BLASTX nr result
ID: Cocculus22_contig00028317
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00028317
(435 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB60117.1| hypothetical protein L484_013382 [Morus notabilis] 89 8e-16
ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containi... 85 1e-14
ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containi... 77 2e-12
emb|CBI15606.3| unnamed protein product [Vitis vinifera] 77 2e-12
ref|XP_006390093.1| hypothetical protein EUTSA_v10019853mg [Eutr... 76 4e-12
ref|XP_004244895.1| PREDICTED: pentatricopeptide repeat-containi... 76 6e-12
ref|XP_007019149.1| Pentatricopeptide repeat (PPR) superfamily p... 75 1e-11
ref|XP_007019148.1| Pentatricopeptide repeat superfamily protein... 75 1e-11
ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. l... 75 1e-11
ref|XP_006302269.1| hypothetical protein CARUB_v10020312mg [Caps... 74 3e-11
ref|XP_004292714.1| PREDICTED: pentatricopeptide repeat-containi... 73 5e-11
ref|XP_007227306.1| hypothetical protein PRUPE_ppa016683mg [Prun... 72 8e-11
gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thal... 71 1e-10
ref|NP_177865.2| pentatricopeptide repeat-containing protein [Ar... 71 1e-10
ref|XP_006351204.1| PREDICTED: pentatricopeptide repeat-containi... 70 2e-10
ref|XP_002520332.1| pentatricopeptide repeat-containing protein,... 70 4e-10
ref|XP_006472819.1| PREDICTED: pentatricopeptide repeat-containi... 69 7e-10
ref|XP_006434253.1| hypothetical protein CICLE_v10003743mg [Citr... 69 9e-10
ref|XP_006386364.1| hypothetical protein POPTR_0002s08080g [Popu... 67 3e-09
gb|EYU23868.1| hypothetical protein MIMGU_mgv1a005901mg [Mimulus... 66 4e-09
>gb|EXB60117.1| hypothetical protein L484_013382 [Morus notabilis]
Length = 444
Score = 88.6 bits (218), Expect = 8e-16
Identities = 45/80 (56%), Positives = 56/80 (70%)
Frame = -2
Query: 242 LHKHPFSSSQKLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFF 63
L K +S ++VNQ++ AMLQ+RP + +T SS W+ V E+LRSVPRFFF
Sbjct: 3 LSKSLYSKYTRIVNQILTAMLQNRPFDSHLT------SSSLRWSAEAVSEVLRSVPRFFF 56
Query: 62 QSTRSIGRQKGFRHRAPLKQ 3
QS RSIGRQKGFRHR+PLKQ
Sbjct: 57 QSPRSIGRQKGFRHRSPLKQ 76
>ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Cucumis sativus]
gi|449518241|ref|XP_004166151.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g77405-like [Cucumis sativus]
Length = 445
Score = 84.7 bits (208), Expect = 1e-14
Identities = 38/73 (52%), Positives = 54/73 (73%)
Frame = -2
Query: 221 SSQKLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIG 42
S+ +LV+Q++ AML++RP + + A+ + W+ ++V ++LRSVPRFFFQS RSIG
Sbjct: 10 SNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRFFFQSARSIG 69
Query: 41 RQKGFRHRAPLKQ 3
QKGFRHR PLKQ
Sbjct: 70 TQKGFRHRTPLKQ 82
>ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Vitis vinifera]
Length = 432
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/78 (51%), Positives = 52/78 (66%)
Frame = -2
Query: 236 KHPFSSSQKLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQS 57
K + LV QV+AAM+Q+ PL+ + + WT ++V E+LRS+PR FFQS
Sbjct: 5 KPRYHHRSSLVKQVLAAMVQNCPLD-----ASPNKSCNQPWTTDSVSEVLRSIPRLFFQS 59
Query: 56 TRSIGRQKGFRHRAPLKQ 3
RSIGRQKGFRHR+PLKQ
Sbjct: 60 PRSIGRQKGFRHRSPLKQ 77
>emb|CBI15606.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/78 (51%), Positives = 52/78 (66%)
Frame = -2
Query: 236 KHPFSSSQKLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQS 57
K + LV QV+AAM+Q+ PL+ + + WT ++V E+LRS+PR FFQS
Sbjct: 5 KPRYHHRSSLVKQVLAAMVQNCPLD-----ASPNKSCNQPWTTDSVSEVLRSIPRLFFQS 59
Query: 56 TRSIGRQKGFRHRAPLKQ 3
RSIGRQKGFRHR+PLKQ
Sbjct: 60 PRSIGRQKGFRHRSPLKQ 77
>ref|XP_006390093.1| hypothetical protein EUTSA_v10019853mg [Eutrema salsugineum]
gi|557086527|gb|ESQ27379.1| hypothetical protein
EUTSA_v10019853mg [Eutrema salsugineum]
Length = 451
Score = 76.3 bits (186), Expect = 4e-12
Identities = 37/72 (51%), Positives = 52/72 (72%)
Frame = -2
Query: 218 SQKLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIGR 39
S ++++Q++ AM+Q+RP + + V SS W+ V ++LRS+PRFFF S RSIGR
Sbjct: 8 SNRIIDQLITAMIQNRPFDAVLASVTV----SSPWSQQIVSDVLRSIPRFFFISPRSIGR 63
Query: 38 QKGFRHRAPLKQ 3
QKGFRHR+PLKQ
Sbjct: 64 QKGFRHRSPLKQ 75
>ref|XP_004244895.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Solanum lycopersicum]
Length = 426
Score = 75.9 bits (185), Expect = 6e-12
Identities = 37/68 (54%), Positives = 46/68 (67%)
Frame = -2
Query: 206 VNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIGRQKGF 27
++Q MAA++++RP E I S WTV V ++LRS+PRF FQS RSIGRQ GF
Sbjct: 1 MDQAMAAIIRNRPFESSIP--------QSIWTVETVSQVLRSIPRFLFQSPRSIGRQNGF 52
Query: 26 RHRAPLKQ 3
RHR PLKQ
Sbjct: 53 RHRTPLKQ 60
>ref|XP_007019149.1| Pentatricopeptide repeat (PPR) superfamily protein isoform 2
[Theobroma cacao] gi|508724477|gb|EOY16374.1|
Pentatricopeptide repeat (PPR) superfamily protein
isoform 2 [Theobroma cacao]
Length = 438
Score = 74.7 bits (182), Expect = 1e-11
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = -2
Query: 221 SSQKLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIG 42
S +V+QV++ MLQ+RP + + T S+ WT + V +ILRSV +FFFQS RSIG
Sbjct: 10 SHSAIVHQVLSIMLQNRPFDSQLASSTT----SNPWTTDAVSDILRSVSKFFFQSPRSIG 65
Query: 41 RQKGFRHRAPLKQ 3
Q GFRHRAPLKQ
Sbjct: 66 SQTGFRHRAPLKQ 78
>ref|XP_007019148.1| Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma
cacao] gi|508724476|gb|EOY16373.1| Pentatricopeptide
repeat superfamily protein isoform 1 [Theobroma cacao]
Length = 586
Score = 74.7 bits (182), Expect = 1e-11
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = -2
Query: 221 SSQKLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIG 42
S +V+QV++ MLQ+RP + + T S+ WT + V +ILRSV +FFFQS RSIG
Sbjct: 10 SHSAIVHQVLSIMLQNRPFDSQLASSTT----SNPWTTDAVSDILRSVSKFFFQSPRSIG 65
Query: 41 RQKGFRHRAPLKQ 3
Q GFRHRAPLKQ
Sbjct: 66 SQTGFRHRAPLKQ 78
>ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 459
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/70 (51%), Positives = 52/70 (74%)
Frame = -2
Query: 212 KLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIGRQK 33
++++Q++AAM+Q+RP + V + ++ WT V ++LRS+PRFFF S RSIGRQK
Sbjct: 10 RIIDQLIAAMIQNRPFD----AVLASSTVANPWTQQLVSDVLRSIPRFFFISPRSIGRQK 65
Query: 32 GFRHRAPLKQ 3
GFRHR+PLKQ
Sbjct: 66 GFRHRSPLKQ 75
>ref|XP_006302269.1| hypothetical protein CARUB_v10020312mg [Capsella rubella]
gi|482570979|gb|EOA35167.1| hypothetical protein
CARUB_v10020312mg [Capsella rubella]
Length = 438
Score = 73.6 bits (179), Expect = 3e-11
Identities = 36/74 (48%), Positives = 51/74 (68%)
Frame = -2
Query: 224 SSSQKLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSI 45
S ++++Q++AAM+Q+RP + + A W+ V ++LRS+PRFFF S RSI
Sbjct: 4 SQCNRIIDQLIAAMIQNRPFDALLASSTVANP----WSQQLVSDVLRSIPRFFFISPRSI 59
Query: 44 GRQKGFRHRAPLKQ 3
GRQKGFRHR+PLKQ
Sbjct: 60 GRQKGFRHRSPLKQ 73
>ref|XP_004292714.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Fragaria vesca subsp. vesca]
Length = 444
Score = 72.8 bits (177), Expect = 5e-11
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -2
Query: 239 HKHPFSSSQK-LVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFF 63
H P + + LVNQV+ AML+++P DP S+ WT ++V ++L S+P FFF
Sbjct: 4 HAKPLNHNHTPLVNQVLTAMLKNQPF-DP-----NPSPSTQPWTTDSVSQVLTSIPTFFF 57
Query: 62 QSTRSIGRQKGFRHRAPLKQ 3
S RSIGRQ GFRHRAPLKQ
Sbjct: 58 HSPRSIGRQPGFRHRAPLKQ 77
>ref|XP_007227306.1| hypothetical protein PRUPE_ppa016683mg [Prunus persica]
gi|462424242|gb|EMJ28505.1| hypothetical protein
PRUPE_ppa016683mg [Prunus persica]
Length = 449
Score = 72.0 bits (175), Expect = 8e-11
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Frame = -2
Query: 239 HKHPFSSSQ--KLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFF 66
H P S + +VNQV+ AML+++P + AT +S W +V ++L S+PRFF
Sbjct: 3 HSKPLSRNYTPNVVNQVLTAMLKNQPFNSELAASAT---TSQPWISESVSQVLISIPRFF 59
Query: 65 FQSTRSIGRQKGFRHRAPLKQ 3
FQS SIGRQ GFRHRA LKQ
Sbjct: 60 FQSPSSIGRQHGFRHRAQLKQ 80
>gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thaliana]
Length = 410
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = -2
Query: 212 KLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIGRQK 33
++V+Q++ AM+Q+RP + + A WT V ++L S+PRFFF S RSIGRQK
Sbjct: 10 RIVDQLITAMIQNRPFDAVLASSTVAKP----WTQQLVSDVLHSIPRFFFISPRSIGRQK 65
Query: 32 GFRHRAPLKQ 3
GFRHR+PLKQ
Sbjct: 66 GFRHRSPLKQ 75
>ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g77405 gi|91806103|gb|ABE65780.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
gi|332197853|gb|AEE35974.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 458
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = -2
Query: 212 KLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIGRQK 33
++V+Q++ AM+Q+RP + + A WT V ++L S+PRFFF S RSIGRQK
Sbjct: 10 RIVDQLITAMIQNRPFDAVLASSTVAKP----WTQQLVSDVLHSIPRFFFISPRSIGRQK 65
Query: 32 GFRHRAPLKQ 3
GFRHR+PLKQ
Sbjct: 66 GFRHRSPLKQ 75
>ref|XP_006351204.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like [Solanum tuberosum]
Length = 440
Score = 70.5 bits (171), Expect = 2e-10
Identities = 40/95 (42%), Positives = 54/95 (56%)
Frame = -2
Query: 287 LLSRHSLQFPLVSSHLHKHPFSSSQKLVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTV 108
+LS SL P + + +++QVMAA++++R E I WTV
Sbjct: 1 MLSTRSLSSPFIQN-----------LVMDQVMAAIIRNRSFEASIL--------QPIWTV 41
Query: 107 NNVCEILRSVPRFFFQSTRSIGRQKGFRHRAPLKQ 3
V ++LRS+PRF FQS RSIGRQ GFR+R PLKQ
Sbjct: 42 ETVSQVLRSIPRFLFQSPRSIGRQNGFRYRTPLKQ 76
>ref|XP_002520332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540551|gb|EEF42118.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 441
Score = 69.7 bits (169), Expect = 4e-10
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = -2
Query: 209 LVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIGRQKG 30
L+NQV++ M+Q RP + I + ++S + N + ++LRS+PRFFFQSTRS+GRQ
Sbjct: 10 LINQVISLMIQHRPFD----IQLASSTTTSLLSSNLISDVLRSIPRFFFQSTRSVGRQST 65
Query: 29 FRHRAPLKQ 3
RHR+PLKQ
Sbjct: 66 TRHRSPLKQ 74
>ref|XP_006472819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77405-like isoform X1 [Citrus sinensis]
gi|568837618|ref|XP_006472820.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g77405-like isoform X2 [Citrus sinensis]
Length = 451
Score = 68.9 bits (167), Expect = 7e-10
Identities = 33/69 (47%), Positives = 49/69 (71%)
Frame = -2
Query: 209 LVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIGRQKG 30
LV QV+ ML++ P + + A+ + + +T+ +V ++L+S+PRFFFQS RSIGRQ G
Sbjct: 14 LVQQVLPLMLKNVPFD--AKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTG 71
Query: 29 FRHRAPLKQ 3
FRHR PL+Q
Sbjct: 72 FRHRTPLRQ 80
>ref|XP_006434253.1| hypothetical protein CICLE_v10003743mg [Citrus clementina]
gi|557536375|gb|ESR47493.1| hypothetical protein
CICLE_v10003743mg [Citrus clementina]
Length = 451
Score = 68.6 bits (166), Expect = 9e-10
Identities = 33/69 (47%), Positives = 49/69 (71%)
Frame = -2
Query: 209 LVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIGRQKG 30
LV QV+ +L++ P + + A+ + + +T+ +V ++L+S+PRFFFQS RSIGRQ G
Sbjct: 14 LVQQVLPLILKNVPFD--AKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTG 71
Query: 29 FRHRAPLKQ 3
FRHR PLKQ
Sbjct: 72 FRHRTPLKQ 80
>ref|XP_006386364.1| hypothetical protein POPTR_0002s08080g [Populus trichocarpa]
gi|550344529|gb|ERP64161.1| hypothetical protein
POPTR_0002s08080g [Populus trichocarpa]
Length = 448
Score = 67.0 bits (162), Expect = 3e-09
Identities = 33/69 (47%), Positives = 51/69 (73%)
Frame = -2
Query: 209 LVNQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIGRQKG 30
++NQV++ M+Q+RP + T +A++ + + T+++V +ILRS+PRFFF S RSIGRQ
Sbjct: 16 VINQVLSIMIQNRPFD---TKLASSTTNPNLLTIDSVSDILRSIPRFFFLSPRSIGRQNT 72
Query: 29 FRHRAPLKQ 3
HR+PLKQ
Sbjct: 73 AFHRSPLKQ 81
>gb|EYU23868.1| hypothetical protein MIMGU_mgv1a005901mg [Mimulus guttatus]
Length = 465
Score = 66.2 bits (160), Expect = 4e-09
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = -2
Query: 203 NQVMAAMLQDRPLEDPITIVATAYDSSSFWTVNNVCEILRSVPRFFFQSTRSIGRQKGFR 24
NQV+AA++Q+RP + + + WT V ++LRS+P FQS+RSIGRQ FR
Sbjct: 38 NQVVAAIIQNRPFDT----APSPHHHQRIWTSETVIQVLRSIPLHLFQSSRSIGRQNTFR 93
Query: 23 HRAPLKQ 3
HR+PLKQ
Sbjct: 94 HRSPLKQ 100