BLASTX nr result

ID: Cocculus23_contig00004136 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00004136
         (325 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513126.1| DNA binding protein, putative [Ricinus commu...    57   4e-06
ref|XP_002306366.2| myb family transcription factor family prote...    56   5e-06

>ref|XP_002513126.1| DNA binding protein, putative [Ricinus communis]
           gi|223548137|gb|EEF49629.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 295

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 26/44 (59%), Positives = 29/44 (65%)
 Frame = +3

Query: 3   PPSAPGVGVYXXXXXXXXXXXXLISAVGTPVNLPAPGHMAYGLR 134
           P  +PGVGVY            L+SAVGTPVNLPAP HMAYG+R
Sbjct: 223 PAGSPGVGVYGSPTIGQPIGGPLVSAVGTPVNLPAPAHMAYGIR 266


>ref|XP_002306366.2| myb family transcription factor family protein [Populus
           trichocarpa] gi|550338443|gb|EEE93362.2| myb family
           transcription factor family protein [Populus
           trichocarpa]
          Length = 295

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 29/73 (39%), Positives = 33/73 (45%)
 Frame = +3

Query: 3   PPSAPGVGVYXXXXXXXXXXXXLISAVGTPVNLPAPGHMAYGLRXXXXXXXXXXXXXXXX 182
           P   PGVG+Y            L+SAVGTPVNLPAP HMAYG+R                
Sbjct: 223 PVGPPGVGIYGPPTIGQPIGGPLVSAVGTPVNLPAPAHMAYGVRAPVPGTVVPGAPMNMV 282

Query: 183 XXXXXXXHASTHR 221
                  H +THR
Sbjct: 283 PMTYPMPHTTTHR 295


Top