BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00006195
         (2053 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32760.3| unnamed protein product [Vitis vinifera]              555   e-155
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   555   e-155
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   551   e-154
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   529   e-147
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   528   e-147
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   528   e-147
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   522   e-145
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   520   e-145
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   515   e-143
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   515   e-143
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   514   e-143
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   514   e-143
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   497   e-138
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   495   e-137
gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   490   e-135
ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF,...   487   e-135
ref|XP_007162766.1| hypothetical protein PHAVU_001G178600g [Phas...   483   e-133
ref|XP_006410876.1| hypothetical protein EUTSA_v10016472mg [Eutr...   480   e-132
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     478   e-132
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   476   e-131

>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  555 bits (1431), Expect = e-155
 Identities = 307/570 (53%), Positives = 384/570 (67%), Gaps = 3/570 (0%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQ 325
            ME+G  +L S   FP +   RNS+  SV MLH+Q   +     TT     FP S LLQEQ
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSS-SVLMLHDQVAPAVASIPTTIAR-KFPTSVLLQEQ 58

Query: 326  HVEFRPL-LLMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLRSL 502
              E+RP    + D++  +  L++R+ +             + YM +FE+QLL    L   
Sbjct: 59   RDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYS 118

Query: 503  FPSLCTREK-PVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 679
             PS  T EK P SS+IM+SI  D ++  +V+P DV                  E + +  
Sbjct: 119  LPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLG 178

Query: 680  ADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLR 859
            AD E+     L    S +L +E     E  V+S             PK    VH+    R
Sbjct: 179  ADLEDSPSPSLGAISSPNLPLE-----EKTVRSTRLLERRSKKRRNPKVA--VHENHGSR 231

Query: 860  KANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQF 1039
            +A +Q KIN G+DP DPLRLFL G ETR+LLTAKEE EL VQI+ L +LEEVK RLQS  
Sbjct: 232  RAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHL 291

Query: 1040 NREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLM 1219
             REPT+VEWAEA G+SC +LQS LH G RSR+K+  AN R+VVH+AKQYQG+GLNLQDL+
Sbjct: 292  KREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLL 351

Query: 1220 QEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKN 1399
            QEGSMGLM S+EKFKP AGCRF++Y+YWWIRQ++RKAIFQ+SRTIRLPEN+YSLL +VK 
Sbjct: 352  QEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKE 411

Query: 1400 AKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITAD 1576
            AK L IQEGHH PT EE+A+RVGIT EKL+ LL  TR+PLSMQQPVWAD +TTFQE+TAD
Sbjct: 412  AKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTAD 471

Query: 1577 TGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFGITKE 1756
            TGIEIP++ V K+ MR+H+ NLL VL PKERRIIRLR+GI DG P++LS+IG VFG +KE
Sbjct: 472  TGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKE 531

Query: 1757 RVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            RVRQLE RAL KL++CLS+ GL +Y +LL+
Sbjct: 532  RVRQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  555 bits (1429), Expect = e-155
 Identities = 305/577 (52%), Positives = 389/577 (67%), Gaps = 10/577 (1%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTP-----LSVTMLHEQTISSAKPFSTTSTTWHFPASA 310
            ME+GR+ L S S FP    LR+  P      SV MLHEQ + +      TS   HFP S 
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 311  LLQEQHVEFRPLL-LMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYAS 487
            LLQEQ  EF+PLL ++ +DK  E  LDR + + GA             + +  +  L   
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNH 120

Query: 488  DLRSLFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEES 667
            D+  +F SL T  KP +   ++S+   ++   +VEP +V                  E+S
Sbjct: 121  DILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDS 180

Query: 668  NVSIADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXX---PKAKAIV 838
                AD ++         G TSLA  + +E+E  V+S                PK+K I 
Sbjct: 181  QSMGADFDDL--------GYTSLANWI-VEEEKTVRSTRILERRRKRIKTRKVPKSKVIG 231

Query: 839  HDAPSLRKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVK 1018
            H++ S   ++++ KI+ GF+PNDPLRLFL G ETRQLLTAKEE EL  +++ L KLEEVK
Sbjct: 232  HESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVK 291

Query: 1019 VRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKG 1198
             RLQ+QF REPTL+EWAEA G+SC IL+S L  G  SREK+  AN R+VVH+AKQYQG+G
Sbjct: 292  SRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRG 351

Query: 1199 LNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYS 1378
            L LQDLMQEGSMGLMKS+EKFKPQAGCRF+TY+YWWIRQ++RKAIFQ+SRTIRLPENVYS
Sbjct: 352  LGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYS 411

Query: 1379 LLRQVKNAKNLCIQEG-HHPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTT 1555
            LL +V  AK  CIQEG H+P  EELA+RVGIT EKLE LLY+TR+PLSMQQPVWAD +TT
Sbjct: 412  LLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTT 471

Query: 1556 FQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGS 1735
            FQE+TADTG+EIP++ V K+ MR+H+ +LL +L  +ER IIRLRYGIEDG+ +SLS+IG 
Sbjct: 472  FQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGG 531

Query: 1736 VFGITKERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            +FG++KERVRQLE+RA  KLR+ L ++GLGAY  LL+
Sbjct: 532  MFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  551 bits (1420), Expect = e-154
 Identities = 307/580 (52%), Positives = 384/580 (66%), Gaps = 13/580 (2%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTP----------LSVTMLHEQTISSAKPFSTTSTTWH 295
            ME+G  +L S   FP +   RNS+           L V MLH+Q   +     TT     
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTTIAR-K 59

Query: 296  FPASALLQEQHVEFRPL-LLMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQ 472
            FP S LLQEQ  E+RP    + D++  +  L++R+ +             + YM +FE+Q
Sbjct: 60   FPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQ 119

Query: 473  LLYASDLRSLFPSLCTREK-PVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXX 649
            LL    L    PS  T EK P SS+IM+SI  D ++  +V+P DV               
Sbjct: 120  LLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAV 179

Query: 650  XXXEESNVSIADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAK 829
               E + +  AD E+     L    S +L +E     E  V+S             PK  
Sbjct: 180  SLYENAKLLGADLEDSPSPSLGAISSPNLPLE-----EKTVRSTRLLERRSKKRRNPKVA 234

Query: 830  AIVHDAPSLRKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLE 1009
              VH+    R+A +Q KIN G+DP DPLRLFL G ETR+LLTAKEE EL VQI+ L +LE
Sbjct: 235  --VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLE 292

Query: 1010 EVKVRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQ 1189
            EVK RLQS   REPT+VEWAEA G+SC +LQS LH G RSR+K+  AN R+VVH+AKQYQ
Sbjct: 293  EVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQ 352

Query: 1190 GKGLNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPEN 1369
            G+GLNLQDL+QEGSMGLM S+EKFKP AGCRF++Y+YWWIRQ++RKAIFQ+SRTIRLPEN
Sbjct: 353  GRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPEN 412

Query: 1370 VYSLLRQVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADS 1546
            +YSLL +VK AK L IQEGHH PT EE+A+RVGIT EKL+ LL  TR+PLSMQQPVWAD 
Sbjct: 413  MYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQ 472

Query: 1547 NTTFQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQ 1726
            +TTFQE+TADTGIEIP++ V K+ MR+H+ NLL VL PKERRIIRLR+GI DG P++LS+
Sbjct: 473  DTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSE 532

Query: 1727 IGSVFGITKERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            IG VFG +KERVRQLE RAL KL++CLS+ GL +Y +LL+
Sbjct: 533  IGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  529 bits (1363), Expect = e-147
 Identities = 289/578 (50%), Positives = 382/578 (66%), Gaps = 11/578 (1%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNS--------TPLSVTMLHEQTISSAKPFSTTSTTWHFP 301
            ME+GR LL SP  FP + ++++S        +  SV M +EQ+  +     T+S   HFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 302  ASALLQEQHVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQL 475
             S LLQEQ  E+RPLL M  +DK  +   D R  +  A           D  ++  E Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 476  LYASDLRSLFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXX 655
            L+  DL +L P +   E P  S  MQS++ DT+   + EP+D                  
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 656  XEESNVSIADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAI 835
             E   ++ A+  +          S + ++  PLE+   V+S              K K  
Sbjct: 181  AENPKLNGAEFTDI---------SLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVT 231

Query: 836  VHDAPSLRKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEV 1015
             H+  + RKA+++ K++ GFD NDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+ 
Sbjct: 232  NHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE 291

Query: 1016 KVRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGK 1195
            K +LQSQF REPTL+EWA+A G+SC  L+S LH G  SREK+  AN RLVVHVAKQYQG+
Sbjct: 292  KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351

Query: 1196 GLNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVY 1375
            G+ L DL+QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+Y
Sbjct: 352  GIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIY 411

Query: 1376 SLLRQVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNT 1552
            +LL +V  AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +T
Sbjct: 412  TLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471

Query: 1553 TFQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIG 1732
            TFQEITADTG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++G
Sbjct: 472  TFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVG 531

Query: 1733 SVFGITKERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            ++FG++KERVRQLE+RAL +L++ L  +    YA+LLI
Sbjct: 532  NIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  528 bits (1361), Expect = e-147
 Identities = 285/570 (50%), Positives = 377/570 (66%), Gaps = 3/570 (0%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQ 325
            ME+GR LL SP  FP + ++++S   S +     +  +     T+S   HFP S LLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 326  HVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQLLYASDLRS 499
              E+RPLL M  +DK  +   D R  +  A           D  ++  E Q L+  DL +
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 500  LFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 679
            L P +   E P  S  MQS++ DT+   + EP+D                   E   ++ 
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 180

Query: 680  ADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLR 859
            A+  +          S + ++  PLE+   V+S              K K   H+  + R
Sbjct: 181  AEFTDI---------SLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNSR 231

Query: 860  KANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQF 1039
            KA+++ K++ GFD NDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+ K +LQSQF
Sbjct: 232  KASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 291

Query: 1040 NREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLM 1219
             REPTL+EWA+A G+SC  L+S LH G  SREK+  AN RLVVHVAKQYQG+G+ L DL+
Sbjct: 292  GREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLL 351

Query: 1220 QEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKN 1399
            QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL +V  
Sbjct: 352  QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLE 411

Query: 1400 AKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITAD 1576
            AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +TTFQEITAD
Sbjct: 412  AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITAD 471

Query: 1577 TGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFGITKE 1756
            TG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++G++FG++KE
Sbjct: 472  TGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKE 531

Query: 1757 RVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            RVRQLE+RAL +L++ L  +    YA+LLI
Sbjct: 532  RVRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  528 bits (1360), Expect = e-147
 Identities = 289/579 (49%), Positives = 381/579 (65%), Gaps = 12/579 (2%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTPLS---------VTMLHEQTISSAKPFSTTSTTWHF 298
            ME+GR LL SP  FP + ++++S   S         V M +EQ+  +     T+S   HF
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 299  PASALLQEQHVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQ 472
            P S LLQEQ  E+RPLL M  +DK  +   D R  +  A           D  ++  E Q
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQ 120

Query: 473  LLYASDLRSLFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXX 652
             L+  DL +L P +   E P  S  MQS++ DT+   + EP+D                 
Sbjct: 121  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAAS 180

Query: 653  XXEESNVSIADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKA 832
              E   ++ A+  +          S + ++  PLE+   V+S              K K 
Sbjct: 181  LAENPKLNGAEFTDI---------SLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKV 231

Query: 833  IVHDAPSLRKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEE 1012
              H+  + RKA+++ K++ GFD NDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+
Sbjct: 232  TNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 291

Query: 1013 VKVRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQG 1192
             K +LQSQF REPTL+EWA+A G+SC  L+S LH G  SREK+  AN RLVVHVAKQYQG
Sbjct: 292  EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 351

Query: 1193 KGLNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENV 1372
            +G+ L DL+QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+
Sbjct: 352  RGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENI 411

Query: 1373 YSLLRQVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSN 1549
            Y+LL +V  AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +
Sbjct: 412  YTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 471

Query: 1550 TTFQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQI 1729
            TTFQEITADTG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++
Sbjct: 472  TTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEV 531

Query: 1730 GSVFGITKERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            G++FG++KERVRQLE+RAL +L++ L  +    YA+LLI
Sbjct: 532  GNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  522 bits (1345), Expect = e-145
 Identities = 281/575 (48%), Positives = 385/575 (66%), Gaps = 8/575 (1%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNS----TPLSVTMLHEQTISSAKPFSTTSTTWHFPASAL 313
            ME+ R LL  P  F  + QL++S    +  SV M HEQ   +A     TS   HFP S L
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 314  LQEQHVEFRPLLLM---SDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYA 484
            LQEQ  ++RPL ++    +DKA     D+++ ++GA             +  FE++LL  
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQLG-FEKKLLQW 119

Query: 485  SDLRSLFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEE 664
             DL  L   L + E P S++ MQS+A DT  + +VEP ++                  E+
Sbjct: 120  PDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSED 179

Query: 665  SNVSIADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHD 844
              + + DS   L   L  + S +L +E   ++E+    +             + K  + +
Sbjct: 180  LKLDLDDS---LSNSLGSANSCTLPVE---KEEVVTVRSTRRLERQSKRRRVQPKVTIRE 233

Query: 845  APSLRKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVR 1024
              S R+ +++ K++ GFDPNDPLRLFL G ET+QLLTAKEE EL  Q++ L +LE+VK +
Sbjct: 234  TYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSK 293

Query: 1025 LQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLN 1204
            LQSQF REPTLVEWAEA G+ C  LQ+ LH G  SR+K+  AN R+VVH+AKQYQ +GL+
Sbjct: 294  LQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLS 353

Query: 1205 LQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLL 1384
            LQDL+QEGSMGLMKS+E+FKPQ GCRF+TY+YWWIRQ+IRK+I Q+SRT+RLPENV++LL
Sbjct: 354  LQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLL 413

Query: 1385 RQVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQ 1561
             +V +AK   I+EG+H P+ EELA+RVGIT EKL+ LL++TR+PLSMQQ VW D + TFQ
Sbjct: 414  SKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQ 473

Query: 1562 EITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVF 1741
            E+T DTGIEIP++ V K+ MR+H+ NLL VL P+ER II+LR+GIE+ +  SLS+IG++F
Sbjct: 474  EVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMF 533

Query: 1742 GITKERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            G++KERVRQLE+RAL KL++CL+  GLGAY +LL+
Sbjct: 534  GLSKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  520 bits (1340), Expect = e-145
 Identities = 296/570 (51%), Positives = 375/570 (65%), Gaps = 4/570 (0%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQ 325
            ME+GR LL S   FP +  L+NS   SV +L EQ   +     TTST  HFP S LLQEQ
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQ 60

Query: 326  HVEFRPLL-LMSDDKALETMLDRRKTKDG-AXXXXXXXXXXDSYMKHFEQQLLYASDLRS 499
              EFRPL  +  +D+A +  LDRRKT+ G +          D  +++FE QL +     +
Sbjct: 61   RDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWN 120

Query: 500  LFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 679
            L                      TD L +VEP +V                   +    +
Sbjct: 121  L----------------------TDKLIDVEPTNVINLAKRALSA--------SKHAAFL 150

Query: 680  ADSEEFLEEFLRGSGSTSLAIEVPLEKEIK-VKSNXXXXXXXXXXXXPKAKAIVHDAPSL 856
            AD+   L+  L  + S+S ++E     E+K V+S             PK K ++ +    
Sbjct: 151  ADNNTDLDN-LASTSSSSFSLE-----EVKIVRSRRHLARQSLNRRAPKTKDLIFETYDS 204

Query: 857  RKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQ 1036
            + A++Q +++ GFDPNDPLRLFL G ET+QLLTAKEE EL  QI+ L  LE VK RL+SQ
Sbjct: 205  KSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQ 264

Query: 1037 FNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDL 1216
            F REPTLVEWA+A G+SC +L+  LH G RSREK+  AN R+VVH+AK+YQ +GL LQDL
Sbjct: 265  FGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDL 324

Query: 1217 MQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVK 1396
            +QEG++GLMKSIEKFKPQAGCRF+TY+YWWIRQ+I KAIFQ+SRTIRLPENVY LL +V 
Sbjct: 325  LQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVM 384

Query: 1397 NAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITA 1573
             AK   IQEG+H PT EE+A+RVGI  +KLE LL  TR PLSMQQ VW+D NTTFQEITA
Sbjct: 385  EAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITA 444

Query: 1574 DTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFGITK 1753
            DT IEIP++ V K+ MR+HI  LL +L  KERRIIRLR+GIEDG+ KSLS+IG+VFG++K
Sbjct: 445  DTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSK 504

Query: 1754 ERVRQLENRALDKLRKCLSTEGLGAYAELL 1843
            ERVRQLE+RAL KL++C+ + GL AYA+LL
Sbjct: 505  ERVRQLESRALYKLKQCVGSHGLDAYADLL 534


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  515 bits (1327), Expect = e-143
 Identities = 285/578 (49%), Positives = 377/578 (65%), Gaps = 11/578 (1%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNS--------TPLSVTMLHEQTISSAKPFSTTSTTWHFP 301
            ME+GR LL SP  FP + ++++S        +  SV M +EQ+  +     T+S   HFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 302  ASALLQEQHVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQL 475
             S LLQEQ  E+RPLL M  +DK  +   D R  +  A           D  ++  E Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 476  LYASDLRSLFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXX 655
            L+  DL +L P +   E P  S  MQS++ DT+   + EP+D                  
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL 180

Query: 656  XEESNVSIADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAI 835
             E   ++ A+  +          S + ++  PLE+   V+S              K K  
Sbjct: 181  AENPKLNGAEFTDI---------SLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVT 231

Query: 836  VHDAPSLRKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEV 1015
             H+  + RKA+++ K++ GFDPNDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+ 
Sbjct: 232  NHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE 291

Query: 1016 KVRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGK 1195
            K +LQSQF REPTL+       +SC  L+S LH G  SREK+  AN RLVVHVAKQYQG+
Sbjct: 292  KSKLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR 351

Query: 1196 GLNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVY 1375
            G+ L DL+QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+Y
Sbjct: 352  GIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIY 411

Query: 1376 SLLRQVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNT 1552
            +LL +V  AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +T
Sbjct: 412  TLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471

Query: 1553 TFQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIG 1732
            TFQEITADTG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++G
Sbjct: 472  TFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVG 531

Query: 1733 SVFGITKERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            ++FG++KERVRQLE+RAL +L++ L  +    YA+LLI
Sbjct: 532  NIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  515 bits (1326), Expect = e-143
 Identities = 293/577 (50%), Positives = 371/577 (64%), Gaps = 10/577 (1%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTPLS-------VTMLHEQTISSAKPFSTTSTTWHFPA 304
            ME+ R  L SP  FP +   +NS   S       V MLHEQ + +     TTS   +FP 
Sbjct: 1    METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFPT 60

Query: 305  SALLQEQHVEFRPLL-LMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLY 481
            S LLQEQ  EFRPLL +  +DK  +  +D ++   G           +        QL+ 
Sbjct: 61   SVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSDQ-------EGICSDVLDQLIL 113

Query: 482  ASDLRSLFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXE 661
             S+L               S  MQSI  +TD L  VEP +V                  +
Sbjct: 114  HSNLSW-------------SLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQ 160

Query: 662  ESNVSIADSEEFLEEFLRGSGSTSLAIEVPLEKEIK-VKSNXXXXXXXXXXXXPKAKAIV 838
            +     A+ ++ +   L  +  ++ ++E     E+K V+S              K K I 
Sbjct: 161  KC----ANLDDTVSTGLEPTDLSNFSLE-----EVKTVRSTRRLERQSKNRRVTKTKEIF 211

Query: 839  HDAPSLRKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVK 1018
            H+  S R+A +Q KIN GFDP DPLRLFL G ET+QLLTAKEE EL  Q++ L  LE VK
Sbjct: 212  HEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVK 271

Query: 1019 VRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKG 1198
             + + QF R+PTLVEWA+A G+S  ++QS LH G RSREK+  AN R+VVH+AKQYQG+G
Sbjct: 272  EKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRG 331

Query: 1199 LNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYS 1378
            L+LQDL+QEGSMGLMKSIEKFKPQ GCRF+TY+YWWIRQ++RKAIFQ+SRTIRLPENVY 
Sbjct: 332  LSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYH 391

Query: 1379 LLRQVKNAKNLCIQEG-HHPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTT 1555
             L +V  AK   I EG H+PT EELAKR+GITT +LE LLY  R+PLSMQQ VWAD  TT
Sbjct: 392  TLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETT 451

Query: 1556 FQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGS 1735
            FQEITAD  +EIPEL V K+ MR+H+ +LL +L P+ER+IIRLRYGIEDG+ KSLS+IGS
Sbjct: 452  FQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGS 511

Query: 1736 VFGITKERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            VFG++KERVRQLE+RAL KL++CL++ GL AYA+LL+
Sbjct: 512  VFGLSKERVRQLESRALYKLKQCLASHGLEAYADLLV 548


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  514 bits (1325), Expect = e-143
 Identities = 281/570 (49%), Positives = 372/570 (65%), Gaps = 3/570 (0%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQ 325
            ME+GR LL SP  FP + ++++S   S +     +  +     T+S   HFP S LLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 326  HVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQLLYASDLRS 499
              E+RPLL M  +DK  +   D R  +  A           D  ++  E Q L+  DL +
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 500  LFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 679
            L P +   E P  S  MQS++ DT+   + EP+D                   E   ++ 
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 180

Query: 680  ADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLR 859
            A+  +          S + ++  PLE+   V+S              K K   H+  + R
Sbjct: 181  AEFTDI---------SLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSR 231

Query: 860  KANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQF 1039
            KA+++ K++ GFDPNDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+ K +LQSQF
Sbjct: 232  KASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 291

Query: 1040 NREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLM 1219
             REPTL+       +SC  L+S LH G  SREK+  AN RLVVHVAKQYQG+G+ L DL+
Sbjct: 292  GREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLL 351

Query: 1220 QEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKN 1399
            QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL +V  
Sbjct: 352  QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLE 411

Query: 1400 AKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITAD 1576
            AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +TTFQEITAD
Sbjct: 412  AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITAD 471

Query: 1577 TGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFGITKE 1756
            TG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++G++FG++KE
Sbjct: 472  TGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKE 531

Query: 1757 RVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            RVRQLE+RAL +L++ L  +    YA+LLI
Sbjct: 532  RVRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  514 bits (1323), Expect = e-143
 Identities = 282/570 (49%), Positives = 374/570 (65%), Gaps = 3/570 (0%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQ 325
            ME+GR LL SP  FP + ++++S   S +     +++S     T+S   HFP S LLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVASVP---TSSVARHFPTSVLLQEQ 57

Query: 326  HVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQLLYASDLRS 499
              E+RPLL M  +DK  +   D R  +  A           D  ++  E Q L+  DL +
Sbjct: 58   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 117

Query: 500  LFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 679
            L P +   E P  S  MQS++ DT+   + EP+D                   E   ++ 
Sbjct: 118  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASLAENPKLNG 177

Query: 680  ADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLR 859
            A+  +          S + ++  PLE+   V+S              K K   H+  + R
Sbjct: 178  AEFTDI---------SLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNSR 228

Query: 860  KANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQF 1039
            KA+++ K++ GFDPNDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+ K +LQSQF
Sbjct: 229  KASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 288

Query: 1040 NREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLM 1219
             REPTL+       +SC  L+S LH G  SREK+  AN RLVVHVAKQYQG+G+ L DL+
Sbjct: 289  GREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDLL 348

Query: 1220 QEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKN 1399
            QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL +V  
Sbjct: 349  QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLE 408

Query: 1400 AKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITAD 1576
            AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +TTFQEITAD
Sbjct: 409  AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITAD 468

Query: 1577 TGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFGITKE 1756
            TG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++G++FG++KE
Sbjct: 469  TGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKE 528

Query: 1757 RVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            RVRQLE+RAL +L++ L  +    YA+LLI
Sbjct: 529  RVRQLESRALYRLKQSLGGKASYGYADLLI 558


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  497 bits (1279), Expect = e-138
 Identities = 280/574 (48%), Positives = 364/574 (63%), Gaps = 7/574 (1%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTP-----LSVTMLHEQTISSAKPFSTTSTTWHFPASA 310
            ME+GR+ L S S FP   QLR+  P      SV MLHEQ   +     T+  T HFP S 
Sbjct: 1    MEAGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSV 60

Query: 311  LLQEQHVEFRPLL-LMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYAS 487
            LLQEQ  EF+PLL +  ++KA +  LDR + ++               +K F Q      
Sbjct: 61   LLQEQRDEFKPLLHIFKEEKASQATLDRIQIENTTAEEDFNIDDFYKLVKDFRQL----- 115

Query: 488  DLRSLFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEES 667
                + PS      P  S +  +   +     +VEP DV                     
Sbjct: 116  ---HVTPSQIGENSPTGSALESNTTANVHM--DVEPSDVLTLAKHALSASLEA------- 163

Query: 668  NVSIADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDA 847
              S+A++ + +   L  S S  L  E    +  ++                K     ++ 
Sbjct: 164  -ASLAETSKSISAGLNESTSLGLGWEEETVRSTQLLERRRKRLKKRNLLNSKVPN--YEN 220

Query: 848  PSLRKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRL 1027
             S   ++++ K   G +PNDPLRLFL G ETRQLLT KEE EL  +++ + KLE VK RL
Sbjct: 221  SSSNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRL 280

Query: 1028 QSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNL 1207
            QSQF REPTL+EWAEA G+SC +LQS L  G  SREK+  +N R+VVH+AKQYQG+GL L
Sbjct: 281  QSQFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGL 340

Query: 1208 QDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLR 1387
            QDL+QEGSMGLMKS+EKFKPQAGCRF+TY+YWW+RQ+IRKAIFQ+SRTIRLPENVY+LL 
Sbjct: 341  QDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYTLLG 400

Query: 1388 QVKNAKNLCIQEGH-HPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQE 1564
            +V  AK   IQEG+ +P+ EELA+RVG++ EKL  LLY TR+P+SMQQ VWAD +TTFQE
Sbjct: 401  KVLEAKKSYIQEGNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDTTFQE 460

Query: 1565 ITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFG 1744
            +TADTGIEIP+L V K+ MR+H+ NLL  L  +ER+IIRLRYGIEDG+ +SL++IG +FG
Sbjct: 461  VTADTGIEIPDLSVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIEDGKQRSLTEIGEIFG 520

Query: 1745 ITKERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            ++KERVRQLE+RA  KL++ L ++GLGAYA LL+
Sbjct: 521  LSKERVRQLESRAFLKLKESLGSQGLGAYAPLLV 554


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 554

 Score =  495 bits (1275), Expect = e-137
 Identities = 278/562 (49%), Positives = 368/562 (65%), Gaps = 7/562 (1%)
 Frame = +2

Query: 182  LFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQHVEFRPLLLMSD 361
            +F       +S+  SVTMLHEQ   +   +S++S   HFP S LLQEQ  E++P L + +
Sbjct: 1    MFSSSPPFPSSSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLHVHN 60

Query: 362  DKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLRSLFPSLCTREKPVSS 541
                ET L+ R+    +          D  +  F QQL   S L++L     TR    SS
Sbjct: 61   K---ETTLNTRQMDMTSVHEKGNTSNADQLVHDFVQQLHLRSHLQNLLTCSPTRGIAASS 117

Query: 542  TIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSIADSEEFLEEFLRGS 721
             I+Q +  D++  A+  P +                    E  +   D ++ L     G 
Sbjct: 118  -ILQPVDIDSEWPADGVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDDDPLPS---GL 173

Query: 722  GSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLRKANIQ------SKI 883
             STSL  +  L+K   V+S              K+K +  ++   RK+++Q       K+
Sbjct: 174  ASTSLT-DSSLKKNKVVRSTRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRLRLEKKL 232

Query: 884  NVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQFNREPTLVE 1063
              G+DPNDPLRLFLSG E+RQLLT +EE +L  Q++ L++LEEVK+RLQ+Q  REPTL E
Sbjct: 233  KEGYDPNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTLAE 292

Query: 1064 WAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLMQEGSMGLM 1243
            WA+A G SC  LQ+ LH   RS+EK+  AN R+VVH+AK YQG+GL+LQDL QEGS GLM
Sbjct: 293  WADAVGHSCYALQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLM 352

Query: 1244 KSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNLCIQE 1423
            KSIEKFKP+AGCRF TY+YWWIR ++RKAIF +SRTIRLPEN+Y+LL +V  AK   IQE
Sbjct: 353  KSIEKFKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQE 412

Query: 1424 GH-HPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITADTGIEIPEL 1600
            G+ HPT EELA++VGIT EK+++LL+++R P+SMQQ VWAD +TTFQEITAD+ IEIP++
Sbjct: 413  GNLHPTKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDV 472

Query: 1601 HVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFGITKERVRQLENR 1780
             V+K+ MR H+HNLL +L PKER IIRLR+GIEDGE K+LS IG VFG+TKERVRQLE+R
Sbjct: 473  TVSKQLMRMHVHNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERVRQLESR 532

Query: 1781 ALDKLRKCLSTEGLGAYAELLI 1846
            AL KLR+CL ++GL AY +LL+
Sbjct: 533  ALLKLRQCLESQGLDAYTDLLV 554


>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  490 bits (1261), Expect = e-135
 Identities = 272/574 (47%), Positives = 364/574 (63%), Gaps = 7/574 (1%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRN--STPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQ 319
            ME+ R L+ SP  FP +  +RN  S+  SV +LHEQ   +    ST S   H   S L+Q
Sbjct: 1    METVRSLVSSPPQFPLRTHVRNCSSSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLIQ 60

Query: 320  EQHVEFRPLLLMSDDKALETMLDRRKT----KDGAXXXXXXXXXXDSYMKHFEQQLLYAS 487
            +Q  E RPLL + DD   +   DRR+        +          D Y    + QLL   
Sbjct: 61   DQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRRP 120

Query: 488  DLRSLFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEES 667
            +L  L+ SL  +E P  +T   S+    +++   E   V                   + 
Sbjct: 121  ELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSAC--------KE 172

Query: 668  NVSIADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDA 847
              SIA+     +     S ST   +  P+++ ++ K              PK +    + 
Sbjct: 173  AASIAEDARLYDN----SSSTRSLVGSPVQRIVRSKRRLERQAKRRA---PKPQLEDQEM 225

Query: 848  PSLRKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRL 1027
               RK     K + G+DPNDPLRLFL G ET QLL+AKEE +L  +I+ L KL+EV+ RL
Sbjct: 226  NHRRKLEPHKKSSEGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRL 285

Query: 1028 QSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNL 1207
            Q+QF+REPTLVEWA A G+S   LQ  ++ G  SREK+  ANFRLVV++AKQYQG+GLNL
Sbjct: 286  QTQFSREPTLVEWAAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNL 345

Query: 1208 QDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLR 1387
            QDL+Q GSMGLMKS+EKFKP  GCRF+TY+YWWIRQSIRK++FQ+SRTIRLPENVY+LL 
Sbjct: 346  QDLLQLGSMGLMKSVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLS 405

Query: 1388 QVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQE 1564
            +V  AK  CI++G+H PT E++A   G++ EKL+ LLY++R+PLSMQ+PVW D +TTFQE
Sbjct: 406  KVYEAKKTCIKQGNHQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQE 465

Query: 1565 ITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFG 1744
            ITADT +E P++  +K+ MR+H  NLL VL P+ER+IIRLR+GIEDGE KSLS IG+ FG
Sbjct: 466  ITADTAVEAPDVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGAGFG 525

Query: 1745 ITKERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            ++KER+RQ+E+RAL KL++CLS+ GL AYAE+L+
Sbjct: 526  LSKERIRQIESRALYKLKQCLSSHGLSAYAEMLV 559


>ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Glycine max]
          Length = 554

 Score =  487 bits (1254), Expect = e-135
 Identities = 277/562 (49%), Positives = 365/562 (64%), Gaps = 7/562 (1%)
 Frame = +2

Query: 182  LFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQHVEFRPLLLMSD 361
            +F       +S+  SVTMLHEQ   +   +S++S   HFP S LLQEQ  E++PLL + +
Sbjct: 1    MFSSSPPFPSSSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPLLHVHN 60

Query: 362  DKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLRSLFPSLCTREKPVSS 541
                ET L+ R+    +          D  +  F QQL   S L++L     TR    SS
Sbjct: 61   K---ETTLNTRQMDMTSVHEKGNMSNGDQLVHDFVQQLHLRSHLQNLLTCSPTRGIAASS 117

Query: 542  TIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSIADSEEFLEEFLRGS 721
             I+Q +  D++  A+  P +                    E  +   D ++ L     G 
Sbjct: 118  -ILQPVDIDSEWPADGLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDDDPLPF---GL 173

Query: 722  GSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLRKANIQ------SKI 883
             STSLA    L+K   V+S              K+K I  ++   RK+++Q       K+
Sbjct: 174  ASTSLA-NSSLKKNKVVRSTRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRLRLEKKL 232

Query: 884  NVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQFNREPTLVE 1063
              G+D NDPLRLFLSG E+RQLLT +EE  L  Q++ L++ EEVK+RLQSQ  REPTL E
Sbjct: 233  KEGYDQNDPLRLFLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTLAE 292

Query: 1064 WAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLMQEGSMGLM 1243
            WA+A G+SC  LQ+ LH   RS+EK+  AN R+VVH+AK YQG+GL+LQDL QEGS GLM
Sbjct: 293  WADAVGLSCYTLQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLM 352

Query: 1244 KSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNLCIQE 1423
            KSI+KFKP+AGCRF TY+YWWIR +IRKAIF +SRTIRLPEN+Y+LL ++  AK   IQE
Sbjct: 353  KSIQKFKPEAGCRFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQE 412

Query: 1424 GH-HPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITADTGIEIPEL 1600
            G+ HPT EELA+RVGIT EKL++LL+++R P+SMQQ +W D +TTFQEITAD+ IEIP +
Sbjct: 413  GNLHPTKEELARRVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGV 472

Query: 1601 HVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFGITKERVRQLENR 1780
             V+K+ MRRH+HNLL +L PKE+ IIRLR+GIEDG+ K+LS IG VFG+TKERVRQLE R
Sbjct: 473  TVSKQLMRRHVHNLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLECR 532

Query: 1781 ALDKLRKCLSTEGLGAYAELLI 1846
            AL KL++CL ++GL AY +LL+
Sbjct: 533  ALSKLKQCLESQGLDAYIDLLV 554


>ref|XP_007162766.1| hypothetical protein PHAVU_001G178600g [Phaseolus vulgaris]
            gi|561036230|gb|ESW34760.1| hypothetical protein
            PHAVU_001G178600g [Phaseolus vulgaris]
          Length = 550

 Score =  483 bits (1242), Expect = e-133
 Identities = 271/562 (48%), Positives = 364/562 (64%), Gaps = 7/562 (1%)
 Frame = +2

Query: 182  LFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQHVEFRPLLLMSD 361
            +F       +S+  SV MLHEQ   +   +S++ST  HFP S LLQEQ  E+RPLL +++
Sbjct: 1    MFSSSPPFPSSSSPSVMMLHEQAAPAVASWSSSSTARHFPTSVLLQEQREEYRPLLHVNN 60

Query: 362  DKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLRSLFPSLCTREKPVSS 541
             +A    L+ R+    +          D  +  F  QL   S L++L     TR    S 
Sbjct: 61   KEAT---LNTRQMDMTSVQEKSNTGNPDPLVHDFVHQLHLRSHLQNLLTCYPTRGIAASL 117

Query: 542  TIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSIADSEEFLEEFLRGS 721
            T+ Q +  D++      P D                     S+V + D +  ++    G 
Sbjct: 118  TL-QPVDNDSE-----RPADGLPRNAVSLAQQALSASKQAASSVEVDDDD--VDPLSFGL 169

Query: 722  GSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLRKANIQ------SKI 883
             STSL ++  L++   V+S              K+K +  ++   RK+ +Q       K+
Sbjct: 170  ASTSLGVD-SLKRNKIVRSTRIIERRSKQRKTSKSKLLDEESFLERKSYVQRKLRLEKKL 228

Query: 884  NVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQFNREPTLVE 1063
            N GFD NDPLR+FLS  E+RQLLT +EE +L  Q++ L++LEEVK+RLQSQ  REPTL E
Sbjct: 229  NEGFDQNDPLRMFLSDPESRQLLTREEESQLITQLQDLSRLEEVKIRLQSQIRREPTLAE 288

Query: 1064 WAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLMQEGSMGLM 1243
            WA+  G+SC  LQ+ LH   RS+EK+  AN R+VVH+AK YQG+GLNLQDL+QEGS GL+
Sbjct: 289  WADVLGLSCCALQTQLHCANRSKEKLFHANMRMVVHIAKYYQGRGLNLQDLLQEGSTGLL 348

Query: 1244 KSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNLCIQE 1423
            KSI+KFKP  GCRF TY+YWWIR SIR+AIF +SRTIR+PEN+Y LL +V  AK   IQE
Sbjct: 349  KSIDKFKPGGGCRFGTYAYWWIRHSIRRAIFLHSRTIRVPENLYRLLGKVLEAKKSFIQE 408

Query: 1424 GH-HPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITADTGIEIPEL 1600
            G+ HP+ EELA+RVGIT +KLE+LL+++R P+SMQQ VWAD  TTFQEITAD+ IEIP++
Sbjct: 409  GNIHPSKEELARRVGITVDKLENLLFTSRNPISMQQSVWADQETTFQEITADSAIEIPDV 468

Query: 1601 HVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFGITKERVRQLENR 1780
             V+K+ MRRH+HNLL +L PKE+ I+RLR+GIEDG+ K+LS IG VFG+TKERVRQLE+R
Sbjct: 469  CVSKQLMRRHVHNLLNMLSPKEKSILRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLESR 528

Query: 1781 ALDKLRKCLSTEGLGAYAELLI 1846
            AL KL+ CL ++GL +Y +LLI
Sbjct: 529  ALSKLKDCLESQGLDSYIDLLI 550


>ref|XP_006410876.1| hypothetical protein EUTSA_v10016472mg [Eutrema salsugineum]
            gi|312282671|dbj|BAJ34201.1| unnamed protein product
            [Thellungiella halophila] gi|557112045|gb|ESQ52329.1|
            hypothetical protein EUTSA_v10016472mg [Eutrema
            salsugineum]
          Length = 547

 Score =  480 bits (1235), Expect = e-132
 Identities = 271/572 (47%), Positives = 373/572 (65%), Gaps = 5/572 (0%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRN--STPLSVTMLHEQTISSA-KPFSTTSTTWHFPASALL 316
            ME+ R L+ S   F  K  L++  S+P SV MLHEQT +        TS + HFPAS L 
Sbjct: 1    MEATRNLVSSSPSFQTKTHLKSGFSSPSSVVMLHEQTATPVVNSRHLTSLSRHFPASVLS 60

Query: 317  QEQHVEFRPLL-LMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDL 493
            QE   E +PL   + +D+  +  L+RR+  +                + FEQQLL+++ L
Sbjct: 61   QELREESKPLSHALREDRTSQLTLERRQFDELVSSRED---------EKFEQQLLHSAGL 111

Query: 494  RSLFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNV 673
             +L  S  T EK + + +  S   D   L  +    +                  +++ +
Sbjct: 112  WNLLISPLTTEKQLPAVVSPSADADLCDLVALAQKALSAS---------------KQAAL 156

Query: 674  SIADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPS 853
             + +SE    +  R S STS ++ +P EK   V+S             PK+  +  +   
Sbjct: 157  LVENSEADPPDNPRDSLSTSSSMSLP-EKGTIVRSKRQLERRAKNRRAPKSNNMDSEGYV 215

Query: 854  LRKANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQS 1033
             +K N + K+  GFD +D L+LFL G ET+QLLTAKEE EL   I+ L KLE+VK +L+S
Sbjct: 216  PQKINAKKKMKQGFDTDDALQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVKTKLES 275

Query: 1034 QFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQD 1213
            Q   EPT+ EWAEA G+S  +L+S +H G+ SREK+  AN RLVVH+AKQYQ +GLN QD
Sbjct: 276  QNGCEPTIGEWAEAMGLSSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 335

Query: 1214 LMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQV 1393
            L+QEGSMGLMKS+EKFKPQ+GCRF+TY+YWWIRQSIRK+IFQNSRTIRLPENVY LL +V
Sbjct: 336  LLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKV 395

Query: 1394 KNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEIT 1570
              A+  CIQ+G++ P+ E+LA  VG++TEKL+ LLY+TR PLSMQQP+W+D +TTFQE+T
Sbjct: 396  SEARKTCIQDGNYRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVT 455

Query: 1571 ADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFGIT 1750
             D+GIE P + V K+ MR H+ NLL VL PKE+RII+LR+GI+ G+ +SLS+IG ++G++
Sbjct: 456  PDSGIETPSMSVGKQLMRNHVRNLLNVLSPKEKRIIKLRFGIDGGKQRSLSEIGEIYGLS 515

Query: 1751 KERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            KERVRQLE+RAL +L++ +S+ GL AYA+LL+
Sbjct: 516  KERVRQLESRALYRLKQNMSSHGLNAYADLLV 547


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  478 bits (1230), Expect = e-132
 Identities = 267/570 (46%), Positives = 357/570 (62%), Gaps = 3/570 (0%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSA-KPFSTTSTTWHFPASALLQE 322
            ME GR LL  P  FP +  LRN  P S +      +++       TS    F  S LLQE
Sbjct: 1    MEVGRNLLSPPPSFPSRTHLRNYLPSSSSASTSANVATGITSMPATSIAQPFSTSVLLQE 60

Query: 323  QHVEFRPLLLMS-DDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLRS 499
            Q  EF+PLL ++ +DK  + +L+RR+   GA          + ++  FE+  ++      
Sbjct: 61   QRDEFKPLLRVNKEDKTSQGVLNRRQNDSGALVHEDTLEDYNQFVWEFERPSVHWPGFWH 120

Query: 500  LFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 679
            + PSL T+ K  SS  M++         +VE  D                   EES +  
Sbjct: 121  VLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEESKLVG 180

Query: 680  ADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLR 859
             DS++ L     G G  ++     LE+  K +              P++  + ++ P  R
Sbjct: 181  TDSDDMLSVSFLGKGDKTVRSTRLLERRSKRRK------------VPESSVLFYENPRNR 228

Query: 860  KANIQSKINVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQF 1039
             A+I+ +++ G + +DPLRLFL+G ETRQLLT +EE EL  Q++ L KLE+VK RLQS+F
Sbjct: 229  AADIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSEF 288

Query: 1040 NREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLM 1219
             REPTLVEWAEA G+SC ILQS +  G  SREK+ CAN RLVVH+AKQYQG+G+ +QDLM
Sbjct: 289  GREPTLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDLM 348

Query: 1220 QEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKN 1399
            QEGSMGLMKS+EKFKPQ GCRF++Y+YWWIRQ+               ENVY+LL +V  
Sbjct: 349  QEGSMGLMKSVEKFKPQVGCRFASYAYWWIRQT---------------ENVYTLLGKVLE 393

Query: 1400 AKNLCIQEG-HHPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITAD 1576
            AK   IQEG H+P+ E+LA RVGIT EKL  LLY TR+PLSMQQPVWAD +TTFQE+TAD
Sbjct: 394  AKRSSIQEGNHNPSKEDLATRVGITVEKLNKLLYMTRIPLSMQQPVWADQSTTFQEVTAD 453

Query: 1577 TGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSVFGITKE 1756
            T IEIP++ V K+ MR+H+  LL  L  +ER+IIRLR+GIEDG  KSLS+IG ++G++KE
Sbjct: 454  TRIEIPDVSVAKQMMRQHVRGLLRSLNVRERQIIRLRFGIEDGNQKSLSEIGRMYGLSKE 513

Query: 1757 RVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            RVRQLE+RAL KL++CL ++ L AYA+L++
Sbjct: 514  RVRQLESRALYKLKQCLGSQDLEAYADLIV 543


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 575

 Score =  476 bits (1226), Expect = e-131
 Identities = 278/581 (47%), Positives = 360/581 (61%), Gaps = 14/581 (2%)
 Frame = +2

Query: 146  MESGRYLLHSPSLFPQKIQL------RNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPAS 307
            ME  R +  S   FP +          +S+  SV MLHEQ   +   +S+  +  +FPAS
Sbjct: 1    MEFARTMFCSSPPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPAS 60

Query: 308  ALLQEQHVEFRPLLLMS-DDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYA 484
             LL EQ  E+RPLL MS +DK  + ML  R+               D  +  F + L + 
Sbjct: 61   VLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDTVTVHEENNTENADQVVLDFRKHLHHW 120

Query: 485  SDLRSLFPSLCTREKPVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEE 664
             +L+ L  S    E   SST+ + ++ D +   N   ++                   E+
Sbjct: 121  PNLQYLLTSSQIGEVAASSTL-EHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVED 179

Query: 665  SNVSIADSEEFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHD 844
                 AD +        G  STSLA +  + +   V+S             PK+K I  +
Sbjct: 180  LKSIKADDDSIPF----GLASTSLA-DPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDE 234

Query: 845  APSLRKANIQSKI------NVGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKL 1006
                RK + Q K+      N   D +DPLRLFL G ET+QLLT ++E +L  QI+ L +L
Sbjct: 235  TYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRL 294

Query: 1007 EEVKVRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQY 1186
            EEVK  LQSQF REPT+ EWAE AG++C +LQS LH G RSREK+  AN R+VVHVAK Y
Sbjct: 295  EEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSY 354

Query: 1187 QGKGLNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPE 1366
            QG+GL+LQDL+QEGSMGLMKS+EKF P AG RF  Y++WWIRQ+IRKA+F++SRTIRLPE
Sbjct: 355  QGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPE 414

Query: 1367 NVYSLLRQVKNAKNLCIQEGH-HPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWAD 1543
             V+ LL +V  AK L IQEG+ HPT EELA+RVG+T EK++ LL+S R+P+SMQQ VWAD
Sbjct: 415  KVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWAD 474

Query: 1544 SNTTFQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLS 1723
             NTTFQEITAD  +E  ++ V K+ MRRH+ N+L VL PKERRIIRLRYG EDGE KSLS
Sbjct: 475  QNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLS 534

Query: 1724 QIGSVFGITKERVRQLENRALDKLRKCLSTEGLGAYAELLI 1846
            +IG +FG++KERVRQLE RAL KL+KCL  +GL AY +LL+
Sbjct: 535  EIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 575