BLASTX nr result
ID: Cocculus23_contig00000706
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00000706
(549 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer ar... 129 4e-28
ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer ar... 128 8e-28
ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Popu... 111 1e-22
ref|YP_008992015.1| RNase_H [Citrus endogenous pararetrovirus] 109 5e-22
gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus] 109 5e-22
gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus] 109 5e-22
ref|YP_008992013.1| polyprotein [Citrus endogenous pararetroviru... 109 5e-22
gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein... 106 3e-21
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 103 4e-20
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain... 103 4e-20
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]... 103 4e-20
ref|XP_006405940.1| hypothetical protein EUTSA_v10028344mg [Eutr... 102 8e-20
ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, part... 96 5e-18
ref|XP_006408598.1| hypothetical protein EUTSA_v10002258mg, part... 93 5e-17
ref|XP_004500032.1| PREDICTED: genome polyprotein-like [Cicer ar... 89 7e-16
ref|XP_006403348.1| hypothetical protein EUTSA_v10003399mg, part... 87 4e-15
ref|XP_004511185.1| PREDICTED: genome polyprotein-like [Cicer ar... 86 6e-15
gb|AGT41978.1| reverse transcriptase [Dahlia mosaic virus] 80 4e-13
ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic prote... 76 6e-12
ref|YP_006607892.1| reverse transcriptase [Soybean Putnam virus]... 75 1e-11
>ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1170
Score = 129 bits (325), Expect = 4e-28
Identities = 62/93 (66%), Positives = 68/93 (73%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F + E HYHT YKE LAVK GI KF+FHLR FEVQMDNSSFP+IL+F NK PDPQ L
Sbjct: 1004 FKEAEKHYHTTYKEALAVKLGIQKFDFHLRGYQFEVQMDNSSFPRILEFKNKMPPDPQTL 1063
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRPFPS 154
RL+ WFSRY F VKHI G NL+ D L RP S
Sbjct: 1064 RLKDWFSRYDFTVKHIKGNQNLIPDLLSRPMKS 1096
>ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1951
Score = 128 bits (322), Expect = 8e-28
Identities = 61/90 (67%), Positives = 67/90 (74%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F + E HYHT YKE LAVK GI KF+FHLR FEVQMDNSSFP+IL+F NK PDPQ L
Sbjct: 1671 FKEAEKHYHTTYKEALAVKLGIQKFDFHLRGYQFEVQMDNSSFPRILEFKNKMPPDPQTL 1730
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRP 163
RL+ WFSRY F VKHI G NL+ D L RP
Sbjct: 1731 RLKDWFSRYDFTVKHIKGNQNLIPDLLSRP 1760
>ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Populus trichocarpa]
gi|550349213|gb|EEE85243.2| hypothetical protein
POPTR_0001s38890g [Populus trichocarpa]
Length = 309
Score = 111 bits (278), Expect = 1e-22
Identities = 55/90 (61%), Positives = 62/90 (68%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F + E HYH+ +KEILAVK GI KFEFHL F V MD SSFPK+LQF K LP PQLL
Sbjct: 57 FKESETHYHSTFKEILAVKYGIQKFEFHLVAYHFTVIMDCSSFPKMLQFKRKMLPHPQLL 116
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRP 163
RL WF +Y F V+HI G NL+ D L RP
Sbjct: 117 RLAEWFPKYTFTVEHIKGTKNLIPDMLTRP 146
>ref|YP_008992015.1| RNase_H [Citrus endogenous pararetrovirus]
Length = 124
Score = 109 bits (272), Expect = 5e-22
Identities = 53/90 (58%), Positives = 61/90 (67%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F E +YH IYKEIL VK GI KFEFHL F + MDNSSFP+I F NK L D QLL
Sbjct: 33 FKHSEKNYHVIYKEILTVKYGIKKFEFHLISHTFLINMDNSSFPRIFDFKNKLLLDKQLL 92
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRP 163
L+ WF++Y F V+HI G NL+ DFL RP
Sbjct: 93 NLKTWFAKYDFTVQHIKGNQNLIPDFLTRP 122
>gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1701
Score = 109 bits (272), Expect = 5e-22
Identities = 53/90 (58%), Positives = 61/90 (67%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F E +YH IYKEIL VK GI KFEFHL F + MDNSSFP+I F NK L D QLL
Sbjct: 1559 FKHSEKNYHVIYKEILTVKYGIKKFEFHLISHTFLINMDNSSFPRIFDFKNKLLLDKQLL 1618
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRP 163
L+ WF++Y F V+HI G NL+ DFL RP
Sbjct: 1619 NLKTWFAKYDFTVQHIKGNQNLIPDFLTRP 1648
>gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1799
Score = 109 bits (272), Expect = 5e-22
Identities = 53/90 (58%), Positives = 61/90 (67%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F E +YH IYKEIL VK GI KFEFHL F + MDNSSFP+I F NK L D QLL
Sbjct: 1657 FKHSEKNYHVIYKEILTVKYGIKKFEFHLISHTFLINMDNSSFPRIFDFKNKLLLDKQLL 1716
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRP 163
L+ WF++Y F V+HI G NL+ DFL RP
Sbjct: 1717 NLKTWFAKYDFTVQHIKGNQNLIPDFLTRP 1746
>ref|YP_008992013.1| polyprotein [Citrus endogenous pararetrovirus]
gi|565672276|gb|AHC13194.1| polyprotein [Citrus
endogenous pararetrovirus]
Length = 1812
Score = 109 bits (272), Expect = 5e-22
Identities = 53/90 (58%), Positives = 61/90 (67%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F E +YH IYKEIL VK GI KFEFHL F + MDNSSFP+I F NK L D QLL
Sbjct: 1670 FKHSEKNYHVIYKEILTVKYGIKKFEFHLISHTFLINMDNSSFPRIFDFKNKLLLDKQLL 1729
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRP 163
L+ WF++Y F V+HI G NL+ DFL RP
Sbjct: 1730 NLKTWFAKYDFTVQHIKGNQNLIPDFLTRP 1759
>gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein clearing virus]
Length = 758
Score = 106 bits (265), Expect = 3e-21
Identities = 49/91 (53%), Positives = 64/91 (70%)
Frame = -1
Query: 435 YFSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQL 256
+F E HYH+ +KEILAVK+GI KF+ HL F+++MD SSFP++L F K +P+ QL
Sbjct: 323 HFKDSEKHYHSTFKEILAVKRGIEKFQIHLIGHHFQIEMDMSSFPRMLHFKQKTIPNSQL 382
Query: 255 LRLQAWFSRYQFHVKHIPGRSNLLADFLFRP 163
LR WFSR+ F VKHI G++N L D L RP
Sbjct: 383 LRWAXWFSRFDFQVKHIKGKNNTLPDMLTRP 413
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 103 bits (256), Expect = 4e-20
Identities = 49/90 (54%), Positives = 63/90 (70%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F E HYH+ +KEILAVK GI KF F L +F V+MD +FPK+++ + K +P+ QLL
Sbjct: 1717 FKVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLVEMDMRAFPKMIRLNPKIVPNSQLL 1776
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRP 163
R WFS YQF VKH+ G+ N+LADFL RP
Sbjct: 1777 RWAQWFSPYQFEVKHLKGKDNILADFLSRP 1806
>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
protein; Short=MP; Contains: RecName: Full=Capsid
protein; Short=CP; Contains: RecName: Full=Aspartic
protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 103 bits (256), Expect = 4e-20
Identities = 49/90 (54%), Positives = 63/90 (70%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F E HYH+ +KEILAVK GI KF F L +F V+MD +FPK+++ + K +P+ QLL
Sbjct: 1717 FKVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLVEMDMRAFPKMIRLNPKIVPNSQLL 1776
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRP 163
R WFS YQF VKH+ G+ N+LADFL RP
Sbjct: 1777 RWAQWFSPYQFEVKHLKGKDNILADFLSRP 1806
>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
polyprotein; Contains: RecName: Full=Movement protein;
Short=MP; Contains: RecName: Full=Capsid protein;
Short=CP; Contains: RecName: Full=Aspartic protease;
Short=PR; Contains: RecName: Full=Reverse transcriptase;
Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
[petunia vein clearing virus]
Length = 2179
Score = 103 bits (256), Expect = 4e-20
Identities = 49/90 (54%), Positives = 63/90 (70%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F E HYH+ +KEILAVK GI KF F L +F V+MD +FPK+++ + K +P+ QLL
Sbjct: 1716 FKVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLVEMDMRAFPKMIRLNPKIVPNSQLL 1775
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRP 163
R WFS YQF VKH+ G+ N+LADFL RP
Sbjct: 1776 RWAQWFSPYQFEVKHLKGKDNILADFLSRP 1805
>ref|XP_006405940.1| hypothetical protein EUTSA_v10028344mg [Eutrema salsugineum]
gi|557107078|gb|ESQ47393.1| hypothetical protein
EUTSA_v10028344mg [Eutrema salsugineum]
Length = 1508
Score = 102 bits (253), Expect = 8e-20
Identities = 50/85 (58%), Positives = 61/85 (71%)
Frame = -1
Query: 420 ELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLLRLQA 241
E HYH+ YKEILAVK+GI KF FHL F ++MD SSFPK++QF K LP QLLR +
Sbjct: 1128 EKHYHSTYKEILAVKRGIEKFGFHLVGQHFLIEMDMSSFPKMIQFKQKILPQAQLLRWAS 1187
Query: 240 WFSRYQFHVKHIPGRSNLLADFLFR 166
WFS+++F VKH G+ N L DFL R
Sbjct: 1188 WFSQWKFDVKHNIGKDNFLPDFLSR 1212
>ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
gi|557090298|gb|ESQ31006.1| hypothetical protein
EUTSA_v10012231mg, partial [Eutrema salsugineum]
Length = 1904
Score = 96.3 bits (238), Expect = 5e-18
Identities = 46/84 (54%), Positives = 59/84 (70%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F E HYH+ YKEILAVK+GI KFE H+ F ++MD SSF K++QF K LP QLL
Sbjct: 1564 FKDSEKHYHSTYKEILAVKRGIEKFESHIVGQHFLIEMDMSSFSKMIQFKQKILPQAQLL 1623
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLA 181
R +WFS+++F VKHI G+ N L+
Sbjct: 1624 RWASWFSQWKFDVKHIKGKDNFLS 1647
>ref|XP_006408598.1| hypothetical protein EUTSA_v10002258mg, partial [Eutrema
salsugineum] gi|557109754|gb|ESQ50051.1| hypothetical
protein EUTSA_v10002258mg, partial [Eutrema salsugineum]
Length = 260
Score = 92.8 bits (229), Expect = 5e-17
Identities = 46/76 (60%), Positives = 56/76 (73%)
Frame = -1
Query: 393 EILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLLRLQAWFSRYQFHV 214
EILAVK+GI KFEFHL F ++MD SSFPK++QF K LP QLLR +WFS+++F V
Sbjct: 35 EILAVKRGIEKFEFHLVGQHFLIEMDMSSFPKMIQFKQKILPQAQLLRWASWFSQWKFDV 94
Query: 213 KHIPGRSNLLADFLFR 166
KHI G+ N L DFL R
Sbjct: 95 KHIKGKYNFLPDFLSR 110
>ref|XP_004500032.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 313
Score = 89.0 bits (219), Expect = 7e-16
Identities = 43/66 (65%), Positives = 48/66 (72%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F + E HYHT YKE LAVK GI KF+FHLR FEVQMDNS FP+IL+F NK DPQ L
Sbjct: 242 FKEAEKHYHTTYKEALAVKLGIQKFDFHLRGYQFEVQMDNSYFPRILEFKNKMSSDPQTL 301
Query: 252 RLQAWF 235
RL+ F
Sbjct: 302 RLKDCF 307
>ref|XP_006403348.1| hypothetical protein EUTSA_v10003399mg, partial [Eutrema
salsugineum] gi|557104461|gb|ESQ44801.1| hypothetical
protein EUTSA_v10003399mg, partial [Eutrema salsugineum]
Length = 187
Score = 86.7 bits (213), Expect = 4e-15
Identities = 45/91 (49%), Positives = 56/91 (61%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDPQLL 253
F E+HYH+ +KEILAVKK I KFEFHL F ++MD SSFPK+LQF K +P QLL
Sbjct: 61 FKDSEMHYHSTFKEILAVKKAIEKFEFHLIGHKFRIEMDMSSFPKMLQFKQKMVPHQQLL 120
Query: 252 RLQAWFSRYQFHVKHIPGRSNLLADFLFRPF 160
R WFS+ + G + LL L+ F
Sbjct: 121 RWSEWFSKLS---RGTRGNTELLPALLYSRF 148
>ref|XP_004511185.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 803
Score = 85.9 bits (211), Expect = 6e-15
Identities = 40/57 (70%), Positives = 44/57 (77%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNKQLPDP 262
F + E HYHT YKE LAVK GI KF+FHLR FEVQMDNSSFP+IL+F NK PDP
Sbjct: 747 FKEAEKHYHTTYKEALAVKLGIHKFDFHLRGYQFEVQMDNSSFPRILEFKNKMPPDP 803
>gb|AGT41978.1| reverse transcriptase [Dahlia mosaic virus]
Length = 825
Score = 79.7 bits (195), Expect = 4e-13
Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFH----NKQLPD 265
F E +YH+ KE+LAVK I KF +L V F V+ DN +F L+ NKQ
Sbjct: 728 FKTAEKNYHSNEKELLAVKNTISKFSIYLIPVKFLVRTDNRNFTYFLKTKISGDNKQ--- 784
Query: 264 PQLLRLQAWFSRYQFHVKHIPGRSNLLADFLFRPFPSHSP 145
+L+R Q WFSRY F ++H+ G N+LADFL R F S+SP
Sbjct: 785 GRLVRWQMWFSRYSFDIEHLEGPKNVLADFLTRDFQSNSP 824
>ref|NP_619548.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
Reverse transcriptase] [Figwort mosaic virus]
gi|130600|sp|P09523.1|POL_FMVD RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58813|emb|CAA29527.1|
unnamed protein product [Figwort mosaic virus]
Length = 666
Score = 75.9 bits (185), Expect = 6e-12
Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNK-QLPDPQL 256
F Q E +YH+ KE+LAVK+ I KF +L V F V+ DN +F L+ + K +L
Sbjct: 573 FKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRL 632
Query: 255 LRLQAWFSRYQFHVKHIPGRSNLLADFLFRPF 160
+R Q WFS+YQF V+H+ G N+LAD L R F
Sbjct: 633 VRWQNWFSKYQFDVEHLEGVKNVLADCLTRDF 664
>ref|YP_006607892.1| reverse transcriptase [Soybean Putnam virus]
gi|401620160|gb|AFP95350.1| reverse transcriptase
[Soybean Putnam virus]
Length = 699
Score = 74.7 bits (182), Expect = 1e-11
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Frame = -1
Query: 432 FSQLELHYHTIYKEILAVKKGILKFEFHLRQVDFEVQMDNSSFPKILQFHNK-QLPDPQL 256
F EL+YH+ KEILAV I KF +L V F ++ DN +F L+ + K +L
Sbjct: 606 FKAAELNYHSNEKEILAVMNTIKKFTGYLTPVKFLIRTDNKNFTHFLKINLKGDYKQGRL 665
Query: 255 LRLQAWFSRYQFHVKHIPGRSNLLADFLFRPF 160
+R Q WFSRY F V+H+ G N+ ADFL R F
Sbjct: 666 VRWQMWFSRYVFEVEHLSGDKNVFADFLTREF 697