BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00001650
         (1596 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   607   e-171
ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao] g...   600   e-169
ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   583   e-164
gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]     583   e-164
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   579   e-162
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...   570   e-160
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...   567   e-159
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   567   e-159
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   566   e-159
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...   562   e-157
ref|XP_006593758.1| PREDICTED: RNA polymerase sigma factor sigE,...   561   e-157
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,...   561   e-157
ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glyci...   559   e-156
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...   556   e-156
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   556   e-156
gb|EYU19623.1| hypothetical protein MIMGU_mgv1a020453mg [Mimulus...   553   e-154
ref|XP_007161346.1| hypothetical protein PHAVU_001G061400g [Phas...   544   e-152
dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]     544   e-152
ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, part...   540   e-151
ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thal...   537   e-150

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  607 bits (1564), Expect = e-171
 Identities = 319/448 (71%), Positives = 360/448 (80%), Gaps = 2/448 (0%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            RA+K  KRV AVSTDEVS C+++LDY+EAAAKLENIYKLS   +VS+ ED          
Sbjct: 71   RASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAEDLERVVRRGRQ 130

Query: 1413 XXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRK--EREVVDSRLRNEENKGE 1240
                         K +S  V+R + +K KRLS++KRI L K  + + V S  +  ++K E
Sbjct: 131  RRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVASIQKKRDSKNE 190

Query: 1239 NANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKDL 1060
            + N++ LVREYS+STDLVSLDWKKMKIPPVLP SEHAWLFKLMQPMK L +VK+ LQKDL
Sbjct: 191  DENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDL 250

Query: 1059 GREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRFQ 880
            GREPTDGELA A+ MS  QVRR +EVG+AARNKLIKHNLRLVLFVINKYF EF NGP+FQ
Sbjct: 251  GREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQ 310

Query: 879  DLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLEI 700
            DLCQAGVKGLITAIDRFEPKR FRLSTYG+FWIRHAI RSMT+SSFTRVSFGLESVR+EI
Sbjct: 311  DLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEI 370

Query: 699  QRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGIT 520
            QRAKLEL F+L R PTEEEII+KVGISPERY EV RASK VLSLHARHATTQEEYINGIT
Sbjct: 371  QRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEYINGIT 430

Query: 519  DIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 340
            D++ V GD+ +Q               +PKESLV+RQRYGLDGKGDRTLGEIAGNL+ISR
Sbjct: 431  DVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISR 490

Query: 339  EMVRKHEVKALMKLKHPARVDYLRRYIF 256
            EMVRKHEVKALMKLKHPARVDYLR+YIF
Sbjct: 491  EMVRKHEVKALMKLKHPARVDYLRQYIF 518


>ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|590673674|ref|XP_007038960.1| Sigma factor E isoform 1
            [Theobroma cacao] gi|508776204|gb|EOY23460.1| Sigma
            factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  600 bits (1547), Expect = e-169
 Identities = 313/447 (70%), Positives = 351/447 (78%), Gaps = 2/447 (0%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            +A K PK VN V TD+ S C L++DY+EAAAKLENIYKLS     SDVE+          
Sbjct: 69   KAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEEVEGKIKGRRQ 128

Query: 1413 XXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRKEREV--VDSRLRNEENKGE 1240
                               V+RN   ++KRLS+D RI L+K RE   V S  R + ++ E
Sbjct: 129  RRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSVRRKKSSENE 188

Query: 1239 NANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKDL 1060
            +  ++RLVR+YS+STDLVSLDW+KMKIPPVLPS EH WLFKLMQPMKAL Q KE LQKDL
Sbjct: 189  SEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQAKENLQKDL 248

Query: 1059 GREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRFQ 880
            GR+PT+ ELA A +MS +QVR+ +EVG+AARNKLIKHNLRLVLF INKYF +F NGPRFQ
Sbjct: 249  GRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQDFANGPRFQ 308

Query: 879  DLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLEI 700
            DLCQAGVKGLITAIDRFEP+RRFRLSTY +FWIRHAI RSMT+SSFTRVSFGLESVR+EI
Sbjct: 309  DLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFGLESVRVEI 368

Query: 699  QRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGIT 520
            QRAKLEL FEL REPTEEEIIKKVGISPERYQEV RASKPV SLH+RH+ TQEE+INGIT
Sbjct: 369  QRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVTQEEFINGIT 428

Query: 519  DIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 340
            DID V GD R+QP              +PKESLVIRQRYGLDGKGDRTLGEIAGNLNISR
Sbjct: 429  DIDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 488

Query: 339  EMVRKHEVKALMKLKHPARVDYLRRYI 259
            EMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 489  EMVRKHEVKALMKLKHPARVDYLRRYV 515


>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  583 bits (1504), Expect = e-164
 Identities = 307/450 (68%), Positives = 353/450 (78%), Gaps = 5/450 (1%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREV-SDVEDXXXXXXXXX 1417
            +A K  K V + +TD  S C L++DY+EAAAKLEN+YK S   E  SDVED         
Sbjct: 69   KARKLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDVDGLMRRGR 128

Query: 1416 XXXXXXXXXXXXXXK-RLSSKVIRNNREKVKRLSIDKRIELR--KEREVVDSRLRNEEN- 1249
                          + R S+ V+RN  +K KRLS++KR+ L+  K+ +V+ S +R  ++ 
Sbjct: 129  KRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISSIVRKRKSR 188

Query: 1248 KGENANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQ 1069
            K EN  +E LVREYS+STDLVSLDWKKMKIPPVL SSEHAWLFKLMQPMK L +VKE LQ
Sbjct: 189  KNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGLLEVKENLQ 248

Query: 1068 KDLGREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGP 889
            KDLGREPT+GELA A +MSV QV++ +EVGRAAR+KLIKHNLRLVLFV+NKYF +F NGP
Sbjct: 249  KDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKYFQDFANGP 308

Query: 888  RFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVR 709
            +FQDLCQAGVKGLITAIDRFEPKR FRLSTYG+FWIRHAI RSMT+SSFTRVSFGLESVR
Sbjct: 309  KFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVR 368

Query: 708  LEIQRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYIN 529
             EIQ+AKL + F L R PTE+EII+KVGISPERY EV RASKPV SLH+RH TTQEE+IN
Sbjct: 369  AEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHTTTQEEFIN 428

Query: 528  GITDIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLN 349
            GITD+D V GD R++P              +PKESLVIRQRYGLDGKGDRTLGEIAGNLN
Sbjct: 429  GITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLN 488

Query: 348  ISREMVRKHEVKALMKLKHPARVDYLRRYI 259
            ISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 489  ISREMVRKHEVKALMKLKHPARVDYLRRYV 518


>gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 517

 Score =  583 bits (1503), Expect = e-164
 Identities = 307/449 (68%), Positives = 353/449 (78%), Gaps = 4/449 (0%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            +A KS  RV AV+TDE S+  +++DY+EAAAKLENI+KLSS  +V D             
Sbjct: 70   KAKKSSNRVKAVATDEASTSTMEVDYNEAAAKLENIFKLSSA-DVEDAVGLTSRGRRRRS 128

Query: 1413 XXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRKERE----VVDSRLRNEENK 1246
                            S  V+RN ++K KRLS+ KR+EL++++E    VV  R R E + 
Sbjct: 129  KVIGESDERAGKKSTTSDTVVRNRKKKAKRLSLHKRVELKRDKEENVAVVLVRKRRE-SL 187

Query: 1245 GENANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQK 1066
             E   +E+LVREYS+STDLVSLDWKKMKIPPVLPSSEH WLFKLMQP+K LFQV E LQK
Sbjct: 188  NEEEKIEKLVREYSASTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPLKQLFQVGEDLQK 247

Query: 1065 DLGREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPR 886
             LGREPT+ ELA A ++SV QV+R +E GRAARNKLIKHNLRLVLFV+NKYF +F NGP+
Sbjct: 248  TLGREPTENELAEATNISVVQVKRHLEAGRAARNKLIKHNLRLVLFVMNKYFQDFTNGPK 307

Query: 885  FQDLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRL 706
            FQDLCQAGV+GLITAIDRFEPKRRFRLSTYG+FWIRHAI RSMTVSSFTRVSFGLESVR 
Sbjct: 308  FQDLCQAGVRGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVSFGLESVRA 367

Query: 705  EIQRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYING 526
            EIQ+AK+EL+FEL R PTEEEII+KVGISPERY EV RASKPV+SL++RH TTQEE+IN 
Sbjct: 368  EIQKAKIELTFELKRLPTEEEIIEKVGISPERYHEVMRASKPVISLNSRHVTTQEEFINA 427

Query: 525  ITDIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 346
            ITD+D V GD R++P              +PKESLVIRQRYGLDGKGDRTLGEIAGNLNI
Sbjct: 428  ITDVDGVDGDDRRKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 487

Query: 345  SREMVRKHEVKALMKLKHPARVDYLRRYI 259
            SREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 488  SREMVRKHEVKALMKLKHPARVDYLRRYM 516


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Fragaria vesca subsp.
            vesca]
          Length = 520

 Score =  579 bits (1492), Expect = e-162
 Identities = 305/450 (67%), Positives = 352/450 (78%), Gaps = 5/450 (1%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            +A K PK V A   +E  +C L+LDY+EAAAKLEN+YK S   E SDVE+          
Sbjct: 70   KARKLPKSVKAALIEEAPTCDLELDYNEAAAKLENLYKRSPETEASDVENVDGLMIKRGR 129

Query: 1413 XXXXXXXXXXXXXKRLSSK--VIRNNREKVKRLSIDKRIELR--KEREVVDSRLRNEENK 1246
                         ++ +S   V+R+  +K KRLS+DKR+ L+  K+ +V  S +R  ++K
Sbjct: 130  KRRKKISEVDDKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVAASVVRKRKDK 189

Query: 1245 -GENANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQ 1069
              EN  +E LVREYS+STDLVSLDWKKM+IPPVL SSEH WLFKLMQPMK L +VKEILQ
Sbjct: 190  RSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKGLLEVKEILQ 249

Query: 1068 KDLGREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGP 889
            KDLGREP  GELA A +M+V QV+R +EVGRAARNKLIKHNLRLVLFVINKYF +F NGP
Sbjct: 250  KDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDFANGP 309

Query: 888  RFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVR 709
            +FQDLCQAGVKGLITAIDRFEP+RRFRLSTYG+FWIRHAI RSMT+SSFTRVSFGLESVR
Sbjct: 310  KFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESVR 369

Query: 708  LEIQRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYIN 529
             EIQ+AKLE+  +L R PTE+EII+KVGISPERY EV RASKPV SL++RH+ TQEE+IN
Sbjct: 370  AEIQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRHSVTQEEFIN 429

Query: 528  GITDIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLN 349
            GITD+D V GD R++P              +PKESLVIRQRYGLDGKGDRTLGEIAGNLN
Sbjct: 430  GITDVDGVDGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLN 489

Query: 348  ISREMVRKHEVKALMKLKHPARVDYLRRYI 259
            ISREMVRKHEVKALMKLKHPARVDYLRRYI
Sbjct: 490  ISREMVRKHEVKALMKLKHPARVDYLRRYI 519


>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
            gi|567858878|ref|XP_006422122.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Citrus
            sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Citrus
            sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Citrus
            sinensis] gi|557523994|gb|ESR35361.1| hypothetical
            protein CICLE_v10004760mg [Citrus clementina]
            gi|557523995|gb|ESR35362.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
          Length = 513

 Score =  570 bits (1470), Expect = e-160
 Identities = 300/443 (67%), Positives = 341/443 (76%), Gaps = 1/443 (0%)
 Frame = -1

Query: 1584 KSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXXXXX 1405
            K  +RV  V +DE S C LD+DY+EAAAKLENIYKLS     S+V+              
Sbjct: 70   KRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYADGVVKRGRQRRK 129

Query: 1404 XXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRK-EREVVDSRLRNEENKGENANV 1228
                            V+RN  ++ KRLS+DKRIELRK E E V ++ R  ++K E+  +
Sbjct: 130  RIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKTRKTDSKDEHEKI 189

Query: 1227 ERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKDLGREP 1048
            E+LVREYS STDLVSLDWKKMKIPPVL S+EH WLFKLMQPMK   QVKE LQKDLGREP
Sbjct: 190  EKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQLQKDLGREP 249

Query: 1047 TDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRFQDLCQ 868
            TD ELA A +MS +QV++ +EVGRAARNKLIKHNLRLVLFVI KYF +F NGPRFQDLCQ
Sbjct: 250  TDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQ 309

Query: 867  AGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLEIQRAK 688
            AGVKGLITAIDRFEPKRRFRLSTYG+FWIRHAI RSMTVSSFTRV FGLESVR EIQRAK
Sbjct: 310  AGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAK 369

Query: 687  LELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGITDIDD 508
            LEL FEL R PT+EEII+ V ISPERY+EV +ASKP+LSLH+RH  TQEE+INGITD+D 
Sbjct: 370  LELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDG 429

Query: 507  VRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVR 328
            V  + ++QP              +PKESLVIRQR+GLDGKGDRTLGEIAGNLNISREMVR
Sbjct: 430  VENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVR 489

Query: 327  KHEVKALMKLKHPARVDYLRRYI 259
            KHEVK LMKLKHP RVDYLR+++
Sbjct: 490  KHEVKGLMKLKHPTRVDYLRQHM 512


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
            trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
            sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score =  567 bits (1462), Expect = e-159
 Identities = 301/447 (67%), Positives = 342/447 (76%), Gaps = 2/447 (0%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            ++ KS  R+ AV T EVS C L +DY+EAAAKLENIYKLS   + SDVED          
Sbjct: 68   KSKKSSNRLKAVRT-EVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDASGVIRRGRQ 126

Query: 1413 XXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELR--KEREVVDSRLRNEENKGE 1240
                          R    ++RN  +K KRLS++KRI LR   E ++V S  + ++ K E
Sbjct: 127  RKRKISEGDKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSAGKRKDRKNE 186

Query: 1239 NANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKDL 1060
            N  ++ LVREYS+STDLVSLDWKKMKIPPVL SSEH WLFKLMQPMKAL QVKE LQ++L
Sbjct: 187  NEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQVKEHLQENL 246

Query: 1059 GREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRFQ 880
            G EPTD ELA A +M V QVR++I VGRAARNKLIKHNLRLVLFVI KYF +F NG +FQ
Sbjct: 247  GGEPTDVELAKATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQDFANGTKFQ 306

Query: 879  DLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLEI 700
            D CQAGVKGLITAIDRFEPKRRFRLSTYG+FWIRHAI RSMT+SSFTRVSFGLES+R EI
Sbjct: 307  DFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESIRSEI 366

Query: 699  QRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGIT 520
            Q+AKLEL F+L R+P E+EII+KV ISPERY EV RASKPVLSLH+RH TTQEE+I GI 
Sbjct: 367  QKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQEEFIGGIA 426

Query: 519  DIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 340
            D+D   GD R+Q               +PKESLV+RQRYGLDGKGDRTLGEIAGNLNISR
Sbjct: 427  DVDG--GDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISR 484

Query: 339  EMVRKHEVKALMKLKHPARVDYLRRYI 259
            EMVRKHEVKALMKLKHP RVDYLRRY+
Sbjct: 485  EMVRKHEVKALMKLKHPTRVDYLRRYV 511


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  567 bits (1462), Expect = e-159
 Identities = 299/445 (67%), Positives = 345/445 (77%), Gaps = 2/445 (0%)
 Frame = -1

Query: 1587 TKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXXXX 1408
            T   K+    +  EVSS  L++DY+EAAAKLENIYKLS   + SDV D            
Sbjct: 59   TSKGKKRRGKTNREVSSGTLEVDYNEAAAKLENIYKLSPATDTSDV-DINGLIRKGRQRK 117

Query: 1407 XXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRK--EREVVDSRLRNEENKGENA 1234
                        R S  ++RN  +K KRLS+DKRI L+K  E EVV    + +++K +N 
Sbjct: 118  RKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIRKKKDSKDDNE 177

Query: 1233 NVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKDLGR 1054
             +E LVR YS+ST+LVSLDW+KMKIPPVLPS+EHAWLFKLMQPMK L  VK  LQK+LGR
Sbjct: 178  KIEELVRTYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPVKADLQKNLGR 237

Query: 1053 EPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRFQDL 874
            +PTDGELA A +M+V +VR+++EVGRAARNKLIKHNLRLV+FV+NKYF +F NGPRFQDL
Sbjct: 238  DPTDGELAEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQDFANGPRFQDL 297

Query: 873  CQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLEIQR 694
            CQAGVKGLITAIDRFEP+RRF+LSTY +FWIRHAI RSMT+SSFT+VSFGLESVR EIQ+
Sbjct: 298  CQAGVKGLITAIDRFEPQRRFQLSTYSLFWIRHAIIRSMTLSSFTKVSFGLESVRTEIQK 357

Query: 693  AKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGITDI 514
            AKLEL  EL R PTEEEII++VGIS ERY EV RA+KP LSLHARHA TQEE+INGITDI
Sbjct: 358  AKLELLIELQRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQEEFINGITDI 417

Query: 513  DDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREM 334
            D   GD R+QP              +PKESLVIRQRYGLDGKGDRTLGEIAGNLNISREM
Sbjct: 418  DG--GDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREM 475

Query: 333  VRKHEVKALMKLKHPARVDYLRRYI 259
            VRK+EVKALMKLKHPARVDYLRRY+
Sbjct: 476  VRKYEVKALMKLKHPARVDYLRRYV 500


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  566 bits (1459), Expect = e-159
 Identities = 297/449 (66%), Positives = 343/449 (76%), Gaps = 3/449 (0%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            R +K  +RV+AV+  E S   L+LDYSEAAAKLE+IYK S     S+ E           
Sbjct: 69   RVSKRSERVHAVAI-EASPSTLELDYSEAAAKLESIYKRSLETASSNTEVQDHLVKRRPR 127

Query: 1413 XXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRKERE---VVDSRLRNEENKG 1243
                         K ++  V++N R+  KRL++D+RI L K +E   V  S  R  +   
Sbjct: 128  TRKRIVEGDEEAKKEVADNVVKNRRKTSKRLNLDQRIALLKNKEGEMVASSERRKLKEDT 187

Query: 1242 ENANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKD 1063
            E+  +++LVREYS +TDL SLDWKKMKIPPVLPSSEH WLFKLMQPMKA+ QVKE LQ D
Sbjct: 188  EDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQVKENLQND 247

Query: 1062 LGREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRF 883
            LGREPTDGE+A A +M  S++R+K+EVGRAARNKLIKHNLRLVLFV+NKYF +F NG RF
Sbjct: 248  LGREPTDGEVAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQDFANGSRF 307

Query: 882  QDLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLE 703
            QDLCQAGVKGLITAIDRFEP R+FRLSTYG+FWIRHAI RSMT SSFT+V FGLES+R+E
Sbjct: 308  QDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVE 367

Query: 702  IQRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGI 523
            IQ+AKLEL FEL R PT+EEII++VG+SPERY EV + SKPV SLHAR+ TTQEE INGI
Sbjct: 368  IQKAKLELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNKTTQEELINGI 427

Query: 522  TDIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNIS 343
            TD+D V GDKRKQP              +PKESLVIRQRYGLDGKGDRTLGEIAGNLNIS
Sbjct: 428  TDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNIS 487

Query: 342  REMVRKHEVKALMKLKHPARVDYLRRYIF 256
            REMVRKHEVKALMKLKHP RVDY+RRYIF
Sbjct: 488  REMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score =  562 bits (1449), Expect = e-157
 Identities = 300/451 (66%), Positives = 345/451 (76%), Gaps = 8/451 (1%)
 Frame = -1

Query: 1587 TKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXXXX 1408
            +K  KRV AV  DE + C+LDLDY+EAAAKLENI+KLS   E SD E             
Sbjct: 71   SKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKE-------CKDGRS 123

Query: 1407 XXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELR--------KEREVVDSRLRNEE 1252
                        R    ++RN  +++KRL +DKRI L+        KE + V S  + +E
Sbjct: 124  KRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKRKAKRNKEGKAVPSLRKQKE 183

Query: 1251 NKGENANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEIL 1072
             K E+  ++RLVR+YS+STDLVSLDWKKMKIPPVLPSSEH  LFKL+QPMKAL +V+E L
Sbjct: 184  TKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEEL 243

Query: 1071 QKDLGREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNG 892
            QK LGREPT+GELA A +M+V QVRR++EVGRAARNKLIKHNLRLVLFVINKYF +F +G
Sbjct: 244  QKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASG 303

Query: 891  PRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESV 712
            P+FQDLCQAGVKGLITAIDRFEPKR+FRLSTY +FWIRHAI RSMT+SSFTRVSFGL+SV
Sbjct: 304  PKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV 363

Query: 711  RLEIQRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYI 532
            R+EIQRAKLEL  EL R PTE EI  KVGIS ERY EV RA+KPV SLH+RH+TT EE I
Sbjct: 364  RVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELI 423

Query: 531  NGITDIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNL 352
            NGITD++   GD R+QP              +PKESLVIRQRYGLDGKG+RTLGEIAGNL
Sbjct: 424  NGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNL 483

Query: 351  NISREMVRKHEVKALMKLKHPARVDYLRRYI 259
            NISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 484  NISREMVRKHEVKALMKLKHPARVDYLRRYL 514


>ref|XP_006593758.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Glycine max]
          Length = 488

 Score =  561 bits (1445), Expect = e-157
 Identities = 292/447 (65%), Positives = 343/447 (76%), Gaps = 2/447 (0%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            + ++S KRV AVST E S C LD+DY+EAAAKLENIYKLS   +  +VED          
Sbjct: 45   KTSESLKRVRAVSTVETSPCTLDVDYNEAAAKLENIYKLSPVSDTCNVEDIDSKIERVLR 104

Query: 1413 XXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRK--EREVVDSRLRNEENKGE 1240
                               V+RN  +K KRLS+DKRI L+   + EV+D   +    K  
Sbjct: 105  RRKKVSEERDDGNC---DNVVRNQNKKAKRLSLDKRIALKNNAKEEVIDQTQKKRNVKNR 161

Query: 1239 NANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKDL 1060
              N++ L+R+YS+STDLVS+DWKKMKIPPVLPSSEHAWLFKLMQPMKAL Q KE L K++
Sbjct: 162  VQNIDVLIRDYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQAKEDL-KEV 220

Query: 1059 GREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRFQ 880
             +E T GELA A +MS+ QVR+ IEVGRAARNKLIKHNLRLVLFVINKYF +F +GPRFQ
Sbjct: 221  DKEITGGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVINKYFQDFASGPRFQ 280

Query: 879  DLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLEI 700
            DLCQAGVKGLITAIDRFEPKRR +LSTY +FWIRH+I RS+T+SSFTRV FGLE VR++I
Sbjct: 281  DLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLERVRVDI 340

Query: 699  QRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGIT 520
            QR KL+L+FEL R PTEEE+++++GIS ERY EV +ASKP+LSLH+RH TTQEEYINGIT
Sbjct: 341  QRTKLKLTFELQRSPTEEELVERIGISLERYHEVMKASKPILSLHSRHITTQEEYINGIT 400

Query: 519  DIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 340
            D+D V GD R+Q               +PKESLVIRQRYGLDGKGDRTLGEIAGNLNISR
Sbjct: 401  DVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 460

Query: 339  EMVRKHEVKALMKLKHPARVDYLRRYI 259
            E+VRKHEVKALMKLKHPAR+DYLRRY+
Sbjct: 461  EIVRKHEVKALMKLKHPARLDYLRRYV 487


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Glycine max]
            gi|571496981|ref|XP_006593757.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
          Length = 512

 Score =  561 bits (1445), Expect = e-157
 Identities = 292/447 (65%), Positives = 343/447 (76%), Gaps = 2/447 (0%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            + ++S KRV AVST E S C LD+DY+EAAAKLENIYKLS   +  +VED          
Sbjct: 69   KTSESLKRVRAVSTVETSPCTLDVDYNEAAAKLENIYKLSPVSDTCNVEDIDSKIERVLR 128

Query: 1413 XXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRK--EREVVDSRLRNEENKGE 1240
                               V+RN  +K KRLS+DKRI L+   + EV+D   +    K  
Sbjct: 129  RRKKVSEERDDGNC---DNVVRNQNKKAKRLSLDKRIALKNNAKEEVIDQTQKKRNVKNR 185

Query: 1239 NANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKDL 1060
              N++ L+R+YS+STDLVS+DWKKMKIPPVLPSSEHAWLFKLMQPMKAL Q KE L K++
Sbjct: 186  VQNIDVLIRDYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQAKEDL-KEV 244

Query: 1059 GREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRFQ 880
             +E T GELA A +MS+ QVR+ IEVGRAARNKLIKHNLRLVLFVINKYF +F +GPRFQ
Sbjct: 245  DKEITGGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVINKYFQDFASGPRFQ 304

Query: 879  DLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLEI 700
            DLCQAGVKGLITAIDRFEPKRR +LSTY +FWIRH+I RS+T+SSFTRV FGLE VR++I
Sbjct: 305  DLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLERVRVDI 364

Query: 699  QRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGIT 520
            QR KL+L+FEL R PTEEE+++++GIS ERY EV +ASKP+LSLH+RH TTQEEYINGIT
Sbjct: 365  QRTKLKLTFELQRSPTEEELVERIGISLERYHEVMKASKPILSLHSRHITTQEEYINGIT 424

Query: 519  DIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 340
            D+D V GD R+Q               +PKESLVIRQRYGLDGKGDRTLGEIAGNLNISR
Sbjct: 425  DVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 484

Query: 339  EMVRKHEVKALMKLKHPARVDYLRRYI 259
            E+VRKHEVKALMKLKHPAR+DYLRRY+
Sbjct: 485  EIVRKHEVKALMKLKHPARLDYLRRYV 511


>ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glycine max]
            gi|382365028|dbj|BAM05477.1| sigma-like factor 5A
            [Glycine max]
          Length = 512

 Score =  559 bits (1440), Expect = e-156
 Identities = 294/449 (65%), Positives = 349/449 (77%), Gaps = 4/449 (0%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            + ++S KRV AVS  E S C LD+DY+EAAAKLENIYKLS   +  ++ED          
Sbjct: 69   KTSESLKRVRAVSIVETSPCTLDMDYNEAAAKLENIYKLSPVSDTCNMEDIDSKVERVLW 128

Query: 1413 XXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRK--EREVVDS--RLRNEENK 1246
                           +   V+RN  +K KRLS+DKRI L+   + EV+D   ++RN +N+
Sbjct: 129  RRRKVGNEHDDENCDI---VVRNQNKKAKRLSLDKRITLKNNAKEEVIDQTQKIRNVKNR 185

Query: 1245 GENANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQK 1066
             +N +V  L+R+YS+STDLVS+DWKKMKIP VLPSSEHAWLFKLMQPMKAL Q KE LQ 
Sbjct: 186  VQNIDV--LIRDYSASTDLVSMDWKKMKIPAVLPSSEHAWLFKLMQPMKALLQAKEDLQS 243

Query: 1065 DLGREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPR 886
             +G+E TDGELA A +MS+ QVR+ IEVGRAARNKLIKHNLRLVLFVI+KYF +F +G R
Sbjct: 244  -VGKEITDGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVISKYFQDFASGRR 302

Query: 885  FQDLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRL 706
            FQDLCQAGVKGLITAIDRFEPKRR +LSTY +FWIRH+I RS+T+SSFTRV FGLE VR+
Sbjct: 303  FQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLERVRV 362

Query: 705  EIQRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYING 526
            +IQR KL+L+FEL R PTEEE+++++GISPERY EV +ASKP+LSLH+RH TTQEEYING
Sbjct: 363  DIQRTKLKLTFELQRSPTEEELVERIGISPERYYEVMKASKPILSLHSRHITTQEEYING 422

Query: 525  ITDIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 346
            ITD+D V GD R+Q               +PKESLVIRQRYGLDGKGDRTLGEIAGNLNI
Sbjct: 423  ITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNI 482

Query: 345  SREMVRKHEVKALMKLKHPARVDYLRRYI 259
            SREMVRKHEVKALMKLKHPAR+DYLRRY+
Sbjct: 483  SREMVRKHEVKALMKLKHPARLDYLRRYV 511


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  556 bits (1434), Expect = e-156
 Identities = 297/450 (66%), Positives = 345/450 (76%), Gaps = 7/450 (1%)
 Frame = -1

Query: 1587 TKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXXXX 1408
            +K  KRV AV  DE + C+LDLDY+EAAAKLENI+KLS   E SD E             
Sbjct: 71   SKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKE-------CKDGRS 123

Query: 1407 XXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRKEREVVDSRL-------RNEEN 1249
                        R    ++RN  +++KRL +DKRI L+ ++E     L       +NE +
Sbjct: 124  KRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEAD 183

Query: 1248 KGENANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQ 1069
            + ++  ++RLVR+YS+STDLVSLDWKKMKIPPVLPSSEH  LFKL+QPMKAL +V+E LQ
Sbjct: 184  EIDDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQ 243

Query: 1068 KDLGREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGP 889
            K LGREPT+GELA A +M+V QVRR++EVGRAARNKLIKHNLRLVLFVINKYF +F +GP
Sbjct: 244  KGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGP 303

Query: 888  RFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVR 709
            +FQDLCQAGVKGLITAIDRFEPKR+FRLSTY +FWIRHAI RSMT+SSFTRVSFGL+SVR
Sbjct: 304  KFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVR 363

Query: 708  LEIQRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYIN 529
            +EIQRAKLEL  EL R PTE EI  KVGIS ERY EV RA+KPV SLH+RH+TT EE IN
Sbjct: 364  VEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELIN 423

Query: 528  GITDIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLN 349
            GITD++   GD R+QP              +PKESLVIRQRYGLDGKG+RTLGEIAGNLN
Sbjct: 424  GITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLN 483

Query: 348  ISREMVRKHEVKALMKLKHPARVDYLRRYI 259
            ISREMVRKHEVKALMKLKHPARVDYLRRY+
Sbjct: 484  ISREMVRKHEVKALMKLKHPARVDYLRRYL 513


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform 1 [Solanum
            lycopersicum]
          Length = 516

 Score =  556 bits (1433), Expect = e-156
 Identities = 292/449 (65%), Positives = 336/449 (74%), Gaps = 3/449 (0%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            R +K  +RV+AV T E     L+LDYSEAAAKLE+IYK S      + E           
Sbjct: 69   RVSKRTERVHAV-TIEAPPSTLELDYSEAAAKLESIYKRSLETASPNTEVKDHLVKRRPR 127

Query: 1413 XXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRKERE---VVDSRLRNEENKG 1243
                         K +   V++N R+K KRL++D+RI L K +E   +  S  R      
Sbjct: 128  TRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKMLASSERRKLNEDT 187

Query: 1242 ENANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKD 1063
            E+  +++LVREYS +TDL SLDWKKMKIPPVLPSSEH WLFKLMQPMKA+ QVKE LQ D
Sbjct: 188  EDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQVKENLQND 247

Query: 1062 LGREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRF 883
            LGREPTDGE+A A +M  S++R+K+E GRAARNKLIKHNLRLVLFV+NKYF +F N  RF
Sbjct: 248  LGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQDFANASRF 307

Query: 882  QDLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLE 703
            QDLCQAGVKGLITAIDRFEP R+FRLSTYG+FWIRHAI R MT SSFT+V FGLES+R+E
Sbjct: 308  QDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPFGLESIRVE 367

Query: 702  IQRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGI 523
            IQ+AKLEL FEL R PT++EIIK+VG SPERY EV + SKP+ SLHAR+ TTQEE INGI
Sbjct: 368  IQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTTQEELINGI 427

Query: 522  TDIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNIS 343
            TD+D V GDKRKQP              +PKESLVIRQRYGLDGKGDRTLGEIAGNLNIS
Sbjct: 428  TDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNIS 487

Query: 342  REMVRKHEVKALMKLKHPARVDYLRRYIF 256
            REMVRKHEVKALMKLKHP RVDY+RRYIF
Sbjct: 488  REMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>gb|EYU19623.1| hypothetical protein MIMGU_mgv1a020453mg [Mimulus guttatus]
          Length = 515

 Score =  553 bits (1424), Expect = e-154
 Identities = 283/451 (62%), Positives = 347/451 (76%), Gaps = 5/451 (1%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVS--DVEDXXXXXXXX 1420
            +  K  +RVNAVSTDE     +DLDY+EAAAKLE I+K S   E+S  +V+D        
Sbjct: 69   KVKKRAERVNAVSTDEAPPSTIDLDYNEAAAKLEYIFKQSPTVEISVDEVKDVRVKRRQP 128

Query: 1419 XXXXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRKEREVVDSRLRNEENKGE 1240
                            +++  V+R+ R K +RL+++KRI LR ++E   + +      G+
Sbjct: 129  RKRTEYADEAE-----KIADNVVRSRRSKDRRLNLEKRIALRTKKEDESTAIFQRRKTGK 183

Query: 1239 N---ANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQ 1069
            N     ++RLVR+YS+S+DLVSLDWKKMKIPPVLPS+EH WLFKLMQP+KA+  VKE ++
Sbjct: 184  NDEDEKIDRLVRDYSASSDLVSLDWKKMKIPPVLPSAEHVWLFKLMQPVKAILDVKETIE 243

Query: 1068 KDLGREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGP 889
             +LGREPTD +LA A++M   Q+R+++E+GRAARNKLIKHNLRLVLFV+NKYF +F NG 
Sbjct: 244  NNLGREPTDEKLATAINMDTVQLRKQLEIGRAARNKLIKHNLRLVLFVMNKYFQDFSNGS 303

Query: 888  RFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVR 709
            RFQDLCQAG KGLITAIDRFEPKR+ RLSTYG+FWIRH+I RSMT+SSFT+VSFGLESVR
Sbjct: 304  RFQDLCQAGAKGLITAIDRFEPKRKLRLSTYGLFWIRHSIIRSMTLSSFTKVSFGLESVR 363

Query: 708  LEIQRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYIN 529
            +EI++AKLEL FEL R PT+EEI+ +VGIS ERY EV R SKP++SLHARH+ TQEE+IN
Sbjct: 364  VEIRKAKLELMFELKRLPTDEEIVGRVGISQERYHEVMRVSKPIISLHARHSVTQEEFIN 423

Query: 528  GITDIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLN 349
            GITD+D V GD+RKQP              +PKE+LVIRQRYGLDGKGDRTLGEIAGNLN
Sbjct: 424  GITDVDGVEGDRRKQPALLRLALDDVLDSLKPKENLVIRQRYGLDGKGDRTLGEIAGNLN 483

Query: 348  ISREMVRKHEVKALMKLKHPARVDYLRRYIF 256
            ISREMVRK+EVKALMKLKH ARVDYLRRY+F
Sbjct: 484  ISREMVRKYEVKALMKLKHRARVDYLRRYVF 514


>ref|XP_007161346.1| hypothetical protein PHAVU_001G061400g [Phaseolus vulgaris]
            gi|561034810|gb|ESW33340.1| hypothetical protein
            PHAVU_001G061400g [Phaseolus vulgaris]
          Length = 511

 Score =  544 bits (1402), Expect = e-152
 Identities = 284/448 (63%), Positives = 342/448 (76%), Gaps = 3/448 (0%)
 Frame = -1

Query: 1593 RATKSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXX 1414
            +   S KRV AVSTDE +   LD+DY+EAAAKLENIYKLSS     D ED          
Sbjct: 69   KTNDSVKRVRAVSTDETTPFTLDVDYNEAAAKLENIYKLSSVSSTCDTEDIDSKTKRVLR 128

Query: 1413 XXXXXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELR---KEREVVDSRLRNEENKG 1243
                          R    V+RN  +K KRLS+DKRI L+   K+  +V ++ + + N+ 
Sbjct: 129  RRKNVGDEHDD---RNDGSVVRNQNKKAKRLSLDKRIALKRNPKQEVIVQAQKKRDVNRI 185

Query: 1242 ENANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKD 1063
            EN  ++ L+REYS+STDLVS+DWKK+KIPPVLPSSEHAWLFKLM+PMK L QV+E LQ +
Sbjct: 186  EN--IDALIREYSASTDLVSMDWKKIKIPPVLPSSEHAWLFKLMEPMKELLQVREDLQ-E 242

Query: 1062 LGREPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRF 883
            +G+E +DGELA A  +SV QVR+ +EVG+AARNKLIKHNLRLVLFVINKYF +F +GPRF
Sbjct: 243  VGKEISDGELADANSISVIQVRKALEVGQAARNKLIKHNLRLVLFVINKYFQDFASGPRF 302

Query: 882  QDLCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLE 703
            QDLCQAGVKGLITAIDRFE KRR +LSTY +FWIRH+I RS+T+SS TRV FGL+ VR +
Sbjct: 303  QDLCQAGVKGLITAIDRFESKRRLQLSTYSLFWIRHSIVRSITLSSLTRVPFGLDRVRAD 362

Query: 702  IQRAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGI 523
            I RAKLEL FEL R PTE+E+++++GISPERY +V +ASKP++SLH+RH  TQEE+INGI
Sbjct: 363  IHRAKLELRFELQRSPTEKEVVERIGISPERYYDVLKASKPIISLHSRHIVTQEEFINGI 422

Query: 522  TDIDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNIS 343
            TD+D V GD R+Q               +PKESLV+RQRYGLDGKGDRTLGEIAGNLNIS
Sbjct: 423  TDLDGVDGDNRRQLAVLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLNIS 482

Query: 342  REMVRKHEVKALMKLKHPARVDYLRRYI 259
            REMVRKHEVKALMKLKHPAR+DYLRRY+
Sbjct: 483  REMVRKHEVKALMKLKHPARLDYLRRYV 510


>dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]
          Length = 511

 Score =  544 bits (1401), Expect = e-152
 Identities = 282/446 (63%), Positives = 342/446 (76%), Gaps = 4/446 (0%)
 Frame = -1

Query: 1584 KSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXXXXX 1405
            K+PK+ +++  +   SC+L +DY+EAAA+LE+IYKLS    V D  D             
Sbjct: 73   KTPKKPSSLDHNLAPSCSLGVDYNEAAARLESIYKLSPATSVEDDIDGSKVKVSRRRRRK 132

Query: 1404 XXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRK---EREVVDSRLRNEENK-GEN 1237
                            V+RNN  K KRLS+DKRI L++   E+ +V S  +    K  E 
Sbjct: 133  EGGEE--------KKVVVRNNGMKEKRLSLDKRIALKRNIQEKPLVPSAQKKVTKKQQEE 184

Query: 1236 ANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKDLG 1057
              +ERLVR+YS+S D+VSLDWKKMKIPPVLPS+EHAWLFKLMQPMKAL QVK+ LQK LG
Sbjct: 185  EKIERLVRDYSASHDIVSLDWKKMKIPPVLPSTEHAWLFKLMQPMKALLQVKDELQKSLG 244

Query: 1056 REPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRFQD 877
            REP + E+A  ++MS ++V+RKIE+GRAARNKLIKHNLRLVLFV+NKYF +F NGP+FQD
Sbjct: 245  REPRETEIAGEINMSAAEVKRKIEIGRAARNKLIKHNLRLVLFVMNKYFQDFTNGPKFQD 304

Query: 876  LCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLEIQ 697
            LCQAG++GLITAIDRFEPKR+FRLSTYG+FWIRHAI RSMT S+FTRV FGLESVR+EI 
Sbjct: 305  LCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIY 364

Query: 696  RAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGITD 517
            + K+EL FELGR PTE+E+++++ ISPERY+EV RA+KPV SL+++H+ TQEE+INGITD
Sbjct: 365  KTKMELLFELGRLPTEDEVVERLKISPERYREVLRAAKPVFSLNSKHSVTQEEFINGITD 424

Query: 516  IDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE 337
            +D V  D R+QP              +PKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE
Sbjct: 425  VDGVGADNRRQPAILRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE 484

Query: 336  MVRKHEVKALMKLKHPARVDYLRRYI 259
            MVRKHEVKALMKLKH ARVDYLR+YI
Sbjct: 485  MVRKHEVKALMKLKHQARVDYLRQYI 510


>ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, partial [Capsella rubella]
            gi|482556108|gb|EOA20300.1| hypothetical protein
            CARUB_v10000608mg, partial [Capsella rubella]
          Length = 557

 Score =  540 bits (1392), Expect = e-151
 Identities = 278/446 (62%), Positives = 339/446 (76%), Gaps = 4/446 (0%)
 Frame = -1

Query: 1584 KSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXXXXX 1405
            K+PK+ +++  +   SC+L +DY+EAAA+LENIYKLS    +SD E              
Sbjct: 115  KTPKKPSSLDHNVAPSCSLGVDYNEAAARLENIYKLSPTTTISDDE----AVDDGGSKGK 170

Query: 1404 XXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRKERE----VVDSRLRNEENKGEN 1237
                            V+RNN +K KRLS+DKRI L++  +    V  +  +  + + E 
Sbjct: 171  VSPRRKRKQRGEEKKVVVRNNVKKDKRLSLDKRIALKRNCQEKPFVASAEKKVTKKQQEE 230

Query: 1236 ANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKDLG 1057
              ++ LVR+YS S D++SLDWKKMKIPPVL S+EHAWLFKLMQPMKAL +VK+ LQK LG
Sbjct: 231  EKIDMLVRDYSVSNDILSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDELQKSLG 290

Query: 1056 REPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRFQD 877
            REP + E+A  + M+  +V++KIE+GRAARNKLIKHNLRLVLFV+NKYF EF NGP+FQD
Sbjct: 291  REPREAEIAGEIKMTTGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFQEFTNGPKFQD 350

Query: 876  LCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLEIQ 697
            LCQAG+KGLITAIDRFEPKR+FRLSTYG+FWIRHAI RSMT S+FTRV FGLESVR+EI 
Sbjct: 351  LCQAGMKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIY 410

Query: 696  RAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGITD 517
            +AK+EL FELGR PTE+E+IK++ I+PERY+EV RA+KPV SL+++HA TQEE+INGITD
Sbjct: 411  KAKMELLFELGRLPTEDEVIKRLKITPERYREVLRAAKPVFSLNSKHAVTQEEFINGITD 470

Query: 516  IDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE 337
            +D V  D R+QP              +PKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE
Sbjct: 471  VDGVGADNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE 530

Query: 336  MVRKHEVKALMKLKHPARVDYLRRYI 259
            MVRKHEVKALMKLKH ARVDYLR+YI
Sbjct: 531  MVRKHEVKALMKLKHQARVDYLRQYI 556


>ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thaliana]
            gi|75267675|sp|Q9ZNX9.1|SIGE_ARATH RecName: Full=RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial; Short=Sigma factor E;
            Short=Sigma-E; AltName: Full=RNA polymerase sigma factor
            sig5; Short=Atsig5; Short=Sigma factor 5; Flags:
            Precursor gi|4033838|emb|CAA77213.1| sigma-like factor
            [Arabidopsis thaliana] gi|4972299|dbj|BAA78109.1| RNA
            polymerase sigma subunit SigE [Arabidopsis thaliana]
            gi|10178160|dbj|BAB11572.1| sigma-like factor
            [Arabidopsis thaliana] gi|222423237|dbj|BAH19595.1|
            AT5G24120 [Arabidopsis thaliana]
            gi|332005876|gb|AED93259.1| RNA polymerase sigma factor 5
            [Arabidopsis thaliana]
          Length = 517

 Score =  537 bits (1383), Expect = e-150
 Identities = 278/446 (62%), Positives = 347/446 (77%), Gaps = 4/446 (0%)
 Frame = -1

Query: 1584 KSPKRVNAVSTDEVSSCALDLDYSEAAAKLENIYKLSSPREVSDVEDXXXXXXXXXXXXX 1405
            K+PK+  ++  +   SC+L +DY+EAAA+LE+IYKLS P   + VED             
Sbjct: 75   KTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLS-PATTTLVEDDVEDGGSKAKVSR 133

Query: 1404 XXXXXXXXXXKRLSSKVIRNNREKVKRLSIDKRIELRK---EREVVDSRLRN-EENKGEN 1237
                      K++   V+RNN +K KR+S+DKRI L++   E+ VV S  +   + + E 
Sbjct: 134  RRKRKESGEEKKV---VVRNNVKKEKRMSLDKRIALKRNVQEKPVVASVDKKVTKRQQEE 190

Query: 1236 ANVERLVREYSSSTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALFQVKEILQKDLG 1057
              +ERLVR+YS+S D+VSLDWKKMKIPPVL S+EHAWLFKLMQPMKAL +VK++LQK LG
Sbjct: 191  EKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLG 250

Query: 1056 REPTDGELAAAVDMSVSQVRRKIEVGRAARNKLIKHNLRLVLFVINKYFLEFGNGPRFQD 877
            REP + E+A  ++M+  +V++KIE+GRAARNKLIKHNLRLVLFV+NKYF EF NGP+FQD
Sbjct: 251  REPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQD 310

Query: 876  LCQAGVKGLITAIDRFEPKRRFRLSTYGVFWIRHAITRSMTVSSFTRVSFGLESVRLEIQ 697
            LCQAG++GLITAIDRFEPKR+FRLSTYG+FWIRHAI RSMT S+FTRV FGLESVR+EI 
Sbjct: 311  LCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIY 370

Query: 696  RAKLELSFELGREPTEEEIIKKVGISPERYQEVRRASKPVLSLHARHATTQEEYINGITD 517
            +AK EL FE+GR PTE+E+++++ I+PERY+EV RA+KPVLSL+++H+ TQEE+INGITD
Sbjct: 371  KAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITD 430

Query: 516  IDDVRGDKRKQPXXXXXXXXXXXXXXRPKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE 337
            +D V  +  +QP              +PKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE
Sbjct: 431  VDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISRE 490

Query: 336  MVRKHEVKALMKLKHPARVDYLRRYI 259
            MVRKHEVKALMKLKH ARVDYLR+YI
Sbjct: 491  MVRKHEVKALMKLKHQARVDYLRQYI 516