BLASTX nr result
ID: Cocculus23_contig00000516
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00000516
(698 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 336 4e-90
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 335 1e-89
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 333 2e-89
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 333 4e-89
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 332 7e-89
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 328 1e-87
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 327 2e-87
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 327 2e-87
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [... 327 2e-87
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr... 326 5e-87
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza] 325 7e-87
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 324 2e-86
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 322 6e-86
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 321 1e-85
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 319 5e-85
gb|EXB53890.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 319 6e-85
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 317 2e-84
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 314 2e-83
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 313 5e-83
gb|EXB53891.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 312 8e-83
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 336 bits (862), Expect = 4e-90
Identities = 170/232 (73%), Positives = 189/232 (81%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLRENSAWMFA +D LTAAHIR WMGDF IRNVAKYAARLGQSFSSS+
Sbjct: 448 KKFEFLAFSSSQLRENSAWMFAPRDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSR 507
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL V T+Y+FSDGIGKIS FA+KVAKKCG+ F PSAFQIRY
Sbjct: 508 ETLNVRSDEIEVIPDVEAMYLDTRYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRY 567
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDPNS KLSLRKSM K+ S NT LDVL WSK QPC+LNRQ+ITLLSTLGVK
Sbjct: 568 GGYKGVVAVDPNSSKKLSLRKSMSKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVK 627
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
DN+FEKKQ+EVVD+LD ILTDPL A EAL +M+PGEN N+LK++L CGYKP+
Sbjct: 628 DNVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKQLLLCGYKPD 679
>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 335 bits (858), Expect = 1e-89
Identities = 167/232 (71%), Positives = 189/232 (81%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLRENSAWMFA DGLT+AHIR WMGDF IRNVAKYAARLGQSFSSS+
Sbjct: 439 KKFEFLAFSSSQLRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSR 498
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL V GT+Y+FSDGIGKIS FA++VAKKCG+ F PSAFQIRY
Sbjct: 499 ETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRY 558
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDPNS KLSLRKSM K+ S NT LDVL WSK QPC++NRQLITLLSTLG+K
Sbjct: 559 GGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGIK 618
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FEKKQ+EVVD+LD ILTDPL A EAL +M+PGEN N+LK ++ CGYKP+
Sbjct: 619 DSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPD 670
>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 333 bits (855), Expect = 2e-89
Identities = 167/232 (71%), Positives = 189/232 (81%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLRENSAWMFA DGLT+AHIR WMGDF IRNVAKYAARLGQSFSSS+
Sbjct: 449 KKFEFLAFSSSQLRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSR 508
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL V GT+Y+FSDGIGKIS FA++VAKKCG+ F PSAFQIRY
Sbjct: 509 ETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRY 568
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDPNS KLSLRKSM K+ S NT LDVL WSK QPC++NRQLITLLSTLGVK
Sbjct: 569 GGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVK 628
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++F+KKQ+EVVD+LD ILTDPL A EAL +M+PGEN N+LK ++ CGYKP+
Sbjct: 629 DSVFKKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPD 680
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 333 bits (853), Expect = 4e-89
Identities = 172/232 (74%), Positives = 186/232 (80%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKFD LA SSSQLR+NSAWMFAS+ GLTAA IR MGDF +IRNVAKYAARLGQSFSSSK
Sbjct: 438 KKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSK 497
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL V R+GT Y+FSDGIGKIS A +VA KCG + PSAFQIRY
Sbjct: 498 ETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRY 557
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDP S KLSLRKSMFKY S NT LDVL WSK +PCFLNRQLITLLSTLGVK
Sbjct: 558 GGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVK 617
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FEKKQ+E VDQLD IL DPLRA EALE+MSPGEN N+LKEML CGYKP+
Sbjct: 618 DHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPD 669
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 332 bits (851), Expect = 7e-89
Identities = 166/232 (71%), Positives = 189/232 (81%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLRENSAWMFA +GLT+AHIR WMGDF IRNVAKYAARLGQSFSSS+
Sbjct: 449 KKFEFLAFSSSQLRENSAWMFAPIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSR 508
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL V GT+Y+FSDGIGKIS FA++VAKKCG+ F PSAFQIRY
Sbjct: 509 ETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRY 568
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDPNS KLSLRKSM K+ S NT LDVL WSK QPC++NRQLITLLSTLGV+
Sbjct: 569 GGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVE 628
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FEKKQ+EVVD+LD ILTDPL A EAL +M+PGEN N+LK ++ CGYKP+
Sbjct: 629 DSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPD 680
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 328 bits (840), Expect = 1e-87
Identities = 170/232 (73%), Positives = 183/232 (78%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKFD LAFSSSQLR+NSAWMFAS+ GLTAA IR WMGDF +IRNVAKYAARLGQSFSSSK
Sbjct: 440 KKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSK 499
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL V + T Y+FSDGIGKIS A +VA KCG + PSAFQIRY
Sbjct: 500 ETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRY 559
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDP S KLSLRKSMFKY S NT LDVL WSK QP FLNRQLITLLSTLGVK
Sbjct: 560 GGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVK 619
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FEKKQ+ VDQLD IL DP+ A EALE+MSPGEN NVLKEML CGYKP+
Sbjct: 620 DHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPD 671
>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 327 bits (839), Expect = 2e-87
Identities = 165/232 (71%), Positives = 186/232 (80%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLRENSAWMFA D +TAAHIR WMGDF IRNVAKYAARLGQSFSSS+
Sbjct: 448 KKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSR 507
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL V GT+Y+FSDGIGKIS FA+KVA+KCG+ F PSAFQIRY
Sbjct: 508 ETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRY 567
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDPNS KLSLRKSM K+ S NT LDVL WSK QPC++NRQLITLLSTLGV
Sbjct: 568 GGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVT 627
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FEKKQ+EVVD+LD ILT PL A EAL +M+PGEN N+LK ++ CGYKP+
Sbjct: 628 DSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPD 679
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 327 bits (839), Expect = 2e-87
Identities = 165/232 (71%), Positives = 186/232 (80%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLRENSAWMFA D +TAAHIR WMGDF IRNVAKYAARLGQSFSSS+
Sbjct: 448 KKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSR 507
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL V GT+Y+FSDGIGKIS FA+KVA+KCG+ F PSAFQIRY
Sbjct: 508 ETLNVRSDEIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRY 567
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDPNS KLSLRKSM K+ S NT LDVL WSK QPC++NRQLITLLSTLGV
Sbjct: 568 GGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVT 627
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FEKKQ+EVVD+LD ILT PL A EAL +M+PGEN N+LK ++ CGYKP+
Sbjct: 628 DSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPD 679
>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
family protein [Populus trichocarpa]
Length = 1133
Score = 327 bits (839), Expect = 2e-87
Identities = 168/232 (72%), Positives = 187/232 (80%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLRENS WMFAS+ GLTAA IR WMG FH+IRNVA+YAARLGQSF SS
Sbjct: 451 KKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSST 510
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL+V+ R GT+Y+FSDGIGKIS FA+KVA KCG + F PSAFQIRY
Sbjct: 511 ETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRY 570
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GYKGVVAVDP S KLSLR+SMFKY S NT LDVL SK QPCFLNRQLITLLSTLGV
Sbjct: 571 AGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVP 630
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D+ FE+KQ+E VDQLD +LTDPLRA EALE+MSPGEN N+LKEML CGY+P+
Sbjct: 631 DHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPD 682
>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
gi|557094740|gb|ESQ35322.1| hypothetical protein
EUTSA_v10006629mg [Eutrema salsugineum]
Length = 1108
Score = 326 bits (835), Expect = 5e-87
Identities = 166/232 (71%), Positives = 185/232 (79%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLRENSAWMFA DGL+A IR WMGDF IRNVAKYAARLGQSFSSS+
Sbjct: 448 KKFEFLAFSSSQLRENSAWMFAPIDGLSAEIIRAWMGDFEHIRNVAKYAARLGQSFSSSR 507
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL V GT+Y+FSDGIGKIS FA++VAKKCG+ F PSAFQIRY
Sbjct: 508 ETLNVRTDEIEVIPDVEITYLGTRYVFSDGIGKISSEFARRVAKKCGLTEFTPSAFQIRY 567
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVD NS KLSLRKSM K+ S NT LDVL WSK QPC+LNRQLITLLSTLGVK
Sbjct: 568 GGYKGVVAVDRNSYKKLSLRKSMSKFESKNTKLDVLAWSKYQPCYLNRQLITLLSTLGVK 627
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D +FEKKQ+EVVD+LD ILTDPL A EAL +M+PGEN +LKE++ CGYKP+
Sbjct: 628 DYVFEKKQREVVDKLDAILTDPLEAHEALGLMAPGENTKILKELILCGYKPD 679
>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
Length = 1101
Score = 325 bits (834), Expect = 7e-87
Identities = 166/232 (71%), Positives = 183/232 (78%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
K+F LAFSSSQLRENS WMFA DGLTA IR WMGDF IRNVAKYAARLGQSFSSS
Sbjct: 444 KRFQFLAFSSSQLRENSLWMFAPVDGLTADDIRRWMGDFSSIRNVAKYAARLGQSFSSST 503
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL V R+GT YIFSDGIGKIS FA++VA KCGI +PSAFQIRY
Sbjct: 504 ETLKVAQYEVERIPDVEVVRDGTTYIFSDGIGKISSDFARRVATKCGIRDGVPSAFQIRY 563
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDP S KLSLRKSM KY S NT LDVL WSK QPCF+NRQ+ITLLSTLGV+
Sbjct: 564 GGYKGVVAVDPTSSMKLSLRKSMLKYQSDNTKLDVLSWSKYQPCFMNRQIITLLSTLGVR 623
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FEKKQ+E V QLD IL DPL+A +AL++MSPGEN N+LKEML CGYKP+
Sbjct: 624 DHVFEKKQREAVAQLDDILVDPLKAQDALDLMSPGENTNILKEMLKCGYKPD 675
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 324 bits (830), Expect = 2e-86
Identities = 166/232 (71%), Positives = 187/232 (80%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
K+F+ LAFSSSQLRENSAWMFAS+ GLTAA IR WMG+F +IRNVAKYAARLGQSFSSS
Sbjct: 444 KRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSST 503
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL+V+ ++G KY+FSDGIGKIS FA+KVA KC ++ PSAFQIR
Sbjct: 504 ETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRI 563
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GG+KGVVA+DP S KLSLRKSM KY S NT LDVL WSK QPCFLNRQLITLLSTLGV
Sbjct: 564 GGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVP 623
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D FEKKQ+EVVDQL+ +LTDPL A EALE+MSPGEN N+LKEML CGYKP+
Sbjct: 624 DRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPD 675
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 322 bits (826), Expect = 6e-86
Identities = 166/232 (71%), Positives = 186/232 (80%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
+KF+ LAFSSSQLRE+SAWMFAS+ GLTAA IREWMG+F EIRNVAKYAARLGQSFSSSK
Sbjct: 455 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 514
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL+V+ TKY+FSDGIGK+S FA+KVA KCG++ PSAFQIRY
Sbjct: 515 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRY 574
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVA DP S KLSLR SM KY S T LDVL WSK QPCFLNRQLI+LLSTLG+
Sbjct: 575 GGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIW 634
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D IFEKKQ+E V QLD ILTDPL+A EALE+MSPGEN N+LKE+L CGYKP+
Sbjct: 635 DEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPD 686
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 321 bits (823), Expect = 1e-85
Identities = 165/232 (71%), Positives = 186/232 (80%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
K+F+ LAFSSSQLRENSAWMFAS+ GLTAA IR WMG+F +IRNVAKYAARLGQSFSSS
Sbjct: 444 KRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSST 503
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL+V+ ++G KY+F DGIGKIS FA+KVA KC ++ PSAFQIR
Sbjct: 504 ETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRI 563
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GG+KGVVA+DP S KLSLRKSM KY S NT LDVL WSK QPCFLNRQLITLLSTLGV
Sbjct: 564 GGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVP 623
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D FEKKQ+EVVDQL+ +LTDPL A EALE+MSPGEN N+LKEML CGYKP+
Sbjct: 624 DYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPD 675
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 319 bits (818), Expect = 5e-85
Identities = 165/232 (71%), Positives = 186/232 (80%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
K+F+ LAFSSSQLRENSAWMFAS++GLTAA IR WMG+F +IRNVAKYAARLGQSFSSS
Sbjct: 444 KQFEFLAFSSSQLRENSAWMFASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSST 503
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL+V R+G Y+FSDGIGKIS FA+KVA KC + PSAFQIR
Sbjct: 504 ETLSVAKDEIEIIDDVEIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRI 563
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GG+KGVVAVDP S KLSLR SM KY S NT LDVL WSK QPCFLNRQLITLLSTLGV
Sbjct: 564 GGFKGVVAVDPTSSKKLSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVP 623
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D+ FE+KQ+EVVDQL+ ILTDPL+A EALE+MSPGEN N+LKEML CGY+P+
Sbjct: 624 DHAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPD 675
>gb|EXB53890.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 885
Score = 319 bits (817), Expect = 6e-85
Identities = 164/232 (70%), Positives = 181/232 (78%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLRE SAWMFAS+DGLTAA IR+WMGDF I+NVAKYAARLGQSF SS
Sbjct: 256 KKFEFLAFSSSQLREGSAWMFASRDGLTAADIRKWMGDFRCIKNVAKYAARLGQSFGSSH 315
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ET V R+G Y FSDGIGKIS FA++VAKKCG+ RF PSAFQIRY
Sbjct: 316 ETFRVGRHEVELIPDIQVERDGKNYCFSDGIGKISEDFAREVAKKCGLNRFTPSAFQIRY 375
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDP S KLSLRKSM KY S N LDVL WSK QPCFLNRQLITLLSTLGV
Sbjct: 376 GGYKGVVAVDPTSSMKLSLRKSMCKYESKNNKLDVLAWSKYQPCFLNRQLITLLSTLGVS 435
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FEKKQKE V++L+ ILTD LRA + L++M PGE N LKEML CGY+PN
Sbjct: 436 DHVFEKKQKETVNRLESILTDSLRAQDELKMMFPGEITNTLKEMLMCGYEPN 487
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 317 bits (813), Expect = 2e-84
Identities = 161/232 (69%), Positives = 184/232 (79%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
+KFD LAFSSSQLR+NS WMFA DGL A IREWMGDF IRNVAKYAARLGQSF SS
Sbjct: 441 RKFDFLAFSSSQLRDNSLWMFAPTDGLNADGIREWMGDFSSIRNVAKYAARLGQSFGSST 500
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL+V+ +NGT+Y FSDGIGKIS FA++VA KCG+ PSAFQIRY
Sbjct: 501 ETLSVS---KREIEEIQDVKNGTEYTFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRY 557
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDP+S KLSLR SM KY S NT LDVL WSK QPCFLNRQ+ITLLSTLGVK
Sbjct: 558 GGYKGVVAVDPSSKKKLSLRPSMLKYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVK 617
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FEK+Q+E V QLD +L DP+RA EAL++MSPGEN ++LKEML CGY+P+
Sbjct: 618 DHVFEKRQREAVAQLDDVLIDPMRAQEALDLMSPGENTHILKEMLKCGYEPD 669
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 314 bits (804), Expect = 2e-83
Identities = 162/232 (69%), Positives = 184/232 (79%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLR+NS WMFAS+ GLTA IR WMGDF +I+NVAKYAARLGQSF SSK
Sbjct: 440 KKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSK 499
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL+V +GT Y+FSDGIGKIS FA++VA KCG++ + PSAFQIRY
Sbjct: 500 ETLSV--LRHEIEIIPDVKVHGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRY 556
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDP S KLSLRKSM KY S N LDVL+WSK QPCFLNRQL+TLLSTLGVK
Sbjct: 557 GGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVK 616
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++ E+KQKE VDQLD IL D L+A EALE+MSPGEN N+LK ML CGY P+
Sbjct: 617 DDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPD 668
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 313 bits (801), Expect = 5e-83
Identities = 160/232 (68%), Positives = 182/232 (78%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLR+NS WMFAS+ GLTA IR WMG F +IRNVAKYAARLGQSF SS+
Sbjct: 441 KKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSR 500
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ETL+V +GT YIFSDGIGKIS FA++VA KCG++ + PS FQIRY
Sbjct: 501 ETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQ-YTPSCFQIRY 559
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDP S KLSLR SM KY S+N LDVL WSK QPC+LNRQL+TLLSTLGVK
Sbjct: 560 GGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVK 619
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FE+KQ E VDQLD IL D L+A EALE+MSPGEN N+LKEML CGY P+
Sbjct: 620 DDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPD 671
>gb|EXB53891.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1118
Score = 312 bits (799), Expect = 8e-83
Identities = 160/232 (68%), Positives = 180/232 (77%)
Frame = +2
Query: 2 KKFDLLAFSSSQLRENSAWMFASKDGLTAAHIREWMGDFHEIRNVAKYAARLGQSFSSSK 181
KKF+ LAFSSSQLRE S WMFAS+DGLTAA+IR+WMGDF I+NVAKYAARLGQSF SS
Sbjct: 417 KKFEFLAFSSSQLREGSTWMFASRDGLTAANIRKWMGDFRCIKNVAKYAARLGQSFGSSH 476
Query: 182 ETLTVNWXXXXXXXXXXXXRNGTKYIFSDGIGKISHTFAQKVAKKCGIERFIPSAFQIRY 361
ET V R+G Y FSDGIGKIS FA++VAKKCG+ RF PSAFQIRY
Sbjct: 477 ETFRVGRHEVELIPDIQVERDGKNYCFSDGIGKISEDFAKEVAKKCGLNRFTPSAFQIRY 536
Query: 362 GGYKGVVAVDPNSVTKLSLRKSMFKYTSHNTGLDVLQWSKPQPCFLNRQLITLLSTLGVK 541
GGYKGVVAVDP S KLSLR+SM K + N LDVL WSK QPCFLNRQLITLLSTLGV
Sbjct: 537 GGYKGVVAVDPTSSMKLSLRESMCKCEAKNNKLDVLAWSKYQPCFLNRQLITLLSTLGVS 596
Query: 542 DNIFEKKQKEVVDQLDMILTDPLRAIEALEIMSPGENVNVLKEMLTCGYKPN 697
D++FEKKQKE V++L+ ILTD LRA + L++M PGE N LKEML CGY+PN
Sbjct: 597 DHVFEKKQKETVNRLESILTDSLRAQDELKMMFPGEITNTLKEMLMCGYEPN 648