESMEV V PF+V     C++YKLKM L  P+ Y
Sbjct: 1221 PLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPDKY 1280

Query: 1469 PRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLG 1290
               SDI++KDCE  L+++F+ ELE AI+ HL +LSKISGIK  +  ++     E D+D+ 
Sbjct: 1281 FENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDEDVS 1340

Query: 1289 SKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSE 1110
              R +                                + +++ D +DDD ++E     +E
Sbjct: 1341 EGRSR--------------------------------ETKNDDDDDDDDADDEER---AE 1365

Query: 1109 NIEGEPSAGSESEVDQVDTET----------DNDVDDKVQIF-DAEDESRARSVSGAKLN 963
            ++ G   A  ESE+D  + ET          DN  D+  Q   + E+ S  +S       
Sbjct: 1366 DL-GASLAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNPKS-----RE 1419

Query: 962  EKHKSDHEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVY 783
            EK  S+ + KK K K  +K  +R +F    GL FEVH +  +EP+ILL++IA+K AK VY
Sbjct: 1420 EKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVY 1479

Query: 782  IKRAGNINQCSVV---------------------EKDKECELQTAGVNFQAFWEMQDDLD 666
            I+  G I+QC V                      +K+K   L T GV+F AFW+M+D +D
Sbjct: 1480 IQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQALHTTGVDFGAFWKMEDHID 1539

Query: 665  VNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRP 486
            V  + SN IHA+  TYGVEAAR T+I++++ VF  +GI+VNIRHLTL+ADFMT  GRYRP
Sbjct: 1540 VRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRP 1599

Query: 485  MSR-HGMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDL 309
            MSR  G+A S SP SKMS+ETA++FI+EAA HG VD LE+PS+RICLGLPVKMGTG FDL
Sbjct: 1600 MSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDL 1659

Query: 308  MQKVE 294
            MQKVE
Sbjct: 1660 MQKVE 1664


>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            RPA1-like [Cucumis sativus]
          Length = 1652

 Score = 1645 bits (4259), Expect = 0.0
 Identities = 901/1657 (54%), Positives = 1133/1657 (68%), Gaps = 59/1657 (3%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P  GGLYDPA+G LD+ TLC+SCGQR F CPGHCGHIDLV PVYNP             C
Sbjct: 51   PVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTC 110

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            F CHHFR    +VE C + LELI+ G++  AK +            E + +N    T  S
Sbjct: 111  FSCHHFRAGESMVENCKTLLELILDGEIAKAKEL------------EEEWMNSKSRTKSS 158

Query: 4727 R-MHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTS 4551
              M+ +E K+ +  +WTS+Q  EA+S++  F+K K+ +CK CG K+P IT PTFGW +  
Sbjct: 159  HSMYTYERKNGQPETWTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMK 218

Query: 4550 -MPNKSIRENVILGSKLKQPYLGENNVDSDDVESSG-AVYDEMSDSATKTYKKSKGSLLT 4377
             +     R N I  SK      G   V S + E++  A  ++  D + + +         
Sbjct: 219  GLAGVQKRANAIRRSKPVSVSSGAEGVSSLEEETTTEATVEDFEDVSPEVFM-------- 270

Query: 4376 KVSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMFFIEA 4197
                Q  FS G L P+E KD +K LW+NE  LCS IS+I Q       N+  HSMFF+E+
Sbjct: 271  ----QKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG---HGNKAGHSMFFLES 323

Query: 4196 LVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMN---NSRVAPRWMELQQS 4026
            ++VPPIKFRPP+KGG SVMEHPQT LL++VLQ N+SLGN H N   +S++   WM+LQQS
Sbjct: 324  VLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQS 383

Query: 4025 VNVLFGNKKSTSQ-RDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLAVNE 3849
            +N+LF +K +    +++A  GICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPYLAVNE
Sbjct: 384  INILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNE 443

Query: 3848 IGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPL--SRKSR 3675
            IGIPPYFALRLTYPERVT WNV KLRNAIINGPE HPGAT  IDK    KL L  SRKSR
Sbjct: 444  IGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSR 503

Query: 3674 NSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 3495
             SISRKLPSSRGVVV  G   ++E EGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRV
Sbjct: 504  ISISRKLPSSRGVVVDQGCD-DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 562

Query: 3494 LKGEKTIRMHYANCS-TYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTK 3318
            LKGEKTIRMHYANCS TYNADFDGDEMNVHFPQDEISRAEA NIVNANNQY+ PTSG+  
Sbjct: 563  LKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPI 622

Query: 3317 RGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEI 3138
            R LIQDHI+SAVLLTK+DTFL +++++ LLY+SG+S +    S  K GQ + +++ + E+
Sbjct: 623  RALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEM 682

Query: 3137 QYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQSGEGK--- 2967
              +LPA+WKP PLWTGKQV+T++L+H+T+  G  PF V+K   I + +     G  K   
Sbjct: 683  LPVLPAVWKPEPLWTGKQVVTALLDHITQ--GSPPFFVEKDVKIPRGFLILDEGNSKKKE 740

Query: 2966 ----------------FFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLS 2835
                              I KN  V GVIDK+QFG YGL+HTVQELYGS+ AG+LLS +S
Sbjct: 741  HTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMS 800

Query: 2834 RLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFKNGD-IDEMT 2664
            RLFTVFLQ HGFTCGVDDLL+++ +D ER K  +   ++GEQVH  FL  K+G+ +D MT
Sbjct: 801  RLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMT 860

Query: 2663 LQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFL 2484
            LQ  IEK +  NGE+A   LD+ M+S+  + T   N K+     S  GLLKP  +NC  L
Sbjct: 861  LQLNIEKTISYNGEAALTSLDRKMTSQLNERTG--NSKVLKDLLSE-GLLKPSVKNCISL 917

Query: 2483 MTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYL 2304
            MT SGAKG   NFQQISS LGQQ+LEGKRVPRM+SGKTLPCFPPWD +SRAGGFI DR+L
Sbjct: 918  MTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFL 977

Query: 2303 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQ 2124
            TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LK+CYDHTVRDADGSV+Q
Sbjct: 978  TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQ 1037

Query: 2123 FCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRT 1944
            F YGEDGVDVHKT+F++KF+ LA NQ ++ E     + + Q    + ++ ELP AL ++ 
Sbjct: 1038 FQYGEDGVDVHKTAFITKFEALAANQDMLYE-----NSHHQLGKYNVFINELPSALREKG 1092

Query: 1943 RDFINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTLN 1764
                N LSK        ++               LA+PGEPVGV+AAQSIGEPSTQMTLN
Sbjct: 1093 EFIYNSLSKDKVPGLVLKED--FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLN 1150

Query: 1763 TFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVS 1584
            TFHHAG+G E+NVTLGIPRLQEILM AS++I+TP+MTCPL+ G + D A  LA KL K++
Sbjct: 1151 TFHHAGRG-EMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKIT 1209

Query: 1583 VADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDE 1404
            VAD++ESM V VVPFS  K + C++YKL++  Y  E   +   IS +D E TLE +F++E
Sbjct: 1210 VADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEE 1269

Query: 1403 LERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXX 1224
            LE  I   + +LSKI+GIK  +  ++S    E D+   S++++                 
Sbjct: 1270 LEGLIEREMVLLSKINGIKXFVPDSQSKGSSEGDEVSSSRQEE-------MDDDDEGNDL 1322

Query: 1223 XXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTE-- 1050
                      +K++ QA DEMDYEDD  E++++         E S G ESEVDQ D    
Sbjct: 1323 DVAEDLGSDXEKQKLQANDEMDYEDDS-EDDLN-------AKESSTGFESEVDQGDEAEI 1374

Query: 1049 TDNDVDDKVQIFDAEDESRARSVSGAKLNEK-HKSDHEGKKTKPKRAKKSWERTVFVEAE 873
            T+ND+ + V+   +E++     VS +   EK  ++  E KK K +  +K  +R++FVEA+
Sbjct: 1375 TNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAK 1434

Query: 872  GLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVV----------------- 744
               FEVH +FT+EP+ LLS+I Q+AA+ V I+R+G I QC  +                 
Sbjct: 1435 ENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKER 1494

Query: 743  ------EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQ 582
                  EK+K   LQT+GV+F+  WEMQD+LDV  I SNDIHA+ QTYGVEAARAT+I++
Sbjct: 1495 KNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIRE 1554

Query: 581  VNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEFIIE 405
            +  +F  +GISVNIRHL+LVAD+MT  G YRPMSR  G++ S SP S+M++ETA +FI++
Sbjct: 1555 IQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQ 1614

Query: 404  AAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            AA HGEVD LE+PS+RICLGLPVKMGTG FDLMQK+E
Sbjct: 1615 AALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1651


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 1644 bits (4257), Expect = 0.0
 Identities = 903/1660 (54%), Positives = 1136/1660 (68%), Gaps = 62/1660 (3%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P  GGLYDPA+G LD+ TLC+SCGQR F CPGHCGHIDLV PVYNP             C
Sbjct: 45   PVSGGLYDPAMGSLDETTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTC 104

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            F CHHFR    +VE C + LELI+ G++  AK +            E + +N    T  S
Sbjct: 105  FSCHHFRAGESMVENCKTLLELILDGEIAKAKEL------------EEEWMNSKSRTKSS 152

Query: 4727 R-MHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTS 4551
              M+ +E K+ +  +WTS+Q  EA+S++  F+K K+ +CK CG K+P IT PTFGW +  
Sbjct: 153  HSMYTYERKNGQPETWTSLQFSEAISVVTKFLKPKQSNCKYCGAKSPKITKPTFGWFHMK 212

Query: 4550 -MPNKSIRENVILGSKLKQPYLGENNVDSDDVESSG-AVYDEMSDSATKTYKKSKGSLLT 4377
             +     R N I  SK      G   V S + E++  A  ++  D + + +         
Sbjct: 213  GLAGVQKRANAIRRSKPVSVSSGAEGVSSLEEETTTEATVEDFEDVSPEVFM-------- 264

Query: 4376 KVSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMFFIEA 4197
                Q  FS G L P+E KD +K LW+NE  LCS IS+I Q       N+  HSMFF+E+
Sbjct: 265  ----QKNFSSGHLLPSEVKDILKRLWKNEALLCSFISDISQQG---HGNKAGHSMFFLES 317

Query: 4196 LVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMN---NSRVAPRWMELQQS 4026
            ++VPPIKFRPP+KGG SVMEHPQT LL++VLQ N+SLGN H N   +S++   WM+LQQS
Sbjct: 318  VLVPPIKFRPPAKGGDSVMEHPQTVLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQS 377

Query: 4025 VNVLFGNKKSTSQ-RDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLAVNE 3849
            +N+LF +K +    +++A  GICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPYLAVNE
Sbjct: 378  INILFDSKSAAGPGKNDASLGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNE 437

Query: 3848 IGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPL--SRKSR 3675
            IGIPPYFALRLTYPERVT WNV KLRNAIINGPE HPGAT  IDK    KL L  SRKSR
Sbjct: 438  IGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSR 497

Query: 3674 NSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRV 3495
             SISRKLPSSRGVVV  G   ++E EGK+V RHLQDGD+VLVNRQPTLHKPSIMAHVVRV
Sbjct: 498  ISISRKLPSSRGVVVDQGCD-DYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRV 556

Query: 3494 LKGEKTIRMHYANCS-TYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTK 3318
            LKGEKTIRMHYANCS TYNADFDGDEMNVHFPQDEISRAEA NIVNANNQY+ PTSG+  
Sbjct: 557  LKGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPI 616

Query: 3317 RGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEI 3138
            R LIQDHI+SAVLLTK+DTFL +++++ LLY+SG+S +    S  K GQ + +++ + E+
Sbjct: 617  RALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEM 676

Query: 3137 QYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYF-----GSQSGE 2973
              +LPA+WKP PLWTGKQV+T++L+H+T+  G  PF V+K   I + +F     G+ S +
Sbjct: 677  LPVLPAVWKPEPLWTGKQVVTALLDHITQ--GSPPFFVEKDVKIPRGFFKCRDMGNNSSK 734

Query: 2972 GK-----------------FFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLS 2844
             K                   I KN  V GVIDK+QFG YGL+HTVQELYGS+ AG+LLS
Sbjct: 735  KKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLS 794

Query: 2843 TLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFKNGD-ID 2673
             +SRLFTVFLQ HGFTCGVDDLL+++ +D ER K  +   ++GEQVH  FL  K+G+ +D
Sbjct: 795  VMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLD 854

Query: 2672 EMTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNC 2493
             MTLQ  IEK +  NGE+A   LD+ M+S+  + T   N K+     S  GLLKP  +NC
Sbjct: 855  PMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTG--NSKVLKDLLSE-GLLKPSVKNC 911

Query: 2492 FFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISD 2313
              LMT SGAKG   NFQQISS LGQQ+LEGKRVPRM+SGKTLPCFPPWD +SRAGGFI D
Sbjct: 912  ISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVD 971

Query: 2312 RYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGS 2133
            R+LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LK+CYDHTVRDADGS
Sbjct: 972  RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGS 1031

Query: 2132 VVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALE 1953
            V+QF YGEDGVDVHKT+F++KF+ LA NQ ++ E     + + Q    + ++ ELP AL 
Sbjct: 1032 VIQFQYGEDGVDVHKTAFITKFEALAANQDMLYE-----NSHHQLGKYNVFINELPSALR 1086

Query: 1952 KRTRDFINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQM 1773
            ++     N LSK        ++               LA+PGEPVGV+AAQSIGEPSTQM
Sbjct: 1087 EKGEFIYNSLSKDKVPGLVLKED--FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQM 1144

Query: 1772 TLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLM 1593
            TLNTFHH G+G E+NVTLGI RLQEILM AS++I+TP+MTCPL+ G + D A  LA KL 
Sbjct: 1145 TLNTFHHVGRG-EMNVTLGILRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLK 1203

Query: 1592 KVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMF 1413
            K++VAD++ESM V VVPFS  K + C++YKL++  Y  E   +   IS +D E TLE +F
Sbjct: 1204 KITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVF 1263

Query: 1412 VDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXX 1233
            ++ELE  I   + +LSKI+GIKN +  ++S    E D+   S++K+              
Sbjct: 1264 LEELEGLIEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSSSRQKE------NDDDDDEG 1317

Query: 1232 XXXXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDT 1053
                         +K++ QA DEMDYEDD  E++++         E S G ESEVDQ D 
Sbjct: 1318 NDLDVAEDLGSDMKKQKLQANDEMDYEDDS-EDDLN-------AKESSTGFESEVDQGDE 1369

Query: 1052 E--TDNDVDDKVQIFDAEDESRARSVSGAKLNEK-HKSDHEGKKTKPKRAKKSWERTVFV 882
               T+ND+ + V+   +E++     VS +   EK  ++  E KK K +  +K  +R++FV
Sbjct: 1370 AEITNNDMIEIVKDSASENQPEIVDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFV 1429

Query: 881  EAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVV-------------- 744
            EA+   FEVH +FT+EP+ LLS+I Q+AA+ V I+R+G I QC  +              
Sbjct: 1430 EAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNL 1489

Query: 743  ---------EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATL 591
                     EK+K   LQT+GV+F+  WEMQD+LDV  I SNDIHA+ QTYGVEAARAT+
Sbjct: 1490 KERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATI 1549

Query: 590  IKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEF 414
            I+++  +F  +GISVNIRHL+LVAD+MT  G YRPMSR  G++ S SP S+M++ETA +F
Sbjct: 1550 IREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKF 1609

Query: 413  IIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            I++AA HGEVD LE+PS+RICLGLPVKMGTG FDLMQK+E
Sbjct: 1610 IVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIE 1649


>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
            gi|561018822|gb|ESW17626.1| hypothetical protein
            PHAVU_007G255400g [Phaseolus vulgaris]
          Length = 1637

 Score = 1639 bits (4243), Expect = 0.0
 Identities = 900/1656 (54%), Positives = 1122/1656 (67%), Gaps = 58/1656 (3%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P  GGLYDPALGPLDD +LC+SCGQ S  CPGH GHI+LV PVYNP           + C
Sbjct: 45   PVSGGLYDPALGPLDDKSLCKSCGQGSKHCPGHFGHIELVSPVYNPLMFNILSSILQRTC 104

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            F CHHF    + VE  +SQ ELI+KGD++ AK++DS                ++D + HS
Sbjct: 105  FSCHHFHASRKEVEMRTSQFELIMKGDIIRAKSLDSI---------------ISDESNHS 149

Query: 4727 RMHGFETKHLEQ--HSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYT 4554
               G E++ +EQ   +W+S+Q  EAMS+L  F+ RK K C+ CG+ NP I+ PTFGW + 
Sbjct: 150  G-DGDESQGVEQLGENWSSLQFSEAMSVLRKFLLRKYKKCQNCGVVNPRISKPTFGWFHM 208

Query: 4553 S-MPNKSIRENVILGSKLKQPYLGENNVDSDDVESSGAVYDEMSD----SATKTYKKSKG 4389
            + + +   R N +           E+   +DD+   G    E  D       K  K+ KG
Sbjct: 209  NVLSDDEARANTMRAL--------ESETINDDMSLGGGETTEEEDITSTGTAKRDKRKKG 260

Query: 4388 SLLTKVSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMF 4209
             L +K++ Q K S G L P++ K  ++LLW+NE RLCS IS+IQ         +  HSMF
Sbjct: 261  KLSSKLAAQNKLS-GSLLPSQVKGILELLWENEARLCSYISDIQDQGF---GKKAGHSMF 316

Query: 4208 FIEALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNN---SRVAPRWME 4038
            F+E + VPPIKFRPP+KGG  VMEHPQT LL++VLQ N+SLG+AH+N    S+V  RWM+
Sbjct: 317  FLENIFVPPIKFRPPTKGGDDVMEHPQTVLLTKVLQGNISLGDAHINKLDPSKVLSRWMD 376

Query: 4037 LQQSVNVLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLA 3858
            LQQSVN+LF NK  TS +     GICQLLEKKEGIFRQK+MGKRVN+ACRSVISPDPYLA
Sbjct: 377  LQQSVNLLFDNK--TSGQGEVAAGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLA 434

Query: 3857 VNEIGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKS 3678
            VNEIGIPPYFALRL+YPERVTPWNVT LRNAI+NGP+ HPGAT   D+    KLP + K 
Sbjct: 435  VNEIGIPPYFALRLSYPERVTPWNVTMLRNAILNGPQSHPGATHYTDQQATVKLPPNGKL 494

Query: 3677 RNSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 3498
             + ISRKLPSSRGV++  GK  + E EGK+VYRHL+DGDVVLVNRQPTLHKPSIMAHVVR
Sbjct: 495  LSFISRKLPSSRGVILDHGKISDQEFEGKIVYRHLKDGDVVLVNRQPTLHKPSIMAHVVR 554

Query: 3497 VLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTK 3318
            VLKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNANNQY+ PTSGD  
Sbjct: 555  VLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPI 614

Query: 3317 RGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEI 3138
            R LIQDHIVSA LLTK+DTF+T+E +  LLY+SGVS    G   GK GQ V   N+E E+
Sbjct: 615  RALIQDHIVSAALLTKKDTFITYEVFIQLLYSSGVSMTGLGSFSGKHGQKVFMTNSEFEM 674

Query: 3137 QYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQSGEG---- 2970
                PAIWKP PLWTGKQVI+++L ++T  R   PFTV+K + I   +F +Q  +G    
Sbjct: 675  FLFPPAIWKPEPLWTGKQVISALLYYIT--RDSPPFTVEKNAKIPSNFFKTQVRDGKRHT 732

Query: 2969 --------------KFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSR 2832
                          K  I+KN  V GV+DK+QFG YG+IHTVQELYGS  AG LLS LSR
Sbjct: 733  RDKSRNKVEPDDEDKLLIYKNDLVRGVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALSR 792

Query: 2831 LFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFKNGD-IDEMTL 2661
            LFT FLQMHGFTCGVDDL+I +  D+ER         +G+ VH EF+G  N D ID +TL
Sbjct: 793  LFTTFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIGDIVHREFIGVMNSDIIDPITL 852

Query: 2660 QEEIEKVMRVNGESATARLD-KMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFL 2484
            Q  IEK +R NGE+A   LD KM S+ N++ ++ +   L        G+LKP  +NC  L
Sbjct: 853  QLNIEKKIRSNGEAALTYLDRKMTSNLNSRTSSGILKDLLSD-----GILKPSGKNCISL 907

Query: 2483 MTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYL 2304
            MT SGAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCF PWD S RAGGFI DR+L
Sbjct: 908  MTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFL 967

Query: 2303 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQ 2124
            TGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKVCYDHTVRDADGS++Q
Sbjct: 968  TGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQ 1027

Query: 2123 FCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRT 1944
            F YGEDGVDVH TSF++KF+ L+ N+++V      Q +      S  Y+ +LP+AL+++ 
Sbjct: 1028 FHYGEDGVDVHHTSFINKFEALSTNKELVYGNCCRQLD-----RSSPYINKLPDALKEKA 1082

Query: 1943 RDFINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTLN 1764
             +F     K+ +    S K               LA+PGE VGV+A+QS+GEP+TQMTLN
Sbjct: 1083 ENFFRDSLKQRN--LGSLKRAEFLKLMEHKYVSCLAQPGESVGVLASQSVGEPATQMTLN 1140

Query: 1763 TFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVS 1584
            TFH AG+ GE+NVTLGIPRLQEI+M A+ +I+TP MTCPLR  K+ ++A  LA KL K++
Sbjct: 1141 TFHLAGR-GEMNVTLGIPRLQEIVMAAARDIKTPFMTCPLRSNKSMEEAICLADKLKKIT 1199

Query: 1583 VADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDE 1404
            VAD+++SM+V VVP SV   Q C++YKL MKLY P+ YP++SDI+L+D E+TL I FV E
Sbjct: 1200 VADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLYKPKQYPKYSDITLEDWEDTLRISFVRE 1259

Query: 1403 LERAIRTHLTMLSKISGIKNILQRNES-GDGEETDDDLGSKRKQAGXXXXXXXXXXXXXX 1227
            LE AI  H+ +LSKISGIK      +S  +  E     GS+ +  G              
Sbjct: 1260 LEDAIENHMALLSKISGIKKFKTDPQSHSNSSEDAHGNGSESETKGKSNDDDDDDDVVED 1319

Query: 1226 XXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTET 1047
                      AQKR+ Q  DE+DYED   E     + SE IE +                
Sbjct: 1320 TEGYEDLGSDAQKRKRQGTDEVDYEDGPEEETHDGVLSEEIEND---------------- 1363

Query: 1046 DNDVDDKVQIFDAEDESRARSVSGAK-LNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEG 870
            +++VDD + + DA D      +S +K + EK     E KK++P   K  ++R VFV+A+G
Sbjct: 1364 EDNVDDNMTL-DASDSEGLDELSESKSIFEKDSLKREKKKSRPTTRK--YDRAVFVKAKG 1420

Query: 869  LDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVVE----------------- 741
            + F++H +FT EP ILL+EIA ++AK V I+ +G + +C  V                  
Sbjct: 1421 MHFQIHFKFTGEPDILLAEIALRSAKKVCIQNSGRVGECKAVTCKESGVMYYGEDSRKRD 1480

Query: 740  ------KDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQV 579
                  K+K   LQT+GV+F+ FWE+QDDLDV  I SN++HA+   YGVEAAR T+I++V
Sbjct: 1481 DIPASVKEKIPALQTSGVHFKTFWELQDDLDVRYIYSNNVHAMLNAYGVEAARETIIREV 1540

Query: 578  NAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAVSTSPLSKMSYETAAEFIIEA 402
              VF+ +GISVNIRHLTL+ADFMT  G YRPM+R+G +A  TSP  KM +ETA++FI+EA
Sbjct: 1541 QNVFKSYGISVNIRHLTLIADFMTHSGGYRPMNRNGSIADCTSPFIKMCFETASKFIVEA 1600

Query: 401  AYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            AYHG+VD LE+PS+RICLGLPVKMGTGC DL+QK+E
Sbjct: 1601 AYHGQVDNLETPSSRICLGLPVKMGTGCHDLIQKLE 1636


>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            tuberosum]
          Length = 1675

 Score = 1617 bits (4188), Expect = 0.0
 Identities = 876/1667 (52%), Positives = 1131/1667 (67%), Gaps = 69/1667 (4%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P P GLYDPA+GPLD  + C+ C Q +  C GHCGHI+LV PVYNP           + C
Sbjct: 42   PVPNGLYDPAMGPLDHYSQCKFCCQSN--CSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 99

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            F+C HFR     VEKC S+LELI KGDVVGAK +D+ SP  +    E++  +++ A    
Sbjct: 100  FYCFHFRASRAEVEKCVSELELIAKGDVVGAKMIDALSPDNSTDREESEGSHMSCAMDDL 159

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTSM 4548
             M     ++ ++ SW + Q  EAM+++D  +K K + C  C  KNP I  P+FG  +  +
Sbjct: 160  NMQDHR-EYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDI 218

Query: 4547 PNKSIRENVILGSK---LKQPYLGENNVDSDDVESSGAVYD-EMSDSATKT-------YK 4401
             NK IREN I   +   L      E N   + V ++  + + E S   T T        +
Sbjct: 219  SNKQIRENYINSGRRFNLHDTGGSEENPSPEVVNATEPLGEAETSLCVTSTDGVENSKAR 278

Query: 4400 KSKGSLLTKVSKQTK--FSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENR 4227
            K +G   + V +Q K  FS   L P++ +  I+ LW+NE  LC+   +IQ          
Sbjct: 279  KRQGGDQSDVVEQQKDSFSVAHL-PSQVRSIIEHLWENEAPLCTFFCDIQSQHHNTSGKV 337

Query: 4226 GNHSMFFIEALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNN---SRV 4056
               SMFF+++++VPPIKFRPP+KGG S+MEHP T LL +V+Q N++LGNAH+N    S++
Sbjct: 338  AGPSMFFLDSILVPPIKFRPPAKGGDSIMEHPHTVLLGKVVQANIALGNAHINRAGRSKI 397

Query: 4055 APRWMELQQSVNVLFGNKKSTSQ-RDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVI 3879
              R M+LQQSVNVLF +K ++   + + G+GICQ+LEKKEGIFRQK+MGKRVN+ACRSVI
Sbjct: 398  ISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVI 457

Query: 3878 SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTK 3699
            SPDPYL+VNEIGIPPYFALRLTYPER+TPWN  K+R+A+INGPE HPGA    D+    K
Sbjct: 458  SPDPYLSVNEIGIPPYFALRLTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVK 517

Query: 3698 LPLSRKSRNSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPS 3519
            LP ++K R +ISRKLPSSRG V Q G++ E+E EGKVVYRHLQDGDVVLVNRQPTLHKPS
Sbjct: 518  LPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPS 577

Query: 3518 IMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYII 3339
            IMAHVVRVLKGEKT+RMHYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNAN QYI+
Sbjct: 578  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIV 637

Query: 3338 PTSGDTKRGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSS 3159
            PT GDT RGLIQDHIV AV+LT ++TFLT  ++N LLY SGV AA    + G     VS 
Sbjct: 638  PTKGDTVRGLIQDHIVGAVILTMKNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSV 697

Query: 3158 INTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQS 2979
            ++ E  +Q +LPA+WKP PLWTGKQVIT++LNH+T  +G  P TVK    I   YF S+S
Sbjct: 698  VDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLT--KGCAPCTVKNKGKIPYPYFLSES 755

Query: 2978 ---------------GEGKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLS 2844
                            E +F I KN  V GVIDK+QFGK+GL+HT+QELYGS+ AG+LLS
Sbjct: 756  RLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLS 815

Query: 2843 TLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE-RRVGEQVHAEFLGFKNGDIDEM 2667
             LSRLFT+FLQ+HGFTCGVDDL+I+   D+ R +  E   VGE+ H +F+ FK G+I  +
Sbjct: 816  ALSRLFTIFLQLHGFTCGVDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPL 875

Query: 2666 TLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFF 2487
             LQ EIEK M  N E+ATA LD  M ++ A   ++ N +L        GLLKPFPRNC  
Sbjct: 876  ELQLEIEKAMSSNKEAATAALDMKMKNKLANKGSQFNKELLLK-----GLLKPFPRNCIA 930

Query: 2486 LMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRY 2307
            LMT +GAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCFPPWD +SRAGG++SDR+
Sbjct: 931  LMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGYVSDRF 990

Query: 2306 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVV 2127
            L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKVCYD+TVRDADGS++
Sbjct: 991  LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSII 1050

Query: 2126 QFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKR 1947
            QF YGEDGVDVH+TSFL  FK L  NQ+ + + L     + + +NS  Y+++LP+ LE++
Sbjct: 1051 QFYYGEDGVDVHRTSFLKNFKALKNNQETICQKL----RHGRKLNS--YIEKLPDGLEEK 1104

Query: 1946 TRDF-----------INKLSKKHHSFRHSRKPKG-IXXXXXXXXXXXLAEPGEPVGVIAA 1803
             + F           + KL KK    +  ++ +              LA+ GEPVGV+A 
Sbjct: 1105 VKHFWEKRTKKLEKKLGKLVKKEEMVKQLKEEEADFLELVRQKYFSSLADSGEPVGVLAG 1164

Query: 1802 QSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRD 1623
            QS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEILM ASE I+TP++TCP    ++++
Sbjct: 1165 QSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGWQSKN 1223

Query: 1622 DADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLK 1443
            DA  L AK+ K++VAD++ESMEV ++P S++ +Q   LYKL +KL   +       +S +
Sbjct: 1224 DAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDF------VSSE 1277

Query: 1442 DCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXX 1263
            DCE TL+ +F+ ELE AI +HL +LSKI+GI+N    +ES D +ET+++  S R +    
Sbjct: 1278 DCEYTLKFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRHE---- 1333

Query: 1262 XXXXXXXXXXXXXXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAG 1083
                                  AQKR+ Q  DEMDY+DD+ E+E     +  IE E S  
Sbjct: 1334 ---EEMLDDEDEDERTEDLSSDAQKRKQQTTDEMDYDDDENEDEAET--TAEIEDEKSEQ 1388

Query: 1082 SESEVDQVDTETDNDVDDKVQIFDAED-ESRARSVSGAKLNEKHKSDHEGKKTKPKRAKK 906
            ++ E+D  D E   +  ++ Q+   +  E    +   +K   K K+  +  K K +R+KK
Sbjct: 1389 TD-EIDNGDEEEIGNRGNEEQMSKLQSTEDDISNTKSSKSKTKTKTTVKQNKKKERRSKK 1447

Query: 905  SWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVVE----- 741
              +R VFV+ EGL FEVH RF +EP+ILL+++AQK AK VYIK +G I+QC +V+     
Sbjct: 1448 DSDRCVFVDVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTE 1507

Query: 740  --------------KDKEC---ELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGV 612
                          +D +     L+ AGV+F  FWEMQDDLDV +I +N+I A+  TYGV
Sbjct: 1508 NTVMWDEYQTKQQSQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGV 1567

Query: 611  EAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAVSTSPLSKMS 435
            EAARA+++++V  VF  +G+ ++ RHL+L+ADFMT  G Y+PMSRHG ++ S SP  KMS
Sbjct: 1568 EAARASILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMS 1627

Query: 434  YETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            +ETA++FI+EAA HG  D LE+PS+RICLGLPVKMGTGCFD+MQK++
Sbjct: 1628 FETASKFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLD 1674


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 1605 bits (4156), Expect = 0.0
 Identities = 869/1667 (52%), Positives = 1127/1667 (67%), Gaps = 69/1667 (4%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P P GLYDPA+GPLD  + C+ C Q +  C GHCGHI+LV PVYNP           + C
Sbjct: 42   PVPNGLYDPAMGPLDHYSQCKFCSQSN--CSGHCGHIELVSPVYNPLLFNMLHNLLQRTC 99

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            F+C HFR     VEKC S+LELI KGDVVGAK +D+ SP  +    E++  +++  T   
Sbjct: 100  FYCFHFRASRAEVEKCVSELELIAKGDVVGAKMIDALSPDNSTDREESEGSHMS-CTMDD 158

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTSM 4548
                   ++ ++ SW + Q  EAM+++D  +K K + C  C  KNP I  P+FG  +  +
Sbjct: 159  LNVRDHCEYNKRPSWDNFQFTEAMAVIDRILKTKTEKCSNCKAKNPKIRKPSFGRFHMDI 218

Query: 4547 PNKSIRENVILGSK---LKQPYLGENNVDSDDVESSGAVYD-EMSDSATKTY-------K 4401
             NK IREN I   +   L      E N   + V ++  + + E S   T T        +
Sbjct: 219  SNKQIRENYINSGRRFNLHDTGGSEENPSPEVVNATEPLGEAETSLCVTSTDGVENSKGR 278

Query: 4400 KSKGSLLTKVSKQTK--FSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENR 4227
            K +G   + V +Q K  FS   L P++ +  I+ LW+NE  LC+   +IQ          
Sbjct: 279  KRQGGDQSDVVEQQKDSFSVAHL-PSQVRSIIEHLWENEAPLCTFFCDIQSQHRNTSGKV 337

Query: 4226 GNHSMFFIEALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNN---SRV 4056
               SMFF+++++VPP+KFRPP+KGG S+MEHP T LL +V+Q N++LGNAH+N    S++
Sbjct: 338  AGPSMFFLDSILVPPVKFRPPAKGGDSIMEHPHTVLLGKVIQANIALGNAHINRAGRSKI 397

Query: 4055 APRWMELQQSVNVLFGNKKSTSQ-RDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVI 3879
              R M+LQQSVNVLF +K ++   + + G+GICQ+LEKKEGIFRQK+MGKRVN+ACRSVI
Sbjct: 398  ISRLMDLQQSVNVLFDSKTASGPGQKDVGSGICQMLEKKEGIFRQKMMGKRVNFACRSVI 457

Query: 3878 SPDPYLAVNEIGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTK 3699
            SPDPYL+VNEIGIPPYFA RLTYPER+TPWN  K+R+A+INGPE HPGA    D+    K
Sbjct: 458  SPDPYLSVNEIGIPPYFASRLTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVK 517

Query: 3698 LPLSRKSRNSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPS 3519
            LP ++K R +ISRKLPSSRG V Q G++ E+E EGKVVYRHLQDGDVVLVNRQPTLHKPS
Sbjct: 518  LPSNKKMRVAISRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPS 577

Query: 3518 IMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYII 3339
            IMAHVVRVLKGEKT+RMHYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNAN QYI+
Sbjct: 578  IMAHVVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIV 637

Query: 3338 PTSGDTKRGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSS 3159
            PT GDT RGLIQDHIV AV+LT ++TFL+  ++N LLY SGV AA    + G     VS 
Sbjct: 638  PTKGDTVRGLIQDHIVGAVILTMKNTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSI 697

Query: 3158 INTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQS 2979
            ++ E  +Q +LPA+WKP PLWTGKQVIT++LNH+T   G  P TVK    I   YF S+S
Sbjct: 698  VDFEGVVQTVLPAVWKPKPLWTGKQVITALLNHLT--NGCPPCTVKNKGKIPYAYFLSES 755

Query: 2978 ---------------GEGKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLS 2844
                            E +F I KN  V GVIDK+QFGK+GL+HT+QELYGS+ AG+LLS
Sbjct: 756  RLVEYQSREEQEDRTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLS 815

Query: 2843 TLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE-RRVGEQVHAEFLGFKNGDIDEM 2667
             LSRLFT+FLQ+HGFTCG+DDL+I+   D+ R +  E   VGE+ H +F+ FK G+I  +
Sbjct: 816  ALSRLFTIFLQLHGFTCGIDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPL 875

Query: 2666 TLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFF 2487
             LQ EIEK +  N E ATA LD  M ++ A   ++ N +L        GLLKPFPRNC  
Sbjct: 876  ELQLEIEKAISSNKEVATAALDMKMKNKLANKGSQFNKELLLK-----GLLKPFPRNCIA 930

Query: 2486 LMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRY 2307
            LMT +GAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCFP WD +SRAGG++SDR+
Sbjct: 931  LMTITGAKGSTVNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRF 990

Query: 2306 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVV 2127
            L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKVCYD+TVRDADGS++
Sbjct: 991  LSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSII 1050

Query: 2126 QFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKR 1947
            QF YGEDGVDVH+TSFL  FK L  NQ+ + + L    +    +NS  Y+++LP+ L ++
Sbjct: 1051 QFYYGEDGVDVHRTSFLKNFKALKNNQETICQKLRHGCK----LNS--YIEKLPDGLGEK 1104

Query: 1946 TRDF-----------INKLSKKHHSFRHSRKPKG-IXXXXXXXXXXXLAEPGEPVGVIAA 1803
             + F           +  L KK    +  ++ +              LA+ GEPVGV+A 
Sbjct: 1105 VKHFWESKTKKLEKKLGMLVKKEEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLAG 1164

Query: 1802 QSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRD 1623
            QS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQEILM ASE I+TP+MTCP    K+++
Sbjct: 1165 QSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKN 1223

Query: 1622 DADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLK 1443
            DA  L AK+ K++VAD++ESMEV ++P S++ +Q   LYKL +KL   +       +S +
Sbjct: 1224 DAQSLLAKVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDF------VSSE 1277

Query: 1442 DCEETLEIMFVDELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXX 1263
            DCE TL+ +F+ ELE AI +HL +LSKI+GI+N    +ES D +ET+++  S R++    
Sbjct: 1278 DCEYTLKFVFLRELEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRRE---- 1333

Query: 1262 XXXXXXXXXXXXXXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAG 1083
                                  AQKR+ Q  DEMDY+DD+ E E     +  IE E S  
Sbjct: 1334 -EEMLDDDDDDEDERTEDLSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQ 1392

Query: 1082 SESEVDQVDTETDNDVDDKVQIFDAEDESRARSVSGAKLNE-KHKSDHEGKKTKPKRAKK 906
            ++ E+D  D E + D  ++     ++ +S    +S  K ++ K K+  + KK K +R+KK
Sbjct: 1393 TD-EIDNGDEEENGDRGNEEH--TSKLQSTEEDISNTKTSKSKTKTTVKQKKKKERRSKK 1449

Query: 905  SWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVVE----- 741
              +R VFV+ EGL FEVH RF +EP+ILL+++AQK AK VY+K +G I+QC +V+     
Sbjct: 1450 DSDRCVFVDVEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTE 1509

Query: 740  --------------KDKEC---ELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGV 612
                          +D +     L+ AGV+F  FWEMQDDLDV +I +N+I A+  TYGV
Sbjct: 1510 NTVMWDENQTKQQRQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGV 1569

Query: 611  EAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAVSTSPLSKMS 435
            EAARA+++++V  VF  +G+ ++ RHL+L+ADFMT  G Y+PMSRHG ++ S SP  KMS
Sbjct: 1570 EAARASILREVKTVFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMS 1629

Query: 434  YETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            +ETA++FI+EAA HG  D LE+PS+RICLGLPVKMGTGCFD+MQ+++
Sbjct: 1630 FETASKFIVEAAAHGLTDNLETPSSRICLGLPVKMGTGCFDIMQELD 1676


>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1650

 Score = 1596 bits (4132), Expect = 0.0
 Identities = 877/1659 (52%), Positives = 1114/1659 (67%), Gaps = 61/1659 (3%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P  GGLYDPALGP  + + C+SCGQ S+ CPGH GHI+LV PVYNP           + C
Sbjct: 45   PVAGGLYDPALGPFHEKSPCQSCGQNSYHCPGHFGHIELVSPVYNPLMFSMLSNVLRRTC 104

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            F CHHF+     VE  ++QLELI+KG++  AKN+D+ +  E+      D  + ND+ C S
Sbjct: 105  FSCHHFQASRNEVELRANQLELIMKGNIAKAKNLDAINLDESA-----DLSDGNDSQCSS 159

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYT-S 4551
                 E       +WTS+Q  EAMS+L  F+K++ + C+ CG  NP IT PTFGW +  +
Sbjct: 160  DEQLGE-------NWTSLQFSEAMSVLRKFLKKEFRKCQNCGNINPKITKPTFGWFHVKA 212

Query: 4550 MPNKSIRENVILGSKLKQPYLGENNVDSDDVESSGAVYDEMSDSATKTYKKSKGSLLTKV 4371
            +     R NVI G          + +  DD+        ++ D  +     S      K+
Sbjct: 213  LSAAQARANVISGIDASLA----SEIIHDDISLGNGDTTDVEDITSGDTANSNAKRQNKL 268

Query: 4370 SKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMFFIEALV 4191
            ++  K S G L P++ +  ++LLW+NE RLC  IS+IQ         +  HSMFF++ + 
Sbjct: 269  ARHNKLS-GSLLPSQVQGILELLWENEARLCLYISDIQGQGF---GKKAGHSMFFLDNIY 324

Query: 4190 VPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNNSR---VAPRWMELQQSVN 4020
            VPPIKFRPP+KG   V EH QT LL++VL+ N+SLG AH+N S    V  RWM+LQ+SVN
Sbjct: 325  VPPIKFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDASVVLRRWMDLQRSVN 384

Query: 4019 VLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 3840
            +LF NK ++ Q+D   TGICQLLEKKEGIFRQK+MGKRVNYACRSVISPDPYLAVNEIGI
Sbjct: 385  LLFDNKTASGQKDLV-TGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGI 443

Query: 3839 PPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKSRNSISR 3660
            PPYFALRLTYPERVTPWNV +LRNAI+NGPE HPGATL  DK++  KLPL R+SR+  SR
Sbjct: 444  PPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRRSRSLTSR 503

Query: 3659 KLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 3480
            KL SSRGV++  GK  ++E EGKVVYRHL+DGDVVLVNRQPTLHKPSIMAHVVRVLKGEK
Sbjct: 504  KLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 563

Query: 3479 TIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTKRGLIQD 3300
            T+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNANNQY+ PTSGD  R LIQD
Sbjct: 564  TVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQD 623

Query: 3299 HIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEIQYLLPA 3120
            HIVSA LLTK+DTFL+ E++N LLY+SGVS    G   GK GQ +   N++ E+    PA
Sbjct: 624  HIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFPPA 683

Query: 3119 IWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQSGEG---------- 2970
            I+KP PLWTGKQVI+++L ++T  +G  PFTV+K + I   +F ++  EG          
Sbjct: 684  IFKPEPLWTGKQVISALLYYIT--KGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDTSIK 741

Query: 2969 -------KFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFLQ 2811
                   K  I++N  V GV+DK+QFG YG++HTVQE YGS+ AG+LLS LSRLFT FLQ
Sbjct: 742  KDEPDEDKLLIYRNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGILLSALSRLFTNFLQ 801

Query: 2810 MHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFKNGD-IDEMTLQEEIEKV 2640
            MHGFTCGVDDLL+ +  D ER    E    +G+ VH EF+G   GD ID +T+Q  +EK 
Sbjct: 802  MHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLNVEKK 861

Query: 2639 MRVNGESATARLD-KMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMTASGAK 2463
            +R NGE+A   LD KM+S+ N++ +  V   L        G+LKP  +N   LMT SGAK
Sbjct: 862  IRSNGEAAITYLDRKMISNLNSRTSTGVLKVLLSE-----GILKPSGKNWISLMTTSGAK 916

Query: 2462 GSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGLRPQE 2283
            GS VNFQQISS LGQQELEGKRVPRM+SGKTLPCF  WD S RAGGFI DR+LT LRPQE
Sbjct: 917  GSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQE 976

Query: 2282 YYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDG 2103
            YYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKVCYDHTVRDADGS++QF YGEDG
Sbjct: 977  YYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDG 1036

Query: 2102 VDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRDFI--- 1932
            VDVH+TSF++KF+ L+ N+++V      + +      S  Y+ +LP+AL+ +   FI   
Sbjct: 1037 VDVHQTSFINKFEALSTNKELVYSNCCRELD-----KSSPYINKLPDALKGKAEKFILDS 1091

Query: 1931 -----NKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTL 1767
                 N  S  H +F H  + K +           LA+PGEPVGV+A+QS+GEP+TQMTL
Sbjct: 1092 SSKQRNSGSMTHTNFLHLMEHKYV---------SSLAQPGEPVGVLASQSVGEPATQMTL 1142

Query: 1766 NTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKV 1587
            NTFH AG+ GE+NVTLGIPRLQEIL  AS +I+TP MTCPLR  K+ +DA RLA K+ K+
Sbjct: 1143 NTFHLAGR-GEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDAIRLADKMKKI 1201

Query: 1586 SVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVD 1407
            +VAD++ESM+V VVP +V   + C++YKL MKL+ P+ YP+++D++LKD EETL + FV 
Sbjct: 1202 TVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVR 1261

Query: 1406 ELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXX 1227
             LE AI  ++ +L+KISGI N     +       +DD  +     G              
Sbjct: 1262 GLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSN-----GKTNDDDDDDGDADD 1316

Query: 1226 XXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIG--SENIEG-EPSAGSESEVDQVD 1056
                      AQK + Q  D++DY DD  E E    G  SE++EG E +  +E   D  D
Sbjct: 1317 TEGAEDLGLDAQKSKRQVVDDVDY-DDGPEEETLEDGELSEDLEGVEDAKDNEYVKDDGD 1375

Query: 1055 TETDNDVDDKVQIFDAE-DESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVE 879
             + D D        D E +E+  +   GA  ++      E  K++P    K ++R V+V+
Sbjct: 1376 GKDDEDGKGDEDGSDIEVNENDKKVTLGANYSQ---GPEENSKSQP--VSKKFDRRVYVK 1430

Query: 878  AEGLDFEVHLRFTDEPYILLSEIAQKAAKNVYIKRAGNINQCSVVE-------------- 741
             E   FE+H +FT EP+ILL++IAQK A+ V I+  G + QC  +               
Sbjct: 1431 FEKRHFEIHFKFTGEPHILLAQIAQKTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDS 1490

Query: 740  ---------KDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLI 588
                     K+K   LQT+G++F++FWEMQDDL+V  + SN++HAI  TYGVEAA+ T+I
Sbjct: 1491 KREEIPSSVKEKIPALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGVEAAKETII 1550

Query: 587  KQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAVSTSPLSKMSYETAAEFI 411
            ++V  VF+ +GISVNIRHL L+ADFMT  G YRPMSR G +A STSP  K+ +ETA+ FI
Sbjct: 1551 REVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKICFETASNFI 1610

Query: 410  IEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            +EAA HG+VD L+SPSARICLGLPVKMGTGC +L+QK+E
Sbjct: 1611 VEAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQKLE 1649


>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
            arietinum]
          Length = 1660

 Score = 1585 bits (4105), Expect = 0.0
 Identities = 877/1668 (52%), Positives = 1114/1668 (66%), Gaps = 70/1668 (4%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P  GGLYDPALGP  + + C+SCGQ S+ CPGH GHI+LV P YNP           + C
Sbjct: 45   PVAGGLYDPALGPFHEKSPCQSCGQNSYHCPGHFGHIELVSPAYNPLMFSMLSNVLRRTC 104

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            F CHHF+   + VE  ++QLELI+KG++  AKN+D     E  L    D  + +D+ C S
Sbjct: 105  FSCHHFQASRKEVELRANQLELIMKGNIAKAKNLD-----EINLDESADLCDGDDSQCSS 159

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYT-S 4551
                 E       +WTS+Q  EAMS+L  F+K++ + C+ CG  NP IT PTFGW +  +
Sbjct: 160  AEQLGE-------NWTSLQFSEAMSVLRKFLKKEYRKCQNCGYINPKITIPTFGWFHVKA 212

Query: 4550 MPNKSIRENVILG------SKLKQPYLGENNVDSDDVESSGAVYDEMSDSATKTYKKSKG 4389
            +     R NVI G      S++    +   N D+ DVE   +   ++++S  K + K K 
Sbjct: 213  LSAAQARANVISGNDVSLASEIIHDDISLGNGDTTDVEDITS--GDIANSNAKRHNKEK- 269

Query: 4388 SLLTKVSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMF 4209
                ++S  T    G L P++ +  ++LLW+N+ RLC  IS+IQ   +     +  HSMF
Sbjct: 270  ----QISSHTL--AGSLLPSQVQRILELLWENDARLCLYISDIQGLGI---GKKAGHSMF 320

Query: 4208 FIEALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNNSR---VAPRWME 4038
            F+E + VPPIKFRPP+KG   V EH QT LL++VL+ N+SLG AH+N S    V  RWM+
Sbjct: 321  FLENIYVPPIKFRPPTKGDDKVSEHAQTVLLTRVLESNISLGQAHLNKSDASVVLRRWMD 380

Query: 4037 LQQSVNVLFGNKKST--SQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPY 3864
            LQ+SVN+LF NK ++  SQ+D   TGICQLLEKKEGIFRQK+MGKRVNYACRSVISPDPY
Sbjct: 381  LQRSVNLLFDNKTASGESQKDLV-TGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPY 439

Query: 3863 LAVNEIGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSR 3684
            LAVNEIGIPPYFALRLTYPERVTPWNV +LRNAI+NGPE HPGATL  DK++  KLPL R
Sbjct: 440  LAVNEIGIPPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDR 499

Query: 3683 KSRNSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHV 3504
            +SR+  SR+L SSRGV++  GK  ++E EGKVVYRHL+DGDVVLVNRQPTLHKPSIMAHV
Sbjct: 500  RSRSLTSRRLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHV 559

Query: 3503 VRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGD 3324
            VRVLKGEKT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNANNQY+ PTSGD
Sbjct: 560  VRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGD 619

Query: 3323 TKRGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTED 3144
              R LIQDHIVSA LLTK+DTFL+ E++N LLY+SGVS    G   GK GQ +   N++ 
Sbjct: 620  PIRALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDS 679

Query: 3143 EIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQSGEGK- 2967
            E+    PAI+KP PLWTGKQVI+++L ++T+  G  PFTV+K + I   +F ++  EGK 
Sbjct: 680  EMFLFPPAIFKPEPLWTGKQVISALLYYITK--GSPPFTVEKNAKIPSSFFKTRMREGKK 737

Query: 2966 ----------------FFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLS 2835
                              I+KN  V GV+DK+QFG YG++HTVQE YGS+ AG LLS LS
Sbjct: 738  RTKDTSIKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSALS 797

Query: 2834 RLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFKNGD-IDEMT 2664
            RLFT FLQMHGFTCGVDDLL+ +  D ER    E    +G+ VH EF+G   GD ID +T
Sbjct: 798  RLFTNFLQMHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPIT 857

Query: 2663 LQEEIEKVMRVNGESATARLD-KMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFF 2487
            +Q  +EK +R NGE+A   LD KM+S+ N++ ++ V  +L        G+LKP  +N   
Sbjct: 858  MQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSE-----GILKPSGKNWIS 912

Query: 2486 LMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRY 2307
            LMT SGAKGS VNFQQISS LGQQELEGKRVPRM+SGKTLPCF  WD S RAGGFI DR+
Sbjct: 913  LMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRF 972

Query: 2306 LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVV 2127
            LT LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LECLKVCYDHTVRDADGS++
Sbjct: 973  LTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSII 1032

Query: 2126 QFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKR 1947
            QF YGEDGVDVH+TSF++KF+ L+ N+++V      + +      S  Y+ +LP+AL+ +
Sbjct: 1033 QFHYGEDGVDVHQTSFINKFEALSTNKELVYSNCCRELDE-----SSPYINKLPDALKGK 1087

Query: 1946 TRDFINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTL 1767
               FI   S K  +   S                 LA+PGEPVGV+A+QS+GEP+TQMTL
Sbjct: 1088 AEKFIRDSSSKQRN-SGSMTHTNFLQLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTL 1146

Query: 1766 NTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKV 1587
            NTFH AG+G E+NVTLGIPRLQEIL  AS +I+TP MTCPLR  K+ +DA RLA K+ K+
Sbjct: 1147 NTFHLAGRG-EMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDAIRLADKMKKI 1205

Query: 1586 SVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVD 1407
            +VAD++ESM+V VVP +V   + C++YKL MKL+ P+ YP+++D++LKD EETL + FV 
Sbjct: 1206 TVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDWEETLRVSFVR 1265

Query: 1406 ELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXX 1227
             LE AI  ++ +L+KISGI N     +       +DD  + +                  
Sbjct: 1266 GLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSNGKTN---DDDDDDDDGDADD 1322

Query: 1226 XXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTE- 1050
                      AQK + Q  D++DY+D   E  +        +GE S   E   D  D E 
Sbjct: 1323 TEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLE-------DGELSEDLEGVEDAKDNEH 1375

Query: 1049 TDNDVDDKVQIFDAEDESRARSVSGAKLNEKHK--------SDHEGKKTKPKRAKKSWER 894
              +D D K    D ED       S  ++NE  K        S    + +K +   K ++R
Sbjct: 1376 VKDDGDGK----DDEDGKGDEDGSDIEVNENDKKVTLGVNYSQGPEENSKSQPVSKKFDR 1431

Query: 893  TVFVEAEGLDFEVHLRFTDEPYILLSE----IAQKAAKNVYIKRAGNINQCSVVE----- 741
             V+V+ E   FE+H +FTDEP+ILL++    IAQK A+ V I+  G + QC  +      
Sbjct: 1432 RVYVKFEKRHFEIHFKFTDEPHILLAQLLSTIAQKTAEKVCIQNFGKVGQCKAITCKESG 1491

Query: 740  ------------------KDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYG 615
                              K+K   LQT+G++F++FWEMQDDL+V  + SN++HAI  TYG
Sbjct: 1492 VIYYGEDDSKREEIPSSVKEKIPALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYG 1551

Query: 614  VEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAVSTSPLSKM 438
            VEAA+ T+I++V  VF+ +GISVNIRHL L+ADFMT  G YRPMSR G +A STSP  K+
Sbjct: 1552 VEAAKETIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKI 1611

Query: 437  SYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
             +ETA+ FI+EAA HG+VD L+SPSARICLGLPVKMGTGC +L+QK+E
Sbjct: 1612 CFETASNFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQKLE 1659


>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1628

 Score = 1574 bits (4076), Expect = 0.0
 Identities = 866/1646 (52%), Positives = 1108/1646 (67%), Gaps = 48/1646 (2%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPL-DDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKY 4911
            P  GGLYDPA GPL D+ + C SCG     C GH GHI+LV PVYNP           + 
Sbjct: 45   PVRGGLYDPAFGPLLDNRSNCESCGMSKDHCSGHFGHIELVSPVYNPLMFLFLGKILNRT 104

Query: 4910 CFFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCH 4731
            CF CH+FR   + V++ +SQLELI+KG++  AK++      E  L+   DSV+ +D    
Sbjct: 105  CFSCHYFRASRDEVKRRASQLELILKGNISKAKSL-----GEIKLNETIDSVDDDDDD-- 157

Query: 4730 SRMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFG-WIYT 4554
            S+  G E       SWTS+Q  EAMS++  F+ +  K C  CG  +P IT PTFG +   
Sbjct: 158  SQWSGAEQLG---ESWTSLQFSEAMSVIYEFLAKDYKKCLNCGCISPKITKPTFGRFNVK 214

Query: 4553 SMPNKSIRENVILGSKLKQPYLGENNVDSDDVESSGAVYDEMSDSATKTYKKSKGSLLTK 4374
            ++ +   R NVI  +K       +   D +D+ S GA     ++            L  K
Sbjct: 215  ALSSVQARANVISSAKA-----ADVQADEEDITSGGAGNSNGNNQI----------LSIK 259

Query: 4373 VSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMFFIEAL 4194
            + +Q+  S G L P++ ++ IKLLW+NE+RLCS IS+IQ         +  HSMFF+E +
Sbjct: 260  LVEQSSLS-GSLLPSQVQEMIKLLWKNESRLCSHISDIQDQGF---GKKAGHSMFFLENI 315

Query: 4193 VVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNNSR---VAPRWMELQQSV 4023
             VPPIKFRPP K G +V EHPQT LLS+VL+ N+SL +AH   S    +  RW +LQ SV
Sbjct: 316  FVPPIKFRPPLKAGDNVAEHPQTVLLSKVLESNISLADAHRTKSDAYYILRRWQDLQGSV 375

Query: 4022 NVLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLAVNEIG 3843
            N+LF NK S   + +A +GICQLL+KKEGIFRQK+MGKRVNYACRSVISPDPYLAVNEIG
Sbjct: 376  NLLFDNKTSLRSQKDA-SGICQLLDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIG 434

Query: 3842 IPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKSRNSIS 3663
            IPPYFALRLTYPERVTPWN  KL +AI+NGP+ HPGA L  DK++  +L   +  R+S S
Sbjct: 435  IPPYFALRLTYPERVTPWNSAKLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRSSTS 494

Query: 3662 RKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 3483
            R+L SSRGV++  GK  EHE EGKVVYRHL+DGDVVLVNRQPTLHKPSIMAHVVRVLKGE
Sbjct: 495  RRLQSSRGVIMHHGKIHEHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 554

Query: 3482 KTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTKRGLIQ 3303
            KT+RMHYANCSTYNADFDGDE+NVHFPQDEISRAEA NIVNANNQY+ PTSGD  R LIQ
Sbjct: 555  KTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQ 614

Query: 3302 DHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEIQYLLP 3123
            DHIVSA LLTK+DTFL+ +++N LLY+SGVS    G    K GQ V   N+E E+    P
Sbjct: 615  DHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTGMGSFSCKPGQKVLMSNSESEMFLFPP 674

Query: 3122 AIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQSG----------- 2976
            AI+KP PLWTGKQVI+++L ++T  +G  PFTV+K + I   +F +Q+G           
Sbjct: 675  AIFKPEPLWTGKQVISALLCYIT--KGRPPFTVEKNAKIPSSFFKTQTGEIKKHTKDTSR 732

Query: 2975 -----EGKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFLQ 2811
                 E K  I++N  V GV+DK+QFG YG++HTVQE YGS+ AG+LLS LSRLFT FLQ
Sbjct: 733  KKDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSALSRLFTNFLQ 792

Query: 2810 MHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLG-FKNGDIDEMTLQEEIEKV 2640
            MHGFTCGVDDLLI    D ER    E    +G+ VH EF+G  ++ +ID +T+Q  +EK 
Sbjct: 793  MHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREFIGVMESENIDPITMQLNVEKK 852

Query: 2639 MRVNGESATARLD-KMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMTASGAK 2463
            +R NGE+A   LD KM+S+ N++ ++ V  +L        G LKP  +N   LMT SGAK
Sbjct: 853  IRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSK-----GSLKPSGKNWISLMTTSGAK 907

Query: 2462 GSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGLRPQE 2283
            GS VNFQQISS LGQQELEGKRVPRM+SGKTLPCFP WD S RAGGFI DR+LT LRPQE
Sbjct: 908  GSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPRAGGFIIDRFLTALRPQE 967

Query: 2282 YYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDG 2103
            YYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKVCYDHTVRD+DGS++QF YGEDG
Sbjct: 968  YYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDHTVRDSDGSIIQFHYGEDG 1027

Query: 2102 VDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRDFINKL 1923
            VDVH+TSF++KF+ L++N++++      Q +      S  Y+ +LP+AL+ +  +FI   
Sbjct: 1028 VDVHQTSFINKFEALSINKELIYSNCCRQLD-----RSSPYINKLPDALKGKAENFIRDF 1082

Query: 1922 SKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTLNTFHHAGQ 1743
            S K  +   S K               LA+PGEPVGV+A+QS+GEP+TQMTLNTFH AG+
Sbjct: 1083 SSKQRN-SSSMKEADFLQVMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGR 1141

Query: 1742 GGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVADLVES 1563
             GE+NVTLGIPRL EI++ AS+NI+TP MTCPLR  K+ +DA RLA K+ K++VAD++ES
Sbjct: 1142 -GEMNVTLGIPRLHEIVVAASKNIKTPFMTCPLRPNKSMEDAIRLADKMKKITVADIIES 1200

Query: 1562 MEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELERAIRT 1383
            M+V VVP +V + + C++YKL MKL+ P+ YP+++D++L+D EETL + FV ELE AI  
Sbjct: 1201 MKVSVVPVAVKEGRICSIYKLTMKLHKPKHYPKYTDVTLEDWEETLRVGFVRELEDAIEN 1260

Query: 1382 HLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXX 1203
            H+++L++ISGIK+   ++ S +G + D    S   Q G                      
Sbjct: 1261 HISLLARISGIKDFQGKSNSSNGLDNDHSNESASNQNG----QTDDDDEVGDTEDAEEDG 1316

Query: 1202 XXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTETDNDVDDKV 1023
              AQK + +A DE+DY+D   E        E  +GE S   E   D  D E DN V+   
Sbjct: 1317 FDAQKSKQRATDEVDYDDGPEE--------ETHDGEKSEDVEVSEDGKDDEDDNGVEVNG 1368

Query: 1022 QIFDAEDESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRF 843
               D E     ++V+   L E  KS    KK K + A K ++R V+V+A G+ FE+H +F
Sbjct: 1369 DDSDIEVNDSDKNVT---LEETSKS----KKRKFEPASKKYDRRVYVKAGGMRFEIHFKF 1421

Query: 842  TDEPYILLSEIAQKAAKNVYIKRAGNINQCSVVE-----------------------KDK 732
              EP+ILL++IAQ+ A+ V I+  G + QC  +                        K+K
Sbjct: 1422 IGEPHILLAQIAQRTAEKVCIQNFGKVGQCKAITCKESGVIYYGEDDSKRDDIPSSVKEK 1481

Query: 731  ECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGI 552
               LQT+G++F+ FWEM+DDL V  + SND+HAI + YGVEAA+  +I++V  VF+ +GI
Sbjct: 1482 IPALQTSGIHFKTFWEMEDDLKVRYVYSNDVHAILKAYGVEAAKEVIIREVQNVFKSYGI 1541

Query: 551  SVNIRHLTLVADFMTQHGRYRPMSRHGMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLE 372
            SVNIRHL L+ADFMT  G YRP++R G+A STSP  K+SYETA+ FI+EAA HG+VD LE
Sbjct: 1542 SVNIRHLMLIADFMTHSGSYRPLTRSGIADSTSPFVKISYETASNFIVEAARHGQVDTLE 1601

Query: 371  SPSARICLGLPVKMGTGCFDLMQKVE 294
            +PS+RICLGLPVKMGTGC DL+QK+E
Sbjct: 1602 TPSSRICLGLPVKMGTGCIDLIQKLE 1627


>gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus guttatus]
          Length = 1719

 Score = 1561 bits (4041), Expect = 0.0
 Identities = 868/1710 (50%), Positives = 1117/1710 (65%), Gaps = 112/1710 (6%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGLYDPA+G LD+ ++C SCGQR++LC GHCGHI+LV   YNP           K C
Sbjct: 44   PCPGGLYDPAMGSLDERSICESCGQRAYLCNGHCGHIELVSVAYNPLLFNTLSNILNKTC 103

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEA-----LLSRENDSVNVND 4743
             +C  F    E  E   SQLELI KGD+ GAK +   S  +       +S ++D+    D
Sbjct: 104  LYCLQFISSAEETENFVSQLELIRKGDLAGAKKLALGSSFKGKKKMVFVSTDDDTDERED 163

Query: 4742 AT----CHSRMHGFETKHL---EQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSI 4584
            +      HS +      H    EQ SW+S Q  EA+S+++ +++RK K C  C ++ P I
Sbjct: 164  SQGSHMSHSAVLSDGENHFKDDEQASWSSAQLAEAISVMNEYLRRKGKKCMNCEMRCPKI 223

Query: 4583 TCPTFGWIYT--SMPNKSIRENVILGSKLKQPYL--GENNVDSDDVESSGAVYDEMSDSA 4416
            + PTFGW     +   K+IRENVI   KL +     GE+N  S+ V +     ++ S++ 
Sbjct: 224  SKPTFGWFQVGGATSAKAIRENVIRSHKLDESDSDGGEDNFSSEVVNAGDHSMNDDSETV 283

Query: 4415 TK-----TYKKSKGSLLTKVSKQTKFSPG----------PLWPTETKDRIKLLWQNENRL 4281
                   T   +K S    V++  K +PG          PL P++ +D +KLLW+ E   
Sbjct: 284  ESNSFIATSNSTKKSKKKGVNRAKKLNPGSGDPNFYLSGPLLPSQVRDILKLLWEKEASF 343

Query: 4280 CSLISNIQQDELCMP-ENRGNHSMFFIEALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVL 4104
            CS IS+IQ+ + C P  N+  +SMFF+E ++VPPI+FRPP+KGG SVMEHPQT LL +VL
Sbjct: 344  CSYISDIQRQK-CKPFGNKTGYSMFFLETVLVPPIRFRPPAKGGDSVMEHPQTVLLGKVL 402

Query: 4103 QCNLSLGNAHMN--NSRVAPRWMELQQSVNVLFGNKKSTS--QRDNAGTGICQLLEKKEG 3936
            Q N++LGNAH+N   S++  RWMELQQS+NV F +K +TS  Q+D+   GICQ LEKKEG
Sbjct: 403  QSNIALGNAHVNAEKSKIISRWMELQQSINVYFDSKTATSLAQKDSIA-GICQFLEKKEG 461

Query: 3935 IFRQKLMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVTKLRNAIIN 3756
            IFRQK+MGKRVN+ACRSVISPDPYLAVNEIGIPPYFAL+LTYPERVTPWN  KLR A++N
Sbjct: 462  IFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALKLTYPERVTPWNAAKLRGAVVN 521

Query: 3755 GPEVHPGATLCIDKSTKTKLPLSRKSRNSISRKLPSSRGVVVQPGKSLEHELEGKVVYRH 3576
            GP++HPGAT  +D  T  KLP S+K R +ISRKLPSSRGVV Q GK  + E EGK V+RH
Sbjct: 522  GPDIHPGATTYVDSVTIVKLPPSQKMRVAISRKLPSSRGVVTQSGKFDDLEFEGKTVHRH 581

Query: 3575 LQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQD 3396
            LQDGD+VLVNRQPTLHKPSIMAHVVRVL GE+T+RMHYANCS+YNADFDGDE+NVHFPQD
Sbjct: 582  LQDGDIVLVNRQPTLHKPSIMAHVVRVLHGERTLRMHYANCSSYNADFDGDEINVHFPQD 641

Query: 3395 EISRAEALNIVNANNQYIIPTSGDTKRGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSG 3216
            EISRAEA NIVNAN QYI+PT GDT RGLIQDHIV AVLLT ++TF+   ++N LLY SG
Sbjct: 642  EISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVLLTMKNTFVNRSEFNQLLYGSG 701

Query: 3215 VSAAARGGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLR 3036
            V A+  G       + V+ I+TE  ++ +LPAIWKP PLWTGKQVIT++LNH+TR  G  
Sbjct: 702  VFASGPGSLPKNNSRKVTLIDTEGVVESVLPAIWKPEPLWTGKQVITALLNHITR--GCA 759

Query: 3035 PFTVKKPSTIRKEYF-----------GSQSGEGKFFIHKNYFVHGVIDKSQFGKYGLIHT 2889
            PFTV+    I K YF             Q+ E    + KN  V GVIDK+QFGK+GL+HT
Sbjct: 760  PFTVENQGKIPKNYFFGNSYTRGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHT 819

Query: 2888 VQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFERR-VGEQV 2712
            VQELYG+ +AG+ LS LSR+FT+FLQ+HGFTCGVDDL+I+   D +R +  E   VGE V
Sbjct: 820  VQELYGASSAGIFLSALSRVFTLFLQIHGFTCGVDDLIILPDYDDQRKEKLEGEDVGEVV 879

Query: 2711 HAEFLGFKNGDIDEMTLQEEIEKVMRVNGESATARLD-KMMSSRNAKLTNEVNDKLFPSN 2535
            H +F+ FK G I    LQ EIEKV+  + ESATA LD KM +  N+KLT E +  L   +
Sbjct: 880  HCDFVKFKPGQIGPDELQLEIEKVICTDRESATASLDMKMKNKLNSKLTREGSQIL--KH 937

Query: 2534 SSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFP 2355
                GLLKPFP+NC  +MT +GAKGS VNFQQIS+ LGQQELEGKRVPRM+SGKTLP FP
Sbjct: 938  LLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPSFP 997

Query: 2354 PWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECL 2175
            PWD +SRAGGFI+DR+LTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVK+LE L
Sbjct: 998  PWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKNLESL 1057

Query: 2174 KVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFI 1995
            KVCYD+TVRDADGS+VQF YGEDG+DVH+TSFL+ FK L  N++ + +    + E     
Sbjct: 1058 KVCYDYTVRDADGSIVQFYYGEDGIDVHRTSFLNNFKALQDNRETICQKFQHKRE----- 1112

Query: 1994 NSDGYMKELPEALEKRTRDFINKLSKKH------------HSFRHSRKPKGIXXXXXXXX 1851
              + Y+K+LPE LE+  + FI +   K             HS R +RK + +        
Sbjct: 1113 -FNSYIKKLPEGLEEEAKRFIQETQNKSLAKQSTSAGEGPHSSRKARKKEKLLKKEKAAA 1171

Query: 1850 XXXL---------------AEPGEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLG 1716
                               A+ GEPVGVIAAQS+GEPSTQMTLNTFH AG+G E+NVTLG
Sbjct: 1172 AYEQDAFLELVKQKYLSSLAQAGEPVGVIAAQSVGEPSTQMTLNTFHLAGRG-EMNVTLG 1230

Query: 1715 IPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFS 1536
            IPRLQEILM ASE I+TP++TCP  + +++ +   L + + KVSVADL+E+MEV     S
Sbjct: 1231 IPRLQEILMSASEVIKTPLLTCPFSQWRSKREVVSLVSHVKKVSVADLIENMEV---QLS 1287

Query: 1535 VHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKIS 1356
            V+   A  +YKLKM L   E       +SL++  ETL+  F+ ELE AI  H+  LS++S
Sbjct: 1288 VNHKTAARVYKLKMTLKDTEF------VSLENMHETLKTTFLGELEDAIENHVLYLSRLS 1341

Query: 1355 GIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXAQKRRWQ 1176
            GIKN     +     E D+D        G                         QKR+ Q
Sbjct: 1342 GIKNFASNPKPKSSNEADED----ESGLGTENAGVNDDDDDDDDDKGDDLGSDVQKRKQQ 1397

Query: 1175 ARDEMDYED---------DDIENEISMIGSENIEGEPSAGSESEVDQVDTETDNDVDDKV 1023
            A D+MDYED         DD + E      EN+E E   G + E +  D   D D    V
Sbjct: 1398 ATDDMDYEDGSDGGAAEDDDSDLEKGKSDVENLE-EDETGKDEESEHTD---DKDEASNV 1453

Query: 1022 QIFDAEDESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRF 843
            Q    EDE+ +     +  + K K+  +  K+  +   K   R  ++  +G  FEVH  F
Sbjct: 1454 Q---NEDEAISEGTKSSVGSSKGKTSFD--KSSVELKGKKIRRAFYMVVKGTKFEVHFEF 1508

Query: 842  TDEPYILLSEIAQKAAKNVYIKRAGNINQCSVVEKDKECE-------------------- 723
             +EP++L++++AQK +K VYI+++G ++QC +V  D + +                    
Sbjct: 1509 HEEPHMLIAQLAQKTSKKVYIRKSGKVSQCKMVSYDPDEKTVIWDNSKKPKRGESKSEEE 1568

Query: 722  ------LQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQVNAVFED 561
                  ++ +GV+F++FWEM DDLD++++ SN+IHA+  TYGVEAARAT+I++V  VF+ 
Sbjct: 1569 DTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNIHAMLTTYGVEAARATIIREVKHVFDI 1628

Query: 560  HGISVNIRHLTLVADFMTQHGRYRPMSRHG-MAVSTSPLSKMSYETAAEFIIEAAYHGEV 384
            +G+ ++ RHL+L+AD MT  G Y PMSRHG ++ S SP  KMS+ETA++FI+EAA HG  
Sbjct: 1629 YGVKIDYRHLSLIADHMTHTGSYLPMSRHGSISESLSPFLKMSFETASKFIVEAASHGLT 1688

Query: 383  DYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            D L++PS+RICLGLPVKMGTG FD+MQ+++
Sbjct: 1689 DKLDTPSSRICLGLPVKMGTGSFDVMQQLD 1718


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score = 1548 bits (4009), Expect = 0.0
 Identities = 842/1654 (50%), Positives = 1094/1654 (66%), Gaps = 56/1654 (3%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGLYDP +GPL+D   C+SCGQ    CPGHCGHI+LV P+Y+P           + C
Sbjct: 47   PVPGGLYDPVMGPLNDKEACKSCGQLRLGCPGHCGHIELVYPIYHPLLFSLLYNFLQRTC 106

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            FFCHHF  +   V+KC SQL+LI+KGD+V AK ++  S S +  S E+  V+      + 
Sbjct: 107  FFCHHFMAKPNDVKKCVSQLKLIMKGDIVSAKQLEVKSDSTSTNS-EDIEVSCESGVTND 165

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTSM 4548
                 E   +E   WTS+Q  E  +++  FMK   K C +C  KNP +  P FGW+    
Sbjct: 166  SSQECEDPDMEDQRWTSLQFAEVTAVMKNFMKLTSKECNKCKAKNPKLEKPMFGWVRMKG 225

Query: 4547 PNKS-IRENVILGSKLKQPYLGENNVDSDDVESSGAVYDEMSDSATKTYKKSKGSLLTKV 4371
             N S +  N+I G K+K+      N D   +++     D   +      K+ K + + K 
Sbjct: 226  MNASAVGANLIRGLKVKKSTSSVENPDDSGIDALSEAEDSDKE------KREKSTEIAKE 279

Query: 4370 SKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMFFIEALV 4191
             ++ K +   L P+E +  +K LW+NE+  CS I ++ Q        + ++SMFF+E+++
Sbjct: 280  FEKQKDTKRDLLPSEVRAILKNLWENEHEYCSFIGDLWQSG----SEKIDYSMFFLESVL 335

Query: 4190 VPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNN---SRVAPRWMELQQSVN 4020
            VPPIKFRPP+KGG SVMEHPQT  L++VL  N++LGNA  N    S+V  RWM LQ+SVN
Sbjct: 336  VPPIKFRPPTKGGDSVMEHPQTVGLNKVLLSNITLGNACTNKLDQSKVISRWMNLQESVN 395

Query: 4019 VLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLAVNEIGI 3840
            VLF +K ++ Q    G+GICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPY+AVNEIGI
Sbjct: 396  VLFDSKAASVQSQKDGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNEIGI 455

Query: 3839 PPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKSRNSISR 3660
            PP FAL+L YPERVTPWNV KLR AIINGP+VHPGAT   DK +  KLP S K R +I+ 
Sbjct: 456  PPCFALKLIYPERVTPWNVEKLREAIINGPDVHPGATHYSDKLSTVKLPSSVKERTAIAN 515

Query: 3659 KLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEK 3480
            KL SSRG   + GK+ +   EGKVVYR ++DGDVVLVNRQPTLHKPS+MAH+VRVLKGEK
Sbjct: 516  KLLSSRGATTELGKTCDINFEGKVVYRQMRDGDVVLVNRQPTLHKPSLMAHIVRVLKGEK 575

Query: 3479 TIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTKRGLIQD 3300
            T+R+HYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNANNQY  P++GD  R LIQD
Sbjct: 576  TLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQD 635

Query: 3299 HIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEIQYLLPA 3120
            HIVS+VLLTKRDTFL  + +N LL++SGV+        GK G+ V+   ++ E+  ++PA
Sbjct: 636  HIVSSVLLTKRDTFLDKDLFNQLLFSSGVTDMVLSSFSGKSGKKVTISASDAELLTVMPA 695

Query: 3119 IWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQS------------- 2979
            I KPVPLWTGKQVIT++LN +T  +G  PFTV+K + +  ++F  +S             
Sbjct: 696  ILKPVPLWTGKQVITTVLNLIT--KGHPPFTVEKATKLPVDFFKCRSREVKPNTGDLTKK 753

Query: 2978 -----------GEGKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSR 2832
                        E K  I KN FV GVIDK+QF  +G++HTV ELYGS+AAG LLS  SR
Sbjct: 754  KDIDESWKQDLNEDKLLIRKNEFVCGVIDKAQFADFGMVHTVHELYGSNAAGNLLSVFSR 813

Query: 2831 LFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFK-NGDIDEMTL 2661
            LFT FLQ+HGFTCGVDDL+I+K +D ER K  +   +VGE+V  +  G   +  ID   +
Sbjct: 814  LFTAFLQIHGFTCGVDDLIILKDMDEERTKQLQECEKVGERVLRKTFGIDVDRQIDPQDM 873

Query: 2660 QEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLM 2481
            +  IE+++  +GESA A LD+ + +      N+ + K   ++    GLLK   +NC  LM
Sbjct: 874  RSRIERILYEDGESALASLDRSIVND----LNQCSSKGVMNDLLSDGLLKTPGKNCISLM 929

Query: 2480 TASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLT 2301
            T SGAKGS+VNFQQISS LGQQ+LEGKRVPRM+SGKTLPCF PWD S RAGGFISDR+L+
Sbjct: 930  TISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLS 989

Query: 2300 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQF 2121
            GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKV YD TVRDADGS++QF
Sbjct: 990  GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQF 1049

Query: 2120 CYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRTR 1941
             YGEDGVDVH++SF+ KFK L VNQ +V +  S+         S  Y+ +LP +L+K   
Sbjct: 1050 QYGEDGVDVHRSSFIGKFKELTVNQDMVLQRCSED----MLSGSSSYISDLPISLKKDAE 1105

Query: 1940 DFINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTLNT 1761
             F+  +           + + +           LA+PGEPVGV+AAQS+GEPSTQMTLNT
Sbjct: 1106 KFVEAMPMNERIASKFVRQEELLKLVKSKYFESLAQPGEPVGVLAAQSVGEPSTQMTLNT 1165

Query: 1760 FHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSV 1581
            FH AG+ GE+NVTLGIPRLQEILM A+ +I+TP+MTCPL +GKT++DA+ +  KL K++V
Sbjct: 1166 FHLAGR-GEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKEDANDITDKLRKITV 1224

Query: 1580 ADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDEL 1401
            AD+++ ME+ VVP+++HKN  C+++KLK+ LY PE YP+ +DI+ +D EET++++F+ +L
Sbjct: 1225 ADIIKDMELSVVPYTIHKNDICSIHKLKINLYKPEHYPKNTDITEEDWEETMKVVFLRKL 1284

Query: 1400 ERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXX 1221
            E AI  H+ ML ++ GI+N +Q      G ETD+D     KQ                  
Sbjct: 1285 EDAIEIHMKMLHRMRGIRNFVQDTSPTAGNETDNDNSISGKQT--------EDDDDGEGT 1336

Query: 1220 XXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTETDN 1041
                    AQKR+ QA DEMDYE++          SE+   EPS+ S  E    D E DN
Sbjct: 1337 EVDDLGSDAQKRKKQATDEMDYEEN----------SEDETNEPSSISGVE----DPEIDN 1382

Query: 1040 DVDDKVQIFDAEDESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEGLDF 861
            + +D V++       + + V   K N K +S    KK + K      +R +FV+ EG  F
Sbjct: 1383 ENED-VEVSKEGTPEQQKEVKKVK-NVKQQS----KKKRRKYVGADEDRHIFVKGEGEKF 1436

Query: 860  EVHLRF-TDEPYILLSEIAQKAAKNVYIKRAGNINQCSVV-------------------- 744
            EVH +F T EP+ILL++IAQK A+ VYI+ +G I +C+V                     
Sbjct: 1437 EVHFKFPTSEPHILLAQIAQKTAQKVYIQNSGKIERCTVANCGDPQVIYHGDDPKERREI 1496

Query: 743  ---EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQVNA 573
               EK     L  +GV+F A WE QD LDV  + SN IH +   +GVEAAR T+I+++N 
Sbjct: 1497 SNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINH 1556

Query: 572  VFEDHGISVNIRHLTLVADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEFIIEAAY 396
            VF+ +GISV+IRHL L+AD+MT  G YRPMSR  G+A STSP  +M++ETA +FI++AA 
Sbjct: 1557 VFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAAT 1616

Query: 395  HGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            +GE D LE+PSARICLGLP   GTGCFDLMQ+VE
Sbjct: 1617 YGEKDTLETPSARICLGLPALSGTGCFDLMQRVE 1650


>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
            lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
            ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
          Length = 1678

 Score = 1545 bits (4001), Expect = 0.0
 Identities = 837/1657 (50%), Positives = 1097/1657 (66%), Gaps = 59/1657 (3%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGLYDP LGP++D   C +CGQ +  CPGHCGHI+LV P+Y+P           + C
Sbjct: 60   PYPGGLYDPKLGPIEDKKACDTCGQLNLACPGHCGHIELVYPIYHPLLFNLLYNFLQRTC 119

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            F CHHF  +   VE+  SQL+LIIKGD+V AK ++S +P+++    ++  V+        
Sbjct: 120  FICHHFMAKPYDVERAVSQLKLIIKGDIVSAKQLESNTPTKS----DSSDVSCESGVTTD 175

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWI-YTS 4551
               G E   +E   WTS+Q  E  +++  FM+   KSC RC   NP +  P FGW+   +
Sbjct: 176  SSEGCEDSDMEDQRWTSLQFAEVTAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGWVRMKA 235

Query: 4550 MPNKSIRENVILGSKLKQPYLGENNVDSDDVESSGA-VYDEMSDSATKTYKKSKGSLLTK 4374
            M    I  NVI G KLK+      N   DD + SG     E+ D   +T +KS   ++ +
Sbjct: 236  MKGSDIVANVIRGLKLKKSTSSVEN--PDDFDDSGIDALSEVEDGDKETREKST-EVVKE 292

Query: 4373 VSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMFFIEAL 4194
              +    S   L PTE ++ +K LW+NE+  CS I ++ Q        + ++SMFF+E++
Sbjct: 293  FEEHNNSSKRDLLPTEVREILKDLWENEHDFCSFIGDLWQSG----SEKIDYSMFFLESV 348

Query: 4193 VVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNN---SRVAPRWMELQQSV 4023
            +VPPIKFRP +KGG SVMEHPQT  L++VL  N+ LGNA  N    S++  RWM LQ+SV
Sbjct: 349  LVPPIKFRPSTKGGDSVMEHPQTVGLNKVLGSNIQLGNACTNKLDQSKIISRWMNLQESV 408

Query: 4022 NVLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLAVNEIG 3843
            NVLF +K +T Q    G+GICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPY+AVN+IG
Sbjct: 409  NVLFDSKTATVQSQREGSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIG 468

Query: 3842 IPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKSRNSIS 3663
            IPP FAL+LTYPERVTPWNV KLR AIINGP++HPGAT   DK +  KLP + K+R +I+
Sbjct: 469  IPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKLSTVKLPSTEKARRAIA 528

Query: 3662 RKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 3483
            RKL SSRG   + GK+ +   EGK V+RH++DGDVVLVNRQPTLHKPS+MAH+VRVL+GE
Sbjct: 529  RKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDVVLVNRQPTLHKPSLMAHIVRVLRGE 588

Query: 3482 KTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTKRGLIQ 3303
            KT+R+HYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNANNQY  P++GD  R LIQ
Sbjct: 589  KTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQ 648

Query: 3302 DHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEIQYLLP 3123
            DHIVS+VLLTKRDTFL  + +N LL++SGV+        G+ G+ V    ++ E+  + P
Sbjct: 649  DHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSSFSGRSGKKVMVSASDAELLTVTP 708

Query: 3122 AIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQS------------ 2979
            AI KPVPLWTGKQVIT++LN +T  +G  PFTV+K + +  ++F  +S            
Sbjct: 709  AILKPVPLWTGKQVITAVLNQIT--KGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTK 766

Query: 2978 ------------GEGKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLS 2835
                         E K  I KN FV GVIDK+QF  YGL+HTV ELYGS+AAG LLS  S
Sbjct: 767  KKKIDESWKQNLNEDKLLIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFS 826

Query: 2834 RLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFK-NGDIDEMT 2664
            RLFTVFLQ+HGFTCGVDDL+I+K +D ER K  +    VGE+V  +  G   +  ID   
Sbjct: 827  RLFTVFLQIHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQD 886

Query: 2663 LQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFL 2484
            ++  IE+++  +GESA A LD+ + +      N+ + K   ++    GLLK    NC  L
Sbjct: 887  MRSRIERILYEDGESALASLDRSIVND----LNQCSSKGVMNDLLSDGLLKTPGMNCISL 942

Query: 2483 MTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYL 2304
            MT SGAKGS+VNFQQISS LGQQ+LEGKRVPRM+SGKTLPCF PWD S RAGGFISDR+L
Sbjct: 943  MTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFL 1002

Query: 2303 TGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQ 2124
            +GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LK+ YD TVRDADGS++Q
Sbjct: 1003 SGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKINYDCTVRDADGSIIQ 1062

Query: 2123 FCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRT 1944
            F YGEDGVDVH++SF+ KFK LA+NQ +V +  S+         ++ Y+ +LP +L+   
Sbjct: 1063 FQYGEDGVDVHRSSFIEKFKELAINQDMVLQRCSED----MLSGANSYISDLPISLKNGA 1118

Query: 1943 RDFINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTLN 1764
              F+  +           + + +           LA+PGEPVGV+AAQS+GEPSTQMTLN
Sbjct: 1119 EKFVEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLN 1178

Query: 1763 TFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVS 1584
            TFH AG+ GE+NVTLGIPRLQEILM A+ +I+TP+MTCPL +GKT++DA+ +  KL K++
Sbjct: 1179 TFHLAGR-GEMNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKEDANDITGKLRKIT 1237

Query: 1583 VADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDE 1404
            VAD+++SM++ VVP++V+KN+ C+++KLK+ LY PE YP+ +DI+ KD EET+ ++F+ +
Sbjct: 1238 VADIIKSMDLSVVPYTVYKNEVCSIHKLKINLYKPEHYPKHTDITEKDWEETMTVVFLRK 1297

Query: 1403 LERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXX 1224
            LE AI  H+ ML +I GI N  +  E+G+  + DD +  K+ +                 
Sbjct: 1298 LEDAIEIHMKMLHRIRGICND-KGPEAGNETDNDDSVSGKQNK--------DDGDDDGEG 1348

Query: 1223 XXXXXXXXXAQKRRWQARDEMDYED--DDIENEISMIGSENIEGEPSAGSESEVDQVDTE 1050
                     AQK++ Q  DEMDYE+  +D  NE S I       +P   SE+E  +V  E
Sbjct: 1349 TEVDDLGSDAQKQKKQVTDEMDYEENSEDETNEPSSISGVE---DPEMDSENEDAEVSKE 1405

Query: 1049 TDNDVDDKVQIFDAEDESRARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEAEG 870
               +  ++  +   E     + V   K N K +S    KK + K    + +R +FV  EG
Sbjct: 1406 DTPEPQEEADVSKEETMEPQKEVKAVK-NVKEQS----KKKRRKFVGATSDRHIFVRGEG 1460

Query: 869  LDFEVHLRF-TDEPYILLSEIAQKAAKNVYIKRAGNINQCSVV----------------- 744
              FEVH +F TD+P+ILL++IAQK A+ VYI+ +G I +C+V                  
Sbjct: 1461 EKFEVHFQFATDDPHILLAQIAQKTAQKVYIQDSGKIERCTVANCGDPQVIYHGDNPKER 1520

Query: 743  ------EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQ 582
                  EK     L  +GV+F A WE QD LDV  + SN IH +   +GVEAAR T+I++
Sbjct: 1521 REISNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNVFGVEAARETIIRE 1580

Query: 581  VNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEFIIE 405
            +N VF+ +GISV+IRHL L+AD+MT  G YRPMSR  G+A STSP  +M++ETA +FI++
Sbjct: 1581 INHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQ 1640

Query: 404  AAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            AA +GE D LE+PSARICLGLP   GTGCFDLMQ+VE
Sbjct: 1641 AATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVE 1677


>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
            gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
            190K chain-like protein [Arabidopsis thaliana]
            gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
            [Arabidopsis thaliana]
          Length = 1670

 Score = 1537 bits (3979), Expect = 0.0
 Identities = 842/1659 (50%), Positives = 1101/1659 (66%), Gaps = 61/1659 (3%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGLYD  LGP DD   C SCGQ    CPGHCGHI+LV P+Y+P           + C
Sbjct: 60   PFPGGLYDLKLGPKDDKQACNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRAC 119

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSREN-DSVNVNDATCH 4731
            FFCHHF  + E VE+  SQL+LIIKGD+V AK ++S +P+++  S E+ +SV   D++  
Sbjct: 120  FFCHHFMAKPEDVERAVSQLKLIIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSS-- 177

Query: 4730 SRMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWI-YT 4554
                  E   +E   WTS+Q  E  ++L  FM+   KSC RC   NP +  P FGW+   
Sbjct: 178  ---EECEDSDVEDQRWTSLQFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMR 234

Query: 4553 SMPNKSIRENVILGSKLKQPYLGENNVDSDDVESSGAVYDEMSDSATKTYKKSKGSLLTK 4374
            +M +  +  NVI G KLK+      N D  D     A+  E+ D   +T +KS     T+
Sbjct: 235  AMKDSDVGANVIRGLKLKKSTSSVENPDGFDDSGIDAL-SEVEDGDKETREKS-----TE 288

Query: 4373 VSKQTKF--SPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMFFIE 4200
            V+ + +   S   L P+E ++ +K LWQNE+  CS I ++ Q        + ++SMFF+E
Sbjct: 289  VAAEFEEHNSKRDLLPSEVRNILKHLWQNEHEFCSFIGDLWQSG----SEKIDYSMFFLE 344

Query: 4199 ALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNN---SRVAPRWMELQQ 4029
            +++VPP KFRPP+ GG SVMEHPQT  L++V++ N  LGNA  N    S+V  RW  LQ+
Sbjct: 345  SVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFRWRNLQE 404

Query: 4028 SVNVLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLAVNE 3849
            SVNVLF +K +T Q     +GICQLLEKKEG+FRQK+MGKRVN+ACRSVISPDPY+AVN+
Sbjct: 405  SVNVLFDSKTATVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVND 464

Query: 3848 IGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKSRNS 3669
            IGIPP FAL+LTYPERVTPWNV KLR AIINGP++HPGAT   DKS+  KLP + K+R +
Sbjct: 465  IGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRA 524

Query: 3668 ISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLK 3489
            I+RKL SSRG   + GK+ +   EGK V+RH++DGD+VLVNRQPTLHKPS+MAH VRVLK
Sbjct: 525  IARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLK 584

Query: 3488 GEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTKRGL 3309
            GEKT+R+HYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNANNQY  P++G+  R L
Sbjct: 585  GEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRAL 644

Query: 3308 IQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEIQYL 3129
            IQDHIVS+VLLTKRDTFL  + +N LL++SGV+        G+ G+ V    ++ E+  +
Sbjct: 645  IQDHIVSSVLLTKRDTFLDKDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTV 704

Query: 3128 LPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEYFGSQS---------- 2979
             PAI KPVPLWTGKQVIT++LN +T  +G  PFTV+K + +  ++F  +S          
Sbjct: 705  TPAILKPVPLWTGKQVITAVLNQIT--KGHPPFTVEKATKLPVDFFKCRSREVKPNSGDL 762

Query: 2978 --------------GEGKFFIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLST 2841
                           E K  I KN FV GVIDK+QF  YGL+HTV ELYGS+AAG LLS 
Sbjct: 763  TKKKEIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSV 822

Query: 2840 LSRLFTVFLQMHGFTCGVDDLLIVKSLDMERGKIFE--RRVGEQVHAEFLGFK-NGDIDE 2670
             SRLFTVFLQ HGFTCGVDDL+I+K +D ER K  +    VGE+V  +  G   +  ID 
Sbjct: 823  FSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDP 882

Query: 2669 MTLQEEIEKVMRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCF 2490
              ++  IE+++  +GESA A LD+ +        N+ + K   ++    GLLK   RNC 
Sbjct: 883  QDMRSRIERILYEDGESALASLDRSI----VNYLNQCSSKGVMNDLLSDGLLKTPGRNCI 938

Query: 2489 FLMTASGAKGSQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDR 2310
             LMT SGAKGS+VNFQQISS LGQQ+LEGKRVPRM+SGKTLPCF PWD S RAGGFISDR
Sbjct: 939  SLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDR 998

Query: 2309 YLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSV 2130
            +L+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K+LE LKV YD TVRDADGS+
Sbjct: 999  FLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSI 1058

Query: 2129 VQFCYGEDGVDVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEK 1950
            +QF YGEDGVDVH++SF+ KFK L +NQ +V +  S+         +  Y+ +LP +L+K
Sbjct: 1059 IQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSED----MLSGASSYISDLPISLKK 1114

Query: 1949 RTRDFINKLSKKHHSFRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMT 1770
                F+  +           + + +           LA+PGEPVGV+AAQS+GEPSTQMT
Sbjct: 1115 GAEKFVEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMT 1174

Query: 1769 LNTFHHAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMK 1590
            LNTFH AG+ GE+NVTLGIPRLQEILM A+ NI+TP+MTCPL +GKT++DA+ +  +L K
Sbjct: 1175 LNTFHLAGR-GEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRK 1233

Query: 1589 VSVADLVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFV 1410
            ++VAD+++SME+ VVP++V++N+ C+++KLK+ LY PE YP+ +DI+ +D EET+  +F+
Sbjct: 1234 ITVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFL 1293

Query: 1409 DELERAIRTHLTMLSKISGIKNILQRNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXX 1230
             +LE AI TH+ ML +I GI N +    +G+  + DD +  K+ +               
Sbjct: 1294 RKLEDAIETHMKMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQNE--------DDGDDDG 1345

Query: 1229 XXXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTE 1050
                       AQK++ Q  DEMDYE++          SE+   EPS+ S  E  ++D+E
Sbjct: 1346 EGTEVDDLGSDAQKQKKQETDEMDYEEN----------SEDETNEPSSISGVEDPEMDSE 1395

Query: 1049 TDNDVDDKVQIFDAEDESR--ARSVSGAKLNEKHKSDHEGKKTKPKRAKKSWERTVFVEA 876
             ++    K    + ++ES    + V G K N K +S    KK + K  +   +R +FV+ 
Sbjct: 1396 NEDTEVSKEDTPEPQEESMEPQKEVKGVK-NVKEQS----KKKRRKFVRAKSDRHIFVKG 1450

Query: 875  EGLDFEVHLRF-TDEPYILLSEIAQKAAKNVYIKRAGNINQCSVV--------------- 744
            EG  FEVH +F TD+P+ILL++IAQ+ A+ VYI+ +G I +C+V                
Sbjct: 1451 EGEKFEVHFKFATDDPHILLAQIAQQTAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPK 1510

Query: 743  --------EKDKECELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLI 588
                    EK     L  +GV+F A WE QD LDV  + SN IH +   +GVEAAR T+I
Sbjct: 1511 ERREISNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETII 1570

Query: 587  KQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEFI 411
            +++N VF+ +GISV+IRHL L+AD+MT  G YRPMSR  G+A STSP  +M++ETA +FI
Sbjct: 1571 REINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFI 1630

Query: 410  IEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKVE 294
            ++AA +GE D LE+PSARICLGLP   GTGCFDLMQ+VE
Sbjct: 1631 VQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVE 1669


>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
            gi|557103957|gb|ESQ44311.1| hypothetical protein
            EUTSA_v10005738mg [Eutrema salsugineum]
          Length = 1697

 Score = 1522 bits (3940), Expect = 0.0
 Identities = 839/1695 (49%), Positives = 1099/1695 (64%), Gaps = 97/1695 (5%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGLYDP +GPLDD T C+SCGQ S +CPGHCGHI+LV P+Y+P           + C
Sbjct: 47   PVPGGLYDPLMGPLDDRTSCKSCGQLSLVCPGHCGHIELVYPIYHPLLFNLLYNFLQRTC 106

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            FFCHHF      VE+C SQL+LI+KG++V AK +DS +      S E +   +    C  
Sbjct: 107  FFCHHFMANKNDVERCVSQLKLIMKGNLVAAKQLDSRATDS---SEECEDSEMEKERC-- 161

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWI-YTS 4551
                 E   + +  WTS+Q  E   L++ F++ K KSC  C  K P +  P FGW+    
Sbjct: 162  -----EDSDMGKQRWTSLQFAEVTDLMNTFLRLKSKSCGSCKAKPPKLEKPMFGWVRIVG 216

Query: 4550 MPNKSIRENVILGSKLKQPYLG-ENNVDSDDVESSGAVYDEMSDSATKTYKKSKGSLLTK 4374
            M   +I  NVI G K+K+     EN  DSDD  S      E+ D + K  +KS   +  +
Sbjct: 217  MSASAIGANVIRGIKVKKSASSVENPNDSDD--SGIDALSEVEDGSEKKKRKSS-EVAEE 273

Query: 4373 VSKQTKFSPGPLWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSMFFIEAL 4194
             +K    +   L+P+E K  +K LW+NE+  CS I ++ Q E        ++SMFF+E +
Sbjct: 274  FAKHQNNTRRDLFPSEVKKILKGLWENEHEFCSFIGDLWQSE----SENVDYSMFFLENI 329

Query: 4193 VVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSLGNAHMNN---SRVAPRWMELQQSV 4023
            +VPP KFR P+KGG SVMEHPQT  L++VL+ N+SLGNA  N     ++  RWM LQ+SV
Sbjct: 330  LVPPTKFRAPTKGGDSVMEHPQTVGLNKVLESNISLGNACTNKLDQPKIISRWMNLQESV 389

Query: 4022 NVLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLAVNEIG 3843
            NVLF +K +T +    GTGICQ LEKKEG+FRQK+MGKRVN+ACRSVISPDP++AVN+IG
Sbjct: 390  NVLFDSKTATVKSQKEGTGICQTLEKKEGLFRQKMMGKRVNHACRSVISPDPFIAVNDIG 449

Query: 3842 IPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKSRNSIS 3663
            IPP FAL+LTYPERVTPWNV KLR AIINGP++HPGAT   DK +  KLP +RK+R +I+
Sbjct: 450  IPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKVSTMKLPPTRKARIAIA 509

Query: 3662 RKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGE 3483
            RKL SSRGV  + GK+ +   EGKVVYRH+QDGDVVLVNRQPTLHKPSIMAH+VRVLKGE
Sbjct: 510  RKLFSSRGVTTELGKTCDVNFEGKVVYRHMQDGDVVLVNRQPTLHKPSIMAHMVRVLKGE 569

Query: 3482 KTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTKRGLIQ 3303
            KT+R+HYANCSTYNADFDGDEMNVHFPQDEISRAEA NIVNANNQY  P++GD  R LIQ
Sbjct: 570  KTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYSRPSNGDPLRALIQ 629

Query: 3302 --------------------------------DHIVSAVLLTKRDTFLTWEDYNHLLYTS 3219
                                            DHIVS+VLLTKRDTFL  +++N LL++S
Sbjct: 630  VVHPSYFFKSLYSFHELGCLPVIFMDLACTQQDHIVSSVLLTKRDTFLDKDEFNQLLFSS 689

Query: 3218 GVSAAARGGSIGKFGQNVSSINTEDEIQYLLPAIWKPVPLWTGKQVITSILNHMTRIRGL 3039
            GV+        G+ G+ V    +  E+  + PAI KPVPLWTGKQVIT++LN +T+  G 
Sbjct: 690  GVTDMVLSSFSGRSGKKVIQSASNAELLTVTPAILKPVPLWTGKQVITAVLNEITK--GH 747

Query: 3038 RPFTVKKPSTIRKEYFGSQS------------------------------GEGKFFIHKN 2949
             PF+V+K + +  ++F  +S                               E K  + KN
Sbjct: 748  PPFSVEKATKLPVDFFKCRSKEVKCKSGESNEKNHLTTKQDFDESWKKDLNEDKLLVRKN 807

Query: 2948 YFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFLQMHGFTCGVDDLLIV 2769
             FV GVIDK+QF  YGL+HTV ELYGS+AAG LLS  SRLFTVFLQ+ GFTCGVDDL+I+
Sbjct: 808  EFVRGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQLQGFTCGVDDLIIL 867

Query: 2768 KSLDMERGKIFER--RVGEQVHAEFLGFK-NGDIDEMTLQEEIEKVMRVNGESATARLDK 2598
            K +D ER K  +   +VGE+V  +  G   +  ID   ++  IE+++  +GESA A LD+
Sbjct: 868  KDMDGERTKQLQECEQVGERVLRKTFGIAVDVQIDPQDMKSRIERILYEDGESALASLDR 927

Query: 2597 MMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMTASGAKGSQVNFQQISSLLGQ 2418
             + +      N+ + K   ++    GLLKP  +NC  LMT SGAKGS+VNFQQISS LGQ
Sbjct: 928  SVVNE----LNQCSSKGVMNDLLSDGLLKPPGKNCISLMTISGAKGSKVNFQQISSHLGQ 983

Query: 2417 QELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGLRPQEYYFHCMAGREGLVDT 2238
            Q+LEGKRVPRM+SGKTLPCF PWD S RAGGFISDR+L+GLRPQEYYFHCMAGREGLVDT
Sbjct: 984  QDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDT 1043

Query: 2237 AVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGVDVHKTSFLSKFKTL 2058
            AVKTSRSGYLQRCL+K+LE LKV YD TVRDADGS++QF YGEDGVDVH++SF+ KF+ L
Sbjct: 1044 AVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDVHRSSFIGKFREL 1103

Query: 2057 AVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRDFINKLSKKHHSFRHSRKPKG 1878
             VNQ ++ +  S+         S  Y+ +LP  L+     F+  +           + + 
Sbjct: 1104 TVNQDMILQRCSED----MLSGSSSYITDLPITLKNGAEKFVEAMPMNERIASKLVRQED 1159

Query: 1877 IXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTLNTFHHAGQGGEVNVTLGIPRLQE 1698
            +           LA+PGEPVGV+AAQS+GEPSTQMTLNTFH AG+ GE+NVTLGIPRLQE
Sbjct: 1160 LLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGR-GEMNVTLGIPRLQE 1218

Query: 1697 ILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVADLVESMEVCVVPFSVHKNQA 1518
            ILM A+ NI+TP+MTCPL +GKT DDA ++  KL K++VAD+++SMEV V+P++VH+ + 
Sbjct: 1219 ILMTAAANIKTPIMTCPLLKGKTTDDAKKITDKLRKIAVADIIKSMEVSVIPYAVHEGEV 1278

Query: 1517 CTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELERAIRTHLTMLSKISGIKNIL 1338
            C+++KLK+KLY PE YP+ +DI+ +D +ET+ +MF+ +LE AI  H+ ML +I GIK+  
Sbjct: 1279 CSIHKLKIKLYKPEHYPKHTDITDEDWKETMTVMFLRKLEDAIEIHVKMLVRIRGIKSEK 1338

Query: 1337 Q-RNESGDGEETDDDLGSKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXAQKRRWQARDEM 1161
              R  SG+  + DD +  K  +                          AQK++ QA D +
Sbjct: 1339 DTRPTSGNETDNDDSVSGKHTE-------DDDDDDEGEGTEVDDLGADAQKQKKQAVDVV 1391

Query: 1160 DYEDDDIENEISMIGSENIEGEPSAGSESEVDQVDTETDNDVDDKVQIFDAEDESRARSV 981
            DYE++          SE+ + EPS+ S  E  + D E +N    + +  + ++++     
Sbjct: 1392 DYEEN----------SEDEKDEPSSISGVEDPETDNEDENAEVSREETPEPQEDADVSKE 1441

Query: 980  SGAKLNEKHKSDHEG-KKTKPKRAKKSWERTVFVEAEGLDFEVHLRF-TDEPYILLSEIA 807
               +  ++ K+  EG +K + K      +R +F + +G  FEVH +F ++EP+ILLS+IA
Sbjct: 1442 ETLEPQKEVKNVEEGSRKKRRKFVPGKNDRHIFAKFKGKTFEVHFKFLSEEPHILLSQIA 1501

Query: 806  QKAAKNVYIKRAGNINQCSVV-----------------------EKDKECELQTAGVNFQ 696
            QK A+ VYI+ +G I + +V                        EK     L  +GV+F 
Sbjct: 1502 QKTAQKVYIQNSGKIERSTVANCGDPQVIYYGDNPKEREEISNDEKKASPALHASGVDFL 1561

Query: 695  AFWEMQDDLDVNQILSNDIHAIFQTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVAD 516
            A WE QD LDV  + SN IH +  T+GVEAAR T+I+++N VF+ +GISV+IRHL L+AD
Sbjct: 1562 ALWEYQDKLDVRYLYSNSIHDMLNTFGVEAARETIIREINHVFKSYGISVSIRHLNLIAD 1621

Query: 515  FMTQHGRYRPMSR-HGMAVSTSPLSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLP 339
            +MT  G YRPMSR  G+A STSP  +M++ETA +FI++AA +GEVD LE+PSARICLGLP
Sbjct: 1622 YMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEVDRLETPSARICLGLP 1681

Query: 338  VKMGTGCFDLMQKVE 294
               GTGCFDL+Q++E
Sbjct: 1682 ALSGTGCFDLLQRME 1696


>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
            italica]
          Length = 1682

 Score = 1517 bits (3928), Expect = 0.0
 Identities = 845/1671 (50%), Positives = 1078/1671 (64%), Gaps = 74/1671 (4%)
 Frame = -3

Query: 5087 PKPGGLYDPALGPLDDATLCRSCGQRSFLCPGHCGHIDLVLPVYNPXXXXXXXXXXXKYC 4908
            P PGGL DPA+GP++D   C+SCGQ S  CPGH GHI+L  P++NP             C
Sbjct: 65   PVPGGLLDPAMGPINDTDTCKSCGQHSVRCPGHFGHIELAKPLFNPLLFTSLKNLLHVTC 124

Query: 4907 FFCHHFRDEVELVEKCSSQLELIIKGDVVGAKNVDSPSPSEALLSRENDSVNVNDATCHS 4728
            F CH FR   E V++  ++LEL++KGDV  AKN++  S   A  S E++  ++ +AT   
Sbjct: 125  FHCHKFRLNKEQVDRYVNELELLVKGDVARAKNLED-SGKRASPSEEDE--DITEATSCD 181

Query: 4727 RMHGFETKHLEQHSWTSIQHGEAMSLLDGFMKRKKKSCKRCGLKNPSITCPTFGWIYTSM 4548
            +     +   ++ +WTS+Q  E +S+    MK+++K C +C +K+P+ + P FGW+    
Sbjct: 182  K----PSPEKDKKTWTSVQLKEVLSIFSKIMKKRQKKCAKCDMKSPTFSSPIFGWLVKDT 237

Query: 4547 PNKSIRENVILGSKLKQPYLGENNVDSDDVESSGAVYDEMSDSATKTYKKSKGS------ 4386
               ++R N I   KLK    G+    S   E+  + +DE      +T  +SKGS      
Sbjct: 238  SASAVRANAIADFKLK----GDGGAHSSG-ETGVSGFDE-----ERTSPQSKGSINEVRH 287

Query: 4385 LLTKVSKQTKFSPGP--LWPTETKDRIKLLWQNENRLCSLISNIQQDELCMPENRGNHSM 4212
            L     K+   S G   L PTE +  +K LW+NE R C L+ + QQD L + E R  + M
Sbjct: 288  LSDDTIKEFVASSGKKHLLPTEVESILKGLWKNEARFCMLLCDFQQDTLSVSEKRKGYEM 347

Query: 4211 FFIEALVVPPIKFRPPSKGGTSVMEHPQTTLLSQVLQCNLSL--GNAHMNNSRVAPRWME 4038
            FF+ +L+V P +FRP +     +MEHPQ  LLS+V + NL+L   +A  N+  V  RWM+
Sbjct: 348  FFLNSLLVAPNRFRPSTSSSLGIMEHPQNVLLSKVQEANLALQHNSASSNHMDVLRRWMD 407

Query: 4037 LQQSVNVLFGNKKSTSQRDNAGTGICQLLEKKEGIFRQKLMGKRVNYACRSVISPDPYLA 3858
            LQ+SVNVL+ + K   + +    GI QLLEKKEGI RQK+MGKRVNYACRSVISPDPYLA
Sbjct: 408  LQRSVNVLYDSSKGIVKSEKNAHGIRQLLEKKEGILRQKMMGKRVNYACRSVISPDPYLA 467

Query: 3857 VNEIGIPPYFALRLTYPERVTPWNVTKLRNAIINGPEVHPGATLCIDKSTKTKLPLSRKS 3678
            VNEIGIPP FA RLTYPE+VTPWN  KL+ A+ NG ++HPGAT   D S   KL  +   
Sbjct: 468  VNEIGIPPVFATRLTYPEKVTPWNAKKLQEAVRNGADIHPGATHYRDNSNIYKLQAAPAK 527

Query: 3677 RNSISRKLPSSRGVVVQPGKSLEHELEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVR 3498
            R +I++ LP+SRG + QPGK    E E KVVYRHLQDGD+VLVNRQPTLHKPS+MAH VR
Sbjct: 528  RRAIAKMLPASRGSISQPGKDPNCEFESKVVYRHLQDGDIVLVNRQPTLHKPSMMAHFVR 587

Query: 3497 VLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEALNIVNANNQYIIPTSGDTK 3318
            VL GEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEA+NIV+AN QYI P SGD  
Sbjct: 588  VLPGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAMNIVDANKQYIGPRSGDAV 647

Query: 3317 RGLIQDHIVSAVLLTKRDTFLTWEDYNHLLYTSGVSAAARGGSIGKFGQNVSSINTEDEI 3138
            RGLIQDHIV AVLLTK+DT L+ E+Y+ L+Y S V +        + G  VS+I  +D +
Sbjct: 648  RGLIQDHIVGAVLLTKQDTLLSREEYSQLVYGSCVPS---NWGPRQPGIKVSAIKDDDAL 704

Query: 3137 QYLLPAIWKPVPLWTGKQVITSILNHMTRIRGLRPFTVKKPSTIRKEY-----FGSQSGE 2973
             ++LPAI KP PLWTGKQVIT+ILNH+T+  G  PFTV++   I +E+     F     E
Sbjct: 705  GFVLPAILKPKPLWTGKQVITTILNHLTK--GRSPFTVEQKGKISEEHLTPKKFEESESE 762

Query: 2972 GKF-------FIHKNYFVHGVIDKSQFGKYGLIHTVQELYGSHAAGVLLSTLSRLFTVFL 2814
             K        +I  N  + G+IDK+QFG+YG++HTV ELYG+  AG+LLST SRLFT+FL
Sbjct: 763  RKIAISELVLYIKNNELIKGMIDKAQFGQYGIVHTVHELYGADTAGILLSTFSRLFTLFL 822

Query: 2813 QMHGFTCGVDDLLIVKSLDMERGKIFER--RVGEQVHAEFLGFKNGDIDEMTLQEEIEKV 2640
            Q HGFTCGVDDLL+ +  D  R  I     +  E+ H  F+  K G  D   LQ E+EKV
Sbjct: 823  QFHGFTCGVDDLLLCQKADEARRSIISESDKYSEKAHGTFI--KTGK-DGEELQMEVEKV 879

Query: 2639 MRVNGESATARLDKMMSSRNAKLTNEVNDKLFPSNSSPVGLLKPFPRNCFFLMTASGAKG 2460
            +R +GESAT  +D+ +S+  + +T++VN  +FP      GL KPFP NC  LMTA+GAKG
Sbjct: 880  IRRDGESATVNMDREISNALSNITSDVNKNVFP-----YGLQKPFPGNCLTLMTATGAKG 934

Query: 2459 SQVNFQQISSLLGQQELEGKRVPRMISGKTLPCFPPWDPSSRAGGFISDRYLTGLRPQEY 2280
              VN  QISSLLGQQELEGKRVPRM+SGKTLPCF PWD SSRAGGFISDR+LTGLRPQEY
Sbjct: 935  GDVNMYQISSLLGQQELEGKRVPRMVSGKTLPCFLPWDTSSRAGGFISDRFLTGLRPQEY 994

Query: 2279 YFHCMAGREGLVDTAVKTSRSGYLQRCLVKSLECLKVCYDHTVRDADGSVVQFCYGEDGV 2100
            YFHCMAGREGL DTAVKTSRSGYLQRCL+K LE LKV YDHTVRD DGS+VQFCYGEDGV
Sbjct: 995  YFHCMAGREGLCDTAVKTSRSGYLQRCLIKCLESLKVSYDHTVRDVDGSIVQFCYGEDGV 1054

Query: 2099 DVHKTSFLSKFKTLAVNQKVVQEGLSDQSENAQFINSDGYMKELPEALEKRTRDFINKLS 1920
            DV KTSFL+KFK LA N+KVV + +    +N      +GY+  LP+ L    ++F+  L 
Sbjct: 1055 DVLKTSFLNKFKELADNKKVVLDKIKGHKQNQLLSKPNGYITTLPKKLVAEAKEFLKLLK 1114

Query: 1919 KKHHS-----FRHSRKPKGIXXXXXXXXXXXLAEPGEPVGVIAAQSIGEPSTQMTLNTFH 1755
            +K  S          K KG+           L +PGE VGV+AAQSIGEPSTQMTLNTFH
Sbjct: 1115 EKKSSDIKKGLMCDIKKKGLMKLLKVKYLYSLVDPGEAVGVVAAQSIGEPSTQMTLNTFH 1174

Query: 1754 HAGQGGEVNVTLGIPRLQEILMRASENIQTPVMTCPLRRGKTRDDADRLAAKLMKVSVAD 1575
             AG+G E+NVTLGIPRL+EILM AS NI TP+M CPL    TRDDA R+AAKL +V VAD
Sbjct: 1175 LAGRG-EMNVTLGIPRLKEILMTASANISTPIMVCPLLEKWTRDDARRVAAKLRRVRVAD 1233

Query: 1574 LVESMEVCVVPFSVHKNQACTLYKLKMKLYSPELYPRFSDISLKDCEETLEIMFVDELER 1395
            +VE +EVC VPF        TLYKL+MKLY  + YP  SD+++ +C+ TL  +FVD +E 
Sbjct: 1234 IVEKIEVCTVPFYNTNGHVSTLYKLQMKLYPQKHYPPQSDLTVDECQTTLRTVFVDAMEH 1293

Query: 1394 AIRTHLTMLSKISGIKNIL------------QRNES--GDGEET-----------DDDLG 1290
            AI  HL +L KI+ I+ +             + +ES  GDGEET           DDDLG
Sbjct: 1294 AIEKHLDLLHKINEIRAVKVNDAEGSLSDGGEESESRHGDGEETGMSDGDDENDNDDDLG 1353

Query: 1289 SKRKQAGXXXXXXXXXXXXXXXXXXXXXXXXAQKRRWQARDEMDYEDDDIENEISMIGSE 1110
            +                               +KR+ Q RDEM+Y DDD ENE  M    
Sbjct: 1354 TDA-----------------------------EKRKRQERDEMEY-DDDTENEEGMDSES 1383

Query: 1109 NIEG-------EPSAGSESEVDQVDTETDNDVDDKVQIFDAEDESRARSVSG-----AKL 966
              E        E  A S  ++ + D E      D   + D    ++    S      AKL
Sbjct: 1384 EEETKVKHQSEEDPAESGDDLQEADEEHKTSKSDMTSVDDMSYSAKKVKKSKDKHETAKL 1443

Query: 965  NEKH----KSDHEGKKTKPKRAKKSWERTVFVEAEGLDFEVHLRFTDEPYILLSEIAQKA 798
             E+     KSD   +     + KK  +RTV VE++ LDFE+H  F DEP+ILL++IAQK 
Sbjct: 1444 QERTHTEGKSDERKQDQMTYKRKKKLKRTVHVESKDLDFEIHYAFCDEPHILLAQIAQKT 1503

Query: 797  AKNVYIKRAGNINQCSVVEKDKE---CELQTAGVNFQAFWEMQDDLDVNQILSNDIHAIF 627
            A++++++   NI++C V EK ++     L+T+GVNF+ FW ++  + +N+I +NDIHA+ 
Sbjct: 1504 ARSIFVRACKNIDKCEVEEKKEKGSSAVLKTSGVNFEVFWNLRKYISINKITTNDIHAML 1563

Query: 626  QTYGVEAARATLIKQVNAVFEDHGISVNIRHLTLVADFMTQHGRYRPMSRHGMA-VSTSP 450
            +TYGVEAARAT+I++VN VF  +GI V+ RHL+++ADFMT  G YRPM+R GM   STSP
Sbjct: 1564 KTYGVEAARATIIEEVNHVFGVYGIKVDPRHLSMIADFMTFDGGYRPMNRLGMGQFSTSP 1623

Query: 449  LSKMSYETAAEFIIEAAYHGEVDYLESPSARICLGLPVKMGTGCFDLMQKV 297
              KM++ETA +FI++AA HGE D LE PSA ICLG P K+GTG F L+Q +
Sbjct: 1624 FGKMTFETATKFIVDAATHGESDSLECPSASICLGKPAKVGTGTFGLLQNL 1674