BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00004430
         (1781 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   620   e-175
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              617   e-174
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   608   e-171
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   603   e-170
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac...   603   e-170
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-...   595   e-167
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]     585   e-164
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   582   e-163
ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A...   570   e-160
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   570   e-160
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich...   560   e-156
gb|EYU27177.1| hypothetical protein MIMGU_mgv1a003367mg [Mimulus...   559   e-156
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-...   559   e-156
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-...   558   e-156
emb|CAD20831.2| sigma factor [Spinacia oleracea]                      552   e-154
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   549   e-153
ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutr...   542   e-151
ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arab...   541   e-151
ref|XP_007203880.1| hypothetical protein PRUPE_ppa006657mg [Prun...   539   e-150
ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis tha...   539   e-150

>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  620 bits (1598), Expect = e-175
 Identities = 342/573 (59%), Positives = 401/573 (69%), Gaps = 7/573 (1%)
 Frame = -1

Query: 1700 MACLLPQFKCPPDNASTIHLKSY--CNNLRTRHLGCSRAQCILXXXXXXXXXXXXXMVVD 1527
            M+CLLPQFKCPPD  ST H K +  C + + R     R QC L              V+D
Sbjct: 1    MSCLLPQFKCPPDTFST-HPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTA-VLD 58

Query: 1526 VGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXX 1347
            + KL+LPSLE+H N +A+ R   Y+G +GPP +AN EATL  E LLT             
Sbjct: 59   IEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEA 118

Query: 1346 XXXXXXXXXXAQDAAMMISNGPFVMG-----NFTSKSGSTQLERMHISETERFGKMGHST 1182
                      A+DAA ++             +F S   ++Q  R+  +ETER G +G S 
Sbjct: 119  VALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDS- 177

Query: 1181 LNVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXX 1002
            +  E    + + +     +S++LEP  +E +L E + +  I V+S RQ            
Sbjct: 178  VGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAE 237

Query: 1001 XASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQXXX 822
             ASA ++SV SGS+SR+KR +LQ VDYSDPLRYLRG                 EGIQ   
Sbjct: 238  KASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLL 297

Query: 821  XXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAK 642
                       R GV+P FAQWAAAAGVDQK LR+R N+GI CKDKM+KSNIRLVISIAK
Sbjct: 298  KLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAK 357

Query: 641  NYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 462
            NYQGAGMN+QDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL
Sbjct: 358  NYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 417

Query: 461  PFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIG 282
            PFHMV+ATYRV+EA+KQLYSENGRHP+NEEVAEATGLSMKRL  VLLTPKAPRSLDQKIG
Sbjct: 418  PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIG 477

Query: 281  INQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKT 102
            INQNLKPS+VIADPDAETAE+LLIK+FM++DLEKVL+SL+PREKQV+RWR+GLEDGR KT
Sbjct: 478  INQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKT 537

Query: 101  LQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            LQEIGELMGVSRERIRQIESCAFRKLKNK+RTK
Sbjct: 538  LQEIGELMGVSRERIRQIESCAFRKLKNKRRTK 570


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  617 bits (1590), Expect = e-174
 Identities = 341/574 (59%), Positives = 400/574 (69%), Gaps = 8/574 (1%)
 Frame = -1

Query: 1700 MACLLPQFKCPPDNAST---IHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXMVV 1530
            M+CLLPQFKCPPD  ST   +H+ S     + R     R QC L              V+
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLHILS-----KNREAIYFRVQCALSTTSPPLSTSTTA-VL 54

Query: 1529 DVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXX 1350
            D+ KL+LPSLE+H N +A+ R   Y+G +GPP +AN EATL  E LLT            
Sbjct: 55   DIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAE 114

Query: 1349 XXXXXXXXXXXAQDAAMMISNGPFVMG-----NFTSKSGSTQLERMHISETERFGKMGHS 1185
                       A+DAA ++             +F S   ++Q  R+  +ETER G +G S
Sbjct: 115  AVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDS 174

Query: 1184 TLNVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXX 1005
             +  E    + + +     +S++LEP  +E +L E + +  I V+S RQ           
Sbjct: 175  -VGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAA 233

Query: 1004 XXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQXX 825
              ASA ++SV SGS+SR+KR +LQ VDYSDPLRYLRG                 EGIQ  
Sbjct: 234  EKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDL 293

Query: 824  XXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIA 645
                        R GV+P FAQWAAAAGVDQK LR+R N+GI CKDKM+KSNIRLVISIA
Sbjct: 294  LKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIA 353

Query: 644  KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 465
            KNYQGAGMN+QDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 354  KNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 413

Query: 464  LPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQKI 285
            LPFHMV+ATYRV+EA+KQLYSENGRHP+NEEVAEATGLSMKRL  VLLTPKAPRSLDQKI
Sbjct: 414  LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKI 473

Query: 284  GINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMK 105
            GINQNLKPS+VIADPDAETAE+LLIK+FM++DLEKVL+SL+PREKQV+RWR+GLEDGR K
Sbjct: 474  GINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTK 533

Query: 104  TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            TLQEIGELMGVSRERIRQIESCAFRKLKNK+RTK
Sbjct: 534  TLQEIGELMGVSRERIRQIESCAFRKLKNKRRTK 567


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  608 bits (1567), Expect = e-171
 Identities = 344/588 (58%), Positives = 402/588 (68%), Gaps = 11/588 (1%)
 Frame = -1

Query: 1733 TQTTYHFANRRMACLLPQFKCPPDNASTIHLKSYCNNL-------RTRHLGCSRAQCILX 1575
            TQ +    N+ M+CLLPQFKC PD  S IH ++  N+        +++   C R  C+L 
Sbjct: 13   TQISTSSFNKNMSCLLPQFKCQPDTFS-IHFRTLHNHQHHSSHPSKSKEPICFRTHCVLS 71

Query: 1574 XXXXXXXXXXXXMVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEA 1395
                         V+DV KL+LPSLEAH N +A++R   Y GA+GP  + N   +L  E 
Sbjct: 72   TTSPSTSTAMTT-VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATET 130

Query: 1394 LLTGXXXXXXXXXXXXXXXXXXXXXXAQDAAMMISNG----PFVMGNFTSKSGSTQLERM 1227
            L T                       A+DAA+M+++     P      +  + +      
Sbjct: 131  L-TSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWA 189

Query: 1226 HISETERFGKMGHSTLNVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKS 1047
             ++E ER   +G S + VE  P EE+      N S +LEP  +E KL E Q++  I V+S
Sbjct: 190  QLTERERASIIGDSVI-VEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRS 248

Query: 1046 GRQTXXXXXXXXXXXXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXX 867
             RQT            A+AN++SV SGS+SR+KR ++Q VDYSDPLRYLR          
Sbjct: 249  RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308

Query: 866  XXXXXXXXEGIQXXXXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKD 687
                     GIQ              RCG  P FAQWAAAAGVDQ+ LR+RLN+GILCKD
Sbjct: 309  ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368

Query: 686  KMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQ 507
            KM+ SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQ
Sbjct: 369  KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428

Query: 506  AVRKSLSDQSRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTV 327
            AVRKSLSDQSRTIRLPFHMV+ATYRV+EA+KQLYSENGRHP+NEEVAEATGLSMKRL  V
Sbjct: 429  AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 488

Query: 326  LLTPKAPRSLDQKIGINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQ 147
            LLTPKAPRSLDQK GINQNLKPS+VIADP+AETAEDLLIKKFMK+DLEKVLD+L+PRE+Q
Sbjct: 489  LLTPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQ 548

Query: 146  VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFRKLKNKKRTK
Sbjct: 549  VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 596


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  603 bits (1556), Expect = e-170
 Identities = 341/588 (57%), Positives = 402/588 (68%), Gaps = 11/588 (1%)
 Frame = -1

Query: 1733 TQTTYHFANRRMACLLPQFKCPPDNASTIHLKSYCNNL-------RTRHLGCSRAQCILX 1575
            TQ +    N+ M+CLLPQFKC PD  S IH ++  N+        +++   C R  C+L 
Sbjct: 13   TQISTSSFNKNMSCLLPQFKCQPDTFS-IHFRTLHNHQHHSSHPSKSKEPICFRTHCVLS 71

Query: 1574 XXXXXXXXXXXXMVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEA 1395
                         V+DV KL+LPSLEAH N +A++R   Y GA+GP  + N   +L  E 
Sbjct: 72   TTSPSTSTAMTT-VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATET 130

Query: 1394 LLTGXXXXXXXXXXXXXXXXXXXXXXAQDAAMMISNG----PFVMGNFTSKSGSTQLERM 1227
            L T                       A+DAA+M+++     P      +  + ++     
Sbjct: 131  L-TSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTSTSMWA 189

Query: 1226 HISETERFGKMGHSTLNVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKS 1047
             ++E ER   +G S + VE  P EE+      N S +LEP  +E KL E Q++  I V+S
Sbjct: 190  QLTERERASIIGDSVI-VEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRS 248

Query: 1046 GRQTXXXXXXXXXXXXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXX 867
             RQT            A+AN++SV SGS++R+KR ++Q VDYSDPLRYLR          
Sbjct: 249  RRQTERKARRTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308

Query: 866  XXXXXXXXEGIQXXXXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKD 687
                     GIQ              RCG  P FAQWAAAAGVDQ+ LR+RLN+GILCKD
Sbjct: 309  ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368

Query: 686  KMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQ 507
            KM+ SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQ
Sbjct: 369  KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428

Query: 506  AVRKSLSDQSRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTV 327
            AVRKSLSDQSRTIRLPFHMV+ATYRV+EA+KQLYSENGRHP+NEEVA+ATGLSMKRL  V
Sbjct: 429  AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAV 488

Query: 326  LLTPKAPRSLDQKIGINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQ 147
            LL PKAPRSLDQK GINQNLKPS+VIADP+AETAEDLLIKKFMK+DLEKVLD+L+PRE+Q
Sbjct: 489  LLAPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQ 548

Query: 146  VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFRKLKNKKRTK
Sbjct: 549  VVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 596


>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
            gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
            [Theobroma cacao]
          Length = 623

 Score =  603 bits (1555), Expect = e-170
 Identities = 355/622 (57%), Positives = 401/622 (64%), Gaps = 56/622 (9%)
 Frame = -1

Query: 1700 MACLLPQFKCPPDNAS----TIHLKSY-----------------CNNLRT---------- 1614
            M+CLLPQFKC PD  S    T H   +                 C NL            
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60

Query: 1613 ------RHLGCSRAQCILXXXXXXXXXXXXXMVVDVGKLQLPSLEAHPNCLASDRTLAYV 1452
                   H+ C R QC+L              V+DV KL+LPS EAHPN +A DR   Y+
Sbjct: 61   VLAKHKEHI-CFRTQCVLSTTSSSTSTTATA-VLDVEKLRLPSFEAHPNSVAVDRPWTYI 118

Query: 1451 GAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXXXXXXXXXXAQDAAMMISNG---- 1284
            GA GPP +A+  ATL  + LLT                       A+DAA+M  N     
Sbjct: 119  GATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAK 178

Query: 1283 -------PFVMGNFTSKSGSTQLERMHISETERFGKMGHSTLNVEMIPNEEHLMHFSHNN 1125
                    F   +FTSK           +E ER G +G S  + E    E+     S   
Sbjct: 179  TEMKSGVSFATDSFTSKWAL-------FTEAERAGIIGDSPTD-ESEMEEDDSEQNSTTE 230

Query: 1124 SENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXXXASANLISVNSGSSSRKKR 945
            S+ LEP ++E +  E QL+  I V+S RQT            A+AN++SV SGS++RK+R
Sbjct: 231  SDELEPTNEELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRR 290

Query: 944  AALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQXXXXXXXXXXXXXXRCGVQPIF 765
             ALQ VDYSDPLRYLRG                 EGIQ              RCG QP F
Sbjct: 291  GALQDVDYSDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTF 350

Query: 764  AQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 585
            AQWAAAAGVDQK LR RLN+G+ CKDKM+KSNIRLVISIAKNYQGAGMNLQDLVQEGCRG
Sbjct: 351  AQWAAAAGVDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 410

Query: 584  LVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREAKKQLY 405
            LV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATYRV+EA+KQLY
Sbjct: 411  LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 470

Query: 404  SENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPS--------DVI 249
            SENGRHPDNEEVAEATGLSMKRLT VLLTPKAPRSLDQKIGINQNLKPS        +VI
Sbjct: 471  SENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVI 530

Query: 248  ADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGVS 69
            ADP+AETAED+LIK+FM++DLEKVLDSLS RE+QV+RWRFG+EDGRMKTLQEIGELMGVS
Sbjct: 531  ADPEAETAEDMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVS 590

Query: 68   RERIRQIESCAFRKLKNKKRTK 3
            RERIRQIESCAFRKLKNKKRTK
Sbjct: 591  RERIRQIESCAFRKLKNKKRTK 612


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
            subsp. vesca]
          Length = 616

 Score =  595 bits (1533), Expect = e-167
 Identities = 326/516 (63%), Positives = 373/516 (72%), Gaps = 5/516 (0%)
 Frame = -1

Query: 1535 VVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXX 1356
            ++D+ +  LPSL  + + L  +R   Y GAIGPP +AN  A L  E LLT          
Sbjct: 95   LLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTSEEAVIAAAA 154

Query: 1355 XXXXXXXXXXXXXAQDAAMMISNGPFVMGNFTSKSGSTQLERMHIS-----ETERFGKMG 1191
                         A+D A+++SN  +      S   S      HI+     ETE   ++G
Sbjct: 155  AEAVTLAKAALKVAKDVALLVSNNHYAKVE-NSSPVSCGTSAFHINWAQHLETEPTLRIG 213

Query: 1190 HSTLNVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXX 1011
             S  + E    E+H +  + N SEN+EP ++E +L + QL+  I  +S RQT        
Sbjct: 214  DSMAS-ETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTERKARRTR 272

Query: 1010 XXXXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQ 831
                A+A+++SV SGS+SRKKRA+LQ VD+SDPLRYLR                  EGIQ
Sbjct: 273  AAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQ 332

Query: 830  XXXXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVIS 651
                          RCG QP FAQWAAAAGVDQK LRKR+N+GI+CKDKM+KSNIRLVIS
Sbjct: 333  ELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKSNIRLVIS 392

Query: 650  IAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 471
            IAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 393  IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 452

Query: 470  IRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQ 291
            IRLPFHMV+ATYRVREAKKQLYS NGRHP++EEVAEATGLSMKRL  VLLTPKAPRSL+Q
Sbjct: 453  IRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQ 512

Query: 290  KIGINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGR 111
            KIGINQNLKPSDVIADPDAETAEDLL+KKFMKQDLEKVLDSL+PREKQV+RWRFG+EDGR
Sbjct: 513  KIGINQNLKPSDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWRFGMEDGR 572

Query: 110  MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK
Sbjct: 573  MKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 608


>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  585 bits (1509), Expect = e-164
 Identities = 328/572 (57%), Positives = 392/572 (68%), Gaps = 6/572 (1%)
 Frame = -1

Query: 1700 MACLLPQFKCPPDNAST-IHLKSYCNNLRTRHLGCSR-----AQCILXXXXXXXXXXXXX 1539
            M+CLLPQF C PD  S   + +++       HL  +R     AQC+L             
Sbjct: 1    MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARDINSLAQCVLSTTSPSTSVGATY 60

Query: 1538 MVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXX 1359
             V+ V KL+ PSL+A+   + S+R   Y GA GPP +AN EATL  E LLT         
Sbjct: 61   -VLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIAAA 119

Query: 1358 XXXXXXXXXXXXXXAQDAAMMISNGPFVMGNFTSKSGSTQLERMHISETERFGKMGHSTL 1179
                          A+DAA+++   P       S   S   E  +I   +   ++  S L
Sbjct: 120  AAEAVTLAKAAVKVAKDAALLVR--PSTRAESISLVSS---EARNIKTAQAASRVRDS-L 173

Query: 1178 NVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXXX 999
              EM   E+H    +   S +L+P ++E ++ + QL+  I V+S RQ+            
Sbjct: 174  RAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAEK 233

Query: 998  ASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQXXXX 819
            A+AN+++V SGS+SRKKRA++Q VD+SDPLRYLR                  EGIQ    
Sbjct: 234  AAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLK 293

Query: 818  XXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKN 639
                      RCG  P FAQWAAAAGVDQK LR+R+N+GILCKDKM+KSN+RLVISIAKN
Sbjct: 294  LEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKN 353

Query: 638  YQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 459
            YQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP
Sbjct: 354  YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 413

Query: 458  FHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGI 279
            FHMV+ATYRV+EA+KQLYSENGR P++EEVAEATGLSMKRL  VLLTPKAPRSL+QKIGI
Sbjct: 414  FHMVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGI 473

Query: 278  NQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTL 99
            NQNLKPS++IADPDAET ED+L ++FMKQDL+KVLDSL+ REKQV+RWRFG++DGRMKTL
Sbjct: 474  NQNLKPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTL 533

Query: 98   QEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            QEIGELMGVSRERIRQIESCAFRKLKNKKRTK
Sbjct: 534  QEIGELMGVSRERIRQIESCAFRKLKNKKRTK 565


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
            sinensis]
          Length = 525

 Score =  582 bits (1500), Expect = e-163
 Identities = 322/515 (62%), Positives = 370/515 (71%), Gaps = 4/515 (0%)
 Frame = -1

Query: 1535 VVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXX 1356
            V+DV KL+LPSLEAH N +A++R   Y GA+GP  + N   +L  E L T          
Sbjct: 4    VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 62

Query: 1355 XXXXXXXXXXXXXAQDAAMMISNG----PFVMGNFTSKSGSTQLERMHISETERFGKMGH 1188
                         A+DAA+M+++     P      +  + +       ++E ER   +G 
Sbjct: 63   AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERERASIIGD 122

Query: 1187 STLNVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXX 1008
            S + VE  P EE+      N S +LEP  +E KL E Q++  I V+S RQT         
Sbjct: 123  SVI-VEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 181

Query: 1007 XXXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQX 828
               A+AN++SV SGS+SR+KR ++Q VDYSDPLRYLR                   GIQ 
Sbjct: 182  AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241

Query: 827  XXXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISI 648
                         RCG  P FAQWAAAAGVDQ+ LR+RLN+GILCKDKM+ SNIRLVISI
Sbjct: 242  LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301

Query: 647  AKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 468
            AKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 302  AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361

Query: 467  RLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQK 288
            RLPFHMV+ATYRV+EA+KQLYSENGRHP+NEEVAEATGLSMKRL  VLLTPKAPRSLDQK
Sbjct: 362  RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQK 421

Query: 287  IGINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRM 108
             GINQNLKPS+VIADP+AETAEDLLIKKFMK+DLEKVLD+L+PRE+QVVRWRFGLEDGRM
Sbjct: 422  FGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRM 481

Query: 107  KTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            KTLQEIGELMGVSRERIRQIES AFRKLKNKKRTK
Sbjct: 482  KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTK 516


>ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
            gi|548831956|gb|ERM94758.1| hypothetical protein
            AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  570 bits (1469), Expect = e-160
 Identities = 318/546 (58%), Positives = 382/546 (69%), Gaps = 6/546 (1%)
 Frame = -1

Query: 1622 LRTRHLGCSRAQCILXXXXXXXXXXXXXMVVDVGKLQLPSLEAHPNCLASDRTLAYVGAI 1443
            +RTR   C + QC+              +VVDV K+++PSL  H   +++   L YVG I
Sbjct: 26   VRTREATCFQTQCV---------SSTATVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGTI 76

Query: 1442 GPPKKANGEATLVNEALLTGXXXXXXXXXXXXXXXXXXXXXXAQDAAMMISNGP----FV 1275
            G  KK + EA LV E+LL                        A+DAA+M+ + P      
Sbjct: 77   GSQKKTDFEAALVTESLLKSEEAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSDK 136

Query: 1274 MGNFTSKSGSTQLERMHISETERFGKMGHSTLNVEMIPNEEHLMHFSHNNSENLEPNDDE 1095
            + +F S++   +L+R  ++E ER G M  S++   + P ++H      + +E  +    E
Sbjct: 137  VDDFPSEADILRLQRARLTEMERIGSMDGSSI-AGIGPRDKHKSVNQLSPNEMADKQSRE 195

Query: 1094 HKLQEMQL--NVPIDVKSGRQTXXXXXXXXXXXXASANLISVNSGSSSRKKRAALQVVDY 921
            + L+ +QL  +  + V+S RQT            A+AN I+V  G++SR+KRA LQ +DY
Sbjct: 196  NILEALQLQHSQRVAVRSRRQTERRARRAKGVEKAAANAITVKLGTTSRRKRAPLQEIDY 255

Query: 920  SDPLRYLRGXXXXXXXXXXXXXXXXXEGIQXXXXXXXXXXXXXXRCGVQPIFAQWAAAAG 741
            SDPLRYLRG                 EGIQ              R G +P F QWAAAAG
Sbjct: 256  SDPLRYLRGTTNSTKLLTATEELELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAG 315

Query: 740  VDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKF 561
            +DQK LR+RL++G  CKDKM+KSNIRLVISIAKNYQG G+++QDLVQEGCRGLV+GAEKF
Sbjct: 316  IDQKALRRRLSYGTHCKDKMIKSNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKF 375

Query: 560  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREAKKQLYSENGRHPD 381
            DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREA KQLYSENGRHP+
Sbjct: 376  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPN 435

Query: 380  NEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPSDVIADPDAETAEDLLIKKF 201
            +EEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPS+VI+DP+AETAEDLL+K+F
Sbjct: 436  DEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMKQF 495

Query: 200  MKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLK 21
            MKQDLEKVL++L+PREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFRKLK
Sbjct: 496  MKQDLEKVLNTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLK 555

Query: 20   NKKRTK 3
            NKKRTK
Sbjct: 556  NKKRTK 561


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  570 bits (1469), Expect = e-160
 Identities = 327/574 (56%), Positives = 381/574 (66%), Gaps = 8/574 (1%)
 Frame = -1

Query: 1700 MACLLPQFKCPPDN------ASTIHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXX 1539
            M+CLLPQFKC PD       A+  H  +   + ++R     RAQCIL             
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTA--- 58

Query: 1538 MVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXX 1359
             V+D+ KL+LPS EA  + +A +    Y         A   +TL  E L+T         
Sbjct: 59   -VLDLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDEAVIAAA 108

Query: 1358 XXXXXXXXXXXXXXAQDAAMMISNGPFVM--GNFTSKSGSTQLERMHISETERFGKMGHS 1185
                          A+DAA+++ N P        TS S          +ETER   +G S
Sbjct: 109  AAEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTIDASRWPQFTETERARIIGDS 168

Query: 1184 TLNVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXX 1005
                E  P EE  M  S   S+ LE    E +L + QL+  I V+S RQT          
Sbjct: 169  VAT-ETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAV 227

Query: 1004 XXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQXX 825
              A+++++SV  GS+S+KKR +LQ VDYSDPLRYLRG                   IQ  
Sbjct: 228  EKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDL 287

Query: 824  XXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIA 645
                        R G QP FAQWAAAAGVDQ+ LRKR+NHG +CKDKM+KSNIRLVISIA
Sbjct: 288  LKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIA 347

Query: 644  KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 465
            KNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 348  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 407

Query: 464  LPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQKI 285
            LPFHMV+ATYRV+EA+KQLYSENGRHPD+EEVAEA GLSMKRL+ VLLTPKAPRSLDQKI
Sbjct: 408  LPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKI 467

Query: 284  GINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMK 105
            G+N +LKPS+VIADP+AETAE+LL+K+FMKQDLEKVL++L+PRE QVVRWRFGLEDGRMK
Sbjct: 468  GMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMK 527

Query: 104  TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            TLQEIGE+MGVSRERIRQIES AFRKLKNKKRTK
Sbjct: 528  TLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTK 561


>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
            gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein
            [Populus trichocarpa]
          Length = 567

 Score =  560 bits (1442), Expect = e-156
 Identities = 320/570 (56%), Positives = 380/570 (66%), Gaps = 4/570 (0%)
 Frame = -1

Query: 1700 MACLLPQFKCPPDNASTIHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXMVVDVG 1521
            M+CLLPQFKC PD  S +H ++  ++  T H      QC+L              V+D+ 
Sbjct: 1    MSCLLPQFKCQPDTFS-VHFRNLQHH-GTNHT--QLPQCVLSSASPSTA------VLDLE 50

Query: 1520 KLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXX 1341
            KL+LPSLE H + ++++R   Y+G IGP KK     +L  E L+                
Sbjct: 51   KLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAAAAEAVA 110

Query: 1340 XXXXXXXXAQDAAMMISNGPFVMGN----FTSKSGSTQLERMHISETERFGKMGHSTLNV 1173
                    A+DAA M  N  F+         S + S       ++E ER   +G S ++ 
Sbjct: 111  LARAAVKVAKDAAEMAKNYSFMKKETKIPIASTTDSFSSMWSLLTEKERADIIGDS-VSA 169

Query: 1172 EMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXXXAS 993
            E    EE+ + +     + LEP  +E  L + QL+  I V+S RQT            A+
Sbjct: 170  ETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAEKAA 229

Query: 992  ANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQXXXXXX 813
            AN++SV SGS+S+KKR  LQ VD SDPLR+ RG                 EGIQ      
Sbjct: 230  ANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLE 289

Query: 812  XXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQ 633
                    R G +P FAQWAAAAGVDQ  LRKRLN+GILCKDKM+KSN+RLVISIAKNYQ
Sbjct: 290  RIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQ 349

Query: 632  GAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 453
            G GMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSD+SRTIRLPFH
Sbjct: 350  GTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPFH 409

Query: 452  MVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQ 273
            MVDATYRV+EA+KQLYSENGRHPD++EVAEA GLSMKRL+ VLLTPKAPRSLDQK+G N 
Sbjct: 410  MVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNM 469

Query: 272  NLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQE 93
            +LK S+V ADP+AETAEDLL+K+FMK+DL KVL SLSPRE QVVRWRFG+EDGRMKTLQE
Sbjct: 470  DLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQE 529

Query: 92   IGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            IGELMGVSRER+RQIE  AFRKLKNK RTK
Sbjct: 530  IGELMGVSRERVRQIELSAFRKLKNKNRTK 559


>gb|EYU27177.1| hypothetical protein MIMGU_mgv1a003367mg [Mimulus guttatus]
          Length = 589

 Score =  559 bits (1440), Expect = e-156
 Identities = 323/597 (54%), Positives = 394/597 (65%), Gaps = 31/597 (5%)
 Frame = -1

Query: 1700 MACLLPQFKCPPDNASTIHLKSYC----NNLRTRHLGCSRAQCILXXXXXXXXXXXXXMV 1533
            M+CLLPQFKC PD  + ++ KS      ++ ++R     R QC+L              +
Sbjct: 1    MSCLLPQFKCSPDTFA-VNFKSQTLFTVHSSKSRESINFRTQCVLSTTSPPPTMAATTTL 59

Query: 1532 VDVGKLQLPSLEAHPNCLASDR--------------------------TLAYVGAIGPPK 1431
            ++  KLQL  LE  PN L +DR                          TL YVG++GPP 
Sbjct: 60   LEFEKLQLSPLETIPNSLPADRSWTTPRAKTSLLDLDKLTSLPVASNKTLTYVGSVGPPS 119

Query: 1430 KANGEATLVNEALLTGXXXXXXXXXXXXXXXXXXXXXXAQDAAMMISNGPFVMGNFTS-K 1254
            + N  A L  EAL+T                       A+DAAMM+S       +  S  
Sbjct: 120  EINLGANLDKEALITSDEAVITAAASEALALAKAAVKVAKDAAMMVSLHRSTKPDTKSFL 179

Query: 1253 SGSTQLERMHISETERFGKMGHSTLNVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQ 1074
               T  ER+ + E E           +    N++H++  S ++ E   P+ +E +L ++Q
Sbjct: 180  EVDTSAERVVVREAE-----------IGSGENDDHVLGESDDSEE---PSAEELELLDLQ 225

Query: 1073 LNVPIDVKSGRQTXXXXXXXXXXXXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRG 894
            L+  I V+S RQ             A+AN++SV SGSS +KKR+ +Q VDYSDPLRYLR 
Sbjct: 226  LSSSIAVRSKRQIERKVRRGRAAEKAAANVVSVKSGSS-KKKRSPVQEVDYSDPLRYLRA 284

Query: 893  XXXXXXXXXXXXXXXXXEGIQXXXXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKR 714
                             EGIQ              R G +P ++QWAAAAGVDQK LR++
Sbjct: 285  TTSSTRLLTASEEQVLSEGIQVLLKLERLQVELIERFGGEPSYSQWAAAAGVDQKTLREQ 344

Query: 713  LNHGILCKDKMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFS 534
            +N+GILCKDKM+KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDA+KGFKFS
Sbjct: 345  INYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFS 404

Query: 533  TYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATG 354
            TYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATYRV+EA+KQLYSENGR P++EEVAEATG
Sbjct: 405  TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRVPNDEEVAEATG 464

Query: 353  LSMKRLTTVLLTPKAPRSLDQKIGINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVL 174
            LSMKRL+ V+LTPK PRSLDQKIG+NQ+LKPS+VI+DP+AET+E+LLIK+FMKQDL  VL
Sbjct: 465  LSMKRLSAVMLTPKPPRSLDQKIGVNQDLKPSEVISDPEAETSEELLIKQFMKQDLADVL 524

Query: 173  DSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            DSL+PREKQVV+WRFG+EDGRMKTLQEIGELMGVSRER+RQIESCAFRKLKNKKRTK
Sbjct: 525  DSLNPREKQVVKWRFGIEDGRMKTLQEIGELMGVSRERVRQIESCAFRKLKNKKRTK 581


>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
            lycopersicum]
          Length = 613

 Score =  559 bits (1440), Expect = e-156
 Identities = 307/518 (59%), Positives = 367/518 (70%), Gaps = 7/518 (1%)
 Frame = -1

Query: 1535 VVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXX 1356
            V  + KL+LPS EA+P+ +A DR   Y GA+GPP +AN +     E  L           
Sbjct: 92   VPGIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKP----EDSLASEEAIVAAAA 147

Query: 1355 XXXXXXXXXXXXXAQDAAMMIS-----NGPFVMGNFTSKSGSTQLERMHISETERFGKMG 1191
                         AQDA M++      +   V     S++ +   E +H+++      +G
Sbjct: 148  AEAVALAKAALKGAQDAVMLVGYNNLKDSDNVGRGTLSEARTAPFESVHLAQPGETRGVG 207

Query: 1190 H-STLN-VEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXX 1017
              + LN  EM      L   +  +S++LEP+ +E ++ + QL+  I VKS RQT      
Sbjct: 208  VCAELNGSEMKWTGSSLFRDTLTDSDDLEPSHEELEILQSQLSNVIAVKSNRQTERKARR 267

Query: 1016 XXXXXXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEG 837
                  A+AN++SV SGS+SRKKRA++Q VDYSDPLRYLRG                  G
Sbjct: 268  AKAVERAAANVVSVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRG 327

Query: 836  IQXXXXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLV 657
            IQ              RCG QP F QWAAAAGVDQ  LRKRLN+GILCKDKM+KSN+RLV
Sbjct: 328  IQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLV 387

Query: 656  ISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 477
            ISIAKNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 388  ISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQS 447

Query: 476  RTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSL 297
            RTIRLPFHMV+ATYRV+EA+KQL +ENGRHP++ EVAEATGLSMKRL  V+LTPKAPRSL
Sbjct: 448  RTIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEATGLSMKRLAAVMLTPKAPRSL 507

Query: 296  DQKIGINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLED 117
            DQK+G N++LKPS+V+ADPDAET+E++L K+FM+QDLEKVLD+L+PREKQVVRWRFGLED
Sbjct: 508  DQKVGFNESLKPSEVLADPDAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLED 567

Query: 116  GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK
Sbjct: 568  GRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 605


>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum]
          Length = 613

 Score =  558 bits (1439), Expect = e-156
 Identities = 308/519 (59%), Positives = 366/519 (70%), Gaps = 8/519 (1%)
 Frame = -1

Query: 1535 VVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXX 1356
            V D+ KL+LPS EA+P+ +A DR   Y GA+GPP +AN +     E  L           
Sbjct: 92   VPDIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKP----ENSLASEEAIVAAAA 147

Query: 1355 XXXXXXXXXXXXXAQDAAMMIS----NGPFVMGNFT-SKSGSTQLERMHIS---ETERFG 1200
                         AQDA M++     N    +G  T S++ +   E +H++   ET R G
Sbjct: 148  AEAVALAKAALKGAQDAVMLVGYNNLNDSDNVGRGTLSEARTAPFESVHLAQPGETRRVG 207

Query: 1199 KMGHSTLNVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXX 1020
                     EM      L   +  +S++LEP+ +E ++ + QL+  I VKS RQT     
Sbjct: 208  VCAELN-GSEMKWTGSSLFRETLTDSDDLEPSPEELEILQSQLSNVIAVKSNRQTERKAK 266

Query: 1019 XXXXXXXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXE 840
                   A+AN+++V SGS+SRKKRA++Q VDYSDPLRYLRG                  
Sbjct: 267  RAKSVEKAAANVVTVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSR 326

Query: 839  GIQXXXXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRL 660
            GIQ              RCG QP F QWAAAAGVDQ  LRKRLN+GILCKDKM+KSN+RL
Sbjct: 327  GIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRL 386

Query: 659  VISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 480
            VISIAKNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 387  VISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 446

Query: 479  SRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRS 300
            SR IRLPFHMV+ATYRV+EA+KQL +ENGRHP++ EVAEA GLSMKRL  V+LTPKAPRS
Sbjct: 447  SRMIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEAAGLSMKRLAAVMLTPKAPRS 506

Query: 299  LDQKIGINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLE 120
            LDQKIG N++LKPS+V+ADP+AET+E++L K+FM+QDLEKVLD+L+PREKQVVRWRFGLE
Sbjct: 507  LDQKIGFNESLKPSEVLADPEAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLE 566

Query: 119  DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK
Sbjct: 567  DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 605


>emb|CAD20831.2| sigma factor [Spinacia oleracea]
          Length = 575

 Score =  552 bits (1423), Expect = e-154
 Identities = 310/574 (54%), Positives = 373/574 (64%), Gaps = 9/574 (1%)
 Frame = -1

Query: 1700 MACLLPQFKCPPDN---ASTIHLKSYCNN----LRTRHLGCSRAQCILXXXXXXXXXXXX 1542
            M CLLPQFKC PD    +S +H  S  ++    LR R L C R QC +            
Sbjct: 1    MTCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAET 60

Query: 1541 XMVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXX 1362
              + DV KL+LP +E++ N L++     ++  +G P +   +  L  + L+         
Sbjct: 61   S-IFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAA 119

Query: 1361 XXXXXXXXXXXXXXXAQDAAMMISNGPFVMGNFTSKSGSTQLERMHISETERFGKMGHST 1182
                           A+DAA+M  N          +  S       + E E+ G M +  
Sbjct: 120  AAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLEGQSLHFSGAQLLENEQVGSMRN-- 177

Query: 1181 LNVEMIPNEEHLMHFSHNNSE--NLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXX 1008
                     E+ +      SE  ++EP  +E +L E++L+  I V+S RQ          
Sbjct: 178  -----FEGSENSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRARA 232

Query: 1007 XXXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQX 828
                ++N++SV  GS+SRKKR ++Q VDYSDPLRYLRG                  GIQ 
Sbjct: 233  AEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQD 292

Query: 827  XXXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISI 648
                         R G  P F QWAAAAG+DQ+ LR+RLNHG  CKDKM+KSN+RLVISI
Sbjct: 293  LLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISI 352

Query: 647  AKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 468
            AKNYQG+GMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 353  AKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 412

Query: 467  RLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQK 288
            RLPFHMV+ATYRV+EA+KQL SENG+ P+NEEVAEATGLSMKRLT VL+TPKAPRSLDQK
Sbjct: 413  RLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQK 472

Query: 287  IGINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRM 108
            IG N NLKPS+VIADP+AETAEDLL K+FM+QDLEKVLD+LS REKQV+RWRFGLEDGRM
Sbjct: 473  IGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRM 532

Query: 107  KTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT 6
            KTLQEIGELMGVSRERIRQIES AFRKL+NKK+T
Sbjct: 533  KTLQEIGELMGVSRERIRQIESSAFRKLQNKKKT 566


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  549 bits (1415), Expect = e-153
 Identities = 317/585 (54%), Positives = 385/585 (65%), Gaps = 19/585 (3%)
 Frame = -1

Query: 1700 MACLLPQFKCPPDNASTIHLKS--------------YCNNLRTRHLGCSRAQCILXXXXX 1563
            M+CLLPQFKC P+  S I  K+              Y +  + R     R QCIL     
Sbjct: 1    MSCLLPQFKCHPETFS-IQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASP 59

Query: 1562 XXXXXXXXMVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTG 1383
                      +DV +L+LP  + + + ++ +R  +Y+GA+        E++L +  LLT 
Sbjct: 60   PTSTGTAT-TLDVDRLKLPPFDTNTDSVSVERLRSYLGAV--------ESSLAS-TLLTS 109

Query: 1382 XXXXXXXXXXXXXXXXXXXXXXAQDAAMMISNGPFVMGNFTSKSGSTQLERMHIS----- 1218
                                  A+DAA++ +N         S+S S + + +H       
Sbjct: 110  EEASIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQS-SPKPDALHFKWAQFM 168

Query: 1217 ETERFGKMGHSTLNVEMIPNEEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQ 1038
            E+ER   +G   + V   P E   +  S   S+++EP  +E +L + +L+  I VKS RQ
Sbjct: 169  ESERADIIGEP-VGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQ 227

Query: 1037 TXXXXXXXXXXXXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXX 858
            T               +++S  SGSSSRKKR ++Q VDYSDPLRYLR             
Sbjct: 228  TERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATE 287

Query: 857  XXXXXEGIQXXXXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMV 678
                 EGIQ              R G +P FAQWAAAAGV+Q+ LRKRLN+G LCKDKM+
Sbjct: 288  ELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMI 347

Query: 677  KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVR 498
            KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVR
Sbjct: 348  KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 407

Query: 497  KSLSDQSRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLT 318
            K LSDQSRTIRLPFHMV+ATYRV+EA+KQL  ENGRHPD++E+AEA GLSMKRL  VL+T
Sbjct: 408  KFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMT 467

Query: 317  PKAPRSLDQKIGINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVR 138
            PKAPRSL+QKIGINQNLKPS+VI+DP+AET ED+LIK+FMKQDLEKVLDSL+PREKQV+R
Sbjct: 468  PKAPRSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIR 527

Query: 137  WRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTK 3
            WRFG+EDGRMKTLQEIGE+MGVSRERIRQIESCAFRKLKNKKRTK
Sbjct: 528  WRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTK 572


>ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutrema salsugineum]
            gi|557095448|gb|ESQ36030.1| hypothetical protein
            EUTSA_v10007187mg [Eutrema salsugineum]
          Length = 579

 Score =  542 bits (1396), Expect = e-151
 Identities = 311/578 (53%), Positives = 376/578 (65%), Gaps = 14/578 (2%)
 Frame = -1

Query: 1697 ACLLPQFKCPPDNASTIHLK-SYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXMVVDVG 1521
            +CLLPQFKC PD+ S IH K SY  +   +     + QC +              ++DV 
Sbjct: 3    SCLLPQFKCQPDSFS-IHFKTSYSLSKHNKGSVFFQPQCAVSTSPPLLTS-----MLDVA 56

Query: 1520 KLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXX 1341
            KL+LPS +   +   SDR   Y G +GP  +A     L +E LLT               
Sbjct: 57   KLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVA 116

Query: 1340 XXXXXXXXAQDAAMMIS--NGPFVMGNFTSKSGSTQLERMHISETERFGKMGHSTLNVEM 1167
                    A+DA    +  N   V+ +   K           +E ER G +GH  ++   
Sbjct: 117  LARAAVKVAKDATSFRNSYNTKVVVSSAADKRSKWD----QFTEKERAGILGHLAVSDTG 172

Query: 1166 IPNEEHLM-----------HFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXX 1020
            + +++                ++ +S +L+    E +L E QL+V   V+S RQT     
Sbjct: 173  VVSDKSTAPAPAPAPAPAPDCNNESSGDLKSEKQEVELLEEQLSVSSAVRSTRQTERKAR 232

Query: 1019 XXXXXXXASANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXE 840
                    ++++ SV +GSSSRKKRA  Q VD++DPLRYLR                  E
Sbjct: 233  RAKGLEKTASSMQSVKTGSSSRKKRAPSQEVDHNDPLRYLRMTTSSSKLLTAREEQELSE 292

Query: 839  GIQXXXXXXXXXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRL 660
            GIQ              RCG QP FAQWA+AAGVDQK LRKR+N+G  CKD+M+KSNIRL
Sbjct: 293  GIQDLLKLERLQAELTERCGHQPTFAQWASAAGVDQKSLRKRINYGTQCKDRMIKSNIRL 352

Query: 659  VISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 480
            VISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 353  VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 412

Query: 479  SRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRS 300
            SR IRLPFHMV+ATYRV+EA+KQLYSE G+ P+NEEVAEATGLSMKRL  VLL+PK PRS
Sbjct: 413  SRMIRLPFHMVEATYRVKEARKQLYSETGKQPENEEVAEATGLSMKRLMAVLLSPKPPRS 472

Query: 299  LDQKIGINQNLKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLE 120
            LDQKIGINQNLKPS+VIADP+AET+ED+LIK+FM+QDL+KVLDSLS REKQV+RWRFG+E
Sbjct: 473  LDQKIGINQNLKPSEVIADPEAETSEDILIKQFMRQDLDKVLDSLSTREKQVIRWRFGME 532

Query: 119  DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRT 6
            DGRMKTLQEIGE MGVSRER+RQIES AFRKLKNKKR+
Sbjct: 533  DGRMKTLQEIGETMGVSRERVRQIESSAFRKLKNKKRS 570


>ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
            lyrata] gi|297335543|gb|EFH65960.1| hypothetical protein
            ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  541 bits (1393), Expect = e-151
 Identities = 303/566 (53%), Positives = 369/566 (65%), Gaps = 2/566 (0%)
 Frame = -1

Query: 1697 ACLLPQFKCPPDNASTIHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXMVVDVGK 1518
            +CLLPQFKCPPD+ S     S+C     +     + QC +              ++DV K
Sbjct: 3    SCLLPQFKCPPDSFSIHFRTSFCARKHNKGSVFFQPQCAVSTSPALLTS-----MLDVAK 57

Query: 1517 LQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXXX 1338
            L+LPS +   +   SDR   Y    GP  +A     L +E LLT                
Sbjct: 58   LRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVAL 117

Query: 1337 XXXXXXXAQDAAMMISNGPFVMGNFTSKSGSTQLERMHISETERFGKMGHSTLNVEMIPN 1158
                   A+DA +  ++    +    S +   + +    +E ER G +GH  ++   I +
Sbjct: 118  ARAAVKVAKDATLFKNSNNTNL--LISSTADKRSKWDQFTEKERAGILGHLAVSDNGIVS 175

Query: 1157 EEHLMHFSHNNSE-NLEPNDDEH-KLQEMQLNVPIDVKSGRQTXXXXXXXXXXXXASANL 984
            ++     S+  S  +LE    E  +L E Q +V + V+S RQT             ++ +
Sbjct: 176  DKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGI 235

Query: 983  ISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQXXXXXXXXX 804
             SV +GS+ RKKR   Q VD++DPLRYLR                   GIQ         
Sbjct: 236  PSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQ 295

Query: 803  XXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQGAG 624
                 RCG QP FAQWA+AAGVDQK LRKR++HG LCKDKM+KSNIRLVISIAKNYQGAG
Sbjct: 296  TELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAG 355

Query: 623  MNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVD 444
            MNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMV+
Sbjct: 356  MNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVE 415

Query: 443  ATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLK 264
            ATYRV+EA+KQLYSE G+HP NEE+AEATGLSMKRL  VLL+PK PRSLDQKIG+NQNLK
Sbjct: 416  ATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLK 475

Query: 263  PSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGE 84
            PS+VIADP+A T+ED+LIK+FM+QDL+KVLDSL  REKQV+RWRFG+EDGRMKTLQEIGE
Sbjct: 476  PSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGE 535

Query: 83   LMGVSRERIRQIESCAFRKLKNKKRT 6
            +MGVSRER+RQIES AFRKLKNKKR+
Sbjct: 536  MMGVSRERVRQIESSAFRKLKNKKRS 561


>ref|XP_007203880.1| hypothetical protein PRUPE_ppa006657mg [Prunus persica]
            gi|462399411|gb|EMJ05079.1| hypothetical protein
            PRUPE_ppa006657mg [Prunus persica]
          Length = 401

 Score =  539 bits (1388), Expect = e-150
 Identities = 282/385 (73%), Positives = 311/385 (80%)
 Frame = -1

Query: 1157 EEHLMHFSHNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXXXASANLIS 978
            E H +  +   SE++E  + E +L   QL+  I  +S RQ             A+A+++S
Sbjct: 9    ENHFIQVAIKESEDVESTNQEFELLREQLSEGITARSSRQIERKARRAKAAEKAAASVVS 68

Query: 977  VNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQXXXXXXXXXXX 798
            V SGS+SRKKRA+LQ VD+SDPLRYLR                  EGIQ           
Sbjct: 69   VKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELLKLEKLQEE 128

Query: 797  XXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQGAGMN 618
               RCG QP  AQWAAAAGVDQK LRKR+N+GILCKDKM+KSNIRLVISIAKNYQGAGMN
Sbjct: 129  LVQRCGGQPTIAQWAAAAGVDQKTLRKRINYGILCKDKMIKSNIRLVISIAKNYQGAGMN 188

Query: 617  LQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDAT 438
            LQDLVQ+GCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+AT
Sbjct: 189  LQDLVQQGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEAT 248

Query: 437  YRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPS 258
            YRVREAKKQLYS NGRHP++EEVAEATGLSMKRL  VLLTPKAPRSL+QKIGINQNLKPS
Sbjct: 249  YRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPS 308

Query: 257  DVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELM 78
            +VIADP+AETAED+L+KKFMKQDLEKVLDSL+ REKQVVRWRFGLEDGRMKTLQEIGELM
Sbjct: 309  EVIADPEAETAEDMLMKKFMKQDLEKVLDSLNAREKQVVRWRFGLEDGRMKTLQEIGELM 368

Query: 77   GVSRERIRQIESCAFRKLKNKKRTK 3
            GVSRERIRQIESCAFRKLKNKKRTK
Sbjct: 369  GVSRERIRQIESCAFRKLKNKKRTK 393


>ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana]
            gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA
            polymerase sigma factor sigB; Short=Sigma factor B;
            Short=Sigma-B; AltName: Full=Protein ABERRANT CHLOROPLAST
            1; AltName: Full=RNA polymerase sigma factor sig1;
            Short=Atsig1; Short=Sigma factor 1; AltName: Full=RNA
            polymerase sigma factor sig2; Short=Atsig2; Short=Sigma
            factor 2; AltName: Full=RNA polymerase sigma factor sigA;
            Short=Sigma factor A; Short=Sigma-A; Flags: Precursor
            gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22
            [Arabidopsis thaliana]
            gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis
            thaliana] gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis
            thaliana] gi|2597831|emb|CAA75584.1| sigma factor
            [Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1| plastid
            RNA polymerase sigma-subunit [Arabidopsis thaliana]
            gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis
            thaliana] gi|133778838|gb|ABO38759.1| At1g08540
            [Arabidopsis thaliana] gi|332190182|gb|AEE28303.1| RNA
            polymerase sigma subunit 2 [Arabidopsis thaliana]
          Length = 572

 Score =  539 bits (1388), Expect = e-150
 Identities = 302/567 (53%), Positives = 371/567 (65%), Gaps = 4/567 (0%)
 Frame = -1

Query: 1697 ACLLPQFKCPPDNASTIHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXMVVDVGK 1518
            +CLLPQFKCPPD+ S     S+C     +     + QC +              ++DV K
Sbjct: 3    SCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTS-----MLDVAK 57

Query: 1517 LQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXXX 1338
            L+LPS +   + L SDR   Y    GP  +A     L +E LLT                
Sbjct: 58   LRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVAL 117

Query: 1337 XXXXXXXAQDAAMMISNGPFVMGNFTSKSGSTQLERMHISETERFGKMGHSTLNVEMIPN 1158
                   A+DA +  ++    +   TS +   + +    +E ER G +GH  ++   I +
Sbjct: 118  ARAAVKVAKDATLFKNSNNTNL--LTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVS 175

Query: 1157 EEHLMHFSHNNSENL----EPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXXXASA 990
            ++  +  S +N E++        +E +L E Q +V + V+S RQT             ++
Sbjct: 176  DK--ITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTAS 233

Query: 989  NLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXEGIQXXXXXXX 810
             + SV +GSS +KKR   Q VD++DPLRYLR                   GIQ       
Sbjct: 234  GIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLER 293

Query: 809  XXXXXXXRCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQG 630
                   R G QP FAQWA+AAGVDQK LR+R++HG LCKDKM+KSNIRLVISIAKNYQG
Sbjct: 294  LQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQG 353

Query: 629  AGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 450
            AGMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHM
Sbjct: 354  AGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHM 413

Query: 449  VDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQN 270
            V+ATYRV+EA+KQLYSE G+HP NEE+AEATGLSMKRL  VLL+PK PRSLDQKIG+NQN
Sbjct: 414  VEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQN 473

Query: 269  LKPSDVIADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEI 90
            LKPS+VIADP+A T+ED+LIK+FM+QDL+KVLDSL  REKQV+RWRFG+EDGRMKTLQEI
Sbjct: 474  LKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEI 533

Query: 89   GELMGVSRERIRQIESCAFRKLKNKKR 9
            GE+MGVSRER+RQIES AFRKLKNKKR
Sbjct: 534  GEMMGVSRERVRQIESSAFRKLKNKKR 560