BLASTX nr result
ID: Cocculus23_contig00003406
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00003406
(595 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283144.1| PREDICTED: glycine-rich RNA-binding protein ... 139 5e-31
ref|XP_002316957.1| RNA-binding family protein [Populus trichoca... 136 4e-30
ref|XP_002530915.1| RNA binding protein, putative [Ricinus commu... 135 1e-29
gb|ABK95573.1| unknown [Populus trichocarpa] 135 1e-29
ref|XP_007212216.1| hypothetical protein PRUPE_ppa013115mg [Prun... 134 1e-29
ref|XP_007133034.1| hypothetical protein PHAVU_011G145700g [Phas... 133 3e-29
ref|XP_004151968.1| PREDICTED: nucleolysin TIAR-like [Cucumis sa... 133 3e-29
gb|AFK44512.1| unknown [Medicago truncatula] 133 3e-29
ref|XP_006659102.1| PREDICTED: glycine-rich RNA-binding protein ... 133 4e-29
ref|NP_001150207.1| LOC100283837 [Zea mays] gi|195621336|gb|ACG3... 133 4e-29
ref|XP_002445020.1| hypothetical protein SORBIDRAFT_07g002960 [S... 132 6e-29
ref|XP_007021155.1| RNA-binding family protein [Theobroma cacao]... 132 7e-29
ref|NP_001060964.1| Os08g0139000 [Oryza sativa Japonica Group] g... 132 7e-29
ref|NP_200269.1| RNA recognition motif-containing protein [Arabi... 132 1e-28
ref|XP_004505422.1| PREDICTED: nucleolysin TIA-1 isoform p40-lik... 132 1e-28
ref|NP_001059935.1| Os07g0549800 [Oryza sativa Japonica Group] g... 132 1e-28
ref|XP_002864345.1| RNA recognition motif-containing protein [Ar... 132 1e-28
gb|EEC82875.1| hypothetical protein OsI_27755 [Oryza sativa Indi... 132 1e-28
gb|EAZ04269.1| hypothetical protein OsI_26412 [Oryza sativa Indi... 132 1e-28
ref|XP_003573359.1| PREDICTED: nucleolin-like [Brachypodium dist... 131 1e-28
>ref|XP_002283144.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|147854770|emb|CAN78606.1| hypothetical protein
VITISV_024164 [Vitis vinifera]
gi|302143178|emb|CBI20473.3| unnamed protein product
[Vitis vinifera]
Length = 135
Score = 139 bits (351), Expect = 5e-31
Identities = 77/116 (66%), Positives = 83/116 (71%)
Frame = -2
Query: 519 MAMRLAVAQRGLGRRLXXXXXXXXXXXXXXXXXXXXXXXSTNLFVSGLSKRTTSEGLGEA 340
MAMR A A RRL STNLFVSGLSKRTTSEGL EA
Sbjct: 1 MAMRAAAAAPRSLRRLFSTSTFIPPPITAATPATPPAEPSTNLFVSGLSKRTTSEGLHEA 60
Query: 339 FSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIEGMDGKFLDGWVIFAEY 172
FSKFGQV++ARVVTDR SGYSKGFGFVRY +LE+AA+GI+GMDGKFLDGWVIFAEY
Sbjct: 61 FSKFGQVVNARVVTDRVSGYSKGFGFVRYVSLEDAAEGIKGMDGKFLDGWVIFAEY 116
>ref|XP_002316957.1| RNA-binding family protein [Populus trichocarpa]
gi|222860022|gb|EEE97569.1| RNA-binding family protein
[Populus trichocarpa]
Length = 153
Score = 136 bits (343), Expect = 4e-30
Identities = 66/76 (86%), Positives = 73/76 (96%)
Frame = -2
Query: 399 TNLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIE 220
TNLFVSGLSKRTTSEGL EAFSKFG+V+ ARVVTDR SGYSKGFGFV+YATLE+AA+GI+
Sbjct: 55 TNLFVSGLSKRTTSEGLQEAFSKFGEVVQARVVTDRVSGYSKGFGFVKYATLEDAAEGIK 114
Query: 219 GMDGKFLDGWVIFAEY 172
GMDG+FLDGWVIFAEY
Sbjct: 115 GMDGQFLDGWVIFAEY 130
>ref|XP_002530915.1| RNA binding protein, putative [Ricinus communis]
gi|223529509|gb|EEF31464.1| RNA binding protein,
putative [Ricinus communis]
Length = 354
Score = 135 bits (339), Expect = 1e-29
Identities = 65/76 (85%), Positives = 71/76 (93%)
Frame = -2
Query: 399 TNLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIE 220
TNLFVSGLSKRTT+EGL +AFSKFG+V+ ARVVTDR SGYSKGFGFVRY +LE+A KGIE
Sbjct: 52 TNLFVSGLSKRTTTEGLKQAFSKFGEVVQARVVTDRVSGYSKGFGFVRYGSLEDAEKGIE 111
Query: 219 GMDGKFLDGWVIFAEY 172
GMDGKFLDGWVIFAEY
Sbjct: 112 GMDGKFLDGWVIFAEY 127
>gb|ABK95573.1| unknown [Populus trichocarpa]
Length = 149
Score = 135 bits (339), Expect = 1e-29
Identities = 64/76 (84%), Positives = 72/76 (94%)
Frame = -2
Query: 399 TNLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIE 220
TNLFVSGLSKRTT+EGL EAFSKFG+V+ A+VVTDR SGYSKGFGFVRY TLE+AA+GI+
Sbjct: 54 TNLFVSGLSKRTTTEGLQEAFSKFGEVVQAKVVTDRTSGYSKGFGFVRYGTLEDAAEGIK 113
Query: 219 GMDGKFLDGWVIFAEY 172
GMDG+FLDGWVIFAEY
Sbjct: 114 GMDGQFLDGWVIFAEY 129
>ref|XP_007212216.1| hypothetical protein PRUPE_ppa013115mg [Prunus persica]
gi|462408081|gb|EMJ13415.1| hypothetical protein
PRUPE_ppa013115mg [Prunus persica]
Length = 139
Score = 134 bits (338), Expect = 1e-29
Identities = 66/76 (86%), Positives = 71/76 (93%)
Frame = -2
Query: 399 TNLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIE 220
TNLFVSGLSKRTTSE L EAFS+FG+V+ ARVVTDR SGYSKGFGFVRYATLE+A KGI+
Sbjct: 43 TNLFVSGLSKRTTSEKLQEAFSQFGEVVHARVVTDRVSGYSKGFGFVRYATLEDAGKGID 102
Query: 219 GMDGKFLDGWVIFAEY 172
GMDGKFLDGWVIFAEY
Sbjct: 103 GMDGKFLDGWVIFAEY 118
>ref|XP_007133034.1| hypothetical protein PHAVU_011G145700g [Phaseolus vulgaris]
gi|561006034|gb|ESW05028.1| hypothetical protein
PHAVU_011G145700g [Phaseolus vulgaris]
Length = 144
Score = 133 bits (335), Expect = 3e-29
Identities = 66/75 (88%), Positives = 70/75 (93%)
Frame = -2
Query: 396 NLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIEG 217
NLFVSGLSKRTT+E L E FSKFG+V+ ARVVTDR SGYSKGFGFV+YATLEEAAKGIEG
Sbjct: 50 NLFVSGLSKRTTTEKLREEFSKFGEVVHARVVTDRVSGYSKGFGFVQYATLEEAAKGIEG 109
Query: 216 MDGKFLDGWVIFAEY 172
MDGKFLDGWVIFAEY
Sbjct: 110 MDGKFLDGWVIFAEY 124
>ref|XP_004151968.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
gi|449496932|ref|XP_004160266.1| PREDICTED: nucleolysin
TIAR-like [Cucumis sativus]
Length = 174
Score = 133 bits (335), Expect = 3e-29
Identities = 65/76 (85%), Positives = 71/76 (93%)
Frame = -2
Query: 399 TNLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIE 220
TNLFVSGLSKRTT+E L EAF+KFG+V ARVVTDR +GYSKGFGFV+YATLE+AAKGIE
Sbjct: 79 TNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIE 138
Query: 219 GMDGKFLDGWVIFAEY 172
GMDGKFLDGWVIFAEY
Sbjct: 139 GMDGKFLDGWVIFAEY 154
>gb|AFK44512.1| unknown [Medicago truncatula]
Length = 144
Score = 133 bits (335), Expect = 3e-29
Identities = 65/76 (85%), Positives = 71/76 (93%)
Frame = -2
Query: 399 TNLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIE 220
TNLFVSGLSKRTT+E L EAF KFG+V+ ARVVTDR SGYSKGFGFV+YATLE+AAKGIE
Sbjct: 51 TNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIE 110
Query: 219 GMDGKFLDGWVIFAEY 172
GMDGKFL+GWVIFAEY
Sbjct: 111 GMDGKFLEGWVIFAEY 126
>ref|XP_006659102.1| PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial-like
[Oryza brachyantha]
Length = 141
Score = 133 bits (334), Expect = 4e-29
Identities = 63/75 (84%), Positives = 72/75 (96%)
Frame = -2
Query: 396 NLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIEG 217
NLFVSGLSKRTT++GL EAF+KFG+V+ ARVVTDR +G+SKGFGFVRYAT+E+AAKGIEG
Sbjct: 37 NLFVSGLSKRTTTDGLREAFAKFGEVLHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEG 96
Query: 216 MDGKFLDGWVIFAEY 172
MDGKFLDGWVIFAEY
Sbjct: 97 MDGKFLDGWVIFAEY 111
>ref|NP_001150207.1| LOC100283837 [Zea mays] gi|195621336|gb|ACG32498.1| nucleolin [Zea
mays] gi|195637560|gb|ACG38248.1| nucleolin [Zea mays]
gi|223948323|gb|ACN28245.1| unknown [Zea mays]
gi|413917478|gb|AFW57410.1| nucleolin [Zea mays]
Length = 140
Score = 133 bits (334), Expect = 4e-29
Identities = 65/75 (86%), Positives = 70/75 (93%)
Frame = -2
Query: 396 NLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIEG 217
NLFVSGLSKRTTSEGL EAF++FG+V+ ARVVTDR SG+SKGFGFVRYAT EEAAKGIEG
Sbjct: 36 NLFVSGLSKRTTSEGLREAFAEFGEVLHARVVTDRVSGFSKGFGFVRYATTEEAAKGIEG 95
Query: 216 MDGKFLDGWVIFAEY 172
DGKFLDGWVIFAEY
Sbjct: 96 KDGKFLDGWVIFAEY 110
>ref|XP_002445020.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
gi|241941370|gb|EES14515.1| hypothetical protein
SORBIDRAFT_07g002960 [Sorghum bicolor]
Length = 140
Score = 132 bits (333), Expect = 6e-29
Identities = 64/75 (85%), Positives = 70/75 (93%)
Frame = -2
Query: 396 NLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIEG 217
NLFVSGLSKRTT+EGL +AF+KFG+V+ ARVVTDR SG+SKGFGFVRYAT EEA KGIEG
Sbjct: 36 NLFVSGLSKRTTTEGLRDAFAKFGEVVHARVVTDRVSGFSKGFGFVRYATTEEATKGIEG 95
Query: 216 MDGKFLDGWVIFAEY 172
MDGKFLDGWVIFAEY
Sbjct: 96 MDGKFLDGWVIFAEY 110
>ref|XP_007021155.1| RNA-binding family protein [Theobroma cacao]
gi|508720783|gb|EOY12680.1| RNA-binding family protein
[Theobroma cacao]
Length = 156
Score = 132 bits (332), Expect = 7e-29
Identities = 66/76 (86%), Positives = 69/76 (90%)
Frame = -2
Query: 399 TNLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIE 220
TNLFVSGL+KRTT E L EAFS+FGQV+ ARVVTDR SGYSKGFGFVRYATLEEA KG E
Sbjct: 56 TNLFVSGLNKRTTMEKLREAFSQFGQVVDARVVTDRVSGYSKGFGFVRYATLEEAEKGRE 115
Query: 219 GMDGKFLDGWVIFAEY 172
GMDGKFLDGWVIFAEY
Sbjct: 116 GMDGKFLDGWVIFAEY 131
>ref|NP_001060964.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|38636774|dbj|BAD03017.1| putative RNA recognition
motif (RRM)-containing protein [Oryza sativa Japonica
Group] gi|113622933|dbj|BAF22878.1| Os08g0139000 [Oryza
sativa Japonica Group] gi|215767574|dbj|BAG99802.1|
unnamed protein product [Oryza sativa Japonica Group]
gi|222639884|gb|EEE68016.1| hypothetical protein
OsJ_25986 [Oryza sativa Japonica Group]
Length = 141
Score = 132 bits (332), Expect = 7e-29
Identities = 62/75 (82%), Positives = 72/75 (96%)
Frame = -2
Query: 396 NLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIEG 217
NLF+SGLSKRTT++GL EAF+KFG+V+ ARVVTDR +G+SKGFGFVRYAT+E+AAKGIEG
Sbjct: 37 NLFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEG 96
Query: 216 MDGKFLDGWVIFAEY 172
MDGKFLDGWVIFAEY
Sbjct: 97 MDGKFLDGWVIFAEY 111
>ref|NP_200269.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9758950|dbj|BAB09337.1| unnamed protein product
[Arabidopsis thaliana] gi|18175762|gb|AAL59923.1|
unknown protein [Arabidopsis thaliana]
gi|20465513|gb|AAM20239.1| unknown protein [Arabidopsis
thaliana] gi|21553374|gb|AAM62467.1| unknown
[Arabidopsis thaliana] gi|332009129|gb|AED96512.1| RNA
recognition motif-containing protein [Arabidopsis
thaliana]
Length = 156
Score = 132 bits (331), Expect = 1e-28
Identities = 64/76 (84%), Positives = 70/76 (92%)
Frame = -2
Query: 399 TNLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIE 220
TNLFVSGLSKRTTSEGL AF++FG+V A+VVTDR SGYSKGFGFVRYATLE++AKGI
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 219 GMDGKFLDGWVIFAEY 172
GMDGKFLDGWVIFAEY
Sbjct: 116 GMDGKFLDGWVIFAEY 131
>ref|XP_004505422.1| PREDICTED: nucleolysin TIA-1 isoform p40-like [Cicer arietinum]
Length = 142
Score = 132 bits (331), Expect = 1e-28
Identities = 64/76 (84%), Positives = 70/76 (92%)
Frame = -2
Query: 399 TNLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIE 220
TNLFVSGLSKRTT+E L E F KFG+V+ ARVVTDR SGYSKGFGFV+YAT+E+AAKGIE
Sbjct: 46 TNLFVSGLSKRTTTERLREEFQKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIE 105
Query: 219 GMDGKFLDGWVIFAEY 172
GMDGKFLDGWVIFAEY
Sbjct: 106 GMDGKFLDGWVIFAEY 121
>ref|NP_001059935.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|28564803|dbj|BAC57733.1| RNA recognition motif
(RRM)-containing protein-like [Oryza sativa Japonica
Group] gi|113611471|dbj|BAF21849.1| Os07g0549800 [Oryza
sativa Japonica Group] gi|125600644|gb|EAZ40220.1|
hypothetical protein OsJ_24665 [Oryza sativa Japonica
Group] gi|215767980|dbj|BAH00209.1| unnamed protein
product [Oryza sativa Japonica Group]
Length = 133
Score = 132 bits (331), Expect = 1e-28
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = -2
Query: 396 NLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIEG 217
NLFVSGL+KRTTS+GL EAFSKFGQV+ ARV+TDR SGYS+GFGFV+YAT+EEA +GI+G
Sbjct: 36 NLFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKG 95
Query: 216 MDGKFLDGWVIFAEY 172
MDGKFLDGWVIFAEY
Sbjct: 96 MDGKFLDGWVIFAEY 110
>ref|XP_002864345.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata] gi|297310180|gb|EFH40604.1| RNA recognition
motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 156
Score = 132 bits (331), Expect = 1e-28
Identities = 64/76 (84%), Positives = 70/76 (92%)
Frame = -2
Query: 399 TNLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIE 220
TNLFVSGLSKRTTSEGL AF++FG+V A+VVTDR SGYSKGFGFVRYATLE++AKGI
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 219 GMDGKFLDGWVIFAEY 172
GMDGKFLDGWVIFAEY
Sbjct: 116 GMDGKFLDGWVIFAEY 131
>gb|EEC82875.1| hypothetical protein OsI_27755 [Oryza sativa Indica Group]
Length = 141
Score = 132 bits (331), Expect = 1e-28
Identities = 61/75 (81%), Positives = 72/75 (96%)
Frame = -2
Query: 396 NLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIEG 217
NLF+SGLSKRTT++GL EAF+KFG+V+ ARVVTDR +G+SKGFGF+RYAT+E+AAKGIEG
Sbjct: 37 NLFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFIRYATVEDAAKGIEG 96
Query: 216 MDGKFLDGWVIFAEY 172
MDGKFLDGWVIFAEY
Sbjct: 97 MDGKFLDGWVIFAEY 111
>gb|EAZ04269.1| hypothetical protein OsI_26412 [Oryza sativa Indica Group]
Length = 133
Score = 132 bits (331), Expect = 1e-28
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = -2
Query: 396 NLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIEG 217
NLFVSGL+KRTTS+GL EAFSKFGQV+ ARV+TDR SGYS+GFGFV+YAT+EEA +GI+G
Sbjct: 36 NLFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKG 95
Query: 216 MDGKFLDGWVIFAEY 172
MDGKFLDGWVIFAEY
Sbjct: 96 MDGKFLDGWVIFAEY 110
>ref|XP_003573359.1| PREDICTED: nucleolin-like [Brachypodium distachyon]
Length = 153
Score = 131 bits (330), Expect = 1e-28
Identities = 62/75 (82%), Positives = 72/75 (96%)
Frame = -2
Query: 396 NLFVSGLSKRTTSEGLGEAFSKFGQVMSARVVTDRNSGYSKGFGFVRYATLEEAAKGIEG 217
NLFVSGLSKRTT++GL EAF+KFG+VM ARVVTDR +G+SKGFGFVRYA++E+A+KGIEG
Sbjct: 49 NLFVSGLSKRTTTDGLREAFAKFGEVMHARVVTDRVTGFSKGFGFVRYASVEDASKGIEG 108
Query: 216 MDGKFLDGWVIFAEY 172
MDGKFLDGWVIFAEY
Sbjct: 109 MDGKFLDGWVIFAEY 123