BLASTX nr result
ID: Cocculus23_contig00001579
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00001579
(5606 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 1982 0.0
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 1867 0.0
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 1859 0.0
ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, put... 1854 0.0
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun... 1842 0.0
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 1828 0.0
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 1822 0.0
ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, put... 1717 0.0
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 1650 0.0
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1625 0.0
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 1619 0.0
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 1616 0.0
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub... 1607 0.0
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1607 0.0
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub... 1603 0.0
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 1602 0.0
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps... 1602 0.0
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 1598 0.0
ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutr... 1597 0.0
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 1593 0.0
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 1982 bits (5134), Expect = 0.0
Identities = 1035/1826 (56%), Positives = 1275/1826 (69%), Gaps = 75/1826 (4%)
Frame = +1
Query: 49 TTTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPG 228
+T +DG I+ I+F LAT +EIC +S+SD PI+H++QLTNPFLGLPLE GKCE+CGTAEPG
Sbjct: 6 STILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCGTAEPG 65
Query: 229 QCDGHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSERTSNSPCSNCLDI 408
QC+GHFGYI LPIPIYHP H + T C D
Sbjct: 66 QCEGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNNGITEQLLAPCCQDS 125
Query: 409 PQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVLEILK 588
PQ+S++E +G+ +LELK PS+SR +DGFW+FL +YGYRYG R LLP EV+EIL+
Sbjct: 126 PQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSEVMEILR 185
Query: 589 RFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKKVLKQ 768
R PE+TRK+L KGYFPQDGYILQ LPVPPNCLSVPD+SDG SIMSSDLSVSMLKKVLKQ
Sbjct: 186 RIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSMLKKVLKQ 245
Query: 769 VDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADDSATR 948
+++IK SRSG P+FE+H IEAN+LQ ++ +YL +RG AK +++TRFG++KE ++S+T+
Sbjct: 246 IEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEPNESSTK 305
Query: 949 VWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKAHLQD 1128
WLEKMRTLFIRKGSGFSSRSV++GDAY+RV+EIGLP EIAQRITFEE+V N HLQ+
Sbjct: 306 AWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNMKHLQN 365
Query: 1129 LVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKHSLQA 1308
LVD+KLCLTY+DG STYSLREGSKGHTFLR GQ+VHRRIMDGDIVFINR P+THKHSLQA
Sbjct: 366 LVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQA 425
Query: 1309 FSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLSSHSA 1488
S+YVH DHTVKINPLICGP ADFDGDCV L+YPQSL AKAE LELFSVE+QLLSSHS
Sbjct: 426 LSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSG 485
Query: 1489 NLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTALQIL 1668
NLNLQL D+LLSLK++F+ +F NKA AQQLVM VS L PA+LK +G WTALQIL
Sbjct: 486 NLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQIL 545
Query: 1669 QCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVFNSLQ 1848
Q ALPS DC G+R I +S IL++D+NRD+LQSL NEI++S+F +KG E L F+SLQ
Sbjct: 546 QTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQ 605
Query: 1849 PLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLDNQLK 2028
PLLMEN+F EG S++L+DF IP V ++IQ NV+ +S LL +RS Y+ELL++Q +N L+
Sbjct: 606 PLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHLR 665
Query: 2029 SVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDDMTSL 2208
K+PV NFIL SAL +LID+KS+S+I KVVQQ+GF+G QLS++GKFYSRTLV+ M L
Sbjct: 666 LTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYL 725
Query: 2209 FHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGTLFKN 2388
F KY +G D PS FGLI SC F+GLDPYE MVHSIS+RE++VRSSRGL+EPGTLFKN
Sbjct: 726 FKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKN 785
Query: 2389 LMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAISNPAY 2568
LMAILRDV+ICYDGTVRNVCSN +IQFEYG KA T +PAGE VGVLAATA+SNPAY
Sbjct: 786 LMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAY 845
Query: 2569 KAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAYIVWN 2748
KAVLDS+PSSN SWELMKE+LLC+VNFKND+ DRRVILYLNDC CG++YC+ENAAY+V N
Sbjct: 846 KAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKN 905
Query: 2749 RLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVLLKCQ 2928
+LK+ SLKD AV F+IEY KQ SS LVGHIH +K L+DLN+SM EV KC+
Sbjct: 906 QLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKCE 965
Query: 2929 ETISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDALEKI 3108
ETI++ RKKK +G F KKI LS ECC FQ SC S+ +PCL F W D LE+I
Sbjct: 966 ETINSFRKKKN--VGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQI 1023
Query: 3109 SLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXXXXXX 3288
I+A+ ICPVLL+T++KGD RV T NIIW+SPD +TW+RNP ++RKGE
Sbjct: 1024 LHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAA 1083
Query: 3289 XXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSVKMVA 3468
GDAWRIV+D+CLPV HLIDT+RSIPYAIKQVQEL+GISCAFDQ V+RLS+SV MVA
Sbjct: 1084 VKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVA 1143
Query: 3469 KGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFERAAEK 3648
KGVLK+HL+LLA+SMTC GN+IGF GGYKAL R+L + VPF EATLFTPRKCFE+A+EK
Sbjct: 1144 KGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEK 1203
Query: 3649 CHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSSNGR 3828
CH DSLSSIVASCSWGKHV VGTG+RF++LW+ KEI QDG D+++FLHLVR S G+
Sbjct: 1204 CHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGK 1263
Query: 3829 GLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNENSDR 4008
DT CLG E++DL L++E+ E+ +SPEH+ ++ KP F+D QN + +P
Sbjct: 1264 EPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVP----GSG 1319
Query: 4009 SNWEINSFESGARERNGEQRWNSNSAGVVTPK----------TGSWAGW-SKPNQSTEPS 4155
+W +N + W+S VT K + AGW K T+ +
Sbjct: 1320 GDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGTDKA 1379
Query: 4156 ---------GDAPSSDGWGSM---GSQKELSNPWNNKVKEPKETKRTEDDGKAQWDHWNK 4299
D+P S G G + S+ W K+ E +T ++DGK Q D +
Sbjct: 1380 QNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKIDEADKTGWNKNDGKPQMDKLRE 1439
Query: 4300 PRDSDVKLLNEHEYQSASGQMGAWLG-WETNTVPSSSQVSNISKSLESPRWDDVDSHKNP 4476
D D K+ E QS G + + G W+ N + + + ESP V+ H
Sbjct: 1440 SYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQ-----MEVVQHDESP----VNEHSWD 1490
Query: 4477 TNAWEKQ-GEEVKETGWNNKHEKTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKE-S 4650
N E + GW++ K W K + S SE Q + +K S
Sbjct: 1491 ANLPEDPLAQATTSVGWDSSTGK----DWTKRKLQSPSE----------QQRDPAIKSWS 1536
Query: 4651 LVTNMMEERVSQ--KEKNWDSSVGKGWSENEVQGQW-----GAHKEPAAESHAW------ 4791
N+M+E+ +Q WDS KGW++ E Q QW + + SH W
Sbjct: 1537 SSHNVMKEQSNQPASTHGWDSPGAKGWNDVEEQSQWNQRGSAVKNDQSESSHGWGPSNEQ 1596
Query: 4792 ------------------------------DKEGSPVKSRAWKTDVKLVKGK-----KPT 4866
K+ P SR W ++ K K KP
Sbjct: 1597 NQLPSSQGWGSPNAGAGHESETQSQWGQPSGKKSRPEGSRGWGSNNTEWKNKKNRPNKPQ 1656
Query: 4867 GSTH-GWNASGVFTATRQRLDQFTSEEQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDD 5043
G + ++A G+FTATRQR+D FTSEEQDIL DVEPIM SIRRI+HQ DGDPL DD
Sbjct: 1657 GPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADD 1716
Query: 5044 QSYILDNIFSYHPDKAGKTGSGVDYITVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLEN 5223
QSYILD +F+ HPDKA K G+G+DY+ V++HS + +SRCFY+VSTDG EDFSYRKCLEN
Sbjct: 1717 QSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLEN 1776
Query: 5224 FIRNKYPESAMSFIGKYFRKPQTGAN 5301
FI+ KYP++A +FIGKYFR+P+ G N
Sbjct: 1777 FIKEKYPDNAETFIGKYFRRPRAGGN 1802
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 1867 bits (4836), Expect = 0.0
Identities = 978/1715 (57%), Positives = 1206/1715 (70%), Gaps = 75/1715 (4%)
Frame = +1
Query: 382 SPCSNCLDIPQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLL 561
+PC C D PQ+S++E +G+ +LELK PS+SR +DGFW+FL +YGYRYG R LL
Sbjct: 179 APC--CQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILL 236
Query: 562 PCEVLEILKRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSV 741
P EV+EIL+R PE+TRK+L KGYFPQDGYILQ LPVPPNCLSVPD+SDG SIMSSDLSV
Sbjct: 237 PSEVMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSV 296
Query: 742 SMLKKVLKQVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGAN 921
SMLKKVLKQ+++IK SRSG P+FE+H IEAN+LQ ++ +YL +RG AK +++TRFG++
Sbjct: 297 SMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSS 356
Query: 922 KEADDSATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVT 1101
KE ++S+T+ WLEKMRTLFIRKGSGFSSRSV++GDAY+RV+EIGLP EIAQRITFEE+V
Sbjct: 357 KEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVN 416
Query: 1102 ERNKAHLQDLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTP 1281
N HLQ+LVD+KLCLTY+DG STYSLREGSKGHTFLR GQ+VHRRIMDGDIVFINR P
Sbjct: 417 VHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPP 476
Query: 1282 STHKHSLQAFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVE 1461
+THKHSLQA S+YVH DHTVKINPLICGP ADFDGDCV L+YPQSL AKAE LELFSVE
Sbjct: 477 TTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVE 536
Query: 1462 QQLLSSHSANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTG 1641
+QLLSSHS NLNLQL D+LLSLK++F+ +F NKA AQQLVM VS L PA+LK +G
Sbjct: 537 KQLLSSHSGNLNLQLATDSLLSLKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSG 596
Query: 1642 SRWTALQILQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKE 1821
WTALQILQ ALPS DC G+R I +S IL++D+NRD+LQSL NEI++S+F +KG E
Sbjct: 597 PCWTALQILQTALPSYFDCIGERHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNE 656
Query: 1822 ALNVFNSLQPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELL 2001
L F+SLQPLLMEN+F EG S++L+DF IP V ++IQ NV+ +S LL +RS Y+ELL
Sbjct: 657 VLKFFDSLQPLLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELL 716
Query: 2002 EMQLDNQLKSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSR 2181
++Q +N L+ K+PV NFIL SAL +LID+KS+S+I KVVQQ+GF+G QLS++GKFYSR
Sbjct: 717 QLQAENHLRLTKVPVANFILNSSALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSR 776
Query: 2182 TLVDDMTSLFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGL 2361
TLV+ M LF KY +G D PS FGLI SC F+GLDPYE MVHSIS+RE++VRSSRGL
Sbjct: 777 TLVEGMAYLFKSKYPFHGADYPSGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGL 836
Query: 2362 AEPGTLFKNLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLA 2541
+EPGTLFKNLMAILRDV+ICYDGTVRNVCSN +IQFEYG KA T +PAGE VGVLA
Sbjct: 837 SEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLA 896
Query: 2542 ATAISNPAYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCK 2721
ATA+SNPAYKAVLDS+PSSN SWELMKE+LLC+VNFKND+ DRRVILYLNDC CG++YC+
Sbjct: 897 ATAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCR 956
Query: 2722 ENAAYIVWNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLS 2901
ENAAY+V N+LK+ SLKD AV F+IEY KQ SS LVGHIH +K L+DLN+S
Sbjct: 957 ENAAYLVKNQLKKASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVS 1016
Query: 2902 MHEVLLKCQETISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLD 3081
M EV KC+ETI++ RKKK +G F KKI LS ECC FQ SC S+ +PCL F W
Sbjct: 1017 MQEVCQKCEETINSFRKKKN--VGPFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQG 1074
Query: 3082 TSGDALEKISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESX 3261
D LE+I I+A+ ICPVLL+T++KGD RV T NIIW+SPD +TW+RNP ++RKGE
Sbjct: 1075 NRDDNLEQILHILAHKICPVLLQTIIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELA 1134
Query: 3262 XXXXXXXXXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVER 3441
GDAWRIV+D+CLPV HLIDT+RSIPYAIKQVQEL+GISCAFDQ V+R
Sbjct: 1135 LDIVLEKAAVKQRGDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQR 1194
Query: 3442 LSRSVKMVAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPR 3621
LS+SV MVAKGVLK+HL+LLA+SMTC GN+IGF GGYKAL R+L + VPF EATLFTPR
Sbjct: 1195 LSKSVTMVAKGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPR 1254
Query: 3622 KCFERAAEKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLH 3801
KCFE+A+EKCH DSLSSIVASCSWGKHV VGTG+RF++LW+ KEI QDG D+++FLH
Sbjct: 1255 KCFEKASEKCHTDSLSSIVASCSWGKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLH 1314
Query: 3802 LVRMSSNGRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSR 3981
LVR S G+ DT CLG E++DL L++E+ E+ +SPEH+ ++ KP F+D QN +
Sbjct: 1315 LVRSGSYGKEPDTACLGAEVEDLILEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENH 1374
Query: 3982 IPYNENSDRSNWEINSFESGARERNGEQRWNSNSAGVVTPK----------TGSWAGW-S 4128
+P +W +N + W+S VT K + AGW
Sbjct: 1375 VP----GSGGDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDD 1430
Query: 4129 KPNQSTEPS---------GDAPSSDGWGSM---GSQKELSNPWNNKVKEPKETKRTEDDG 4272
K T+ + D+P S G G + S+ W K+ E +T ++DG
Sbjct: 1431 KGTWGTDKAQNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKIDEADKTGWNKNDG 1490
Query: 4273 KAQWDHWNKPRDSDVKLLNEHEYQSASGQMGAWLG-WETNTVPSSSQVSNISKSLESPRW 4449
K Q D + D D K+ E QS G + + G W+ N + + + ESP
Sbjct: 1491 KPQMDKLRESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQ-----MEVVQHDESP-- 1543
Query: 4450 DDVDSHKNPTNAWEKQ-GEEVKETGWNNKHEKTVSGQWKKSSIWSSSEGATNKLHPQVMQ 4626
V+ H N E + GW++ K W K + S SE Q
Sbjct: 1544 --VNEHSWDANLPEDPLAQATTSVGWDSSTGK----DWTKRKLQSPSE----------QQ 1587
Query: 4627 EESPLKE-SLVTNMMEERVSQ--KEKNWDSSVGKGWSENEVQGQW-----GAHKEPAAES 4782
+ +K S N+M+E+ +Q WDS KGW++ E Q QW + + S
Sbjct: 1588 RDPAIKSWSSSHNVMKEQSNQPASTHGWDSPGAKGWNDVEEQSQWNQRGSAVKNDQSESS 1647
Query: 4783 HAW------------------------------------DKEGSPVKSRAWKTDVKLVKG 4854
H W K+ P SR W ++ K
Sbjct: 1648 HGWGPSNEQNQLPSSQGWGSPNAGAGHESETQSQWGQPSGKKSRPEGSRGWGSNNTEWKN 1707
Query: 4855 K-----KPTGSTH-GWNASGVFTATRQRLDQFTSEEQDILSDVEPIMHSIRRILHQTRDK 5016
K KP G + ++A G+FTATRQR+D FTSEEQDIL DVEPIM SIRRI+HQ
Sbjct: 1708 KKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYN 1767
Query: 5017 DGDPLPPDDQSYILDNIFSYHPDKAGKTGSGVDYITVNKHSCYQDSRCFYIVSTDGRSED 5196
DGDPL DDQSYILD +F+ HPDKA K G+G+DY+ V++HS + +SRCFY+VSTDG ED
Sbjct: 1768 DGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKED 1827
Query: 5197 FSYRKCLENFIRNKYPESAMSFIGKYFRKPQTGAN 5301
FSYRKCLENFI+ KYP++A +FIGKYFR+P+ G N
Sbjct: 1828 FSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGN 1862
Score = 134 bits (337), Expect = 5e-28
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = +1
Query: 49 TTTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPG 228
+T +DG I+ I+F LAT +EIC +S+SD PI+H++QLTNPFLGLPLE GKCE+CGTAEPG
Sbjct: 6 STILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCGTAEPG 65
Query: 229 QCDGHFGYIGLPIPIYHPSH 288
QC+GHFGYI LPIPIYHP H
Sbjct: 66 QCEGHFGYIELPIPIYHPGH 85
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 1859 bits (4816), Expect = 0.0
Identities = 1000/1905 (52%), Positives = 1257/1905 (65%), Gaps = 164/1905 (8%)
Frame = +1
Query: 61 DGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPGQCDG 240
DG IT I+F LAT +EICT+SISD PI+HS+QLTNPFLGLPLE GKCE+CGT+EPG+C+G
Sbjct: 11 DGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCESCGTSEPGKCEG 70
Query: 241 HFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSERTSNSPCSNCLDIP--- 411
HFG+I LPIPIYHPSH + +C ++
Sbjct: 71 HFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAERLLSCCEVSIKE 130
Query: 412 --QISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVLEIL 585
QISI+E DG+ +LELK PS+SR RDG WNFL++YG+RYGD+ R LLPCEV++IL
Sbjct: 131 CAQISIREVKNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTRPLLPCEVMQIL 190
Query: 586 KRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKKVLK 765
KR P ETRK+LS KGYFPQDGYILQ+LPVPPNCLSVP VSDG ++MSSDLS+SMLKKVLK
Sbjct: 191 KRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSSDLSISMLKKVLK 250
Query: 766 QVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADDSAT 945
Q ++I++SRSG P+F+AH EA LQ V +YL +RG K +++TR+G KE+ +S T
Sbjct: 251 QAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRYGVKKESSESTT 310
Query: 946 RVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKAHLQ 1125
+ WLEKMRTLFIRKGSGFSSRSV++GDAY V+++G+P EIAQRITFEE+V+ N +LQ
Sbjct: 311 KAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEERVSVHNMRYLQ 370
Query: 1126 DLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKHSLQ 1305
+LVD KLCLTYKDG+STYSLREGSKGHTFLR GQ+VHRRIMDGDIVFINR P+THKHSLQ
Sbjct: 371 ELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQ 430
Query: 1306 AFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLSSHS 1485
A S+YVH DH VKINPLICGP ADFDGDCV L+YPQSLAAKAE LELFSVE+QLLSSHS
Sbjct: 431 ALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHS 490
Query: 1486 ANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTALQI 1665
NLNLQL D+LLSLK+MFK F K+ AQQL M +S L PA+LKV+ WTA QI
Sbjct: 491 GNLNLQLTTDSLLSLKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCFFPHWTAHQI 550
Query: 1666 LQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVFNSL 1845
LQ ALP+ +CSG+RF+I S L++DFNRD++ S+ NEI+ S+F++KGS L FNSL
Sbjct: 551 LQMALPACFNCSGERFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGAVLKFFNSL 610
Query: 1846 QPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLDNQL 2025
QP+LMEN+F EG S++L+DF I ++V + I + + +SPLL +RS ++EL+E+Q++N +
Sbjct: 611 QPMLMENLFSEGFSVSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVELQVENHI 670
Query: 2026 KSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDDMTS 2205
+ VK PV FIL SAL LID+KS++++ KVVQQ+GF+G+Q+SDRGK YS+TLV+D+ S
Sbjct: 671 RDVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVEDLAS 730
Query: 2206 LFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGTLFK 2385
F KY N D PS +GLI + F+GLD YE M HSIS+REV+VRSSRGL+EPGTLFK
Sbjct: 731 HFLSKYPANLFDYPSAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFK 790
Query: 2386 NLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAISNPA 2565
NLMAILRDV+ICYDGTVRNV SN +IQFEYG K T + L+PAGE VGVLAATA+SNPA
Sbjct: 791 NLMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAATAMSNPA 850
Query: 2566 YKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAYIVW 2745
YKAVLDSTPSSN SW++MKE+LLC+V FKND+ DRRVILYLNDCGCG+ YC+E AAY+V
Sbjct: 851 YKAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERAAYLVK 910
Query: 2746 NRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVLLKC 2925
N L++ SLKDIA F+IEY+ Q+ PES LVGH+H DK++L+DLN++ +L KC
Sbjct: 911 NHLEKVSLKDIAKCFMIEYKSQQI-PESFGSDAGLVGHVHLDKRKLQDLNITAQVILEKC 969
Query: 2926 QETISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDALEK 3105
QET++ RKKKK +G+ KK L VSE C FQQ D PCL F W LE+
Sbjct: 970 QETVNTFRKKKK--VGNLFKKTILLVSESCSFQQCIDES----PCLMFFWQGADDVHLER 1023
Query: 3106 ISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXXXXX 3285
S I+A++ICPVLLET++KGD R+ ANIIW +P+ +TW+RNP RT+KGE
Sbjct: 1024 TSNILADMICPVLLETIIKGDHRISCANIIWATPETNTWIRNPSRTQKGELALDIVLEKS 1083
Query: 3286 XXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSVKMV 3465
SGDAWRIV+DSCLPV HLI+T RSIPYAIKQVQEL+G+SCAFD V+RLS+SV MV
Sbjct: 1084 VVKKSGDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSVTMV 1143
Query: 3466 AKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFERAAE 3645
AKGVLK+HL+LL +SMTC G++IGFY GGYK L RSL I VPF EATLFTPRKCFE+AAE
Sbjct: 1144 AKGVLKEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKAAE 1203
Query: 3646 KCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSSNG 3825
KCH DSLSSIVASC+WGKHV VGTG+ F++LW+ KE N +G DV++FL++VR ++ G
Sbjct: 1204 KCHTDSLSSIVASCAWGKHVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFLNMVRSTAGG 1263
Query: 3826 RGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDD-EIQ-----QNMETSRIP 3987
T CLG E+DDL L++ED NLSPEHN KPTF+D E Q Q E++
Sbjct: 1264 EESVTACLGAEVDDLMLEDEDW--NLSPEHNSSSDKPTFEDSAEFQDFLGNQPAESNWEK 1321
Query: 3988 YNENSDRS----NWEINSFESGARE-------------------------RNGEQRWNSN 4080
+ DRS NW+++ + +E R WNS
Sbjct: 1322 ISSLKDRSRSSGNWDVDKNDGAVKEKPWSLGMNTAEANDVASSGWDTAAARTTNNSWNSE 1381
Query: 4081 SAGVVTPKTGSWAGWS------------KPNQSTEPSGDAPSSDGWGSMG-----SQKEL 4209
+ ++ S++GW+ K + S D + WG ++
Sbjct: 1382 NN---VAQSNSFSGWATKKPEPHNGFATKVQEEPTTSNDWDAGAAWGRKDRDNKFAETNA 1438
Query: 4210 SNPWNNKVKEPKET-------KRTEDD--GKAQWDHWNKPRDSDVKLLNEHEYQSASGQM 4362
S W KV + E+ KR ED G WD +D + Q A+ +
Sbjct: 1439 SKSWWGKVTDGDESGQNKSKNKRPEDQDVGTHGWDD-KMSQDQSISGWASKTTQEATTES 1497
Query: 4363 GAW------------LGWETNTV-----------------------------PSSSQVS- 4416
W GW+ + P S ++S
Sbjct: 1498 LGWDSKGNSNPGDAACGWKAASTWGAENTDGDKLWGKEVSSNQADTASGWGKPKSPEISL 1557
Query: 4417 ---NISKSLESPR-WDDVDSHKNPTNAWEKQ---GEEVKETGWNNK----HEKTVSGQWK 4563
+ +S++S R W S E Q G+ + GW NK T SG K
Sbjct: 1558 GWGSTKESVKSDRGWGVSSSGGGRDKKTENQSLAGQGKESGGWGNKVTSNQADTASGWGK 1617
Query: 4564 KSSI-----WSSSEGATNKLHPQVMQEESPLKESLVTNMMEER--VSQ-KEKNWDSSVGK 4719
S W S+ + ++H + + S N E + V Q KE WD+
Sbjct: 1618 PKSSENSQGWGLSKESGKEVHEWGVPNSAGGNGSETNNNNENQSLVEQGKESGWDNKASS 1677
Query: 4720 -------GWSENE---VQGQWGAHKEPAAESHAWDKEGSP------------VKSRAWKT 4833
GW + + + WG+ +EP H W S +SR +K
Sbjct: 1678 NQEGTASGWGKPKSPALSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQSREFKK 1737
Query: 4834 DVKLVKGKKPTGSTHG-W--------------NASGVFTATRQRLDQFTSEEQDILSDVE 4968
D +G + GS +G W NASG+FT TRQRLD FTS+EQDILSD+E
Sbjct: 1738 D--RFEGSRGWGSNNGDWKNKRNRPSKPHEDLNASGIFTTTRQRLDVFTSQEQDILSDIE 1795
Query: 4969 PIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGKTGSGVDYITVNKHSCYQ 5148
P+M SIRRI+HQT DGDPL DDQSY+LDN+F YHPDKA K G+G+D++TV++HS +Q
Sbjct: 1796 PLMLSIRRIMHQTGYNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQ 1855
Query: 5149 DSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYFRK 5283
+SRCFYIVSTDG +DFSYRKCLENFI+ KYP+ A FI KYF +
Sbjct: 1856 ESRCFYIVSTDGCKQDFSYRKCLENFIKGKYPDLADEFIAKYFAR 1900
>ref|XP_007010999.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|590569189|ref|XP_007011000.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727912|gb|EOY19809.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 1854 bits (4802), Expect = 0.0
Identities = 980/1792 (54%), Positives = 1231/1792 (68%), Gaps = 44/1792 (2%)
Frame = +1
Query: 52 TTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPGQ 231
+TVDG I I F LAT REI T+SIS FPI H +QL+N +LGLPLE GKC ACGT+EPG+
Sbjct: 8 STVDGEIVGIGFCLATPREIFTASISGFPINHVSQLSNSYLGLPLEFGKCNACGTSEPGK 67
Query: 232 CDGHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXX----DVSERTSNSPCSNC 399
C+GHFGYI LPIPIYHPSH +S+R S C N
Sbjct: 68 CEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLRMKNKFQIKSGSISDRLLASCCENA 127
Query: 400 LDIPQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDE-KCRQLLPCEVL 576
PQ+SIKE T DG+ LELK PS+ W FL+KYG+RYGD R LLPCEV+
Sbjct: 128 ---PQVSIKEVKTTDGACSLELKQPSRQARTS--WEFLEKYGFRYGDHHNTRTLLPCEVM 182
Query: 577 EILKRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKK 756
EILKR P ETR++LS KG+FPQ+GYIL+ LPVPPNCLSVPD+SDG SIMSSDLS +MLKK
Sbjct: 183 EILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNCLSVPDISDGVSIMSSDLSTAMLKK 242
Query: 757 VLKQVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADD 936
VLKQV+IIK+SRSG P+FE+H +EANDLQ AV +YL +RG KA N++ R+G +K+A D
Sbjct: 243 VLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIDARYGISKDASD 302
Query: 937 SATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKA 1116
S+T+ WLEKMRTLFIRKGSGFSSR V++GD Y++V+EIG+P EIAQRITFEE+V N
Sbjct: 303 SSTKAWLEKMRTLFIRKGSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEERVNMHNMR 362
Query: 1117 HLQDLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKH 1296
+LQ+LVD KLCLTY+DG+STYSLREGSKGHTFLR GQ+VHRRIMDGDIVFINR P+THKH
Sbjct: 363 YLQNLVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKH 422
Query: 1297 SLQAFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLS 1476
SLQA S+YVH DHTVKINPLICGP ADFDGDC+ L+YPQSLAAKAE ELFSVE+QLLS
Sbjct: 423 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEKQLLS 482
Query: 1477 SHSANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTA 1656
SH+ NLNLQL D+LLSL++M K F KA AQQL M +SS L PA LK +S G WTA
Sbjct: 483 SHNGNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTA 542
Query: 1657 LQILQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVF 1836
LQILQ A P+ LDCSGDR++I +S+IL +DF+RDL+QS+ NE+++S+F++KG KE LN F
Sbjct: 543 LQILQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFF 602
Query: 1837 NSLQPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLD 2016
+SLQPLLMEN+F EG S++L+DF + + V+++IQ ++Q +SPLL +RS Y+EL+ +Q++
Sbjct: 603 DSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQME 662
Query: 2017 NQLKSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDD 2196
N ++ K PV NFIL SAL DLID+KS+S++ KVVQQ+GF+G+QLS++GKFYS+TLV+D
Sbjct: 663 NHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVED 722
Query: 2197 MTSLFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGT 2376
+ F Y +GVD PS FGLI SC F+GLDPYE MVHSIS+REV+VRSSRGL+EPGT
Sbjct: 723 VAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGT 782
Query: 2377 LFKNLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAIS 2556
LFKNLMAILRDV+ICYDGTVRN+ SN +IQF+YG A T +PAGE VGVLAATA+S
Sbjct: 783 LFKNLMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVLAATAMS 840
Query: 2557 NPAYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAY 2736
NPAYKAVLDSTPSSN SWELMKE+LLC+V+ KND+ DRRVILYL DC CG++YC+ENAAY
Sbjct: 841 NPAYKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAY 900
Query: 2737 IVWNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVL 2916
+V N L++ LKD AV + EY++Q+T ES G LVGHI +K L++LN+SM EV
Sbjct: 901 LVKNHLRKVKLKDTAVELIFEYKQQQTVSESEAG---LVGHILLNKAVLKELNISMQEVH 957
Query: 2917 LKCQETISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDA 3096
+KCQETI + RKKKK K+ L SECC QQSC + + CL F +T D
Sbjct: 958 MKCQETIISFRKKKK--TADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDH 1015
Query: 3097 LEKISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXX 3276
L+ + +II PVLLETV+KGDPR+ +ANIIWVSPD +TW+R+P +T+KGE
Sbjct: 1016 LDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVL 1075
Query: 3277 XXXXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSV 3456
+GDAWR V+D CLPV +LIDT+RSIPYAIKQVQEL+GISCAF+Q V+RLS SV
Sbjct: 1076 EKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSV 1135
Query: 3457 KMVAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFER 3636
MVA+GVLK+HL+LLA+SMTC GN+IGF GGYKAL RSL I VPF+EATLFTPRKCFER
Sbjct: 1136 SMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFER 1195
Query: 3637 AAEKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMS 3816
AAEKCH DSLSSIVASCSWGKHVAVGTG+RF++LW++KE+ +Q DV+NFLH++ S
Sbjct: 1196 AAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHML-SS 1254
Query: 3817 SNGRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNE 3996
++G TTCLG E+DDL + E +LSPEH++ KP F+D +N +
Sbjct: 1255 ASGPSSTTTCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFEN------DLDF 1308
Query: 3997 NSDRSNWEINSFESGARERNGEQRWNSN--------SAGVVTPKTGSWAGWSKPNQSTEP 4152
S+WE N WN +A T K W W T+
Sbjct: 1309 QPAESSWEKGVSLDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTSKSKTQD 1368
Query: 4153 SGDAPSSDGWGSMGSQKELSNPWNNKVKEPKETKRTEDDGKAQWDHWNKPRDSDVKLLNE 4332
+ A +S ++K W + +E T G A+ + W R S K+
Sbjct: 1369 AAAAATST------TKKTEWCDWGTSKSKTQEVAATV-TGTAEQNEWCDWRTSKSKIQVV 1421
Query: 4333 HEYQSASGQMGAWLGWETNTVPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQ----- 4497
+++ + W W T+ + + ++ ++E+ W D K+ T +
Sbjct: 1422 AAAVTSTTKQSEWGDWGTSKSKTQDVAAAVTGTMET-EWGDWGKGKSKTQDVSPKVDGTC 1480
Query: 4498 -GEEVKETGWNNKHEKTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKESLV--TNMM 4668
E+ K + W K T ++ + S+ + E P + +
Sbjct: 1481 VNEQTKLSDWGLKKNDTQDVSMEEKTFKSNGADTGTSWGTMGKESEKPDANDALPWSGWG 1540
Query: 4669 EERVSQKEKNWDSSVGKGWSEN---EVQGQWGAHKE--PAAESHAWD------------- 4794
+ V + DSS GW + E WG+ E A S+ WD
Sbjct: 1541 TQDVIPTKTLDDSSKSSGWEQQKSPECSQGWGSLDESNQPASSNGWDTPNGLGSTQSEKQ 1600
Query: 4795 -KEGSPVKSRAWKTDVKLVKGKKPTGSTHGWN----ASGVFTATRQRLDQFTSEEQDILS 4959
+ G SR W +D K P S N + ++TATRQRLD FTSEEQDILS
Sbjct: 1601 HQWGQSRGSRRWASDAS--KKNHPVKSARVMNDDSSMAAMYTATRQRLDMFTSEEQDILS 1658
Query: 4960 DVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGKTGSGVDYITVNKHS 5139
DVEP+M SIR+I+HQ+ DGDPL DQS+IL+N+F++HPDKA K G+GVDY+ V+KHS
Sbjct: 1659 DVEPLMQSIRKIMHQSGYNDGDPLSALDQSFILENVFTHHPDKAIKMGAGVDYVMVSKHS 1718
Query: 5140 CYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYFRKPQTG 5295
+ DSRCFY+VSTDGR +DFSYRKCL+NFI+ KYP+ A FI KYFRKP+ G
Sbjct: 1719 NFPDSRCFYVVSTDGRKQDFSYRKCLDNFIKGKYPDMADVFIAKYFRKPRFG 1770
>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
gi|462415343|gb|EMJ20080.1| hypothetical protein
PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 1842 bits (4772), Expect = 0.0
Identities = 961/1844 (52%), Positives = 1251/1844 (67%), Gaps = 99/1844 (5%)
Frame = +1
Query: 49 TTTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPG 228
+T ++G IT I+F LAT +EICT+SIS+ I+H++QL+NPFLGLPLE GKCE+CGT+E G
Sbjct: 7 STILEGEITGIKFGLATHQEICTASISNCAISHASQLSNPFLGLPLEFGKCESCGTSEAG 66
Query: 229 QCDGHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXD-----VSERTSNSPCS 393
+C+GHFGYI LPIPI+HP+H ++ER +S C
Sbjct: 67 KCEGHFGYIELPIPIFHPNHVSELKRMLSLLCLKCLKMKKNKFPTKNAGLAERMLSSCCE 126
Query: 394 NCLDIPQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEV 573
D Q+SI E DGS L+LK PSKSR GFWNFL++YG+RYGD R LLPCEV
Sbjct: 127 ---DASQVSIGEIKPTDGSCSLQLKRPSKSRTPPGFWNFLERYGFRYGDGHIRTLLPCEV 183
Query: 574 LEILKRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLK 753
+E+LKR P+ETRK+L+AKGYFPQDGYIL ++PVPPNCLSVP++SDG S+MS+D S+SMLK
Sbjct: 184 MEMLKRIPQETRKKLAAKGYFPQDGYILSQIPVPPNCLSVPEISDGVSVMSADPSISMLK 243
Query: 754 KVLKQVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEAD 933
KVLKQV+II++SRSG P+FE+ I+EAN+LQ + +YL +RG K +++ RFG NKE +
Sbjct: 244 KVLKQVEIIRSSRSGIPNFESQIVEANELQAIIDQYLQVRGTGKPSRDIDARFGVNKELN 303
Query: 934 DSATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNK 1113
S+T+ WLEKMRTLFIRKGSGFSSRSV++GDA++RV+E+G+P EIAQRITFEEKV + N
Sbjct: 304 ASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAFRRVNEVGIPYEIAQRITFEEKVNDHNI 363
Query: 1114 AHLQDLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHK 1293
+LQ+LVD KLCLTYKDG+STYSLREGSKGHTFLR GQ+VHRRIMDGD+VF+NR P+THK
Sbjct: 364 RYLQELVDSKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRPPTTHK 423
Query: 1294 HSLQAFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLL 1473
HSLQA +YVH DH VKINPLICGP ADFDGDC+ L+YPQSLAAKAE LELFSVE+QLL
Sbjct: 424 HSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 483
Query: 1474 SSHSANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWT 1653
SSHS NLQL DALLSLK+MFK +F +KA AQQL M SS L PA+LK +S S WT
Sbjct: 484 SSHSGKPNLQLAADALLSLKMMFKKYFLDKAAAQQLAMFASSSLPRPALLKANSAHSYWT 543
Query: 1654 ALQILQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNV 1833
A QILQ ALP+ DCSGD +++ +SEIL +DF+ + ++ N+I +SVF++KG ++ L
Sbjct: 544 AFQILQTALPAHFDCSGDNYLVNKSEILNIDFSTSSVAAVMNDIATSVFFEKGGEDVLKF 603
Query: 1834 FNSLQPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQL 2013
F+SLQPLLMEN+F EG S+ L+DF + ++ ++DIQ N+Q S LL +RS Y+E +E QL
Sbjct: 604 FDSLQPLLMENLFSEGFSVGLEDFYMSRTSIQDIQKNIQDSSDLLYHLRSTYNEFVEFQL 663
Query: 2014 DNQLKSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVD 2193
N+++SVK+PV +FIL+ SAL DLID+KS+S+I K+VQQ+GF+G+QLSD+G+FYS+TLV+
Sbjct: 664 QNRIRSVKVPVSHFILESSALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLVE 723
Query: 2194 DMTSLFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPG 2373
D+ SL H KY + +D PS +GL+ SC F+GLDPYEA+VHSI++REV+VRSSRGL+EPG
Sbjct: 724 DVASLCHSKYP-SDIDYPSAEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEPG 782
Query: 2374 TLFKNLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAI 2553
TLFKNLMAILRDV+ICYDGTVRNVCSN +IQFEYG + L+PAGE VGVLAATA+
Sbjct: 783 TLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVGVLAATAM 842
Query: 2554 SNPAYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAA 2733
SNPAYKAVLDSTPSSN SWELMKE+LLC+VNFKN++ DRRVILYLN+CGCG++YC+E AA
Sbjct: 843 SNPAYKAVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERAA 902
Query: 2734 YIVWNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEV 2913
+V N+LK+ SLKD AV F+IEY Q + S + LVGHIH ++ L +LN+ +H++
Sbjct: 903 CLVKNQLKKVSLKDTAVEFMIEYNNQLSGLGSLINDAGLVGHIHLNEDMLRELNIGVHDI 962
Query: 2914 LLKCQETISASRKKK----KDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLD 3081
L KCQETI++ R+KK K +G+ K L SE C F SC + PCL F
Sbjct: 963 LQKCQETINSFRRKKVGKKKFNIGYHFKNTVLFASEHCSFHHSCAEKRSDSPCLMFFLQA 1022
Query: 3082 TSGDALEKISLIM--ANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGE 3255
T D LE + + A++ICPVLLET++KGDPR+ +ANIIW+ PD +TW+R+P +++KGE
Sbjct: 1023 T--DDLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGE 1080
Query: 3256 SXXXXXXXXXXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVV 3435
SGDAWR V+DSCLPV HLIDT+RSIPYAIKQ+QEL+G+SCAFDQ V
Sbjct: 1081 WALDIVLEKSVIKQSGDAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAV 1140
Query: 3436 ERLSRSVKMVAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFT 3615
+RLS +V MVAKGVLK+HL+LLA+SMTC GN +GF GYKAL R+L I VPF EATLFT
Sbjct: 1141 QRLSTAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFT 1200
Query: 3616 PRKCFERAAEKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNF 3795
PRKCFERAAEKCH DSL+SIVASCSWGKHVAVGTG RF++LW+ +E+E Q+G DVFNF
Sbjct: 1201 PRKCFERAAEKCHMDSLASIVASCSWGKHVAVGTGVRFDVLWDTREVELTQEGGLDVFNF 1260
Query: 3796 LHLVRMSSNGRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMET 3975
LH+V ++N T LG E+DDL L +E + + SPE N + +P F+D ++ + +
Sbjct: 1261 LHMVS-TANVEEATTGALGAEVDDLMLVDEMADSSFSPELNSSFDRPVFED-LVEFDDKL 1318
Query: 3976 SRIPYNENSDRSNWEINSFESGARERNGEQRWN--SNSAGVVTPKTGSWAGWSKPNQSTE 4149
+P ++SNWE +S S + NG + W+ N V P W+ W T+
Sbjct: 1319 GDLP-----EKSNWEKDS--SFHTDSNGGKDWSVDKNVGTVAVPDV--WSSWGTEKGKTQ 1369
Query: 4150 PSGDAPS------------SDGWGSMGSQKELSNPWNNKVKEPKE--------------- 4248
S A + S WG +++ ++ W +
Sbjct: 1370 DSNSAEAQLDSKKSSVLDTSSAWGKNPAKENTTSTWGTTTASENDWCGRGVGEDDSATLS 1429
Query: 4249 --------------TKRTEDDGKAQW----------DHWNKPRDSDVKLLNEHEYQSASG 4356
T +D + W W R ++ Q S
Sbjct: 1430 GKKSGVLNTSSAWATNTAREDAASAWGTNPAKENSTSTWGTTRANENDWCGREVGQDDSA 1489
Query: 4357 QMGAWLGWETNTVPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQGEEVKETGWNNK- 4533
+ +T SS+ +N ++ + W + +N T+ W E W +
Sbjct: 1490 SLSVKKSSVLDT--SSAWATNTAREDAASAWGKHPAKENTTSTWGTT--TASENDWCGRG 1545
Query: 4534 --HEKTVSGQWKKSSIWS-SSEGATNKLHPQVMQE--ESPLKESLVTNMMEERVSQKE-- 4692
H+ + S KKSS+ + SS ATN ++P KE+ + S+ +
Sbjct: 1546 VGHDDSASLSGKKSSVLNTSSVWATNTAREDATSAWGKNPAKENTTSTWGTTTASENDWC 1605
Query: 4693 ------------------------KNWDSSVGKGWSENEVQGQWGAHKEPAAESHAWDKE 4800
WDS G G + E QWG H+ + + ++
Sbjct: 1606 GREAGKVEPVDLQPTKPQDDSASLSGWDSPTGDG-NSGERNHQWGQHRGDQTKKNRFEGA 1664
Query: 4801 GSPVKSRA-WKTDVKLVK--GKKPTGSTHGWNASGVFTATRQRLDQFTSEEQDILSDVEP 4971
+ V S WK + K G ST G ++T TRQRLD FTSEEQD+LS++EP
Sbjct: 1665 RNWVSSPGEWKNKNRPPKSPGMVNDNSTMG----ALYTVTRQRLDMFTSEEQDVLSNIEP 1720
Query: 4972 IMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGKTGSGVDYITVNKHSCYQD 5151
+M S+RRI+HQ+ DGDPL DDQS++LDN+F+YHPDKA K G G+D++TVN+H +QD
Sbjct: 1721 VMRSLRRIMHQSGYNDGDPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQD 1780
Query: 5152 SRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYFRK 5283
SRCF++VSTDGR+EDFSYRKCL+N+IR K+P+ A +FIGKYF +
Sbjct: 1781 SRCFFVVSTDGRTEDFSYRKCLDNYIREKFPDLAETFIGKYFSR 1824
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 1828 bits (4735), Expect = 0.0
Identities = 982/1863 (52%), Positives = 1244/1863 (66%), Gaps = 112/1863 (6%)
Frame = +1
Query: 49 TTTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPG 228
+T ++G+I I+F LAT +EICT+SISD I+H++QL NPFLGLPLE GKCE+CGT+EPG
Sbjct: 7 STILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPG 66
Query: 229 QCDGHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXD-----VSERTSNSPCS 393
+C+GHFGYI LPIPIYHPSH V++R +S C
Sbjct: 67 KCEGHFGYIELPIPIYHPSHISELKRMLSLLCLKCLKMKSTKLQIKNDGVAQRLLSSCCE 126
Query: 394 NCLDIPQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEV 573
+ Q+SI + T DG+ YLELK PSK R GFWNFL++YG+RYGD R LL EV
Sbjct: 127 ---EASQVSIVDVKTTDGAFYLELKLPSKFRLCAGFWNFLERYGFRYGDSLTRTLLASEV 183
Query: 574 LEILKRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLK 753
E+LKR PEETRK+L+ KGYFPQDGYIL+ LPVPPNCLSVPD+SDG S MSSDLS++MLK
Sbjct: 184 KEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 243
Query: 754 KVLKQVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEAD 933
KVLKQV+II++SRSG P+FE+ +E+NDLQLAV +YL +RG AK+ +++ RFG +++
Sbjct: 244 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQD-P 302
Query: 934 DSATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNK 1113
+S T+ WLEKMRTLFIRKGSGFSSRSV++GDAY+RV+EIG+P EIAQRITFEE+V N
Sbjct: 303 NSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 362
Query: 1114 AHLQDLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHK 1293
+LQ+LVD KLCLTY DG+S+YSLREGSKGHTFLR GQ+VHRRIMDGD VFINR P+THK
Sbjct: 363 NYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHK 422
Query: 1294 HSLQAFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLL 1473
HSLQA S+YVH DHTVKINPLICGP ADFDGDC+ L+YPQSLAAKAE LELFSVE+QLL
Sbjct: 423 HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 482
Query: 1474 SSHSANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWT 1653
SSH+ NLNLQL DALLSLK+MFK +F +KA AQQL M S L PA+ K +G RWT
Sbjct: 483 SSHNGNLNLQLATDALLSLKVMFKKYFLDKAFAQQLAMFALSPLPRPALSKAHCSGPRWT 542
Query: 1654 ALQILQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNV 1833
ALQILQ LP D GDR++I +SE+L DF+RD + S+ NEI++S+F++KG +E L
Sbjct: 543 ALQILQSVLPPGFDSCGDRYLIKKSEVLNGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 602
Query: 1834 FNSLQPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQL 2013
F+SLQPLLMEN+F +G S++L+DF + K+ + +IQ +Q + LL S +EL+++Q+
Sbjct: 603 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQI 662
Query: 2014 DNQLKSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVD 2193
+N ++ VK+ V FILK S L LID+KS+S++ KVVQQ GF+G+QLSDRGKFYS+TLV+
Sbjct: 663 ENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 722
Query: 2194 DMTSLFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPG 2373
D+ S F R Y ++ ++ P+ +GLI C F+GLDPYE M HSIS+REV+VRSSRGL+EPG
Sbjct: 723 DIASHFERIYPMD-LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 781
Query: 2374 TLFKNLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAI 2553
TLFKNLMA+LRDV+ICYDGTVRNVCSN +IQF+Y A S + L+PAGE VGVLAATA+
Sbjct: 782 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS-HSLFPAGEPVGVLAATAM 840
Query: 2554 SNPAYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAA 2733
SNPAYKAVLDS+PSSN SWELMKE+LLCRV+F ND DRRVILYLNDCGCG++YC+E AA
Sbjct: 841 SNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAA 900
Query: 2734 YIVWNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEV 2913
Y+V N+LKR SLKD AV FLIEY+K PE LVGHIH +K LEDL +SMH++
Sbjct: 901 YMVKNQLKRVSLKDAAVEFLIEYKK----PEIISDDEGLVGHIHLNKILLEDLRISMHDI 956
Query: 2914 LLKCQETI-SASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSG 3090
L KCQET+ S +KKK + F K LS+SECC FQQSC + +PCL F S
Sbjct: 957 LPKCQETLKSFCKKKKMKKVVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASD 1016
Query: 3091 DALEKISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXX 3270
L+K+S ++AN+I PVLLET++KGDPR+ +ANIIW+SPD + W+RNP + RKGE
Sbjct: 1017 SYLDKLSGVLANMIYPVLLETIIKGDPRICSANIIWISPDTTAWIRNPSKNRKGELALDV 1076
Query: 3271 XXXXXXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSR 3450
SGDAWR V+DSCLPVFHLIDT+RS+PYAIKQVQEL+G+SCAF+Q V+RLS
Sbjct: 1077 VLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSA 1136
Query: 3451 SVKMVAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCF 3630
SV MVAKGVLK+HL+LLA+SMTC G+++GF GGYKAL RSL + VPF EATLF PRKCF
Sbjct: 1137 SVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCF 1196
Query: 3631 ERAAEKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVR 3810
E+AAEK H D+LSS+VA+CSWGKHVAVGTG+RF++LW + E NQD DV++FLH+VR
Sbjct: 1197 EKAAEKRHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVR 1256
Query: 3811 MSSNGRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDD--------DEIQQN 3966
S+ LDT CLG E+D LE ++ + +LSPEHN KP F+D + Q+N
Sbjct: 1257 SSTGIEELDTGCLGEEVDGLE---DEFDWSLSPEHNLCSDKPIFEDLVEDQSWLENKQEN 1313
Query: 3967 METSRIPYNENSDRSNWE--------------------------INSFESGARERNG--- 4059
S WE + S +R+ +G
Sbjct: 1314 ENWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGT 1373
Query: 4060 EQRWNSNSA----GVVTPKTGSWAGWSKPNQSTEPSGDAP---------SSDGWGSMGSQ 4200
E W +S+ V +P S++ W + GD P +S GWGS S
Sbjct: 1374 EASWGESSSDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVRSPAAKTSSGWGSEASW 1433
Query: 4201 KELSNPWNNKVKEPKETKRTEDDGKAQWDHWNKPRDSDVKLLNEHEYQSASGQMGAWLGW 4380
+ V + KA W ++ + +V E S G W
Sbjct: 1434 GKSPGDRQENVGRSASKPLSGWGAKASWGKSSEDKLEEV----ETTVAKPSSAWGTEASW 1489
Query: 4381 ETNTV------------PSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQGEEVKETGW 4524
+ ++ P S + S +S W + H N T +W + G E + +GW
Sbjct: 1490 DKSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSE-ENSGW 1548
Query: 4525 N----------NKHEKTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKESLVTNMMEE 4674
+ +K + S SS+W + E + K + + S ++S+V +
Sbjct: 1549 DTKASWNTKALDKLDDVGSAVENSSSVWGAREDFSTK-GWEDSSKPSANEKSIVHQIGGW 1607
Query: 4675 RVSQKEKNWDSSVGKGWSENEVQG----QWGAHK------EPAAESHAWD----KEGSPV 4812
V + DSS GK +G WG K A S+AWD GS
Sbjct: 1608 NVPDAKGTDDSSWGKQKLTENAKGTDDSSWGKQKHTENESSQPASSNAWDLPDATGGSET 1667
Query: 4813 --------------KSRAWKTDVKLVKGKK------PTGSTHGWNASGVFTATRQRLDQF 4932
K+R W + KGKK P + ++T TRQRLD F
Sbjct: 1668 EMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMF 1727
Query: 4933 TSEEQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGKTGSGV 5112
TSEEQDILSDVEPIM SIRRI+HQ+ DGD L DD+S+I DN+F+YHPDKA K G+G+
Sbjct: 1728 TSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGI 1787
Query: 5113 DYITVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYFRKPQT 5292
D+ V+KH +QDSRC ++VSTDG +DFSYRKCLE+FIR KYPE FIGKYFR+P++
Sbjct: 1788 DHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPEFVDEFIGKYFRRPRS 1847
Query: 5293 GAN 5301
G N
Sbjct: 1848 GGN 1850
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 1822 bits (4720), Expect = 0.0
Identities = 980/1862 (52%), Positives = 1243/1862 (66%), Gaps = 111/1862 (5%)
Frame = +1
Query: 49 TTTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPG 228
+T ++G+I I+F LAT +EICT+SISD I+H++QL NPFLGLPLE GKCE+CGT+EPG
Sbjct: 7 STILEGQIVGIRFGLATQKEICTASISDCSISHASQLANPFLGLPLEFGKCESCGTSEPG 66
Query: 229 QCDGHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXD-----VSERTSNSPCS 393
+C+GHFGYI LPIPIYHPSH V++R +S C
Sbjct: 67 KCEGHFGYIELPIPIYHPSHISELKHMLSLLCLKCLKMKSTKFQIKNDGVAQRLLSSCCE 126
Query: 394 NCLDIPQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEV 573
+ Q+SI + T DG+ YLELK PSK R GFWNFL++YG+RYGD R LL EV
Sbjct: 127 ---EASQVSIVDVKTTDGAFYLELKLPSKFRLCAGFWNFLERYGFRYGDSLTRTLLASEV 183
Query: 574 LEILKRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLK 753
E+LKR PEETRK+L+ KGYFPQDGYIL+ LPVPPNCLSVPD+SDG S MSSDLS++MLK
Sbjct: 184 KEMLKRIPEETRKKLAGKGYFPQDGYILEYLPVPPNCLSVPDISDGVSTMSSDLSIAMLK 243
Query: 754 KVLKQVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEAD 933
KVLKQV+II++SRSG P+FE+ +E+NDLQLAV +YL +RG AK+ +++ RFG +++
Sbjct: 244 KVLKQVEIIRSSRSGTPNFESQEVESNDLQLAVGQYLEVRGTAKSSRDVDARFGVSQD-P 302
Query: 934 DSATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNK 1113
+S T+ WLEKMRTLFIRKGSGFSSRSV++GDAY+RV+EIG+P EIAQRITFEE+V N
Sbjct: 303 NSTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNI 362
Query: 1114 AHLQDLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHK 1293
+LQ+LVD KLCLTY DG+S+YSLREGSKGHTFLR GQ+VHRRIMDGD VFINR P+THK
Sbjct: 363 NYLQELVDNKLCLTYSDGSSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHK 422
Query: 1294 HSLQAFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLL 1473
HSLQA S+YVH DHTVKINPLICGP ADFDGDC+ L+YPQSLAAKAE LELFSVE+QLL
Sbjct: 423 HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLL 482
Query: 1474 SSHSANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWT 1653
SSH+ NLNLQL DALLSLK+MFK +F +KA QQL M S L PA+ K + +RWT
Sbjct: 483 SSHNGNLNLQLATDALLSLKVMFKKYFLDKAFTQQLAMFALSPLPRPALSK-ARCSARWT 541
Query: 1654 ALQILQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNV 1833
ALQILQ LP D GDR++I +SE+L+ DF+RD + S+ NEI++S+F++KG +E L
Sbjct: 542 ALQILQSVLPPGFDSCGDRYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEF 601
Query: 1834 FNSLQPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQL 2013
F+SLQPLLMEN+F +G S++L+DF + K+ + +IQ +Q + LL S +EL+++Q+
Sbjct: 602 FDSLQPLLMENLFADGFSVSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQI 661
Query: 2014 DNQLKSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVD 2193
+N ++ VK+ V FILK S L LID+KS+S++ KVVQQ GF+G+QLSDRGKFYS+TLV+
Sbjct: 662 ENHIRHVKMLVAKFILKSSTLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVE 721
Query: 2194 DMTSLFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPG 2373
D+ S F R Y ++ ++ P+ +GLI C F+GLDPYE M HSIS+REV+VRSSRGL+EPG
Sbjct: 722 DIASHFERIYPMD-LNYPTAKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPG 780
Query: 2374 TLFKNLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAI 2553
TLFKNLMA+LRDV+ICYDGTVRNVCSN +IQF+Y A S + L+PAGE VGVLAATA+
Sbjct: 781 TLFKNLMAVLRDVVICYDGTVRNVCSNSIIQFDYAVNARKS-HSLFPAGEPVGVLAATAM 839
Query: 2554 SNPAYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAA 2733
SNPAYKAVLDS+PSSN SWELMKE+LLCRV+F ND DRRVILYLNDCGCG++YC+E AA
Sbjct: 840 SNPAYKAVLDSSPSSNNSWELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAA 899
Query: 2734 YIVWNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEV 2913
Y+V N+LKR SLKD AV FLIEY+K PE LVGHIH +K LEDL +SMH++
Sbjct: 900 YMVKNQLKRVSLKDAAVEFLIEYKK----PEIISDDEGLVGHIHLNKILLEDLRISMHDI 955
Query: 2914 LLKCQETI-SASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSG 3090
L KCQET+ S +KKK + F K LSVSECC FQQSC + +PCL F S
Sbjct: 956 LPKCQETLKSFCKKKKMKKVVQFFKNTSLSVSECCSFQQSCADKRSNMPCLMFVLRGASD 1015
Query: 3091 DALEKISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXX 3270
L+K+S ++AN+I PVLLET++KGDPR+ +ANIIW+SPD + W+RNP + RKGE
Sbjct: 1016 SYLDKLSGVLANMIYPVLLETIIKGDPRIYSANIIWISPDTTAWIRNPSKNRKGELALDV 1075
Query: 3271 XXXXXXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSR 3450
SGDAWR V+DSCLPVFHLIDT+RS+PYAIKQVQEL+G+SCAF+Q V+RLS
Sbjct: 1076 VLEKSVVKQSGDAWRTVLDSCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSA 1135
Query: 3451 SVKMVAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCF 3630
SV MVAKGVLK+HL+LLA+SMTC G+++GF GGYKAL RSL + VPF EATLFTPRKCF
Sbjct: 1136 SVTMVAKGVLKEHLILLANSMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFTPRKCF 1195
Query: 3631 ERAAEKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVR 3810
E+AAEKCH D+LSS+VA+CSWGKHVAVGTG+RF++LW + E NQD DV++FLH+VR
Sbjct: 1196 EKAAEKCHTDNLSSVVAACSWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVR 1255
Query: 3811 MSSNGRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDD--------DEIQQN 3966
S+ DT CLG E+D LE ++ + +LSPEHN KP F+D + Q+N
Sbjct: 1256 SSTGIEESDTGCLGEEVDGLE---DEFDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQEN 1312
Query: 3967 METSRIPYNENSDRSNWE--------------------------INSFESGARERNG--- 4059
S WE + S +R+ +G
Sbjct: 1313 ANWDSEADCRKSSEDKWEKLGTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGT 1372
Query: 4060 EQRWNSNSA----GVVTPKTGSWAGWSKPNQSTEPSGDAP--------SSDGWGSMGSQK 4203
E W +S V +P S++ W + GD P +S GWGS S
Sbjct: 1373 EASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSEASWG 1432
Query: 4204 ELSNPWNNKVKEPKETKRTEDDGKAQWDHWNKPRDSDVKLLNEHEYQSASGQMGAWLGWE 4383
+ S V + KA W ++ + +V E S G W+
Sbjct: 1433 KSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEV----ETTVAKPSSAWGTEASWD 1488
Query: 4384 TNTV------------PSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQGEEVKETGWN 4527
++ P S + S +S W + H N T +W + G E + +GW+
Sbjct: 1489 KSSEVTLEKVAAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSE-ENSGWD 1547
Query: 4528 ----------NKHEKTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKESLVTNMMEER 4677
+K + S SS+W + E + K + + S ++S+V +
Sbjct: 1548 TKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTK-GWEDSSKPSANEKSIVHQIGGWN 1606
Query: 4678 VSQKEKNWDSSVGKGWSENEVQG----QWGAHKE------PAAESHAWD----KEGSPV- 4812
V + DS GK +G WG K A S+AWD GS
Sbjct: 1607 VPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQKHTENESPQPASSNAWDLPDATGGSETE 1666
Query: 4813 -------------KSRAWKTDVKLVKGKK------PTGSTHGWNASGVFTATRQRLDQFT 4935
K+R W + KGKK P + ++T TRQRLD FT
Sbjct: 1667 MQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFT 1726
Query: 4936 SEEQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGKTGSGVD 5115
SEEQDILS VEPIM SIRRI+HQ+ DGD L DD+S+I DN+F+YHPDKA K G+G+D
Sbjct: 1727 SEEQDILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGID 1786
Query: 5116 YITVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYFRKPQTG 5295
+ V+KH +QDSRC ++VSTDG +DFSYRKCLE+FIR KYP+ FIGKYFR+P++G
Sbjct: 1787 HFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRRPRSG 1846
Query: 5296 AN 5301
N
Sbjct: 1847 GN 1848
>ref|XP_007011001.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
[Theobroma cacao] gi|508727914|gb|EOY19811.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
3 [Theobroma cacao]
Length = 1675
Score = 1717 bits (4448), Expect = 0.0
Identities = 917/1696 (54%), Positives = 1153/1696 (67%), Gaps = 44/1696 (2%)
Frame = +1
Query: 52 TTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPGQ 231
+TVDG I I F LAT REI T+SIS FPI H +QL+N +LGLPLE GKC ACGT+EPG+
Sbjct: 8 STVDGEIVGIGFCLATPREIFTASISGFPINHVSQLSNSYLGLPLEFGKCNACGTSEPGK 67
Query: 232 CDGHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXX----DVSERTSNSPCSNC 399
C+GHFGYI LPIPIYHPSH +S+R S C N
Sbjct: 68 CEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLRMKNKFQIKSGSISDRLLASCCENA 127
Query: 400 LDIPQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDE-KCRQLLPCEVL 576
PQ+SIKE T DG+ LELK PS+ W FL+KYG+RYGD R LLPCEV+
Sbjct: 128 ---PQVSIKEVKTTDGACSLELKQPSRQARTS--WEFLEKYGFRYGDHHNTRTLLPCEVM 182
Query: 577 EILKRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKK 756
EILKR P ETR++LS KG+FPQ+GYIL+ LPVPPNCLSVPD+SDG SIMSSDLS +MLKK
Sbjct: 183 EILKRIPAETRRKLSGKGFFPQEGYILRYLPVPPNCLSVPDISDGVSIMSSDLSTAMLKK 242
Query: 757 VLKQVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADD 936
VLKQV+IIK+SRSG P+FE+H +EANDLQ AV +YL +RG KA N++ R+G +K+A D
Sbjct: 243 VLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRNIDARYGISKDASD 302
Query: 937 SATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKA 1116
S+T+ WLEKMRTLFIRKGSGFSSR V++GD Y++V+EIG+P EIAQRITFEE+V N
Sbjct: 303 SSTKAWLEKMRTLFIRKGSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEERVNMHNMR 362
Query: 1117 HLQDLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKH 1296
+LQ+LVD KLCLTY+DG+STYSLREGSKGHTFLR GQ+VHRRIMDGDIVFINR P+THKH
Sbjct: 363 YLQNLVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKH 422
Query: 1297 SLQAFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLS 1476
SLQA S+YVH DHTVKINPLICGP ADFDGDC+ L+YPQSLAAKAE ELFSVE+QLLS
Sbjct: 423 SLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEKQLLS 482
Query: 1477 SHSANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTA 1656
SH+ NLNLQL D+LLSL++M K F KA AQQL M +SS L PA LK +S G WTA
Sbjct: 483 SHNGNLNLQLATDSLLSLRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTA 542
Query: 1657 LQILQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVF 1836
LQILQ A P+ LDCSGDR++I +S+IL +DF+RDL+QS+ NE+++S+F++KG KE LN F
Sbjct: 543 LQILQTAFPACLDCSGDRYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFF 602
Query: 1837 NSLQPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLD 2016
+SLQPLLMEN+F EG S++L+DF + + V+++IQ ++Q +SPLL +RS Y+EL+ +Q++
Sbjct: 603 DSLQPLLMENVFAEGFSVSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQME 662
Query: 2017 NQLKSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDD 2196
N ++ K PV NFIL SAL DLID+KS+S++ KVVQQ+GF+G+QLS++GKFYS+TLV+D
Sbjct: 663 NHIRVAKAPVANFILNSSALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVED 722
Query: 2197 MTSLFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGT 2376
+ F Y +GVD PS FGLI SC F+GLDPYE MVHSIS+REV+VRSSRGL+EPGT
Sbjct: 723 VAYQFQSIYPSDGVDYPSAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGT 782
Query: 2377 LFKNLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAIS 2556
LFKNLMAILRDV+ICYDGTVRN+ SN +IQF+YG A T +PAGE VGVLAATA+S
Sbjct: 783 LFKNLMAILRDVVICYDGTVRNISSNSIIQFQYGLNARTKPQ--FPAGEPVGVLAATAMS 840
Query: 2557 NPAYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAY 2736
NPAYKAVLDSTPSSN SWELMKE+LLC+V+ KND+ DRRVILYL DC CG++YC+ENAAY
Sbjct: 841 NPAYKAVLDSTPSSNSSWELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAY 900
Query: 2737 IVWNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVL 2916
+V N L++ LKD AV + EY++Q+T ES G LVGHI +K L++LN+SM EV
Sbjct: 901 LVKNHLRKVKLKDTAVELIFEYKQQQTVSESEAG---LVGHILLNKAVLKELNISMQEVH 957
Query: 2917 LKCQETISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDA 3096
+KCQETI + RKKKK K+ L SECC QQSC + + CL F +T D
Sbjct: 958 MKCQETIISFRKKKK--TADTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDH 1015
Query: 3097 LEKISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXX 3276
L+ + +II PVLLETV+KGDPR+ +ANIIWVSPD +TW+R+P +T+KGE
Sbjct: 1016 LDCTLQDLVDIIYPVLLETVIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVL 1075
Query: 3277 XXXXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSV 3456
+GDAWR V+D CLPV +LIDT+RSIPYAIKQVQEL+GISCAF+Q V+RLS SV
Sbjct: 1076 EKSAVKQNGDAWRTVIDCCLPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSV 1135
Query: 3457 KMVAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFER 3636
MVA+GVLK+HL+LLA+SMTC GN+IGF GGYKAL RSL I VPF+EATLFTPRKCFER
Sbjct: 1136 SMVARGVLKEHLILLANSMTCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFER 1195
Query: 3637 AAEKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMS 3816
AAEKCH DSLSSIVASCSWGKHVAVGTG+RF++LW++KE+ +Q DV+NFLH++ S
Sbjct: 1196 AAEKCHVDSLSSIVASCSWGKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHML-SS 1254
Query: 3817 SNGRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNE 3996
++G TTCLG E+DDL + E +LSPEH++ KP F+D +N +
Sbjct: 1255 ASGPSSTTTCLGEEVDDLMDVDNMAEWSLSPEHSNGLDKPVFEDAADFEN------DLDF 1308
Query: 3997 NSDRSNWEINSFESGARERNGEQRWNSN--------SAGVVTPKTGSWAGWSKPNQSTEP 4152
S+WE N WN +A T K W W T+
Sbjct: 1309 QPAESSWEKGVSLDKVSSWNVSSAWNKKAEDGDKFAAALTSTTKQSDWCDWGTSKSKTQD 1368
Query: 4153 SGDAPSSDGWGSMGSQKELSNPWNNKVKEPKETKRTEDDGKAQWDHWNKPRDSDVKLLNE 4332
+ A +S ++K W + +E T G A+ + W R S K+
Sbjct: 1369 AAAAATST------TKKTEWCDWGTSKSKTQEVAATV-TGTAEQNEWCDWRTSKSKIQVV 1421
Query: 4333 HEYQSASGQMGAWLGWETNTVPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQ----- 4497
+++ + W W T+ + + ++ ++E+ W D K+ T +
Sbjct: 1422 AAAVTSTTKQSEWGDWGTSKSKTQDVAAAVTGTMET-EWGDWGKGKSKTQDVSPKVDGTC 1480
Query: 4498 -GEEVKETGWNNKHEKTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKESLV--TNMM 4668
E+ K + W K T ++ + S+ + E P + +
Sbjct: 1481 VNEQTKLSDWGLKKNDTQDVSMEEKTFKSNGADTGTSWGTMGKESEKPDANDALPWSGWG 1540
Query: 4669 EERVSQKEKNWDSSVGKGWSEN---EVQGQWGAHKE--PAAESHAWD------------- 4794
+ V + DSS GW + E WG+ E A S+ WD
Sbjct: 1541 TQDVIPTKTLDDSSKSSGWEQQKSPECSQGWGSLDESNQPASSNGWDTPNGLGSTQSEKQ 1600
Query: 4795 -KEGSPVKSRAWKTDVKLVKGKKPTGSTHGWN----ASGVFTATRQRLDQFTSEEQDILS 4959
+ G SR W +D K P S N + ++TATRQRLD FTSEEQDILS
Sbjct: 1601 HQWGQSRGSRRWASDAS--KKNHPVKSARVMNDDSSMAAMYTATRQRLDMFTSEEQDILS 1658
Query: 4960 DVEPIMHSIRRILHQT 5007
DVEP+M SIR+I+HQ+
Sbjct: 1659 DVEPLMQSIRKIMHQS 1674
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 1650 bits (4272), Expect = 0.0
Identities = 851/1620 (52%), Positives = 1128/1620 (69%), Gaps = 24/1620 (1%)
Frame = +1
Query: 49 TTTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPG 228
++ +D I I+FSLA +EIC ++ISD PITH++QL+NPFLGLP+E GKCE+CGT+EPG
Sbjct: 8 SSILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCESCGTSEPG 67
Query: 229 QCDGHFGYIGLPIPIYHPSH-XXXXXXXXXXXXXXXXXXXXXXXDVSERTSNSPCSNCLD 405
+C+GHFGYI LPIPIYHP+H +ER +S C D
Sbjct: 68 KCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKTKNIGFAERLLSSCCE---D 124
Query: 406 IPQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVLEIL 585
Q++I+E DG+ YL+LK PS++ ++ FW+FL++YG+RYGD R LLPCEV E+L
Sbjct: 125 ASQVTIREAKKADGASYLQLKVPSRTSLQERFWDFLERYGFRYGDNFTRTLLPCEVKEML 184
Query: 586 KRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKKVLK 765
K+ P ETRK+L+ +GY+PQDGYILQ LPVPPNCLSVP++SDG ++MSSD +VSMLKK+LK
Sbjct: 185 KKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSSDPAVSMLKKILK 244
Query: 766 QVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADDSAT 945
QV+IIK SRSG P+FE+H +EANDLQLAV +YL +RG KA ++ RFG NKE +D +T
Sbjct: 245 QVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKELNDPST 304
Query: 946 RVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKAHLQ 1125
+ WLEKMRTLFIRKGSGFSSRSV++GDAY+ V+EIG+P E+AQRITFEE+V+ N +LQ
Sbjct: 305 KAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHNIRYLQ 364
Query: 1126 DLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKHSLQ 1305
+LVDKKLCLTY+DG+S YSLREGS GHT+L+ GQ+VHRRIMDGDIVFINR P+THKHSLQ
Sbjct: 365 ELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQ 424
Query: 1306 AFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLSSHS 1485
A +Y+H DH VKINPLICGP ADFDGDC+ L+YPQS+AAKAE L LFSVE+QLLSSHS
Sbjct: 425 ALRVYLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHS 484
Query: 1486 ANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTALQI 1665
NLNLQL ND+LLSLK+MF+ +F KA AQQL M VSS L PA+L V S WTALQI
Sbjct: 485 GNLNLQLANDSLLSLKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQI 544
Query: 1666 LQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVFNSL 1845
LQ LP+ DC GD ++I S L+ DF+RD + SL NEI++S+F++KG +E L F+SL
Sbjct: 545 LQTVLPASFDCHGDSYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSL 604
Query: 1846 QPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLDNQL 2025
QPLLME+IF EG S+ L D+ +P + ++ +Q N+Q +SPLL +RS ++EL+E+QL+N L
Sbjct: 605 QPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHL 664
Query: 2026 KSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDDMTS 2205
+SVK+P NFILKLS+L L D+KSES+I KVVQQ+GF+G+QLSD+G+FYS++L++D+ S
Sbjct: 665 RSVKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVAS 724
Query: 2206 LFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGTLFK 2385
LFH +Y+ + +D PS FGL+ C F+GLDPYE MVHSIS+REV+VRSSRGL EPGTLFK
Sbjct: 725 LFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFK 784
Query: 2386 NLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAA-TSANCLYPAGEAVGVLAATAISNP 2562
NLMAILRDV+ICYDGTVRNVCSN +IQ EYG KA L+P GE VGVLAATA+S P
Sbjct: 785 NLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTP 844
Query: 2563 AYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAYIV 2742
AYKAVLDSTPSSN SW++MKE+LLC+V+FKN+ DRRVILYLN+C CG++YC ENAAY+V
Sbjct: 845 AYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVV 904
Query: 2743 WNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVLLK 2922
+ LK+ +LKD A+ F+IEY +Q T S LG G LVGH+H ++ L++LN+ M EVL +
Sbjct: 905 KSHLKKVTLKDAAMDFMIEYNRQPT--PSGLGPG-LVGHVHLNRMLLKELNIDMTEVLRR 961
Query: 2923 CQETISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDALE 3102
CQET+S+ +KKKK + H L+ S+SE C F Q E +PCL F W T LE
Sbjct: 962 CQETMSSFKKKKK-KIAHALR---FSISEHCAFHQWNGEESIDMPCLIF-WHQTRDVHLE 1016
Query: 3103 KISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXXXX 3282
+ + I+A+I+ P+L ET++KGDPR+ +A++IW+SPD ++W +NP R + GE
Sbjct: 1017 RTAHILADIVFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCLEK 1076
Query: 3283 XXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSVKM 3462
+GDAWR V+D CLPV HLIDT+RS+PYAIKQVQEL+GISCAFDQ+++RLS+SV M
Sbjct: 1077 SAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSM 1136
Query: 3463 VAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFERAA 3642
V+KGVL DHL+LLA+SMTCTGN+IGF GGYKAL R+L I VPF EATLFTPRKCFE+AA
Sbjct: 1137 VSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRKCFEKAA 1196
Query: 3643 EKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSSN 3822
EKCH DSLSSIVASCSWGKHVAVGTG+RF+ILW++KE+ QD V DV+NFLH+VR S
Sbjct: 1197 EKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVR-SGK 1255
Query: 3823 GRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNENS 4002
+ CLG EI+D+ +++E E+ LSPE KP F+D ++ +
Sbjct: 1256 SEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEFEHC------LDNYP 1309
Query: 4003 DRSNWEINSFESGARERNGEQRWNSNSAGVVTPKT--GSWAGWSK--------PNQSTEP 4152
S WE + GA G Q W SN G T + W+GW + N
Sbjct: 1310 GESKWE-KAPSLGAVSTGGGQ-WESNENGKATNSSDGNDWSGWGRKAEPDVTVTNAQENT 1367
Query: 4153 SGDA-PSSDGWGSMGSQKELSNPWNN-KVKEPKETKRTEDDGKAQWDHWNKPRDSDVKLL 4326
S A ++ WG+ + N W+N KE + T + + W+ K
Sbjct: 1368 SNSAWDTTSSWGNKATNSSNDNDWSNCSTKEVERDSFTSMEKTPKSGGWDSASTWGTKTK 1427
Query: 4327 NE-HEYQSASGQMGAWLGWETNTVPSSSQV-SNISKSLESPRWDDVDSHKNPTNAWEKQG 4500
++ + ++A + W G + + + + +S W+D + + +
Sbjct: 1428 DDSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMASKSGGWEDKAWSRGTSKTEDNWS 1487
Query: 4501 EEVKETGWNNKHE----KTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKESLVTNMM 4668
+VK+ + + + + + W + W+ + G ++ ++ + V++
Sbjct: 1488 SQVKDKAESFQVQVQEVSSKTNGWGSTGGWTKNSGGDHQSEAGWNDGQASMDREKVSDRW 1547
Query: 4669 EERVSQK-EKNWDSSVGK---GWSENEVQGQWGAHKEPAAESHAWDKEGSPVKSRAWKTD 4836
+ + +QK E + SS G G S++ + H + + +H+WD++ SP S+ + D
Sbjct: 1548 DRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDHSD-SVVNHSWDRQKSPEASQGFGND 1606
Score = 238 bits (608), Expect = 2e-59
Identities = 153/491 (31%), Positives = 229/491 (46%), Gaps = 57/491 (11%)
Frame = +1
Query: 4000 SDRSNWEINSFESGARERNGEQRWNSN----------SAGVVTPKTGSWA---GWSKPNQ 4140
S WE ++ G + E W+S V+ KT W GW+K N
Sbjct: 1465 SKSGGWEDKAWSRGTSKT--EDNWSSQVKDKAESFQVQVQEVSSKTNGWGSTGGWTK-NS 1521
Query: 4141 STEPSGDAPSSDGWGSMGSQKELSNPWNNKVKEPKETKRTEDDGKA-------------- 4278
+ +A +DG SM +K +S+ W+ K + E+ +T G
Sbjct: 1522 GGDHQSEAGWNDGQASMDREK-VSDRWDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAV 1580
Query: 4279 ---------QWDH--------------WNKPRDSDVKLLNEHEYQSASGQMGAWLGWETN 4389
WD W + + DV + +S G+ +
Sbjct: 1581 DHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEG 1640
Query: 4390 TVPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQGEEVKETGWNNKHEKTVSGQWKKS 4569
+ QV+N KS ++ WD + P W+KQ W ++++ S
Sbjct: 1641 SDHGFDQVTNEQKSSDTRGWDSQEKTDKP---WDKQKSLEASQSWGSQNDSLGS------ 1691
Query: 4570 SIWSSSEGATNKLHPQVMQEESPLKESLVTNMMEERVSQKEKNWDSSVGKGWSENEVQGQ 4749
W + A+ + + + S T + + + W+ EV
Sbjct: 1692 --WGQPQRASEECSRESQDDSS-------TQFSQLKPPETSLGWEQQ-----KSPEVSHG 1737
Query: 4750 WGAHKEPAAE--SHAWDKEGSPVK-----SRAWKTDVKLVKGKKPTGSTHGWNASGVFTA 4908
WG+HKE + + SH WDK+ K + WK K K P S N ++TA
Sbjct: 1738 WGSHKESSEQTSSHGWDKKNQGSKGWGGNAGEWKNR-KNRPPKSPGMSNDDANLRALYTA 1796
Query: 4909 TRQRLDQFTSEEQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDK 5088
+ QRLD FTSEEQDIL+D+EPIM SIR+++HQ+ DGDPL +DQS++L ++F++HPDK
Sbjct: 1797 SGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDK 1856
Query: 5089 AGKTGSGVDYITVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIG 5268
A K G+G+D+ V++HS +Q+SRCFY+V+TDG EDFSYRKCL+NFI+ KYP+ A F+
Sbjct: 1857 AAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVA 1916
Query: 5269 KYFRKPQTGAN 5301
KYFRKP+ N
Sbjct: 1917 KYFRKPRPNRN 1927
>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1 [Solanum lycopersicum]
Length = 1632
Score = 1625 bits (4207), Expect = 0.0
Identities = 829/1421 (58%), Positives = 1037/1421 (72%), Gaps = 15/1421 (1%)
Frame = +1
Query: 61 DGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPGQCDG 240
DG + I+F LAT +EIC SSISD PITH + L NPFLGLPLE+G+CE+CGTAEPGQC+G
Sbjct: 12 DGIVKRIKFGLATPQEICKSSISDCPITHPSLLLNPFLGLPLEAGRCESCGTAEPGQCEG 71
Query: 241 HFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSERTSNSPCSNCLDIPQIS 420
HFGYI LPIPIYHP H + S C D+ Q+S
Sbjct: 72 HFGYIELPIPIYHPDHVSELKKMLSLLCLKCLKMKNRKVKNAGVLERMLSSCCEDVSQVS 131
Query: 421 IKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVLEILKRFPE 600
+ E T DG+ YLELK P K+ + WNFL+KYGYRYGD R LLP EVL IL+R E
Sbjct: 132 VYEGKTSDGASYLELKVP-KNAAKLQEWNFLEKYGYRYGDGYSRPLLPSEVLAILRRIRE 190
Query: 601 ETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKKVLKQVDII 780
+TRK+LSAKGYFPQ+GYILQ LPVPPNCLSVPD+SDG +IMSSD S++ML+KVL+Q+DII
Sbjct: 191 DTRKKLSAKGYFPQEGYILQYLPVPPNCLSVPDISDGNNIMSSDHSITMLRKVLRQIDII 250
Query: 781 KNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADDSATRVWLE 960
K+SRSG P+FEAH +EANDLQ AV +YL RG KA +++ RFG +KEA D+ T+ WLE
Sbjct: 251 KSSRSGTPNFEAHEVEANDLQAAVVQYLQFRGTGKASRDVDKRFGIHKEAADTTTKAWLE 310
Query: 961 KMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKAHLQDLVDK 1140
KM+TLFIRKGSGFSSRSV++GD Y+ V EIGLP EIAQ+ITFEE+V++ N A+LQ LVD+
Sbjct: 311 KMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPCEIAQKITFEERVSQHNMAYLQKLVDE 370
Query: 1141 KLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKHSLQAFSIY 1320
KLCLTYKDG+STYSLREGSKGHTFLR GQ+VHRRIMDGD VFINR P+THKHSLQA S+Y
Sbjct: 371 KLCLTYKDGSSTYSLREGSKGHTFLRPGQIVHRRIMDGDTVFINRPPTTHKHSLQALSVY 430
Query: 1321 VHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLSSHSANLNL 1500
VH DHTVKINPL+CGP ADFDGDC+ L+YPQSL+AKAE LELF+V +QLLSSH+ N NL
Sbjct: 431 VHDDHTVKINPLMCGPLSADFDGDCIHLFYPQSLSAKAEVLELFAVGKQLLSSHTGNFNL 490
Query: 1501 QLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTALQILQCAL 1680
QL D+LLSLK+MF +FF+KA AQQL M + L AV+ V +G+ WT LQIL AL
Sbjct: 491 QLATDSLLSLKLMFSHYFFDKAAAQQLAMFLPMALPDSAVVDVRKSGAMWTTLQILGAAL 550
Query: 1681 PSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVFNSLQPLLM 1860
P D G+ I +S+ L +D++RDL+ S+ N++I+S+++ KG + L FNSLQPLLM
Sbjct: 551 PDGFDSCGETHTIGKSQFLGIDYHRDLISSILNDVITSIYFMKGPNDVLKFFNSLQPLLM 610
Query: 1861 ENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLDNQLKSVKL 2040
EN+ EG SI+L+DF + K+V + IQ +Q +S LL+ +RS Y+E +E+QL++ L++ KL
Sbjct: 611 ENLCTEGFSISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHLRNEKL 670
Query: 2041 PVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDDMTSLFHRK 2220
PV++F+LK S + LID+KSES+ KVVQQ+GF+G+Q+SDRGKFY++TLV DM LF +K
Sbjct: 671 PVIDFVLKSSGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYTKTLVHDMAQLFQKK 730
Query: 2221 YAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGTLFKNLMAI 2400
Y G + PSE FGL+ SCLF GLDPY+ M+HSISSREV+VRS+RGL EPGTLFKNLMAI
Sbjct: 731 YPSVGTN-PSEEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFKNLMAI 789
Query: 2401 LRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAISNPAYKAVL 2580
LRDV+ICYDGTVRNV SN +IQFEYG+ ++ + AG+ VGVLAATA+SNPAYKAVL
Sbjct: 790 LRDVVICYDGTVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAVL 849
Query: 2581 DSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAYIVWNRLKR 2760
DS+PSSN SWE+MKE+LLC V+FKND++DRRVILYLNDCGC + YC+E AAY+V N L +
Sbjct: 850 DSSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLSK 909
Query: 2761 FSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVLLKCQETIS 2940
LKD A FLIEY ++ E+S L+GHI ++ +LE+L +S+ EV +CQE IS
Sbjct: 910 VCLKDAADEFLIEYAGRQAGYENSETGTGLIGHIRLNQGQLENLGISVLEVHERCQENIS 969
Query: 2941 ASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDALEKISLIM 3120
+ +KKKK +G+ K+I LSVSE C F + S+ PCL+FSW D S D LE++S I+
Sbjct: 970 SFQKKKK--IGNLFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSHIL 1027
Query: 3121 ANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXXXXXXXXGS 3300
A++ICP+LL+TV+KGDPRV +ANI W+SPD +W+R+P ++++GE
Sbjct: 1028 ADMICPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVKQR 1087
Query: 3301 GDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSVKMVAKGVL 3480
GDAWRI+MDSCLPV HLIDT RSIPYAIKQVQEL+GISCAF+Q V+RLS SV MV KGVL
Sbjct: 1088 GDAWRILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVKRLSTSVTMVTKGVL 1147
Query: 3481 KDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFERAAEKCHAD 3660
KDHL+LLA+SMTC GN++GF GG KAL RSL + +PF EATLFTPRKCFERAAEKCH D
Sbjct: 1148 KDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCHVD 1207
Query: 3661 SLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSSNGRGLDT 3840
SLSSIVASCSWGKHVAVGTG+RFE+L N + +E N +DV++FLHLVR +S T
Sbjct: 1208 SLSSIVASCSWGKHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFLHLVRNTSAQEVEGT 1267
Query: 3841 TCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNENSDR---- 4008
+CLG EID+LE ++ED + LSP + PTF+D + YNEN D
Sbjct: 1268 SCLGAEIDELE-EDEDMGLYLSPNRDSGSEMPTFED--------RAEFDYNENLDEGKPS 1318
Query: 4009 -SNWEINSFESGARERNGEQRWN-----SNSAGVVTPKTGSWAGWSK----PNQSTEPSG 4158
S WE S SG+ + G W+ N A ++ SW+ W K P + + SG
Sbjct: 1319 GSAWEKAS--SGSVKSGGS--WDMAGKTQNGAEEGVNQSDSWSAWGKKVDEPENNRQQSG 1374
Query: 4159 DAPSSDGWGSMGSQKEL-SNPWNNKVKEPKETKRTEDDGKA 4278
S W S G + E W+ EPK+ GKA
Sbjct: 1375 SGEQSGSWSSWGKKVEKDGGSWD----EPKQLNSESSWGKA 1411
Score = 184 bits (468), Expect = 3e-43
Identities = 122/344 (35%), Positives = 169/344 (49%), Gaps = 3/344 (0%)
Frame = +1
Query: 4264 DDGKAQWDHWNKPRDSDVKLLNEHEYQSASGQMGAWLGWETNTVPSSSQVSNISKSLESP 4443
D+GK W K VK + + Q GA G V S S K ++ P
Sbjct: 1313 DEGKPSGSAWEKASSGSVKSGGSWD-MAGKTQNGAEEG-----VNQSDSWSAWGKKVDEP 1366
Query: 4444 RWDDVDSHKNP-TNAWEKQGEEVKETG--WNNKHEKTVSGQWKKSSIWSSSEGATNKLHP 4614
+ S + +W G++V++ G W+ + W K+ AT + +
Sbjct: 1367 ENNRQQSGSGEQSGSWSSWGKKVEKDGGSWDEPKQLNSESSWGKAPNGGGLGSATAEGNK 1426
Query: 4615 QVMQEESPLKESLVTNMMEERVSQKEKNWDSSVGKGWSENEVQGQWGAHKEPAAESHAWD 4794
++ Q + S+ R QK N K W E +W S W
Sbjct: 1427 RLDQSVNDWSSSV------SRDGQKXTNTXXLYKKWWLE--FFKRWWLEL-----SEGWQ 1473
Query: 4795 KEGSPVKSRAWKTDVKLVKGKKPTGSTHGWNASGVFTATRQRLDQFTSEEQDILSDVEPI 4974
WK + +P S N G FTATRQ++D FT+EEQ+I+SDV+PI
Sbjct: 1474 ----------WKNN-------RPARSADDSNRGGHFTATRQKIDLFTAEEQEIISDVDPI 1516
Query: 4975 MHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGKTGSGVDYITVNKHSCYQDS 5154
M +R DPL DDQSYI+D + +YHPDKA K G+G+DYITV+KH+ +QD+
Sbjct: 1517 MLKVR----------SDPLSADDQSYIIDTVLNYHPDKAVKMGAGLDYITVSKHTNFQDT 1566
Query: 5155 RCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYFRKP 5286
RCFY+VSTDG +DFS RKCLENF+R+KYP+ A +F KYF+KP
Sbjct: 1567 RCFYVVSTDGAKQDFSTRKCLENFVRSKYPDKAETFNEKYFKKP 1610
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 1619 bits (4192), Expect = 0.0
Identities = 864/1688 (51%), Positives = 1122/1688 (66%), Gaps = 100/1688 (5%)
Frame = +1
Query: 58 VDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPGQCD 237
+DG + I+F LAT +EICT+S+ I+H++QL+NPFLGLPLE GKCE+CGT+EPG+C+
Sbjct: 10 LDGELIGIRFGLATHQEICTASMMGCSISHASQLSNPFLGLPLEFGKCESCGTSEPGKCE 69
Query: 238 GHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSERTSNSPCSNCLDIPQI 417
GHFGYI LP+PIYHP+H S C C D Q+
Sbjct: 70 GHFGYIDLPVPIYHPNHVSELKKLLSLLCLKCLKMKKNKSAGLAERLLSVC--CEDAAQV 127
Query: 418 SIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVLEILKRFP 597
SI E +DG L+LK PS + GFWNFL++YG+RYGD R LLP EV++IL+R P
Sbjct: 128 SITEFKPRDGVCSLQLKLPSNKKPPPGFWNFLERYGFRYGDGVKRILLPREVMQILRRIP 187
Query: 598 EETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKKVLKQVDI 777
EET+K+L+ +GY PQDGYIL +PVPPNCLSVP++SDG +I+S+D S+SMLKKVL++V+
Sbjct: 188 EETKKKLATRGYNPQDGYILNHIPVPPNCLSVPEISDGVTIISADPSISMLKKVLRRVEE 247
Query: 778 IKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADDSATRVWL 957
I +SRSG +FE+ I E + LQ +V +YL +RG KA + RFG KE +S+T+ WL
Sbjct: 248 ISSSRSGAANFESEIDEVDLLQESVDQYLQVRGTGKASRESDARFGGTKELSESSTKAWL 307
Query: 958 EKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKAHLQDLVD 1137
EKMRTLFIRKGSGFSSR+V++GDAY+RV+E+G+P +IAQRITFEEKV N LQ+LVD
Sbjct: 308 EKMRTLFIRKGSGFSSRTVITGDAYRRVNEVGIPYDIAQRITFEEKVNAHNIRRLQELVD 367
Query: 1138 KKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKHSLQAFSI 1317
KLCLTY DG+STYSLREGSKGHTFL+ GQ+VHRRIMDGD+VF+NR P+THKHSLQA +
Sbjct: 368 SKLCLTYSDGSSTYSLREGSKGHTFLKPGQVVHRRIMDGDLVFVNRPPTTHKHSLQALQV 427
Query: 1318 YVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLSSHSANLN 1497
YVH D VKINPLICGP ADFDGDC+ L+YPQSLAAKAE +ELFSVE+QLLSSHS N
Sbjct: 428 YVHEDKVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVMELFSVEKQLLSSHSGKPN 487
Query: 1498 LQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTALQILQCA 1677
LQL D+LLSLK+MFK +FFNKA QQL M VSS L PA+LK +ST WTALQILQ A
Sbjct: 488 LQLATDSLLSLKLMFKKYFFNKAAMQQLAMFVSSSLPQPALLKANSTVPCWTALQILQTA 547
Query: 1678 LPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVFNSLQPLL 1857
LP+Q SGDR ++ SE+L LD + L+ SL N+I +S+F++K +++ L+ FNS+QPLL
Sbjct: 548 LPAQFQSSGDRHLVKDSEVLLLDCSTSLVPSLINDIGTSIFFEKSAEDVLSFFNSMQPLL 607
Query: 1858 MENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLDNQLKSVK 2037
MEN+F EG S+ L+DF +P++ ++DIQ ++ +SPLL MR+ Y+EL+EMQL+N ++ VK
Sbjct: 608 MENLFSEGFSVGLEDFALPRASIQDIQKGLKEISPLLFHMRTVYNELVEMQLENHIRKVK 667
Query: 2038 LPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDDMTSLFHR 2217
PV NFIL SAL DLID+KS+S++ KVVQQVGF+G QL D+GK YS+TLV+D++SL+
Sbjct: 668 EPVSNFILNSSALGDLIDSKSDSAMNKVVQQVGFLGRQLYDQGKLYSKTLVEDVSSLYQN 727
Query: 2218 KYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGTLFKNLMA 2397
KY + VD PS FGL+ +GLDP E M+HSI++REV+VRSSRGL+EPGTLFKNLMA
Sbjct: 728 KYPSDIVDYPSAEFGLVHRGFVHGLDPVEGMIHSIATREVIVRSSRGLSEPGTLFKNLMA 787
Query: 2398 ILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAISNPAYKAV 2577
LRDV+ICYDGTVRNVCSN +IQFEYG K+ + L+PAGE VGVLAATA+SNPAYKAV
Sbjct: 788 TLRDVVICYDGTVRNVCSNSIIQFEYGVKSGSGPENLFPAGEPVGVLAATAMSNPAYKAV 847
Query: 2578 LDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAYIVWNRLK 2757
LDSTPSSN SW+LMKE+LLC+VNFKN++ DRRV+LYLNDCGCG++YC+E+AAY+V NRLK
Sbjct: 848 LDSTPSSNSSWDLMKEILLCKVNFKNELIDRRVVLYLNDCGCGRKYCREHAAYLVKNRLK 907
Query: 2758 RFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVLLKCQETI 2937
+ SLKD AV F+IEYQK++ + + G LVGH+H ++ L +LNL M E+L KC+ETI
Sbjct: 908 KVSLKDTAVEFMIEYQKERAAGSMEIDSG-LVGHVHLNEMLLRELNLGMSEILQKCEETI 966
Query: 2938 SASRKK---KKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDALEKI 3108
++ R+K KK +G K+ LS SECC F QS PCL F + D + LE I
Sbjct: 967 NSFRRKKVGKKMNIGEIFKRTILSYSECCSFHQSSADNRSGSPCLMFFYQDFNNSELEAI 1026
Query: 3109 SLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXXXXXX 3288
S ++A+ ICPVLL+TV+KGDPR+ +ANIIW++ + +TW+R+P ++ KGE
Sbjct: 1027 SQMLADFICPVLLKTVIKGDPRISSANIIWINSESTTWIRSPNKSLKGELALDVVLEKSV 1086
Query: 3289 XXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSVKMVA 3468
SGDAWRI +D CLPV HLIDT+RSIPYAIKQVQEL+G+SCAFDQ V+RL+++V MVA
Sbjct: 1087 VKQSGDAWRIALDCCLPVLHLIDTRRSIPYAIKQVQELLGVSCAFDQAVQRLAKAVAMVA 1146
Query: 3469 KGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFERAAEK 3648
KGVLK+HL+LLA+SMTC GN +GF GGYKAL R+L I VPF EATLFTP+KCFERAAEK
Sbjct: 1147 KGVLKEHLILLANSMTCAGNFVGFNPGGYKALSRALNIQVPFTEATLFTPKKCFERAAEK 1206
Query: 3649 CHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSSNGR 3828
CH DSLSSIVASCSWGKHVAVGTG+RFEILW+ KE N+ G DVFNFLH+V ++NG
Sbjct: 1207 CHMDSLSSIVASCSWGKHVAVGTGSRFEILWDTKEGGLNEVGGVDVFNFLHMVN-AANGE 1265
Query: 3829 GLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDD-DEIQQNMETSRIP------ 3987
L T LG EIDDL D E+ +++LSPEHN KP F+D E N E +P
Sbjct: 1266 ELTTAALGTEIDDLVPDYENGDVSLSPEHNSSSDKPVFEDIVEFPDNFE--NVPGKSSWD 1323
Query: 3988 --YNENSDRSNWEINSFESGARER-NGEQRWNSNSA-GVVTPKTGSWAGWSKPNQSTE-- 4149
Y ++ +W + + G ++ + E + +S SA G+ TP+ + W +TE
Sbjct: 1324 SIYTASTGGKDW--GAVKIGTQDGISAETQADSTSAWGIKTPREDDTSPWGTAKTATEDA 1381
Query: 4150 PSG--------DAPSSDGWGSMGSQKELSNPWN--NKVKEPKETKRTEDDGKAQW----- 4284
PS DAPS+ WG ++++ +PW E + +D + W
Sbjct: 1382 PSAWGTKTVKEDAPSA--WGIKTAREDARSPWGTAKTATEDASSATAREDAPSPWGTAKT 1439
Query: 4285 ------DHW-------NKPRDSDVKLLNE----------HEYQSASGQMGAWLGWE---- 4383
W + P K + E + A GA E
Sbjct: 1440 ATGDALSAWGTKTLKEDAPSAWGTKTVREDAPSPWGTAKRATEDAPAAWGAKSATEDAPP 1499
Query: 4384 --------TNTVPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQGE-------EVKE- 4515
PS+ V + K SP W+ + ++ T AW + E EV E
Sbjct: 1500 PWGTAKTAAEDAPSAWGVKAVKKDASSP-WETKTATEDATTAWGRNNEKKHVLTAEVLED 1558
Query: 4516 --------TGWNNKHEKTVSGQWKKSSI----WSSSEGATNKLHPQVMQEESPLKESLVT 4659
+GW ++ + W+ S+ WS G +K+ +Q + ++
Sbjct: 1559 SKAREDATSGWGTENAENAQSTWRTSTESENGWSGRGG--SKVESTDVQSQKAVENPKGW 1616
Query: 4660 NMMEERVSQKEKNWDSSVGKGW--------------SENEVQGQWGAHKEPAAESHAWDK 4797
N V K + G GW + + W A+ AW++
Sbjct: 1617 NDFSAGV---RKPQTENAGSGWGMKGSEKKGDIELEQDESTRHSWKQKSADASSQGAWER 1673
Query: 4798 EGSPVKSR 4821
+ SP S+
Sbjct: 1674 QKSPDTSK 1681
Score = 211 bits (536), Expect = 4e-51
Identities = 140/433 (32%), Positives = 201/433 (46%), Gaps = 38/433 (8%)
Frame = +1
Query: 4105 TGSWAGWSKPNQSTEPSGDAPSSDGWGSMG----------SQKELSNP--WNN---KVKE 4239
T W + N + S +GW G SQK + NP WN+ V++
Sbjct: 1566 TSGWGTENAENAQSTWRTSTESENGWSGRGGSKVESTDVQSQKAVENPKGWNDFSAGVRK 1625
Query: 4240 PKETKRTEDDGKAQWDHWNKPRDSDVKLLNE----HEYQSASGQMGAWLGWETNTVPSSS 4407
P+ TE+ G W + D++L + H ++ S + WE P +S
Sbjct: 1626 PQ----TENAGSG-WGMKGSEKKGDIELEQDESTRHSWKQKSADASSQGAWERQKSPDTS 1680
Query: 4408 QVS---NISKSLESPRWDDVDSHKNPTNAW--EKQGEEVKETGWNNKHEKTV-SGQWKKS 4569
+ + S + W S W EK + W + + G W +
Sbjct: 1681 KGTWEQPKSAEMSHGAWGQQKSPDVSQGVWGLEKPASTNSQGSWGQQKSPEIPQGNWGQQ 1740
Query: 4570 SIWSSSEGATNKLHPQVMQEESPLKESLVTNMMEERVSQKEKNWDSSVGKGWSENEVQGQ 4749
+ S+G Q++SP + +W S+ Q
Sbjct: 1741 TSPDISQGTWG-------QQKSP--------------EMSQGSWGQQKPSDTSQPATVNQ 1779
Query: 4750 WGAHKEPAAESHA-WDKEGSPVK------SRAWKTDVKLVKGK--KPTGSTHGWN----A 4890
W + E A E H W G K R+W + KGK +P S N
Sbjct: 1780 WDSQSEAAVERHQQWGHNGDSNKRKRFEGGRSWGPNAGEWKGKNSRPAKSPGMVNDDSSV 1839
Query: 4891 SGVFTATRQRLDQFTSEEQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIF 5070
+ ++TATRQRLD FTSEEQD+LS +EP M SIRRI+HQ+ DGD L +D S+ILD +F
Sbjct: 1840 AAIYTATRQRLDIFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGDQLSAEDHSFILDKVF 1899
Query: 5071 SYHPDKAGKTGSGVDYITVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPES 5250
++HP+K K GSG+DY TV++H +Q+SRC +++STDGR EDFSYRKCL+N I+ KYPE
Sbjct: 1900 NFHPEKEAKMGSGIDYFTVDRHGSFQESRCLFVISTDGRKEDFSYRKCLQNMIKEKYPEL 1959
Query: 5251 AMSFIGKYFRKPQ 5289
A +F KYF +P+
Sbjct: 1960 AEAFNDKYFSRPR 1972
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 1616 bits (4184), Expect = 0.0
Identities = 891/1860 (47%), Positives = 1171/1860 (62%), Gaps = 112/1860 (6%)
Frame = +1
Query: 58 VDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPGQCD 237
++G I I+F+LAT EIC +SIS I H +QLTN FLGLPLE GKCE+CG EP +C+
Sbjct: 10 LEGEIVGIKFALATHHEICIASISGSAINHPSQLTNSFLGLPLEFGKCESCGATEPDKCE 69
Query: 238 GHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSERTSNSPCSNCLDIPQI 417
GHFGYI LP+PIYHP+H C + QI
Sbjct: 70 GHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKSTSGGLADRLLGVCCEEASQI 129
Query: 418 SIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVLEILKRFP 597
SI++ DG+ YLELK PS+SR + G WNFL++YGYRYG + R LL EV EIL+R P
Sbjct: 130 SIRD-RASDGASYLELKLPSRSRLQAGCWNFLERYGYRYGSDYTRPLLAREVKEILRRIP 188
Query: 598 EETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKKVLKQVDI 777
EETRK+L+AKG+ PQ+GYIL+ LPVPPNCLSVPDVSDG S MS D S LK VLK+V
Sbjct: 189 EETRKKLTAKGHIPQEGYILEYLPVPPNCLSVPDVSDGYSSMSVDPSRIELKDVLKKVIA 248
Query: 778 IKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADDSATRVWL 957
IK+SRSG +FE+H EAND+ V YL +RG AKA N++ R+G +K +D S+++ W
Sbjct: 249 IKSSRSGETNFESHKAEANDMFRVVDTYLQVRGTAKAARNIDMRYGVSKISDSSSSKAWT 308
Query: 958 EKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKAHLQDLVD 1137
+KMRTLFIRKGSGFSSRSV++GDAY+ V+E+G+P+EIAQRITFEE+V+ N +LQ LVD
Sbjct: 309 QKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNIGYLQKLVD 368
Query: 1138 KKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKHSLQAFSI 1317
KLCL+Y G++TYSLR+GSKGHT L+ GQ+VHRR++DGD+VFINR P+THKHSLQA +
Sbjct: 369 DKLCLSYTQGSTTYSLRDGSKGHTVLKPGQVVHRRVIDGDVVFINRPPTTHKHSLQALRV 428
Query: 1318 YVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLSSHSANLN 1497
YVH D+TVKINPL+C P ADFDGDCV L+YPQSL+AKAE +ELFSVE+QLLSSH+ L
Sbjct: 429 YVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLI 488
Query: 1498 LQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTALQILQCA 1677
LQ+ D+LLSL++M + F +KATAQQL M S L PA+ K S +G WT QILQ A
Sbjct: 489 LQMGCDSLLSLRVMLEGVFLDKATAQQLAMYGSLTLPPPALRKSSKSGPAWTVFQILQLA 548
Query: 1678 LPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVFNSLQPLL 1857
P +L C GDRFM+ S++L+ DF D + S+ NEI++S+F +KG KE L F+SLQPLL
Sbjct: 549 FPERLSCKGDRFMVDGSDLLKFDFGVDAMASIINEIVTSIFLEKGPKETLGFFDSLQPLL 608
Query: 1858 MENIFLEGCSITLKDFIIPKSVMEDIQ-MNVQGVSPLLNAMRSGYDELLEMQLDNQLKSV 2034
ME++F EG S++L+D + ++ M+ I + ++ +SP+++ +R Y + E+QL+N L V
Sbjct: 609 MESLFAEGFSVSLEDLSMSRADMDVIHNLIIREISPMVSRLRLSYRD--ELQLENSLHKV 666
Query: 2035 KLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDDMTSLFH 2214
K NF+LK ++ +LID KS S+I K+VQQ GF+G+QLSD+ KFY++TLV+DM
Sbjct: 667 KEVAANFMLKSYSMRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMALFCK 726
Query: 2215 RKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGTLFKNLM 2394
RKY G S FG++ C F+GLDPYE M HSI++REV+VRSSRGLAEPGTLFKNLM
Sbjct: 727 RKY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLM 783
Query: 2395 AILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAISNPAYKA 2574
A+LRD++I DGTVRN CSN ++QF YG + L+ AGE VGVLAATA+SNPAYKA
Sbjct: 784 AVLRDIVITNDGTVRNTCSNSVVQFTYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKA 843
Query: 2575 VLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAYIVWNRL 2754
VLDST +SN SWE MKEVLLC+VNF+N DRRVILYLN+C CGKR+C+ENAAY V N+L
Sbjct: 844 VLDSTANSNSSWEQMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAAYTVRNKL 903
Query: 2755 KRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVLLKCQET 2934
K+ SLKD AV FL+EY+KQ+T E L GHIH DK L+D N+SM ++L KC++
Sbjct: 904 KKVSLKDTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDKTLLQDWNISMQDILQKCEDV 963
Query: 2935 ISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDALEKISL 3114
I++ +KKK K+ LSVSECC FQ C + +PCL FS+ T D LE+
Sbjct: 964 INSLGQKKKKKATDDFKRTSLSVSECCSFQDPCGRKDSDMPCLMFSYSATDPD-LERTLD 1022
Query: 3115 IMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXXXXXXXX 3294
++ N I PVLLETV+KGDPR+ +ANIIW S D++TW+RN +R+GE
Sbjct: 1023 VLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIRNCHASRRGEWVLDVTVEKSAVK 1082
Query: 3295 GSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSVKMVAKG 3474
SGDAWR+V+D+CL V HLIDTKRSIPY+IKQVQEL+G+SCAF+Q V+RLS SV+MV+KG
Sbjct: 1083 QSGDAWRVVIDACLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRMVSKG 1142
Query: 3475 VLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFERAAEKCH 3654
VLK+H++LLA++MTC+GN++GF GGYKAL RSL I PF EATL TPR+CFE+AAEKCH
Sbjct: 1143 VLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRRCFEKAAEKCH 1202
Query: 3655 ADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSSNGRGL 3834
DSLS++V SCSWGK V VGTG++FE+LWN+KE + DV++FL +VR ++N
Sbjct: 1203 TDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVRSTTNADAY 1262
Query: 3835 DTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNENSDRSN 4014
+ G ++ + E+ E SPE + G+P F+D QN+ P N ++S+
Sbjct: 1263 -VSSPGFDVTEEEM----AEWAESPERDSALGEPKFEDSAEFQNLHDEGKPSESNWEKSS 1317
Query: 4015 WEINSFESGAR-------------ERNGEQR-----------WNSNSAGVVTPKTGSWAG 4122
N G+ E N E+ WN+ + K+ S
Sbjct: 1318 SWDNGCSGGSEWGVSKNTGGEANPESNWEKTTNVEKEDAWSSWNTKKDAQESSKSDSGVA 1377
Query: 4123 W----------SKPNQSTEPS--------GDAPSSDGWG-SMGSQKELSNPWNNKVKEPK 4245
W + PN T P+ + P+SD WG GS K P
Sbjct: 1378 WGLKTKDDDADTTPNWETRPAQTDSIVPENNEPTSDVWGHKSGSDKSWDKKNGGTESAPA 1437
Query: 4246 ETKRTEDDGKAQWDHWNKPRDSDVKLLNEH-----EYQSASGQMGAWLGWETNTVPSSSQ 4410
T+ D N +SD E S +G +G W + T +
Sbjct: 1438 AWGSTDAAVWGSSDKKNSETESDAAAWGSRDKKNSEVGSGAGVLGPWNKKSSKTESDGAT 1497
Query: 4411 VSNISKSLE-SPRWDDVDSHKNPTN----AWEKQGEEVKET--------GWNNKHEKTVS 4551
+ K+ + W D T+ AW Q + ET W+ K +T S
Sbjct: 1498 WGSSDKTKSGAAAWSSWDKKNMETDSEPAAWGSQSKNKPETESGPSTWGAWDTKKSETES 1557
Query: 4552 GQ--W----KKSSIWSSSEGATNKLHPQVMQEESP-----LKESLVTNMMEERVSQKEKN 4698
G W KK+S S A + ES ++ V ++ S+ E +
Sbjct: 1558 GPAGWGIVDKKNSETESGPAAMGNWDKKKSNTESGPAAWGSTDAAVWGFSDKNNSETESD 1617
Query: 4699 ---WDSSVGKGWSENE----VQGQWGAHKEPAAESHAWDKEGSP------VKSRAWKTDV 4839
W S K SE E G WG AA A + + +P KSR K D
Sbjct: 1618 AAAWGSR-DKKTSETESGAAAWGSWGQPTPTAANEDANEDDENPWVSLKETKSRD-KDDK 1675
Query: 4840 KLVKGKKPTG---STHGWNASG-----------------------VFTATRQRLDQFTSE 4941
+ ++ P S+ GW+ G +FTATRQRLD FTSE
Sbjct: 1676 ERIQWGNPAKKFPSSGGWSNGGGADWKGKRNHTPRPPRSEDNLAPMFTATRQRLDSFTSE 1735
Query: 4942 EQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGKTGSGVDYI 5121
EQ++LSDVEP+M ++R+I+H + DGDP+ DD++++L+ I ++HP K K GSGVD+I
Sbjct: 1736 EQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFI 1795
Query: 5122 TVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYFRKPQTGAN 5301
TV+KH+ + DSRCF++VSTDG +DFSYRK L N++ KYP+ A FI KYF KP+ N
Sbjct: 1796 TVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMMKYPDRAEEFIDKYFTKPRPSGN 1855
>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
arietinum]
Length = 2263
Score = 1607 bits (4160), Expect = 0.0
Identities = 848/1700 (49%), Positives = 1135/1700 (66%), Gaps = 83/1700 (4%)
Frame = +1
Query: 49 TTTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPG 228
++ +D ++ I+FS+AT EI T+SISD I+H++QL NPFLGLPLE G+CE+CGT+E G
Sbjct: 7 SSVLDAKVIGIRFSMATRHEISTASISDSTISHASQLANPFLGLPLEFGRCESCGTSEAG 66
Query: 229 QCDGHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSE----RTSNSPCSN 396
+C+GHFGYI LP+PIYHPSH S ++ SPC
Sbjct: 67 KCEGHFGYIELPVPIYHPSHVTELKKILSLVCLNCLKLKKTKFPSSSSGLAQSLLSPCCE 126
Query: 397 CLDIPQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVL 576
++ Q+SI+E T DG+ YL LK SKS+ DGFW FL+KYGYRYG + R LLPCEV+
Sbjct: 127 DVNAAQVSIREVKTADGACYLALKV-SKSKMHDGFWGFLEKYGYRYGGDHTRALLPCEVM 185
Query: 577 EILKRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKK 756
EI+KRFP+ET ++L+ KGYFPQDGY+L+ LPVPPNCLSVP VSDG S+MSSD ++++L+K
Sbjct: 186 EIIKRFPQETNRKLAIKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSVMSSDPAMTILRK 245
Query: 757 VLKQVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADD 936
+L++V+II++SRSG P+FE+H +EANDLQ V +YL +RG +KA ++ TR+G NKE +D
Sbjct: 246 LLRKVEIIRSSRSGEPNFESHQVEANDLQSVVDQYLQVRGTSKATRDIETRYGVNKELND 305
Query: 937 SATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKA 1116
S+T+ WLEKMRTLFIRKGSGFSSR+V++GD Y++++E+G+PLE+AQRITFEE+V+ N
Sbjct: 306 SSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERVSIHNIR 365
Query: 1117 HLQDLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKH 1296
+LQ LVD+ +CLTYK+G STYSLREGSKGHT+L+ GQ+VHRRIMDGD+VFINR P+THKH
Sbjct: 366 YLQKLVDENMCLTYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDVVFINRPPTTHKH 425
Query: 1297 SLQAFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLS 1476
SLQA +Y+H DHTVKINPLICGP GADFDGDCV L+YPQSLAAKAE LELFSVE+QLLS
Sbjct: 426 SLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLS 485
Query: 1477 SHSANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTA 1656
SHS NLNLQL D+LLSLK++ K F ++A A Q+ M +S L PA+ K S S WT+
Sbjct: 486 SHSGNLNLQLSTDSLLSLKMLVKSCFLDRAAANQMAMFLSLPLPMPALFKAGSGDSYWTS 545
Query: 1657 LQILQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVF 1836
+Q+LQCALPS DC+G R++I Q EIL DF RDLL S+ NE+ +S+F+ +G KEALN F
Sbjct: 546 VQMLQCALPSSFDCTGGRYLIRQREILEFDFTRDLLPSIINEVAASIFFSQGPKEALNFF 605
Query: 1837 NSLQPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLD 2016
+ LQP LMENIF G S+ L+DF I ++V I ++ +SPLL+ +R Y EL+ QL+
Sbjct: 606 DVLQPFLMENIFAHGYSVGLQDFSISRAVKRVINRSIGKISPLLHQLRVVYKELVAQQLE 665
Query: 2017 NQLKSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDD 2196
++ ++LPV+NF LK + L DLID+KS+S++ KVVQQ+GF+G QL +RGKFYS+ LV+D
Sbjct: 666 KHMQDIELPVINFALKSTKLGDLIDSKSKSALDKVVQQIGFLGQQLFERGKFYSKGLVED 725
Query: 2197 MTSLFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGT 2376
+ S FH K +G PS FGL+ C F+GLDPYE +VHSI++RE++VRSSRGL+EPGT
Sbjct: 726 VGSHFHVKCFYDGDGYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIVRSSRGLSEPGT 785
Query: 2377 LFKNLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAIS 2556
LFKNLMAILRDV+ICYDGTVRNVCSN +IQFEYG ++ + L+PAGE VGVLAAT++S
Sbjct: 786 LFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDKSQPLFPAGEPVGVLAATSMS 845
Query: 2557 NPAYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAY 2736
NPAYKAVLD++PSSN SWE MKE+LLC+VNF+N+ DRRVILYLNDC CG+ YC+ENAAY
Sbjct: 846 NPAYKAVLDASPSSNSSWEFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRSYCRENAAY 905
Query: 2737 IVWNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVL 2916
+V N+L++ SLKD A+ F +EYQ+Q+ + S G LVGHIH ++ LE L ++M EV
Sbjct: 906 LVKNQLRKVSLKDAALDFTVEYQQQRRRNDGSEDAG-LVGHIHLNEAMLEKLKINMSEVY 964
Query: 2917 LKCQETISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDA 3096
KCQE +++ +KKK + HF +K L F +SC S PC+ W D GD
Sbjct: 965 QKCQERLNSFSRKKK--VFHFFRKTEL------FFSESCSSLNSSAPCVTILWPD--GDD 1014
Query: 3097 LEKISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXX 3276
L++ + ++A++ICPVLL+T+++GDPR+ +ANIIWV+P +TWVRNP ++ GE
Sbjct: 1015 LDQTTKVLADMICPVLLDTIIQGDPRISSANIIWVNPGTNTWVRNPSKSSNGELALDVIL 1074
Query: 3277 XXXXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSV 3456
SGDAWRI++DSCLPV HLIDT+RS PYAIKQ+QEL+GISC FDQ ++RL+ SV
Sbjct: 1075 EKEAVKQSGDAWRIILDSCLPVLHLIDTRRSTPYAIKQIQELLGISCTFDQAIQRLAASV 1134
Query: 3457 KMVAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFER 3636
+MVAKGVL++HL+LLASSMTC GN++GF GGYK L R L I VPF +ATLFTPRKCFER
Sbjct: 1135 RMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFTPRKCFER 1194
Query: 3637 AAEKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMS 3816
AAEK HADSLSSIVASCSWGKHVAVGTG+RF+I+W+ KE++SN+ DV+NFL++V+
Sbjct: 1195 AAEKRHADSLSSIVASCSWGKHVAVGTGSRFDIVWDPKEVKSNEIEGMDVYNFLNMVKGL 1254
Query: 3817 SNGRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNE 3996
+NG + CLG +IDDL LD+++ + +SPEH + FD+ N TS ++
Sbjct: 1255 ANGDEENNACLGEDIDDL-LDDDNMDWGMSPEHTSGF-DAVFDESFELLNGSTSN-GWDS 1311
Query: 3997 NSDRSNWEINSFESGARERN---------------GEQRWNSNSAGVVTPKTGSWAGWSK 4131
N D++ N + + ++ Q+W ++ + K+G+W +
Sbjct: 1312 NKDQNKTTTNDWSGWGQNKSEIQVDVAETDQWGSGSTQKWKADITKEDSSKSGAWETGTN 1371
Query: 4132 PNQSTEPS---------GDAPSSDGWGSMGSQK---------ELSNPW-------NNKVK 4236
N S +PS D W S SQK S W N++
Sbjct: 1372 QN-SDQPSWGGNKTGVQDDGVVKTQWESGSSQKLKSDINKDSSKSGAWEASTNQNNDQPS 1430
Query: 4237 EPKETKRTEDDG--KAQWDHWNKPR-DSDVKLLNEHEYQSASGQMGAWLGWETNTVPSSS 4407
+ +DDG K QW+ + + +DV Q S + GA WE NT +S
Sbjct: 1431 WGRNKSGVQDDGAVKTQWESGSSQKWKTDV-------IQENSSKSGA---WEANTNKNSD 1480
Query: 4408 Q---------------VSNISKSLESPRW--DDVDSHKNPTNAWEKQGEEVKETGWNNKH 4536
Q V +S S +W D + + + AWE + + K+
Sbjct: 1481 QPSWGKNKSGIQDDGAVKTQWESGSSQKWKTDVIQEDSSKSGAWEANTNKNSDPPSWGKN 1540
Query: 4537 EKTVSGQWKKSSIWSSSEGATNKLHPQVMQEES--PLKESLVTNMMEERVS--------- 4683
+ + + W S G++ K V+QE+S P TN ++ S
Sbjct: 1541 KSGIQDDGAVKTQWES--GSSQKWKTDVIQEDSSKPGAWEANTNKNSDQPSWGKNKSGIQ 1598
Query: 4684 --QKEKNWDSSVGKGWSENEVQ------GQWGAHKEPAAESHAWDKEGSPVKSRAWKTDV 4839
++ W+S + W VQ G WGA+ ++ +W K S ++ A
Sbjct: 1599 DGAEKAQWESGSSQKWKAGVVQEDSSKSGSWGANTNQNSDQPSWGKNKSGIQDGA----- 1653
Query: 4840 KLVKGKKPTGSTHGWNASGV 4899
K + +GS+ W A V
Sbjct: 1654 --EKAQWESGSSQKWKAGVV 1671
Score = 226 bits (577), Expect = 7e-56
Identities = 157/477 (32%), Positives = 227/477 (47%), Gaps = 44/477 (9%)
Frame = +1
Query: 3991 NENSDRSNWEINSFESGARERNGEQRWNSNS-----AGVV---TPKTGSWAGWSKPNQST 4146
N+NSD+ +W N +SG ++ + +W S S AGVV + K+GSW + N
Sbjct: 1738 NQNSDQPSWGKN--KSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKSGSWGANTNQNSDQ 1795
Query: 4147 EPSG-------DAPSSDGWGSMGSQKE------LSNPWNNKVKEPKETKRTEDDGKAQWD 4287
G D W S SQK S WN + + ++ D+ K
Sbjct: 1796 SSWGRNKSGEQDGAERSQWASGSSQKSGAWEANPSQKWNADLVQEDSSRSNNDESKTNSG 1855
Query: 4288 HWNKPRDSDVKLLNEHEYQSASGQMGAWLGWETNTVPSSSQVSNISKSLESPRWDDVDSH 4467
W S ++ HE +S Q +W + +Q S S + + D
Sbjct: 1856 GWKAWGSSKTEV---HEGESKKVQEDSWKSQKWKAGADVTQDSPKMGSWGATK-DATKPK 1911
Query: 4468 KNPTNAWEKQGEEVKETGWNNKHEKTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKE 4647
N ++W K+ +E+ + G EK W S A +K VMQE+S
Sbjct: 1912 SNDWSSWGKKKDEIHDGG----SEKIQEDSWS-----SGKRKAESKSVADVMQEDSSK-- 1960
Query: 4648 SLVTNMMEERVSQKEKNWDSSV---GKGWSENEVQGQ--WGAHKE--PAAESHAWDKE-- 4800
+N E + + +WD+ V W + + Q W + E P A S WD +
Sbjct: 1961 ---SNTWEHKSDDVKDSWDAKVPVANSSWGKPKSQENQPWDSKNESNPTASSRGWDSQVA 2017
Query: 4801 ------------GSPVKSRAWKTDVKLVKGKKPTGSTHG-W-NASGVFTATRQRLDQFTS 4938
G P + K + +G + GS G W N + RLD ++S
Sbjct: 2018 SANSDSDKNFQWGKPGRESFKKNRFEGSQGSQGWGSNAGDWKNKNRPARPPGPRLDLYSS 2077
Query: 4939 EEQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGKTGSGVDY 5118
EEQDIL D+EPI+ SIRRI+ Q DGDPL +DQ Y+L+N+F +HPDK K G G+D+
Sbjct: 2078 EEQDILKDIEPIVQSIRRIMQQQGYNDGDPLAAEDQQYVLENVFEHHPDKETKMGVGIDH 2137
Query: 5119 ITVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYFRKPQ 5289
+ V++HS +Q+SRCFY+V DG+ EDFSYRKCLE+F+R KY ++A SF GKYFRKP+
Sbjct: 2138 VMVSRHSNFQESRCFYVVLKDGKKEDFSYRKCLESFVRKKYADTAESFCGKYFRKPR 2194
Score = 63.9 bits (154), Expect = 8e-07
Identities = 94/375 (25%), Positives = 142/375 (37%), Gaps = 72/375 (19%)
Frame = +1
Query: 3991 NENSDRSNWEINSFESGAR---------ERNGEQRWNSNSAGVVTPKTGSWAGWSKPNQS 4143
N+N+D+ +W N +SG + E Q+W ++ + K+G+W + N S
Sbjct: 1423 NQNNDQPSWGRN--KSGVQDDGAVKTQWESGSSQKWKTDVIQENSSKSGAWEANTNKN-S 1479
Query: 4144 TEPSGDAPSS----DG-----WGSMGSQK----------ELSNPWN---NKVKEP----K 4245
+PS S DG W S SQK S W NK +P K
Sbjct: 1480 DQPSWGKNKSGIQDDGAVKTQWESGSSQKWKTDVIQEDSSKSGAWEANTNKNSDPPSWGK 1539
Query: 4246 ETKRTEDDG--KAQWDHWNKPR-DSDVKLLNEHEYQSASGQMGAWLGWETNTVPSSSQVS 4416
+DDG K QW+ + + +DV Q S + GAW E NT +S Q S
Sbjct: 1540 NKSGIQDDGAVKTQWESGSSQKWKTDV-------IQEDSSKPGAW---EANTNKNSDQPS 1589
Query: 4417 ------NISKSLESPRWDDVDSHKNPTNAWEKQGEEVKETGWN-NKHEKTVSGQW--KKS 4569
I E +W+ S K A Q + K W N ++ + W KS
Sbjct: 1590 WGKNKSGIQDGAEKAQWESGSSQK--WKAGVVQEDSSKSGSWGANTNQNSDQPSWGKNKS 1647
Query: 4570 SIWSSSE------GATNKLHPQVMQEESPLKES--LVTNMMEERVS-----------QKE 4692
I +E G++ K V+QE+S S TN ++ S ++
Sbjct: 1648 GIQDGAEKAQWESGSSQKWKAGVVQEDSSKSGSWGANTNQNSDQPSWGKNKSGIQDGAEK 1707
Query: 4693 KNWDSSVGKGWSENEVQ------GQWGAHKEPAAESHAWDKEGSPVKSRAWKTDVKLVKG 4854
W+S + W VQ G WGA+ ++ +W K S ++ A K
Sbjct: 1708 AQWESGSSQKWKAGVVQEDSSKSGSWGANTNQNSDQPSWGKNKSGIQDGA-------EKA 1760
Query: 4855 KKPTGSTHGWNASGV 4899
+ +GS+ W A V
Sbjct: 1761 QWESGSSQKWKAGVV 1775
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 1607 bits (4160), Expect = 0.0
Identities = 849/1680 (50%), Positives = 1126/1680 (67%), Gaps = 84/1680 (5%)
Frame = +1
Query: 49 TTTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPG 228
++ +D I I+FSLA +EIC ++ISD PITH++QL+NPFLGLP+E GKCE+CGT+EPG
Sbjct: 8 SSILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCESCGTSEPG 67
Query: 229 QCDG--------------------------HFGYIGLPIPIYHPSHXXXXXXXXXXXXXX 330
+C+G HFGYI LPIPIYHP+H
Sbjct: 68 KCEGIDFFFXIFNVLHNTTXQVVFIFHLSGHFGYIELPIPIYHPNHITELKKMLSLLCLK 127
Query: 331 XXXXXXXXXD-----VSERTSNSPCSNCLDIPQISIKECTTKDGSQYLELKTPSKSRFRD 495
+ER +S C D Q++I+E DG+ YL+LK PS++ ++
Sbjct: 128 CLKMKKTKFPSKNIGFAERLLSSCCE---DASQVTIREAKKADGASYLQLKVPSRTSLQE 184
Query: 496 GFWNFLDKYGYRYGDEKCRQLLPCEVLEILKRFPEETRKRLSAKGYFPQDGYILQKLPVP 675
FW+FL++YG+RYGD R LL V E+LK+ P ETRK+L+ +GY+PQDGYILQ LPVP
Sbjct: 185 RFWDFLERYGFRYGDNFTRTLLSVMVKEMLKKIPNETRKKLAGRGYYPQDGYILQYLPVP 244
Query: 676 PNCLSVPDVSDGKSIMSSDLSVSMLKKVLKQVDIIKNSRSGPPSFEAHIIEANDLQLAVA 855
PNCLSVP++SDG ++MSSD +VSMLKK+LKQV+IIK SRSG P+FE+H +EANDLQLAV
Sbjct: 245 PNCLSVPEISDGVTVMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVD 304
Query: 856 EYLNLRGVAKAPHNMNTRFGANKEADDSATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQ 1035
+YL +RG KA ++ RFG NKE +D +T+ WLEKMRTLFIRKGSGFSSRSV++GDAY+
Sbjct: 305 QYLQVRGTVKASRGIDARFGVNKELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 364
Query: 1036 RVDEIGLPLEIAQRITFEEKVTERNKAHLQDLVDKKLCLTYKDGASTYSLREGSKGHTFL 1215
V+EIG+P E+AQRITFEE+V+ N +LQ+LVDKKLCLTY+DG+S YSLREGS GHT+L
Sbjct: 365 LVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYL 424
Query: 1216 RVGQLVHRRIMDGDIVFINRTPSTHKHSLQAFSIYVHSDHTVKINPLICGPFGADFDGDC 1395
+ GQ+VHRRIMDGDIVFINR P+THKHSLQA +Y+H DH VKINPLICGP ADFDGDC
Sbjct: 425 KPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKINPLICGPLSADFDGDC 484
Query: 1396 VQLYYPQSLAAKAEALELFSVEQQLLSSHSANLNLQLVNDALLSLKIMFKIFFFNKATAQ 1575
+ L+YPQS+AAKAE L LFSVE+QLLSSHS NLNLQL ND+LLSLK+MF+ +F KA AQ
Sbjct: 485 IHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFRKYFLGKAAAQ 544
Query: 1576 QLVMSVSSRLQGPAVLKVSSTGSRWTALQILQCALPSQLDCSGDRFMICQSEILRLDFNR 1755
QL M VSS L PA+L V S WTALQILQ LP+ DC GD ++I S L+ DF+R
Sbjct: 545 QLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIKNSNFLKFDFDR 604
Query: 1756 DLLQSLWNEIISSVFYKKGSKEALNVFNSLQPLLMENIFLEGCSITLKDFIIPKSVMEDI 1935
D + SL NEI++S+F++KG +E L F+SLQPLLME+IF EG S+ L D+ +P + ++ +
Sbjct: 605 DAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQAL 664
Query: 1936 QMNVQGVSPLLNAMRSGYDELLEMQLDNQLKSVKLPVVNFILKLSALADLIDAKSESSIG 2115
Q N+Q +SPLL +RS ++EL+E+QL+N L+SVK+P NFILKLS+L L D+KSES+I
Sbjct: 665 QKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLSSLGKLFDSKSESAIN 724
Query: 2116 KVVQQVGFMGIQLSDRGKFYSRTLVDDMTSLFHRKYAVNGVDPPSEAFGLITSCLFNGLD 2295
KVVQQ+GF+G+QLSD+G+FYS++L++D+ SLFH +Y+ + +D PS FGL+ C F+GLD
Sbjct: 725 KVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLD 784
Query: 2296 PYEAMVHSISSREVLVRSSRGLAEPGTLFKNLMAILRDVIICYDGTVRNVCSNFLIQFEY 2475
PYE MVHSIS+REV+VRSSRGL EPGTLFKNLMAILRDV+ICYDGTVRNVCSN +IQ EY
Sbjct: 785 PYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEY 844
Query: 2476 GAKAAT-SANCLYPAGEAVGVLAATAISNPAYKAVLDSTPSSNLSWELMKEVLLCRVNFK 2652
G KA L+P GE VGVLAATA+S PAYKAVLDSTPSSN SW++MKE+LLC+V+FK
Sbjct: 845 GMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFK 904
Query: 2653 NDITDRRVILYLNDCGCGKRYCKENAAYIVWNRLKRFSLKDIAVAFLIEYQKQKTSPESS 2832
N+ DRRVILYLN+C CG++YC ENAAY+V + LK+ +LKD A+ F+IEY +Q T S
Sbjct: 905 NEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQPTP--SG 962
Query: 2833 LGRGPLVGHIHFDKKR--LEDLNLSMHEVLLKCQETISASRKKKKDPLGHFLKKIFLSVS 3006
LG G LVGH+H ++ R L++LN+ M EVL +CQET+S+ +KKKK + H L+ S+S
Sbjct: 963 LGPG-LVGHVHLNRVRMLLKELNIDMTEVLRRCQETMSSFKKKKKK-IAHALR---FSIS 1017
Query: 3007 ECCCFQQSCDSELFPVPCLQFSWLDTSGDALEKISLIMANIICPVLLETVVKGDPRVDTA 3186
E C F Q E +PCL F W T LE+ + I+A+I+ P+L ET++KGDPR+ +A
Sbjct: 1018 EHCAFHQWNGEESIDMPCLIF-WHQTRDVHLERTAHILADIVFPLLSETIIKGDPRIKSA 1076
Query: 3187 NIIWVSPDISTWVRNPGRTRKGESXXXXXXXXXXXXGSGDAWRIVMDSCLPVFHLIDTKR 3366
++IW+SPD ++W +NP R + GE +GDAWR V+D CLPV HLIDT+R
Sbjct: 1077 SVIWISPDSTSWQKNPSRWQDGELALDVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRR 1136
Query: 3367 SIPYAIKQVQELVGISCAFDQVVERLSRSVKMVAKGVLKDHLMLLASSMTCTGNVIGFYV 3546
S+PYAIKQVQEL+GISCAFDQ+++RLS+SV MV+KGVL DHL+LLA+SMTCTGN+IGF
Sbjct: 1137 SVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNS 1196
Query: 3547 GGYKALFRSLKIHVPFAEATLF----------------------------TPRKCFERAA 3642
GGYKAL R+L I VPF EATLF TPRKCFE+AA
Sbjct: 1197 GGYKALSRALNIQVPFTEATLFVSPFHSLVLSLYMKFNFFFLFFLNGXYTTPRKCFEKAA 1256
Query: 3643 EKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSSN 3822
EKCH DSLSSIVASCSWGKHVAVGTG+RF+ILW++KE+ QD V DV+NFLH+VR S
Sbjct: 1257 EKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVR-SGK 1315
Query: 3823 GRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNENS 4002
+ CLG EI+D+ +++E E+ LSPE KP F+D ++ +
Sbjct: 1316 SEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEFEHC------LDNYP 1369
Query: 4003 DRSNWEINSFESGARERNGEQRWNSNSAGVVTPKT--GSWAGWSK--------PNQSTEP 4152
S WE + GA G Q W SN G T + W+GW + N
Sbjct: 1370 GESKWE-KAPSLGAVSTGGGQ-WESNENGKATNSSDGNDWSGWGRKAEPDVTVTNAQENT 1427
Query: 4153 SGDA-PSSDGWGSMGSQKELSNPWNN-KVKEPKETKRTEDDGKAQWDHWNKPRDSDVKLL 4326
S A ++ WG+ + N W+N KE + T + + W+ K
Sbjct: 1428 SNSAWDTTSSWGNKATNSSNDNDWSNCSTKEVERDSFTSMEKTPKSGGWDSASTWGTKTK 1487
Query: 4327 NE-HEYQSASGQMGAWLGWETNTVPSSSQV-SNISKSLESPRWDDVDSHKNPTNAWEKQG 4500
++ + ++A + W G + + + + +S W+D + + +
Sbjct: 1488 DDSFKRETAPKKSSQWSGLQKDKAETQDAFHKKAEMASKSGGWEDKAWSRGTSKTEDNWS 1547
Query: 4501 EEVKETGWNNKHE----KTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKESLVTNMM 4668
+VK+ + + + + + W + W+ + G ++ ++ + V++
Sbjct: 1548 SQVKDKAESFQVQVQEVSSKTNGWGSTGGWTKNSGGDHQSEAGWNDGQASMDREKVSDRW 1607
Query: 4669 EERVSQK-EKNWDSSVGK---GWSENEVQGQWGAHKEPAAESHAWDKEGSPVKSRAWKTD 4836
+ + +QK E + SS G G S++ + H + + +H+WD++ SP S+ + D
Sbjct: 1608 DRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDHSD-SVVNHSWDRQKSPEASQGFGND 1666
Score = 236 bits (601), Expect = 1e-58
Identities = 152/491 (30%), Positives = 229/491 (46%), Gaps = 57/491 (11%)
Frame = +1
Query: 4000 SDRSNWEINSFESGARERNGEQRWNSN----------SAGVVTPKTGSWA---GWSKPNQ 4140
S WE ++ G + E W+S V+ KT W GW+K N
Sbjct: 1525 SKSGGWEDKAWSRGTSKT--EDNWSSQVKDKAESFQVQVQEVSSKTNGWGSTGGWTK-NS 1581
Query: 4141 STEPSGDAPSSDGWGSMGSQKELSNPWNNKVKEPKETKRTEDDGKA-------------- 4278
+ +A +DG SM +K +S+ W+ K + E+ +T G
Sbjct: 1582 GGDHQSEAGWNDGQASMDREK-VSDRWDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAV 1640
Query: 4279 ---------QWDH--------------WNKPRDSDVKLLNEHEYQSASGQMGAWLGWETN 4389
WD W + + DV + +S G+ +
Sbjct: 1641 DHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEG 1700
Query: 4390 TVPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQGEEVKETGWNNKHEKTVSGQWKKS 4569
+ QV+N KS ++ WD + P W+KQ W ++++ S
Sbjct: 1701 SDHGFDQVTNEQKSSDTRGWDSQEKTDKP---WDKQKSLEASQSWGSQNDSLGS------ 1751
Query: 4570 SIWSSSEGATNKLHPQVMQEESPLKESLVTNMMEERVSQKEKNWDSSVGKGWSENEVQGQ 4749
W + A+ + + + S T + + + W+ EV
Sbjct: 1752 --WGQPQRASEECSRESQDDSS-------TQFSQLKPPETSLGWEQQ-----KSPEVSHG 1797
Query: 4750 WGAHKEPAAE--SHAWDKEGSPVK-----SRAWKTDVKLVKGKKPTGSTHGWNASGVFTA 4908
WG++KE + + SH WDK+ K + WK K K P S N ++TA
Sbjct: 1798 WGSNKESSEQTSSHGWDKKNQGSKGWGGNAGEWKNR-KNRPPKSPGMSNDDANLRALYTA 1856
Query: 4909 TRQRLDQFTSEEQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDK 5088
+ QRLD FTSEEQDIL+D+EPIM SIR+++HQ+ DGDPL +DQS++L ++F++HPDK
Sbjct: 1857 SGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDK 1916
Query: 5089 AGKTGSGVDYITVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIG 5268
A K G+G+D+ V++HS +Q+SRCFY+V+TDG EDFSYRKCL+NFI+ KYP+ A F+
Sbjct: 1917 AAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVA 1976
Query: 5269 KYFRKPQTGAN 5301
KYFRKP+ N
Sbjct: 1977 KYFRKPRPNRN 1987
>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2082
Score = 1603 bits (4150), Expect = 0.0
Identities = 839/1614 (51%), Positives = 1100/1614 (68%), Gaps = 21/1614 (1%)
Frame = +1
Query: 49 TTTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPG 228
++ +DG + I+F +AT +EICT+SISD I+H++QL+NPFLGLPLE G+CE+CGT+E G
Sbjct: 7 SSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCGTSEVG 66
Query: 229 QCDGHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSE----RTSNSPCSN 396
+C+GHFGYI LPIPIYHPSH S + SPC
Sbjct: 67 KCEGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLRKTKLPASSSGLAQRLISPCCQ 126
Query: 397 CLDIPQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVL 576
+SI+E T DG+ YL LK SKS+ ++GFW+FL+KYGYRYG + R LLPCE +
Sbjct: 127 EDKAALVSIREVKTSDGACYLALKV-SKSKMQNGFWSFLEKYGYRYGGDHTRALLPCEAM 185
Query: 577 EILKRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKK 756
EI+KR P ET+K+L+ KGYFPQDGY+L+ LPVPPNCLSVP+VSDG S+MSSD S+++L+K
Sbjct: 186 EIIKRIPIETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGVSVMSSDPSITILRK 245
Query: 757 VLKQVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADD 936
+L++V+IIK+SRSG P+FE+H +EANDLQ V +Y +RG +K ++ T FG NKE
Sbjct: 246 LLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVNKELTA 305
Query: 937 SATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKA 1116
S+T+ WLEKMRTLFIRKGSGFSSR+V++GD Y+R++E+G+P+E+AQRITFEE+V N
Sbjct: 306 SSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVNIHNIR 365
Query: 1117 HLQDLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKH 1296
+LQ LVD+ LCLTYK+G STYSLREGSKGH +L+ GQ+VHRRIMDGDIVFINR P+THKH
Sbjct: 366 YLQKLVDEHLCLTYKEGGSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTTHKH 425
Query: 1297 SLQAFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLS 1476
SLQA +Y+H DHTVKINPLICGP GADFDGDCV L+YPQSLAAKAE +ELFSVE QLLS
Sbjct: 426 SLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVENQLLS 485
Query: 1477 SHSANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTA 1656
SHS NLNLQL D+LLSLK++ K FF++A A QL M + L PA+LK SS + WT+
Sbjct: 486 SHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFILLPLPRPALLKASSGDACWTS 545
Query: 1657 LQILQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVF 1836
+QILQCALP DC+G R++I QSEIL +F+RD+L + NEI +SVF+ KG KEALN F
Sbjct: 546 IQILQCALPLGFDCTGGRYLIRQSEILEFEFSRDVLPATVNEIAASVFFGKGPKEALNFF 605
Query: 1837 NSLQPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLD 2016
+ LQP LME++F EG S++L++F I +++ I+ ++ VS LL +RS Y+EL+ QL+
Sbjct: 606 DVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRKSIGKVSSLLYQLRSLYNELVAQQLE 665
Query: 2017 NQLKSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDD 2196
++ V+LP++NF LK + L DLID+KS+S+I KVVQQ+GF+G QL DRG+FYS+ LVDD
Sbjct: 666 KHIRDVELPIINFALKSTKLGDLIDSKSKSAIDKVVQQIGFLGQQLFDRGRFYSKGLVDD 725
Query: 2197 MTSLFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGT 2376
+ S FH K +G PS +GL+ C FNGLDPYE MVHSIS+RE++VRSSRGL+EPGT
Sbjct: 726 VASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGT 785
Query: 2377 LFKNLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAIS 2556
LFKNLMAILRDV+ICYDGTVRN+CSN +IQFEYG +A + L+PAGE VGVLAATA+S
Sbjct: 786 LFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGEPVGVLAATAMS 845
Query: 2557 NPAYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAY 2736
NPAYKAVLD++PSSN SWELMKE+LLC+VNF+N++ DRRVILYLNDC CG YC+ENAAY
Sbjct: 846 NPAYKAVLDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAY 905
Query: 2737 IVWNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVL 2916
V ++L++ SLKD AV F+IEYQ+Q+T E+S LVGHI+ D+ LE+L +SM V
Sbjct: 906 SVKDQLRKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMAYVF 965
Query: 2917 LKCQETISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDA 3096
KC E + + +KKK + LK I LS F +SC S PCL F WL
Sbjct: 966 DKCHERLKSFSQKKK--VNQSLKNIELS------FSESCSSSHPAAPCLTF-WLKNYDSD 1016
Query: 3097 LEKISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXX 3276
L+ ++A ICPVL +T+++GDPR+ +A+IIWVSPD +TWVRNP ++ GE
Sbjct: 1017 LDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIIL 1076
Query: 3277 XXXXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSV 3456
SGDAWR+V+D+CLPV HLIDT+RSIPYAIKQ+QEL+GISC FDQ ++R++ SV
Sbjct: 1077 EKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASV 1136
Query: 3457 KMVAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFER 3636
KMVAKGVL++HL+LLASSMTC GN++GF +GGYKAL R L I VPF +ATLFTP+KCFER
Sbjct: 1137 KMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFER 1196
Query: 3637 AAEKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMS 3816
AAEKCH DSLSSIVASCSWGKHVAVGTG++F+++W+ EI+SN+ DV++FLH+V+
Sbjct: 1197 AAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLHMVKSF 1256
Query: 3817 SNGRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNE 3996
+NG CLG +IDDL L+ E ++ +SP+HN + + F+++ N TS
Sbjct: 1257 TNGEEETDACLGEDIDDL-LEEEYMDLGMSPQHNSGF-EAVFEENPEVLNGSTS------ 1308
Query: 3997 NSDRSNWEINSFESGARERNGEQRWNSNSAGVVTPKTGSWAGWSKPNQSTEPSG--DAPS 4170
+ W+++S GE KT W+GW+ N++ G +
Sbjct: 1309 ----NGWDVSS-------NQGES------------KTNEWSGWASSNKAEIKDGRSEIAP 1345
Query: 4171 SDGWGSMGSQKE--LSNPWN-NKVKEPKETKRTEDDGKAQWDHWNKPRDSDVKLLNEHEY 4341
+ WG +Q++ SNPW+ + + + +TK E W W N+ E
Sbjct: 1346 KNSWGKTVNQEDSSKSNPWSTSTIADQTKTKSNE------WSAWGS---------NKSEI 1390
Query: 4342 QSASGQMGAWLGWETNTVPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEK---QGEEVK 4512
+GW +SS + I D S N+W K Q + K
Sbjct: 1391 P---------VGW------ASSNKTEIK---------DGRSETAQENSWGKTVNQEDSSK 1426
Query: 4513 ETGWNNK----HEKTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKESLVTNMMEERV 4680
WN H T S +W S W S++ + +QE+S ++ +E
Sbjct: 1427 SNAWNTSTTVDHANTKSNEW---SAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDN 1483
Query: 4681 SQKEKNWDSSVGKGWSENEVQGQWGAHKEPAAESH----AWDKEGS-PVKSRAW 4827
S+ WD++ +E G WG K+ E + AWD + KSR W
Sbjct: 1484 SRLGA-WDANAADQTKSSEWSG-WGKKKDVTQEDNSRLGAWDANAADQTKSRDW 1535
Score = 217 bits (552), Expect = 6e-53
Identities = 137/429 (31%), Positives = 209/429 (48%), Gaps = 17/429 (3%)
Frame = +1
Query: 4069 WNSNSAGVVTPKTGSWAGWSKPNQSTEPSGDAPSSDGWGSMGSQKELSNPWNNKVKEPKE 4248
W++N+ K+ W+GW K T+ D W + + + SN W++ K+ +
Sbjct: 1654 WDANAEDQT--KSNEWSGWGKKKDVTQE--DNSRLGAWDANAADQTKSNEWSDWGKKKEV 1709
Query: 4249 TKRTEDDGKAQWDHWNKPRDSDVKLLNEHEYQSASGQMGA------------WLGWETNT 4392
T+ ED+ + W K +D + E S SG GA W W N
Sbjct: 1710 TQ--EDNVQDSWGS-GKRKDKVTQ-----EDNSGSGGWGANRTDLAKSKSSEWSSWGKNK 1761
Query: 4393 --VPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQGEEVKETGWNNKHEKTV-SGQWK 4563
+P+ + + S S + +D +N +AW + E + G E SG WK
Sbjct: 1762 SEIPAGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWK 1821
Query: 4564 -KSSIWSSSEGATNKLHPQVMQEESPLKESLVTNMMEERVSQKEKNWDSSVGKGWSENEV 4740
+S + ++S G Q + + + + W+S + SE+E
Sbjct: 1822 AESKVGNASWGKPKSSESQAWDSHN-----------QSNQNSSSQGWESHIASANSESEK 1870
Query: 4741 QGQWGAHKEPAAESHAWD-KEGSPVKSRAWKTDVKLVKGKKPTGSTHGWNASGVFTATRQ 4917
QWG + + + ++ +G + WK + + P A Q
Sbjct: 1871 GFQWGKQGRDSFKKNRFEGSQGRGSNAGDWKN-----RNRPPR-------------APGQ 1912
Query: 4918 RLDQFTSEEQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGK 5097
RLD ++S EQD+L D+EPIM SIRRI+ Q DGDPL +DQ ++L+N+F +HPDK K
Sbjct: 1913 RLDIYSSGEQDVLKDIEPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETK 1972
Query: 5098 TGSGVDYITVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYF 5277
G+G+DY+ VNKHS +Q+SRCFY+V DG S+DFSYRKCL N+I KYP+ A SF+GKYF
Sbjct: 1973 MGTGIDYVMVNKHSSFQESRCFYVVCKDGESKDFSYRKCLANYISKKYPDLAESFLGKYF 2032
Query: 5278 RKPQTGANE 5304
RKP+ ++
Sbjct: 2033 RKPRARGDQ 2041
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 1602 bits (4148), Expect = 0.0
Identities = 874/1643 (53%), Positives = 1110/1643 (67%), Gaps = 30/1643 (1%)
Frame = +1
Query: 61 DGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPGQCDG 240
+G I I+F LA+ REICT+S+S I+H+TQL+NPFLGLPLE GKCE+CGT++ G C+G
Sbjct: 11 EGEIVGIRFGLASHREICTASVSGSSISHATQLSNPFLGLPLEFGKCESCGTSDLGNCEG 70
Query: 241 HFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSER--TSNSPCSNCLDIPQ 414
HFGYI LP+PIYHPSH V S C D Q
Sbjct: 71 HFGYIELPVPIYHPSHVSELKRMLSLLCLKCLKMKKNKFPVKNAGIAEQLLASCCQDASQ 130
Query: 415 ISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEK-----CRQLLPCEVLE 579
+SI+E KD +L LK PS + +GFWNFL++YG+RYG R LLPCEV+E
Sbjct: 131 VSIEE-VKKDTYSHLRLKVPSNKKLHEGFWNFLERYGFRYGGSPGEELLRRTLLPCEVME 189
Query: 580 ILKRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKKV 759
I K+ PEETRK+L KGYFPQDGYILQ LPVPPNCLSVP++SDG +IMS+D S SMLKKV
Sbjct: 190 IFKKIPEETRKKLVGKGYFPQDGYILQYLPVPPNCLSVPEISDGITIMSTDPSTSMLKKV 249
Query: 760 LKQVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADDS 939
L+Q +IIK+SRS P+FE+ +EAN+LQ V +YL +RG KA +++ RFG NKE +S
Sbjct: 250 LRQGEIIKSSRS-QPNFESLEVEANELQSIVNQYLQVRGSVKASRDIDARFGVNKEEKNS 308
Query: 940 ATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKAH 1119
+ +VWLEKMRTLFIRKGSGFSSRSV++GDAY+ V+E+G+P EIA+ ITFEEKV+ N +
Sbjct: 309 SRKVWLEKMRTLFIRKGSGFSSRSVITGDAYKAVNEVGIPYEIARWITFEEKVSSHNMKY 368
Query: 1120 LQDLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKHS 1299
LQ+LVD KLCLTYKDG+STYSLREGSKGHTFL++GQ+VHRRIMDGDIVFINR P+THKHS
Sbjct: 369 LQELVDNKLCLTYKDGSSTYSLREGSKGHTFLKLGQVVHRRIMDGDIVFINRPPTTHKHS 428
Query: 1300 LQAFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLSS 1479
LQA +YVH D+TVKINPLICGP ADFDGDCV L+YPQS AAKAE LELFS+E+Q+LSS
Sbjct: 429 LQALRVYVHEDNTVKINPLICGPLSADFDGDCVHLFYPQSPAAKAEVLELFSLEKQILSS 488
Query: 1480 HSANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTAL 1659
HS + LQL D+LLSLKIMFK +F +K AQQLVM SS L PA S WTAL
Sbjct: 489 HSGGMILQLACDSLLSLKIMFKTYFMDKIAAQQLVMFASSSLPQPAFWLTHSGDPFWTAL 548
Query: 1660 QILQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVFN 1839
Q+LQ ALP+ LDC GDRF+I S+IL LDFNRD+ S+ N+I +S+ +KGS+E L FN
Sbjct: 549 QVLQTALPTSLDCYGDRFLIKGSDILVLDFNRDV--SVINDIGASICSEKGSEEVLKFFN 606
Query: 1840 SLQPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLDN 2019
+LQPLLMENIF +G S+ L+DF I + V+++I ++Q +SPLL +RS Y+EL+E+QL+N
Sbjct: 607 ALQPLLMENIFAQGFSVGLEDFSISQEVIKNITKDIQLISPLLYHLRSTYNELVELQLEN 666
Query: 2020 QLKSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDDM 2199
Q++ K PV NFILK S++ +LID KS+S+I KVVQQ+GF+G+Q+SDRGKFYS+TLV+D+
Sbjct: 667 QIRFAKAPVTNFILKSSSMGNLIDPKSDSAINKVVQQIGFLGLQISDRGKFYSKTLVEDV 726
Query: 2200 TSLFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGTL 2379
+ L+ RKY N VD PS GLI SC F+GLDPYE +VHSIS+REV+VRSSRGL EPGTL
Sbjct: 727 SCLYTRKYPEN-VDYPSAEHGLIRSCFFHGLDPYEEIVHSISTREVIVRSSRGLTEPGTL 785
Query: 2380 FKNLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAISN 2559
FKNLMAILRDV+ICYDGTVRNVCSN +IQFEYG SA LYPAGE VGVLAATA+SN
Sbjct: 786 FKNLMAILRDVVICYDGTVRNVCSNSIIQFEYG---RGSARNLYPAGEPVGVLAATAMSN 842
Query: 2560 PAYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAYI 2739
PAYKAVLDS+PSSN SWELMKE+LLC+ F+N++ DRRVILYLN CGCG++YC+E A Y+
Sbjct: 843 PAYKAVLDSSPSSNSSWELMKEILLCKAIFRNELIDRRVILYLNHCGCGRKYCREQATYL 902
Query: 2740 VWNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVLL 2919
V N+LK+ SLKD AV F+IEY+ Q + + G LVGHIH ++ L+++++ M+E+L
Sbjct: 903 VQNQLKKVSLKDTAVEFMIEYKNQSSFSAVDMNAG-LVGHIHLNEVLLKEMDIGMNEILQ 961
Query: 2920 KCQETISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDAL 3099
KC+E I++ RKKK LG LKK LSVSECC F +S PCL S + D L
Sbjct: 962 KCEEAINSVRKKK---LGKHLKKAVLSVSECCTFHKSGLDGTSEFPCLLISIRENMNDTL 1018
Query: 3100 EKISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXXX 3279
E+ S I+A+ ICP LLET++KGD R+ +A I W+S D +T +R+P + GE
Sbjct: 1019 EESSKILADSICPFLLETIIKGDSRISSAKITWLSSD-TTSIRSPQNSDMGELAVDVVLD 1077
Query: 3280 XXXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSVK 3459
SGDAWRIV+DSCLPV HLIDT+RSIPY IKQ+QEL+GISCAFDQ V+RLS SV
Sbjct: 1078 KSAIKRSGDAWRIVIDSCLPVLHLIDTRRSIPYGIKQIQELLGISCAFDQAVQRLSTSVS 1137
Query: 3460 MVAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFERA 3639
MV+KGVLK+HL+LLA+SMT GN+IGF GGYKAL RSL + VPF EATL TP++CFERA
Sbjct: 1138 MVSKGVLKEHLILLANSMTYAGNLIGFNSGGYKALTRSLNVQVPFTEATLITPKRCFERA 1197
Query: 3640 AEKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSS 3819
AEKCH DSL+SIVASCSWGKHVAVGTG+RF+ILW+ +++E NQ G DV NFLH+V ++
Sbjct: 1198 AEKCHVDSLTSIVASCSWGKHVAVGTGSRFDILWDTRKVEFNQAGGVDVNNFLHMV-STA 1256
Query: 3820 NGRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNEN 3999
G T CLG EIDDL ++ E+ LSPE N + +P F+D + Q++ +P
Sbjct: 1257 YGEEASTACLGEEIDDLMPGDDIAELCLSPE-NFNSDRPVFEDIDEFQDISEKDLP---- 1311
Query: 4000 SDRSNWE-INSFESGARERNGEQRWNSNSAGVVTPKTGSWAGWSKPNQSTEPSGDAPSSD 4176
+S+W+ ++SF SG+ +G++ ++N+ G SW +K Q PS P +
Sbjct: 1312 -GKSSWDNLSSFRSGS--SSGKEWGSNNNVGTKYDVGSSWGTANKEEQEVIPSKGEP-DN 1367
Query: 4177 GWGSMGSQKELSNPWNNKVKEPKETKRTEDDGKAQWDHWNKPRDSDVKLLNEHEYQSASG 4356
W SN W NK E + + D + D + P S E S
Sbjct: 1368 SW---------SNGWENKNSGRMELETMKSDWRGDADERHNPFSS-----KPQESSKRSD 1413
Query: 4357 QMGAWLGWETNTVP---SSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQ----GEEVKE 4515
A GW TNT SSS N W DS + W + G +
Sbjct: 1414 VWDATPGWGTNTASEKVSSSTGWNSENISSGAGWSKADSDNSHAKGWNSENISSGAGWSK 1473
Query: 4516 TGWNNKHEKTVSGQWKKSSIWSS---SEGATNKLHPQVMQEESPLKESLVTNMMEERVSQ 4686
G +N H K WK +I S S+ ++ H + E+ + + S
Sbjct: 1474 AGSDNSHAK----GWKSENISSGAGWSKADSDNSHAKGWNSEN-ISSGAGWSKAGSDNSS 1528
Query: 4687 KEKNWDS---SVGKGWSENEVQGQW--GAHKEPAAESHAWDKEGSP-VKSRAWKTD-VKL 4845
K W+S S G GWS+ + G + E + W K GS ++ W ++ +
Sbjct: 1529 HAKGWNSENISSGAGWSKADSDNSHAKGWNSENISSGAGWSKAGSDNSHAKGWNSENISS 1588
Query: 4846 VKGKKPTGSTH-----GWNASGV 4899
G GS + GWN+ +
Sbjct: 1589 GAGWSKAGSDNSSHAKGWNSENI 1611
Score = 239 bits (610), Expect = 1e-59
Identities = 161/466 (34%), Positives = 228/466 (48%), Gaps = 28/466 (6%)
Frame = +1
Query: 3991 NENSDRSNWEINSFESGARERNGEQRWNSNSAGVVTPKTGSWAGWSKPNQSTEP-----S 4155
++NS W + SGA +S++ G + S AGWSK + S
Sbjct: 1573 SDNSHAKGWNSENISSGAGWSKAGSDNSSHAKGWNSENISSGAGWSKEDSDNSHAKGWNS 1632
Query: 4156 GDAPSSDGWGSMGSQKELSNPWN--NKVKEPKETKRTEDDGKAQWDHWNKPRDSDVKLLN 4329
+ S GW GS + WN N + +K D+ A+ WN D
Sbjct: 1633 ENISSGAGWSKAGSDNSHAKGWNSENISSGARWSKADSDNTHAKSTDWNTTSD------- 1685
Query: 4330 EHEYQSASGQMGAWLGWETNTVPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQGEEV 4509
++ + W GW +S S+ + PR D + N N E+ E V
Sbjct: 1686 ----RTKTMTKNTWSGWHGEKSEKEDILSTKSQQ-DLPRNSDWGAVSNRENNAERAYEFV 1740
Query: 4510 KET-----------GWNNK--HEKTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKES 4650
+ W+NK +K VSG W + S+ EG T + +E P
Sbjct: 1741 SKDQPLPDQVSEPCDWDNKLTPQKAVSG-W----LSSNDEGWTKDANSSERKE--PTDSP 1793
Query: 4651 LVTNMMEERVSQK-EKNWDSSVGKGW-------SENEVQGQWGAHKEPAAESHAWDKEGS 4806
+V N E+R S + +N +S+ W E E +W ++H G
Sbjct: 1794 VVYNSWEKRTSSEISQNVESASFNSWLPRAGDGGEVEKPNEWVKKSGSFKKNHGETSGGW 1853
Query: 4807 PVKSRAWKTDVKLVKGKKPTGSTHGWNASGVFTATRQRLDQFTSEEQDILSDVEPIMHSI 4986
S WK K GK P + + +FT TRQRLD FTSEEQD LS +EP M SI
Sbjct: 1854 GSDSGDWKIK-KNHPGKFPRMNNDNTSVR-LFTETRQRLDLFTSEEQDALSLIEPTMKSI 1911
Query: 4987 RRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGKTGSGVDYITVNKHSCYQDSRCFY 5166
RRI+H++ DGDP+ P+DQS+I+DN+F+YHPDKA K GSG+D++ +++HS +QDSRC Y
Sbjct: 1912 RRIMHKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLMISRHSSFQDSRCLY 1971
Query: 5167 IVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYFRKPQTGANE 5304
+VSTDGR EDFSYRKCL N I++++P+ A F+ KYFRKP+ G N+
Sbjct: 1972 VVSTDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKPGGNQ 2017
>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
gi|482562261|gb|EOA26451.1| hypothetical protein
CARUB_v10022497mg [Capsella rubella]
Length = 1959
Score = 1602 bits (4148), Expect = 0.0
Identities = 873/1860 (46%), Positives = 1172/1860 (63%), Gaps = 113/1860 (6%)
Frame = +1
Query: 61 DGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPGQCDG 240
+G I I F+LA+ EIC +SIS+ I H++QL+NPFLGLPLE GKCE+CG EP +C+G
Sbjct: 11 EGEIVGITFALASHHEICIASISESSINHASQLSNPFLGLPLEFGKCESCGATEPDKCEG 70
Query: 241 HFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSERTSNSPCSNCLDIPQIS 420
HFGYI LP+PIYHP+H C + IS
Sbjct: 71 HFGYIQLPVPIYHPAHVIELKQMLSLLCLKCLKIKKAKSTSGGLAERLLGVCCEEASHIS 130
Query: 421 IKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVLEILKRFPE 600
I++ DG+ YLELK PS+SR + G WNFL++YGYRYG + R LL EV EIL+R PE
Sbjct: 131 IRD-RASDGASYLELKFPSRSRLQAGCWNFLERYGYRYGSDYTRPLLAREVKEILRRIPE 189
Query: 601 ETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKKVLKQVDII 780
ETRK+L+AKG+ PQ+GYIL+ LPVPPNCLSVPD+SDG S MS D S LK VLK+V I
Sbjct: 190 ETRKKLAAKGHIPQEGYILEYLPVPPNCLSVPDISDGLSSMSVDPSRIELKDVLKRVVAI 249
Query: 781 KNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADDSATRVWLE 960
K SRSG +FE+H EAND+ V YL +RG AKA M+ R+ +K +D S+++ W E
Sbjct: 250 KTSRSGETNFESHKAEANDMYRVVDTYLQVRGTAKAARTMDMRYRVSKISDSSSSKAWTE 309
Query: 961 KMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKAHLQDLVDK 1140
KMRTLFIRKGSGFSSRSV++GDAY+ V+E+G+P+EIAQRITFE++V+ N +LQ+LVDK
Sbjct: 310 KMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEDRVSVHNIRYLQELVDK 369
Query: 1141 KLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKHSLQAFSIY 1320
KLCL+Y G++TYSLR+GSKGHT L+ GQ+VHRR+MDGD+VFINR P+THKHSLQA +Y
Sbjct: 370 KLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVY 429
Query: 1321 VHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLSSHSANLNL 1500
VH D+TVKINPL+C P ADFDGDCV L+YPQSL+AKAE +ELFSV++QLLSSH+ L L
Sbjct: 430 VHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVDKQLLSSHTGQLIL 489
Query: 1501 QLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTALQILQCAL 1680
Q+ D+LLSL++M + F +KATAQQL M S L PA+ K S +G WT QILQ A
Sbjct: 490 QMGCDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAWTVFQILQLAF 549
Query: 1681 PSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVFNSLQPLLM 1860
P +L C GDRFM+ S++LR DF D++ S+ +EI++S+F +KG KEAL F+SLQPLLM
Sbjct: 550 PERLSCKGDRFMVDGSDLLRFDFGVDVMASIISEIVTSIFLEKGPKEALGFFDSLQPLLM 609
Query: 1861 ENIFLEGCSITLKDFIIPKSVMEDI-QMNVQGVSPLLNAMRSGYDELLEMQLDNQLKSVK 2037
E++F EG S++L+D + ++ M I + ++ SP+++ +R Y++ E+QL+N + VK
Sbjct: 610 ESLFAEGFSLSLEDLSMSRADMAVIHNLIIRETSPMVSRLRLSYED--ELQLENSIHKVK 667
Query: 2038 LPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDDMTSLFHR 2217
NF+LK ++ +LID KS S+I K+VQQ GF+G+QLSD+ KFY++TLV+DM R
Sbjct: 668 EVAANFMLKSYSMRNLIDMKSNSAINKLVQQTGFLGLQLSDKKKFYTKTLVEDMALFCKR 727
Query: 2218 KYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGTLFKNLMA 2397
KY G S FG++ C F+GLDPYE M HSI++REV+VRSSRGLAEPGTLFKNLMA
Sbjct: 728 KY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMA 784
Query: 2398 ILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAISNPAYKAV 2577
+LRD++I DGTVRN CSN ++QF+YG + L+ AGE VGVLAATA+SNPAYKAV
Sbjct: 785 VLRDIVITNDGTVRNTCSNSVVQFKYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKAV 844
Query: 2578 LDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAYIVWNRLK 2757
LDST +SN SWELMKEVLLC+VNF+N+ DRRVILYLN+C CGKR+C+ENAA V N+L
Sbjct: 845 LDSTANSNSSWELMKEVLLCKVNFQNNTNDRRVILYLNECRCGKRFCQENAACTVRNKLN 904
Query: 2758 RFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVLLKCQETI 2937
+ SLK AV FL+EY+KQ+T E L GHIH +K L+D N+SM ++ KC++ I
Sbjct: 905 KVSLKATAVEFLVEYRKQQTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVI 964
Query: 2938 SASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDALEKISLI 3117
++ +KKK K+ LSVS+CC F+ C S+ +PCL FS+ T+ D LE+ +
Sbjct: 965 NSLGQKKKKKATDDFKRTSLSVSDCCSFRDPCGSKDSDMPCLMFSYNATNPD-LERTLDV 1023
Query: 3118 MANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXXXXXXXXG 3297
+ N I PVLLETV+KGDPR+ +ANIIW S D++TW+RN +R+GE
Sbjct: 1024 LCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQ 1083
Query: 3298 SGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSVKMVAKGV 3477
SGDAWR+V+DSCL V HLIDTKRSIPY+IKQVQEL+G+SCAF+Q V+RLS SVKMV+KGV
Sbjct: 1084 SGDAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVKMVSKGV 1143
Query: 3478 LKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFERAAEKCHA 3657
LK+H++LLA++MTC+GN++GF GGYKAL RSL I PF EATL TPRKCFE+AAEKCH
Sbjct: 1144 LKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRKCFEKAAEKCHT 1203
Query: 3658 DSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSSNGRGLD 3837
DSLS++V SCSWGK V VGTG++FE+LWN+KE + DV++FL +VR +++
Sbjct: 1204 DSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVRSTTSSDAF- 1262
Query: 3838 TTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDD-----------EIQQNMETSRI 3984
+ G ++ + E+ E SPE + G+P F+D + + N E S
Sbjct: 1263 VSSPGFDVTEEEM----AEWAESPERDSALGEPKFEDSAEFQNLHDDGKQSESNWEKSSS 1318
Query: 3985 PYNENSDRSNWEINSFESGARERNGEQRWNSNSAGVVTPKTGSWAGW------------- 4125
N S S W ++ G E N E W ++ K +W+GW
Sbjct: 1319 WDNGCSGGSEWGVSKSTGG--ESNTESNWEKTTS---VEKEDAWSGWNTKKDAQESSKSD 1373
Query: 4126 ---------------SKPNQSTEPSG--------DAPSSDGWGSMGSQKELSNPWNNK-- 4230
+ PN T P+ + P+SD WG ++ PWN K
Sbjct: 1374 SGGAWGIKTKDDDANTTPNWETRPAQMDSIVPEINEPTSDVWGLKSVSEK---PWNKKNW 1430
Query: 4231 --VKEPKETKRTEDDGKAQWDHWNKPRDSDVKLLNEHEYQ-----SASGQMGAWLGWETN 4389
P T+ D + N +SD + + S +G +G W +
Sbjct: 1431 GTESAPAAWGSTDADAWGSSNKKNSETESDAAAWGSRDKRNSDIGSGAGVLGPWNKKSSE 1490
Query: 4390 TVPSSSQVSNISKS-LESPRWDDVDSHKNPTNA----WEKQGEEVKETGWNNKHEKTVSG 4554
T ++ + K+ ++ W D + ++ W QG ET + G
Sbjct: 1491 TESDAAAWGSSGKTKSDAATWSPWDKNNMEPDSEPAGWGSQGNMKSET--ETESNGASWG 1548
Query: 4555 QWKKSSIWSSSEGATNKLHPQVMQEESPLKESLVTNMMEERVSQKEKNWDSSVGK----- 4719
K+ +++ G+ +K + + E S E WD + +
Sbjct: 1549 SSGKTKSGAAAWGSCDKNNMETNSEPSAWGSQGKKKAETESGPASWGAWDKKISETESGL 1608
Query: 4720 -GW-------SENE----VQGQWGAHKEPAAESHAWDKEGSP-VKSRAWKTDVKLVKGKK 4860
GW SE E G WG AA+ + +G+P V + K+ K K K
Sbjct: 1609 AGWGNGDKINSETESGAAAWGSWGQPSPTAADKDTNEDDGNPWVSLKETKSGEKDEKEKS 1668
Query: 4861 ----------PTGSTHGWNASG-----------------------VFTATRQRLDQFTSE 4941
GS GW+ G +FTAT+QRLD FTSE
Sbjct: 1669 QWGNPAKKFPSDGSYGGWSNGGGAEWRGKRNHTPRPPRSEDNLAPMFTATKQRLDSFTSE 1728
Query: 4942 EQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSYHPDKAGKTGSGVDYI 5121
EQ++LSDVEP+M ++R+I+H + DG+P+ DD++++L+ I ++HP+K K GS VD+I
Sbjct: 1729 EQELLSDVEPVMRTLRKIMHMSGYPDGEPISDDDKTFVLEKILNFHPEKERKLGSAVDFI 1788
Query: 5122 TVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAMSFIGKYFRKPQTGAN 5301
TV+KH+ + D+RCF++VSTDG +DFSYRK L N++ KYP+ A FI KYF+KP+ N
Sbjct: 1789 TVDKHTTFTDTRCFFVVSTDGAKQDFSYRKSLNNYLMTKYPDRAEEFIDKYFKKPRPSGN 1848
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2020
Score = 1598 bits (4139), Expect = 0.0
Identities = 831/1630 (50%), Positives = 1096/1630 (67%), Gaps = 15/1630 (0%)
Frame = +1
Query: 49 TTTVDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPG 228
++ +DG + I+F +AT +EICT+SIS+ I+H++QL+NPFLGLPLE G+CE+CGT+E G
Sbjct: 7 SSVLDGTVVGIKFGMATRQEICTASISESSISHASQLSNPFLGLPLEFGRCESCGTSEVG 66
Query: 229 QCDGHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSE----RTSNSPCSN 396
+C+GHFGY+ LP+PIYHPSH S + SPC
Sbjct: 67 KCEGHFGYVELPVPIYHPSHISELKRMLSVVCLNCLKMRKTKFPASSSGLAQRLISPCCQ 126
Query: 397 CLDIPQISIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVL 576
++ +SI+E T DG+ YL LK SKS+ DGFW+FL+KYGYRY ++ R LLPCE +
Sbjct: 127 DVNAALVSIREVKTSDGACYLALKV-SKSKIHDGFWSFLEKYGYRYEGDETRALLPCEAM 185
Query: 577 EILKRFPEETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKK 756
EI+KR P ET+K+L+ KG+FPQDGY+L+ LPVPPNCLSVP+VSDG S+MSSD S+++L+K
Sbjct: 186 EIIKRIPIETKKKLAGKGFFPQDGYVLKYLPVPPNCLSVPEVSDGASVMSSDPSMTILRK 245
Query: 757 VLKQVDIIKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADD 936
+L++V+IIK+SRSG P+FE+H +EANDLQ V +Y +RG +K ++ T FG NKE
Sbjct: 246 LLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVNKELTA 305
Query: 937 SATRVWLEKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKA 1116
S+T+ WLEKMRTLFIRKGSGFSSR+V++GD Y+R++E+G+P+E+AQRITFEE+V N
Sbjct: 306 SSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQRITFEERVNIHNIR 365
Query: 1117 HLQDLVDKKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKH 1296
+LQ LVD+ LCLTYK+G STYSLREGSKGH +L+ GQ+VHRRIMDGDIVFINR P+THKH
Sbjct: 366 YLQKLVDEHLCLTYKEGVSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINRPPTTHKH 425
Query: 1297 SLQAFSIYVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLS 1476
SLQA +Y+H DHTVKINPLICGP GADFDGDCV L+YPQSLAAKAE +ELF+VE QLLS
Sbjct: 426 SLQALYVYIHEDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFAVENQLLS 485
Query: 1477 SHSANLNLQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTA 1656
SHS NLNLQL D+LL+LK++ K F +A A QL M + L PA+LK SS + WT+
Sbjct: 486 SHSGNLNLQLSTDSLLALKMLVKRCFLGRAAANQLAMFLLLPLPRPALLKASSDDACWTS 545
Query: 1657 LQILQCALPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVF 1836
+QILQ ALP DC+G R++I QSEIL DF+RD L + NEI +S+F+ KG EAL F
Sbjct: 546 IQILQGALPMGFDCTGGRYLIRQSEILEFDFSRDALPATINEIAASIFFGKGPMEALKFF 605
Query: 1837 NSLQPLLMENIFLEGCSITLKDFIIPKSVMEDIQMNVQGVSPLLNAMRSGYDELLEMQLD 2016
+ LQP LME++F EG S++L++F I +++ I+ ++ S LL +RS Y+EL+ QL+
Sbjct: 606 DVLQPFLMESLFAEGFSVSLEEFSISRAIKRIIRRSIGKASSLLYQLRSLYNELVAQQLE 665
Query: 2017 NQLKSVKLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDD 2196
++ V+LP++NF LK + L DLID+KS+S+I KVVQQVGF+G QL DRG+FYS+ LVDD
Sbjct: 666 KHIQDVELPIINFALKSTKLGDLIDSKSKSTIDKVVQQVGFLGQQLFDRGRFYSKGLVDD 725
Query: 2197 MTSLFHRKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGT 2376
+ S FH K +G PS +GL+ C FNGLDPYE MVHSIS+RE++VRSSRGL+EPGT
Sbjct: 726 VASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGT 785
Query: 2377 LFKNLMAILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAIS 2556
LFKNLMAILRDV+ICYDGTVRN+CSN +IQFEYG +A L+PAGE VGVLAATA+S
Sbjct: 786 LFKNLMAILRDVVICYDGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGEPVGVLAATAMS 845
Query: 2557 NPAYKAVLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAY 2736
NPAYKAVLD++P+SN SWELMKE+LLC+VNF+N+ DRRVILYLNDC CG C+ENAAY
Sbjct: 846 NPAYKAVLDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCRENAAY 905
Query: 2737 IVWNRLKRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVL 2916
V N+L++ SLK+ AV F+IEYQ+Q+T E+S LVGHI+ D+ LE+L +SM V
Sbjct: 906 SVKNQLRKVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEELKISMANVF 965
Query: 2917 LKCQETISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDA 3096
KC E + + +KKK + +LK I LS F +SC S PCL F WL
Sbjct: 966 EKCLERLKSFSRKKK--VNQYLKNIELS------FSESCSSSHPAAPCLTF-WLKNHDSD 1016
Query: 3097 LEKISLIMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXX 3276
L+ +++ ICPVL ET++KGDPR+ +A+IIWVSPD +TWVRNP ++ GE
Sbjct: 1017 LDNAVKVLSENICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIVL 1076
Query: 3277 XXXXXXGSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSV 3456
SGDAWRIV+DSCLPV HLIDT+RSIPYAIKQ+QEL+GISC FDQ ++R++ SV
Sbjct: 1077 EEEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASV 1136
Query: 3457 KMVAKGVLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFER 3636
KMVAKGVL++HL+LLASSMTC GN++GF GGYKAL R L I VPF +ATLFTP+KCFER
Sbjct: 1137 KMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFER 1196
Query: 3637 AAEKCHADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMS 3816
AAEKCH DSLSSIVASCSWGKHVAVGTG++F+I+W+ EI+SN+ DV++FLH+V+
Sbjct: 1197 AAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKSV 1256
Query: 3817 SNGRGLDTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNE 3996
+NG CLG +IDDL L+ E ++ +SP+HN + + F+++ N TS
Sbjct: 1257 TNGEEETDACLGEDIDDL-LEEEYMDLGMSPQHNSGF-EAVFEENPEVLNGSTS------ 1308
Query: 3997 NSDRSNWEINSFESGARERNGEQRWNSNSAGVVTPKTGSWAGWSKPNQSTEPSGDAPSSD 4176
+ W+++S ++ + KT W+GW+ N+ + + +
Sbjct: 1309 ----NGWDVSSNQTQS-------------------KTNEWSGWASSNK--DGRSETAQEN 1343
Query: 4177 GWGSMGSQKE--LSNPWNNKVKEPKETKRTEDDGKA---QWDHWNKPRDSDVKLLNEHEY 4341
WG +Q++ SN WN T T D K +W W + S++
Sbjct: 1344 SWGKTVNQEDSSKSNAWN--------TSTTADQTKTKSNEWSDWGSNK-SEIPAGGSKAV 1394
Query: 4342 QSASGQMGAWLGWETNTVPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQGEEVKETG 4521
Q S + AW NT +S+Q +KS E W S + Q + K
Sbjct: 1395 QEDSSKSNAW-----NTSTTSNQTK--TKSKEWSAWGSNKSEIPACGSKAVQEDSSKSNT 1447
Query: 4522 WNNK----HEKTVSGQWKKSSIWSSSEGATNKLHPQVMQEESPLKESLVTNMMEERVSQK 4689
WN KT S +W S W S++ + +QE+S + + ++ K
Sbjct: 1448 WNTSTTADQTKTKSNEW---SAWGSNKSEIPAGGSKAVQEDSSKSNAWNRSTTADQTKTK 1504
Query: 4690 EKNWDSSVGKGWSENEVQGQWGAHKE--PAAESHAWDKEGSPVKSRAWKTDVKLVKGKKP 4863
W + WG++K PA S A ++ S KS AW T + K
Sbjct: 1505 SNEWSA--------------WGSNKSEIPAGGSKAVQEDSS--KSNAWNTSTTADQTKTK 1548
Query: 4864 TGSTHGWNAS 4893
+ W ++
Sbjct: 1549 SNEWSAWGSN 1558
Score = 217 bits (553), Expect = 4e-53
Identities = 147/500 (29%), Positives = 227/500 (45%), Gaps = 41/500 (8%)
Frame = +1
Query: 3928 GKPTFDDDEIQQNMETSRIPYNENSDRSN----WEINSFE-----SGARERNGEQRWN-S 4077
G +D + N + ++ +SN W N E S A + + + WN S
Sbjct: 1522 GSKAVQEDSSKSNAWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKAWNTS 1581
Query: 4078 NSAGVVTPKTGSWAGWSKPNQSTEPSGD--APSSDGWGSMGSQKELSNPWNNKVKEPKET 4251
+A K+ W+ N+S P+G A D WGS + +++ N+++ +
Sbjct: 1582 TTADQTKTKSNEWSA-RVSNKSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGA-WDA 1639
Query: 4252 KRTEDDGKAQWDHWNKPRDSDVKLLNEHEY-------------QSASGQMGA-------- 4368
+ +W W K +D + +H + S SG GA
Sbjct: 1640 NAADQTKSNEWSGWGKKKDVTQEDNVQHSWGSGKRKDKVTQEDNSGSGDWGANRTDLAIT 1699
Query: 4369 ----WLGWETNT--VPSSSQVSNISKSLESPRWDDVDSHKNPTNAWEKQGEEVKETGWNN 4530
W W N +P+ + + S + +D + AW GE N
Sbjct: 1700 KSSEWSSWGKNKTEIPAGGSANVQNDSWGLGKLNDTQKDNSGCGAW---GENSGSAWVRN 1756
Query: 4531 KHEKTVSGQWK-KSSIWSSSEG-ATNKLHPQVMQEESPLKESLVTNMMEERVSQKEKNWD 4704
K E G K + W+S A +K+ + + + + + + W+
Sbjct: 1757 KAETIDGGSEKPQEDAWNSGNWKAESKVGNTTWGKPKSSESHAWDSHNQSNQNSSSQGWE 1816
Query: 4705 SSVGKGWSENEVQGQWGAHKEPAAESHAWDKEGSPVKSRAWKTDVKLVKGKKPTGSTHGW 4884
S + SENE QWG ++ ++ +G + WK + + P
Sbjct: 1817 SHIASANSENEKGFQWGKGRDSFKKNRFEGSQGRGSNAGDWKN-----RNRPPR------ 1865
Query: 4885 NASGVFTATRQRLDQFTSEEQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDN 5064
A QRLD ++SEEQD+L D+EPIM SIRRI+ Q DGDPL +DQ ++L+N
Sbjct: 1866 -------APGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQQQGYSDGDPLAAEDQLFVLEN 1918
Query: 5065 IFSYHPDKAGKTGSGVDYITVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYP 5244
+F +HPDK K G+G+DY+ VNKHS +Q+SRCFY+V DG+S+DFSYRKCL N+I KYP
Sbjct: 1919 VFEHHPDKETKMGAGIDYVMVNKHSSFQESRCFYVVCKDGQSKDFSYRKCLANYISKKYP 1978
Query: 5245 ESAMSFIGKYFRKPQTGANE 5304
+ A SF+GKYFRKP+ ++
Sbjct: 1979 DLAESFLGKYFRKPRARGDQ 1998
>ref|XP_006411250.1| hypothetical protein EUTSA_v10016128mg [Eutrema salsugineum]
gi|557112419|gb|ESQ52703.1| hypothetical protein
EUTSA_v10016128mg [Eutrema salsugineum]
Length = 1874
Score = 1597 bits (4134), Expect = 0.0
Identities = 862/1827 (47%), Positives = 1156/1827 (63%), Gaps = 85/1827 (4%)
Frame = +1
Query: 58 VDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPGQCD 237
++G I I+F+LAT EICT+SISD I HS+QL+N FLGLPLE G+CE+CG EP +C+
Sbjct: 10 LEGEIVGIRFALATPHEICTASISDSAINHSSQLSNSFLGLPLEFGRCESCGATEPDKCE 69
Query: 238 GHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSERTSNSPCSNCLDIPQI 417
GHFGYI LP+PIYHP+H C + I
Sbjct: 70 GHFGYIELPVPIYHPAHVSELKQMLSLLCLKCLNIKKAKSTSGGLAERLLGVCCEEASNI 129
Query: 418 SIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVLEILKRFP 597
SI+E DG+ YLELK PS+SR ++G WNFL++YGYRYG + R LL EV EI++R P
Sbjct: 130 SIRE-KASDGASYLELKFPSRSRLQEGCWNFLERYGYRYGSDYTRPLLAREVKEIIRRMP 188
Query: 598 EETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKKVLKQVDI 777
EETRK+L+AKG+ PQ+GYIL+ LPVPPNCLSVPDVSDG S MS D S LK VLK+V
Sbjct: 189 EETRKKLTAKGHIPQEGYILEYLPVPPNCLSVPDVSDGFSSMSVDPSRIELKDVLKKVVA 248
Query: 778 IKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADDSATRVWL 957
IKNSRSG +FE+H IEAND+ V YL +RG AK N++ R+G +K +D S+++ W
Sbjct: 249 IKNSRSGETNFESHKIEANDMFRVVDTYLRVRGTAKPTRNIDVRYGVSKISDSSSSKAWT 308
Query: 958 EKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKAHLQDLVD 1137
EKMRTLFIRKGSGFSSRSV++GDAY+ V+E+G+P+EIAQRITFEE+V+ N HLQDLVD
Sbjct: 309 EKMRTLFIRKGSGFSSRSVITGDAYRNVNEVGIPVEIAQRITFEERVSVHNVGHLQDLVD 368
Query: 1138 KKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKHSLQAFSI 1317
K+CL+Y G++TYSLR+GSKGHT L+ GQ+VHRR+MDGD+VFINR P+THKHSLQA +
Sbjct: 369 NKMCLSYTQGSTTYSLRDGSKGHTVLKPGQIVHRRVMDGDVVFINRPPTTHKHSLQALRV 428
Query: 1318 YVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLSSHSANLN 1497
YVH D+TVKINPL+CGP ADFDGDCV L+YPQSL AKAE +ELFSV++QL SSH+ L
Sbjct: 429 YVHEDNTVKINPLMCGPLSADFDGDCVHLFYPQSLTAKAEVMELFSVDKQLRSSHTGQLI 488
Query: 1498 LQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTALQILQCA 1677
LQL D+LLSL++M + + +KATAQQL M S L PAV K +G WT QILQ A
Sbjct: 489 LQLGCDSLLSLRVMLEEMYLDKATAQQLAMYGSLSLSPPAVRKSYESGPAWTVFQILQLA 548
Query: 1678 LPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVFNSLQPLL 1857
P +L GDRF++ +S++L DF D + S+ N I++++ +KG KEAL F+SLQPLL
Sbjct: 549 FPERLSSKGDRFIVSESDLLCFDFGVDAMPSIINGIVTAIMLEKGPKEALGFFDSLQPLL 608
Query: 1858 MENIFLEGCSITLKDFIIPKSVMEDI-QMNVQGVSPLLNAMRSGYDELLEMQLDNQLKSV 2034
ME + +G S++L+D + + M I + + +SP+++ +R Y++ E+QL+N + V
Sbjct: 609 MEFLSAQGFSVSLEDLSMSREDMNVIHNLITREISPMVSRLRLSYED--ELQLENSIHKV 666
Query: 2035 KLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDDMTSLFH 2214
K NF+LK ++ +LID KS S+I K+VQQ+GF+G+QLSD+ KFY++TLV+DM
Sbjct: 667 KEVAANFMLKSYSMRNLIDIKSNSAINKLVQQIGFLGLQLSDKKKFYTKTLVEDMAQFCK 726
Query: 2215 RKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGTLFKNLM 2394
RKY G S FG++ C F+GLD YE M HSI++REV+VRSSRGLAEPGTLFKNLM
Sbjct: 727 RKY---GRISSSGDFGIVKGCFFHGLDAYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLM 783
Query: 2395 AILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAISNPAYKA 2574
A+LRD++I DGTVRN CSN ++QF Y + L+ AGE VGVLAATA+SNPAYKA
Sbjct: 784 AVLRDIVITNDGTVRNTCSNSIVQFSYEGNSDRGHQGLFEAGEPVGVLAATAMSNPAYKA 843
Query: 2575 VLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAYIVWNRL 2754
VLDSTPSSN SWELMKEVLLC+VNF+N DRRVILYLN+C CGK+YC+ENAAY V N+L
Sbjct: 844 VLDSTPSSNSSWELMKEVLLCKVNFQNSANDRRVILYLNECRCGKKYCQENAAYTVRNKL 903
Query: 2755 KRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVLLKCQET 2934
K+ SLK+ AV FL+EY+KQ+ E L GHIH +K L++ N+SM ++L KC++
Sbjct: 904 KKVSLKETAVEFLVEYRKQQAISEIFGNDSSLRGHIHLNKTLLQEWNISMQDILQKCEDA 963
Query: 2935 ISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDALEKISL 3114
I++ +KKK F K+ LS SECC F+ C S+ +PCL FS + + LE+
Sbjct: 964 INSLVQKKKKKADDF-KRTNLSFSECCSFRDPCASKDSDMPCLMFSSYNATDPDLERTLD 1022
Query: 3115 IMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXXXXXXXX 3294
++ + I PVLLETV+KGDPR+ +ANI W SP+ +TW+ N +R+GE
Sbjct: 1023 VLCHTIYPVLLETVIKGDPRIFSANITWNSPETTTWIWNRHASRRGEWVLDVTVEKSAVK 1082
Query: 3295 GSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSVKMVAKG 3474
SGDAWR+VMDSCL V HLIDT RSIPY+IKQVQEL+G+SCAF+Q V+RLS SV+MV+KG
Sbjct: 1083 QSGDAWRVVMDSCLSVLHLIDTTRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRMVSKG 1142
Query: 3475 VLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFERAAEKCH 3654
VLK+H++L+A++MTC+GN++GF GGYKAL RSL I PF EATL TPRKCFE+AAEKCH
Sbjct: 1143 VLKEHIILVANNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRKCFEKAAEKCH 1202
Query: 3655 ADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSSNGRGL 3834
DSLS++V SCSWGK V VGTG++FE+LWNKKE + DV++FL +VR ++N
Sbjct: 1203 TDSLSTVVGSCSWGKRVDVGTGSKFELLWNKKETGLENENETDVYSFLQMVRSTTNADAY 1262
Query: 3835 DTTCLGGEIDDLELDNEDQ-EINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNENSDR- 4008
++ ++ ED E SPE + G+ F+D QN+ P D
Sbjct: 1263 ASS------PGFDVTEEDMAEWAESPERDSALGELKFEDSAEFQNIHDEGKPSESKWDNG 1316
Query: 4009 ----SNWEINSFESG-------------ARERNGEQRWNSNSAGVVTPKTGSWAGW-SKP 4134
S W+++ G + + WNS + ++ SW W SKP
Sbjct: 1317 FSGGSEWDLSRNTGGEENPQSGWEKTTNVEKEDASSGWNSKKDAQESSRSDSWRAWGSKP 1376
Query: 4135 ---NQSTEPS--------------GDAPSSDGWGSMGSQKELSNPWNNK--------VKE 4239
+ +T PS + PS D WG +++ N+K V
Sbjct: 1377 KDNDANTTPSWETRPAQKDSMVIENNEPSVDVWGPKSVSEKVWKKKNSKTESAPAAWVSR 1436
Query: 4240 PKETKRTEDDGKAQW---DHWNKPRDSDVKLLNEHEYQSASGQMGAWLGW-ETNTVPSSS 4407
K+ TE D A W D NK ++D + + AW W E + S
Sbjct: 1437 DKKNSETELDASA-WGFGDKVNKETETDAAAWGAGYKMNKETESAAWGSWGEKRSETESG 1495
Query: 4408 QV-----SNISKSLES---------PRWDDVDSHKNPTNAWEKQGEEVKE--TGWNNKHE 4539
+N + +ES + D S W+K+ E + W +
Sbjct: 1496 DAGWGFRNNTNSKVESGAGAWGPQPTKSSDTGSGTPTWGTWDKKNSETESGPAAWGSPDN 1555
Query: 4540 KTVSGQ-----WKKSSIWSSSEGATNKLHPQVMQEESPLKESLVTNMMEERVSQKEKNWD 4704
K G+ W +S G+ + + + E P + + + + +K+ +
Sbjct: 1556 KNSEGELGATNWGFKERKNSDTGSGSAVWGKKNSETDP-SPAAWDSWGQPSATSSDKDTN 1614
Query: 4705 SSVGKGW-----------SENEVQGQWG--AHKEPAAESH-AWDKEGSPVKSRAWKTDVK 4842
G W E E + QWG + P+++SH +W G D K
Sbjct: 1615 GDDGNPWVSLKATNSGEKDETETR-QWGIPTKRYPSSDSHGSWSNGGG--------ADGK 1665
Query: 4843 LVKGKKPTGSTHGWNASGVFTATRQRLDQFTSEEQDILSDVEPIMHSIRRILHQTRDKDG 5022
K + P + +FTAT QRLD FTSEEQ++LSDVEP+ +R ILH++ DG
Sbjct: 1666 --KNRPPRTPGSEMKLAPMFTATGQRLDMFTSEEQELLSDVEPVTRKLRNILHRSGYPDG 1723
Query: 5023 DPLPPDDQSYILDNIFSYHPDKAGKTGSGVDYITVNKHSCYQDSRCFYIVSTDGRSEDFS 5202
+P+ D+SY+L+++ ++HPDK K GSGVD+ITV+KH+ + +SRCF++VSTDG +DFS
Sbjct: 1724 EPISDADKSYVLEHVLNFHPDKDSKLGSGVDFITVDKHTTFTESRCFFVVSTDGAKQDFS 1783
Query: 5203 YRKCLENFIRNKYPESAMSFIGKYFRK 5283
YRKC+ N++ K+P A FIGKY+++
Sbjct: 1784 YRKCIINYVMEKFPNLAEEFIGKYYKR 1810
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 1593 bits (4126), Expect = 0.0
Identities = 875/1875 (46%), Positives = 1175/1875 (62%), Gaps = 127/1875 (6%)
Frame = +1
Query: 58 VDGRITSIQFSLATDREICTSSISDFPITHSTQLTNPFLGLPLESGKCEACGTAEPGQCD 237
+DG I I F+LA+ EIC SIS+ I H +QLTN FLGLPLE GKCE+CG EP +C+
Sbjct: 10 LDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCGATEPDKCE 69
Query: 238 GHFGYIGLPIPIYHPSHXXXXXXXXXXXXXXXXXXXXXXXDVSERTSNSPCSNCLDIPQI 417
GHFGYI LP+PIYHP+H C + QI
Sbjct: 70 GHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKGTSGGLADRLLGVCCEEASQI 129
Query: 418 SIKECTTKDGSQYLELKTPSKSRFRDGFWNFLDKYGYRYGDEKCRQLLPCEVLEILKRFP 597
SIK+ DG+ YLELK PS+SR + G WNFL++YGYRYG + R LL EV EIL+R P
Sbjct: 130 SIKD-RASDGASYLELKLPSRSRLQPGCWNFLERYGYRYGSDYTRPLLAREVKEILRRIP 188
Query: 598 EETRKRLSAKGYFPQDGYILQKLPVPPNCLSVPDVSDGKSIMSSDLSVSMLKKVLKQVDI 777
EE+RK+L+AKG+ PQ+GYIL+ LPVPPNCLSVP+ SDG S MS D S LK VLK+V
Sbjct: 189 EESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRIELKDVLKKVIA 248
Query: 778 IKNSRSGPPSFEAHIIEANDLQLAVAEYLNLRGVAKAPHNMNTRFGANKEADDSATRVWL 957
IK+SRSG +FE+H EA+++ V YL +RG AKA N++ R+G +K +D S+++ W
Sbjct: 249 IKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKAARNIDMRYGVSKISDSSSSKAWT 308
Query: 958 EKMRTLFIRKGSGFSSRSVLSGDAYQRVDEIGLPLEIAQRITFEEKVTERNKAHLQDLVD 1137
EKMRTLFIRKGSGFSSRSV++GDAY+ V+E+G+P+EIAQRITFEE+V+ N+ +LQ LVD
Sbjct: 309 EKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVD 368
Query: 1138 KKLCLTYKDGASTYSLREGSKGHTFLRVGQLVHRRIMDGDIVFINRTPSTHKHSLQAFSI 1317
KLCL+Y G++TYSLR+GSKGHT L+ GQ+VHRR+MDGD+VFINR P+THKHSLQA +
Sbjct: 369 DKLCLSYTQGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRV 428
Query: 1318 YVHSDHTVKINPLICGPFGADFDGDCVQLYYPQSLAAKAEALELFSVEQQLLSSHSANLN 1497
YVH D+TVKINPL+C P ADFDGDCV L+YPQSL+AKAE +ELFSVE+QLLSSH+ L
Sbjct: 429 YVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLI 488
Query: 1498 LQLVNDALLSLKIMFKIFFFNKATAQQLVMSVSSRLQGPAVLKVSSTGSRWTALQILQCA 1677
LQ+ +D+LLSL++M + F +KATAQQL M S L PA+ K S +G WT QILQ A
Sbjct: 489 LQMGSDSLLSLRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAWTVFQILQLA 548
Query: 1678 LPSQLDCSGDRFMICQSEILRLDFNRDLLQSLWNEIISSVFYKKGSKEALNVFNSLQPLL 1857
P +L C GDRF++ S++L+ DF D + S+ NEI++S+F +KG KE L F+SLQPLL
Sbjct: 549 FPERLSCKGDRFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLL 608
Query: 1858 MENIFLEGCSITLKDFIIPKSVMEDI-QMNVQGVSPLLNAMRSGYDELLEMQLDNQLKSV 2034
ME++F EG S++L+D + ++ M+ I + ++ +SP+++ +R Y + E+QL+N + V
Sbjct: 609 MESLFAEGFSLSLEDLSMSRADMDVIHNLIIREISPMVSRLRLSYRD--ELQLENSIHKV 666
Query: 2035 KLPVVNFILKLSALADLIDAKSESSIGKVVQQVGFMGIQLSDRGKFYSRTLVDDMTSLFH 2214
K NF+LK ++ +LID KS S+I K+VQQ GF+G+QLSD+ KFY++TLV+DM
Sbjct: 667 KEVAANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCK 726
Query: 2215 RKYAVNGVDPPSEAFGLITSCLFNGLDPYEAMVHSISSREVLVRSSRGLAEPGTLFKNLM 2394
RKY G S FG++ C F+GLDPYE M HSI++REV+VRSSRGLAEPGTLFKNLM
Sbjct: 727 RKY---GRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLM 783
Query: 2395 AILRDVIICYDGTVRNVCSNFLIQFEYGAKAATSANCLYPAGEAVGVLAATAISNPAYKA 2574
A+LRD++I DGTVRN CSN +IQF+YG + L+ AGE VGVLAATA+SNPAYKA
Sbjct: 784 AVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKA 843
Query: 2575 VLDSTPSSNLSWELMKEVLLCRVNFKNDITDRRVILYLNDCGCGKRYCKENAAYIVWNRL 2754
VLDS+P+SN SWELMKEVLLC+VNF+N DRRVILYLN+C CGKR+C+ENAA V N+L
Sbjct: 844 VLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAACTVRNKL 903
Query: 2755 KRFSLKDIAVAFLIEYQKQKTSPESSLGRGPLVGHIHFDKKRLEDLNLSMHEVLLKCQET 2934
+ SLKD AV FL+EY+KQ T E L GHIH +K L+D N+SM ++ KC++
Sbjct: 904 NKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDV 963
Query: 2935 ISASRKKKKDPLGHFLKKIFLSVSECCCFQQSCDSELFPVPCLQFSWLDTSGDALEKISL 3114
I++ +KKK K+ LSVSECC F+ C S+ +PCL FS+ T D LE+
Sbjct: 964 INSLGQKKKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYNATDPD-LERTLD 1022
Query: 3115 IMANIICPVLLETVVKGDPRVDTANIIWVSPDISTWVRNPGRTRKGESXXXXXXXXXXXX 3294
++ N + PVLLE V+KGD R+ +ANIIW S D++TW+RN +R+GE
Sbjct: 1023 VLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVK 1082
Query: 3295 GSGDAWRIVMDSCLPVFHLIDTKRSIPYAIKQVQELVGISCAFDQVVERLSRSVKMVAKG 3474
SGDAWR+V+DSCL V HLIDTKRSIPY++KQVQEL+G+SCAF+Q V+RLS SV+MV+KG
Sbjct: 1083 QSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKG 1142
Query: 3475 VLKDHLMLLASSMTCTGNVIGFYVGGYKALFRSLKIHVPFAEATLFTPRKCFERAAEKCH 3654
VLK+H++LLA++MTC+G ++GF GGYKAL RSL I PF EATL PRKCFE+AAEKCH
Sbjct: 1143 VLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCH 1202
Query: 3655 ADSLSSIVASCSWGKHVAVGTGTRFEILWNKKEIESNQDGVKDVFNFLHLVRMSSNGRGL 3834
DSLS++V SCSWGK V VGTG++FE+LWN+KE + DV++FL +V ++N
Sbjct: 1203 TDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVISTTNADAF 1262
Query: 3835 DTTCLGGEIDDLELDNEDQEINLSPEHNDDYGKPTFDDDEIQQNMETSRIPYNENSDRSN 4014
+ G ++ + E+ E SPE + G+P F+D QN+ P N ++S
Sbjct: 1263 -VSSPGFDVTEEEM----AEWAESPERDSALGEPKFEDSADFQNLHDEGKPSGANWEKS- 1316
Query: 4015 WEINSFESGARERNGEQRWNSNSAGVVTPKTGSWAGWSKPNQSTEPSGDAPSSDGWGSMG 4194
+S+++G +G W V+ TG G + P + E + + D W S
Sbjct: 1317 ---SSWDNGC---SGGSEWG------VSKSTG---GEANPESNWEKTTNVEKEDAWSSWN 1361
Query: 4195 SQKEL--SNPWNNKVKEPKETKRTEDDGKAQWDHWNKPRDSDVKLLNEHE-----YQSAS 4353
++K+ S+ ++ +TK + D W+ P+DS V NE ++S S
Sbjct: 1362 TRKDAQESSKSDSGGAWGIKTKDADADTTPNWETSPAPKDSIVPENNEPTSDVWGHKSVS 1421
Query: 4354 GQMGAWLGWETNTVPS-----------SSQVSNISKSLESPRW-------DDVDSHKNPT 4479
+ W T + P+ SS N ++ W DV S
Sbjct: 1422 DKSWDKKNWGTESAPAAWGSTDAAVWGSSDKKNSETESDAAAWGSRDKNNSDVGSGAGVL 1481
Query: 4480 NAWEKQGEEVKETG--WNNKHEKTVSG-----QWKKSSIWSSSE---------------- 4590
W K+ E + G W + +KT SG W K +I + SE
Sbjct: 1482 GPWNKKSSETESNGATWGSS-DKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETES 1540
Query: 4591 -----GATNKLHPQV------------MQEESPLKESLVTNMMEERVSQKE--KNWDSSV 4713
GA +K + E+ L + + N +++ K W S+
Sbjct: 1541 GPAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTD 1600
Query: 4714 GKGWSENEVQGQ--------WGAHKEPAAE----SHAWDKEGSP---------------- 4809
W ++ WG+ + +E + AW G P
Sbjct: 1601 AAAWGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNP 1660
Query: 4810 -VKSRAWKTDVKLVKGKKPTG-------STHGWNASG----------------------- 4896
V + K+ K K + G S+ GW+ G
Sbjct: 1661 WVSLKETKSREKDDKERSQWGNPAKKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDNLAP 1720
Query: 4897 VFTATRQRLDQFTSEEQDILSDVEPIMHSIRRILHQTRDKDGDPLPPDDQSYILDNIFSY 5076
+FTATRQRLD FTSEEQ++LSDVEP+M ++R+I+H + DGDP+ DD++++L+ I ++
Sbjct: 1721 MFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNF 1780
Query: 5077 HPDKAGKTGSGVDYITVNKHSCYQDSRCFYIVSTDGRSEDFSYRKCLENFIRNKYPESAM 5256
HP K K GSGVD+ITV+KH+ + DSRCF++VSTDG +DFSYRK L N++ KYP+ A
Sbjct: 1781 HPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAE 1840
Query: 5257 SFIGKYFRKPQTGAN 5301
FI KYF KP+ N
Sbjct: 1841 EFIDKYFTKPRPSGN 1855