BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00001246
         (234 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK56834.1| RPS3 [Cymbidium hybrid cultivar]                       146   3e-33
ref|XP_006382773.1| 40S ribosomal protein S3A [Populus trichocar...   143   3e-32
ref|XP_006382772.1| hypothetical protein POPTR_0005s05280g [Popu...   143   3e-32
gb|ABK93399.1| unknown [Populus trichocarpa]                          143   3e-32
ref|XP_004958212.1| PREDICTED: 40S ribosomal protein S3a-like [S...   142   4e-32
ref|XP_003558569.1| PREDICTED: 40S ribosomal protein S3a-like [B...   142   4e-32
ref|NP_001241430.1| uncharacterized protein LOC100813273 [Glycin...   142   4e-32
gb|AFS65104.1| 40S ribosomal protein S3a-like protein [Elaeis gu...   142   5e-32
ref|XP_006838990.1| hypothetical protein AMTR_s00002p00271660 [A...   142   6e-32
ref|NP_001049289.1| Os03g0200500 [Oryza sativa Japonica Group] g...   142   6e-32
ref|XP_003559021.1| PREDICTED: 40S ribosomal protein S3a-like [B...   142   6e-32
gb|EEE53089.1| hypothetical protein OsJ_35850 [Oryza sativa Japo...   142   6e-32
gb|EEC69140.1| hypothetical protein OsI_38068 [Oryza sativa Indi...   142   6e-32
ref|NP_001066631.1| Os12g0406200 [Oryza sativa Japonica Group] g...   142   6e-32
ref|NP_001276152.1| 40S ribosomal protein S3a-like [Glycine max]...   141   8e-32
ref|XP_007143300.1| hypothetical protein PHAVU_007G060700g [Phas...   141   1e-31
ref|XP_004985319.1| PREDICTED: 40S ribosomal protein S3a-like is...   141   1e-31
ref|XP_006663974.1| PREDICTED: 40S ribosomal protein S3a-like [O...   140   1e-31
ref|XP_006663973.1| PREDICTED: 40S ribosomal protein S3a-like [O...   140   1e-31
ref|XP_006663971.1| PREDICTED: 40S ribosomal protein S3a-like [O...   140   1e-31

>gb|ABK56834.1| RPS3 [Cymbidium hybrid cultivar]
          Length = 261

 Score =  146 bits (369), Expect = 3e-33
 Identities = 75/77 (97%), Positives = 76/77 (98%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKM EIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV
Sbjct: 156 AQTSQIRQIRRKMREIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_006382773.1| 40S ribosomal protein S3A [Populus trichocarpa]
           gi|550338141|gb|ERP60570.1| 40S ribosomal protein S3A
           [Populus trichocarpa]
          Length = 261

 Score =  143 bits (360), Expect = 3e-32
 Identities = 73/77 (94%), Positives = 74/77 (96%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQSSQIRQIRRKM EIM NQASSCDLK+LVQKFIPEVIGKEIEKATT IYPLQNVFIRKV
Sbjct: 156 AQSSQIRQIRRKMREIMVNQASSCDLKDLVQKFIPEVIGKEIEKATTGIYPLQNVFIRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_006382772.1| hypothetical protein POPTR_0005s05280g [Populus trichocarpa]
           gi|550338140|gb|ERP60569.1| hypothetical protein
           POPTR_0005s05280g [Populus trichocarpa]
          Length = 265

 Score =  143 bits (360), Expect = 3e-32
 Identities = 73/77 (94%), Positives = 74/77 (96%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQSSQIRQIRRKM EIM NQASSCDLK+LVQKFIPEVIGKEIEKATT IYPLQNVFIRKV
Sbjct: 160 AQSSQIRQIRRKMREIMVNQASSCDLKDLVQKFIPEVIGKEIEKATTGIYPLQNVFIRKV 219

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 220 KILKAPKFDLGKLMEVH 236


>gb|ABK93399.1| unknown [Populus trichocarpa]
          Length = 261

 Score =  143 bits (360), Expect = 3e-32
 Identities = 73/77 (94%), Positives = 74/77 (96%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQSSQIRQIRRKM EIM NQASSCDLK+LVQKFIPEVIGKEIEKATT IYPLQNVFIRKV
Sbjct: 156 AQSSQIRQIRRKMREIMVNQASSCDLKDLVQKFIPEVIGKEIEKATTGIYPLQNVFIRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_004958212.1| PREDICTED: 40S ribosomal protein S3a-like [Setaria italica]
          Length = 262

 Score =  142 bits (359), Expect = 4e-32
 Identities = 71/77 (92%), Positives = 76/77 (98%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKMVEIMTNQAS+CDLKELV KFIPEVIGKE+EKAT+SI+PLQNVFIRKV
Sbjct: 156 AQASQIRQIRRKMVEIMTNQASTCDLKELVSKFIPEVIGKEVEKATSSIFPLQNVFIRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_003558569.1| PREDICTED: 40S ribosomal protein S3a-like [Brachypodium distachyon]
          Length = 264

 Score =  142 bits (359), Expect = 4e-32
 Identities = 71/77 (92%), Positives = 76/77 (98%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQSSQIRQIRRKMVEIM NQA+SCDLKELVQKFIPEVIGKEIEKAT+SI+PLQNV++RKV
Sbjct: 156 AQSSQIRQIRRKMVEIMANQATSCDLKELVQKFIPEVIGKEIEKATSSIFPLQNVYVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|NP_001241430.1| uncharacterized protein LOC100813273 [Glycine max]
           gi|255642505|gb|ACU21516.1| unknown [Glycine max]
          Length = 261

 Score =  142 bits (359), Expect = 4e-32
 Identities = 71/77 (92%), Positives = 76/77 (98%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQSSQIRQIRRKM EIMTNQA+SCDLKELV+KFIPE+IGKEIEKAT+SIYPLQNVF+RKV
Sbjct: 156 AQSSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>gb|AFS65104.1| 40S ribosomal protein S3a-like protein [Elaeis guineensis]
          Length = 261

 Score =  142 bits (358), Expect = 5e-32
 Identities = 72/77 (93%), Positives = 75/77 (97%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKM EIM NQA+SCDLK+LVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV
Sbjct: 156 AQTSQIRQIRRKMREIMVNQAASCDLKDLVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_006838990.1| hypothetical protein AMTR_s00002p00271660 [Amborella trichopoda]
           gi|548841496|gb|ERN01559.1| hypothetical protein
           AMTR_s00002p00271660 [Amborella trichopoda]
          Length = 265

 Score =  142 bits (357), Expect = 6e-32
 Identities = 72/77 (93%), Positives = 75/77 (97%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKM EIM NQA+SCDLKELVQKFIPEVIGKEIEKAT+SIYPLQNVFIRKV
Sbjct: 161 AQTSQIRQIRRKMREIMVNQATSCDLKELVQKFIPEVIGKEIEKATSSIYPLQNVFIRKV 220

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 221 KILKAPKFDLGKLMEVH 237


>ref|NP_001049289.1| Os03g0200500 [Oryza sativa Japonica Group]
           gi|1350986|sp|P49397.2|RS3A_ORYSJ RecName: Full=40S
           ribosomal protein S3a; AltName: Full=CYC07 protein
           gi|582044884|pdb|3J60|B Chain B, Localization Of The
           Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-em
           Map Of Triticum Aestivum Translating 80s Ribosome
           gi|483431|dbj|BAA05059.1| cyc07 [Oryza sativa]
           gi|108706696|gb|ABF94491.1| 40S ribosomal protein S3a,
           putative, expressed [Oryza sativa Japonica Group]
           gi|113547760|dbj|BAF11203.1| Os03g0200500 [Oryza sativa
           Japonica Group] gi|125542785|gb|EAY88924.1| hypothetical
           protein OsI_10409 [Oryza sativa Indica Group]
           gi|125585284|gb|EAZ25948.1| hypothetical protein
           OsJ_09804 [Oryza sativa Japonica Group]
           gi|215697346|dbj|BAG91340.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215737408|dbj|BAG96538.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 262

 Score =  142 bits (357), Expect = 6e-32
 Identities = 71/77 (92%), Positives = 75/77 (97%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKMVEIM NQASSCDLKELV KFIPEVIGKEIEKAT+SI+PLQNVF+RKV
Sbjct: 156 AQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_003559021.1| PREDICTED: 40S ribosomal protein S3a-like [Brachypodium distachyon]
          Length = 265

 Score =  142 bits (357), Expect = 6e-32
 Identities = 71/77 (92%), Positives = 76/77 (98%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQSSQIRQIRRKMVEIM NQA+SCDLKELVQKFIPEVIGKEIEKAT+SI+PLQ+VF+RKV
Sbjct: 156 AQSSQIRQIRRKMVEIMVNQATSCDLKELVQKFIPEVIGKEIEKATSSIFPLQSVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>gb|EEE53089.1| hypothetical protein OsJ_35850 [Oryza sativa Japonica Group]
          Length = 764

 Score =  142 bits (357), Expect = 6e-32
 Identities = 71/77 (92%), Positives = 75/77 (97%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKMVEIM NQASSCDLKELV KFIPEVIGKEIEKAT+SI+PLQNVF+RKV
Sbjct: 156 AQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>gb|EEC69140.1| hypothetical protein OsI_38068 [Oryza sativa Indica Group]
          Length = 818

 Score =  142 bits (357), Expect = 6e-32
 Identities = 71/77 (92%), Positives = 75/77 (97%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKMVEIM NQASSCDLKELV KFIPEVIGKEIEKAT+SI+PLQNVF+RKV
Sbjct: 156 AQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|NP_001066631.1| Os12g0406200 [Oryza sativa Japonica Group]
           gi|108862547|gb|ABG21991.1| 40S ribosomal protein S3a,
           putative, expressed [Oryza sativa Japonica Group]
           gi|113649138|dbj|BAF29650.1| Os12g0406200 [Oryza sativa
           Japonica Group]
          Length = 260

 Score =  142 bits (357), Expect = 6e-32
 Identities = 71/77 (92%), Positives = 75/77 (97%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKMVEIM NQASSCDLKELV KFIPEVIGKEIEKAT+SI+PLQNVF+RKV
Sbjct: 156 AQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|NP_001276152.1| 40S ribosomal protein S3a-like [Glycine max]
           gi|255642692|gb|ACU22108.1| unknown [Glycine max]
          Length = 261

 Score =  141 bits (356), Expect = 8e-32
 Identities = 70/77 (90%), Positives = 76/77 (98%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQSSQIRQIRRKM EIMTNQA++CDLKELV+KFIPE+IGKEIEKAT+SIYPLQNVF+RKV
Sbjct: 156 AQSSQIRQIRRKMREIMTNQATACDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_007143300.1| hypothetical protein PHAVU_007G060700g [Phaseolus vulgaris]
           gi|561016490|gb|ESW15294.1| hypothetical protein
           PHAVU_007G060700g [Phaseolus vulgaris]
          Length = 261

 Score =  141 bits (355), Expect = 1e-31
 Identities = 70/77 (90%), Positives = 76/77 (98%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQSSQIRQIRRKM EIM+NQA+SCDLKELV+KFIPE+IGKEIEKAT+SIYPLQNVF+RKV
Sbjct: 156 AQSSQIRQIRRKMREIMSNQATSCDLKELVRKFIPEIIGKEIEKATSSIYPLQNVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_004985319.1| PREDICTED: 40S ribosomal protein S3a-like isoform X2 [Setaria
           italica]
          Length = 263

 Score =  141 bits (355), Expect = 1e-31
 Identities = 71/77 (92%), Positives = 75/77 (97%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKMVEIM NQAS+CDLKELV KFIPEVIGKEIEKAT+SI+PLQNVFIRKV
Sbjct: 156 AQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_006663974.1| PREDICTED: 40S ribosomal protein S3a-like [Oryza brachyantha]
          Length = 261

 Score =  140 bits (354), Expect = 1e-31
 Identities = 70/77 (90%), Positives = 75/77 (97%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKMVEIM NQASSCDLKELV KFIPEVIGKEIEK+T+SI+PLQNVF+RKV
Sbjct: 156 AQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_006663973.1| PREDICTED: 40S ribosomal protein S3a-like [Oryza brachyantha]
          Length = 261

 Score =  140 bits (354), Expect = 1e-31
 Identities = 70/77 (90%), Positives = 75/77 (97%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKMVEIM NQASSCDLKELV KFIPEVIGKEIEK+T+SI+PLQNVF+RKV
Sbjct: 156 AQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232


>ref|XP_006663971.1| PREDICTED: 40S ribosomal protein S3a-like [Oryza brachyantha]
          Length = 261

 Score =  140 bits (354), Expect = 1e-31
 Identities = 70/77 (90%), Positives = 75/77 (97%)
 Frame = -3

Query: 232 AQSSQIRQIRRKMVEIMTNQASSCDLKELVQKFIPEVIGKEIEKATTSIYPLQNVFIRKV 53
           AQ+SQIRQIRRKMVEIM NQASSCDLKELV KFIPEVIGKEIEK+T+SI+PLQNVF+RKV
Sbjct: 156 AQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFVRKV 215

Query: 52  KILKAPKFDLGKLMEVH 2
           KILKAPKFDLGKLMEVH
Sbjct: 216 KILKAPKFDLGKLMEVH 232