BLASTX nr result
ID: Cocculus22_contig00003288
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00003288
(1064 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 92 3e-26
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 89 2e-25
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 89 2e-25
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 90 1e-24
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 90 1e-24
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 88 1e-24
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 88 1e-24
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 86 2e-24
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 85 3e-24
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 85 3e-24
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 85 4e-24
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 87 5e-24
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 88 2e-23
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 88 2e-23
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 88 2e-23
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 88 2e-23
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 86 2e-23
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 86 3e-23
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 86 4e-23
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 86 5e-23
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 92.0 bits (227), Expect(2) = 3e-26
Identities = 44/75 (58%), Positives = 54/75 (72%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ + R ML AGL K FWAEAV TACY+ N S I +T +K
Sbjct: 549 HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIK 608
Query: 237 M*TGKPADYSHLHIF 281
+ +G PA+YS L +F
Sbjct: 609 VWSGSPANYSDLRVF 623
Score = 54.7 bits (130), Expect(2) = 3e-26
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGY GVKGY LW P KV++SRNV E M+
Sbjct: 628 YAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVML 679
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 89.4 bits (220), Expect(2) = 2e-25
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ + R +L AGL K FWAEAV TACY+ N S I +T ++
Sbjct: 795 HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 854
Query: 237 M*TGKPADYSHLHIF 281
+ +G PA+YS L +F
Sbjct: 855 VWSGSPANYSDLRVF 869
Score = 54.3 bits (129), Expect(2) = 2e-25
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGY GVKGY LW P KV++SRNV E M+
Sbjct: 874 YAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVML 925
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 89.4 bits (220), Expect(2) = 2e-25
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ + R +L AGL K FWAEAV TACY+ N S I +T ++
Sbjct: 588 HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 647
Query: 237 M*TGKPADYSHLHIF 281
+ +G PA+YS L +F
Sbjct: 648 VWSGSPANYSDLRVF 662
Score = 54.3 bits (129), Expect(2) = 2e-25
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGY GVKGY LW P KV++SRNV E M+
Sbjct: 667 YAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVML 718
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 90.1 bits (222), Expect(2) = 1e-24
Identities = 43/75 (57%), Positives = 53/75 (70%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ + R ML AGL K FWAEAV TACY+ N I +T +K
Sbjct: 573 HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIK 632
Query: 237 M*TGKPADYSHLHIF 281
+ +G PA+YS L +F
Sbjct: 633 VWSGSPANYSDLKVF 647
Score = 51.2 bits (121), Expect(2) = 1e-24
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGY GVKGY LW P KV++SR V E M+
Sbjct: 652 YAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETKKVVISRYVVFHESVML 703
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 90.1 bits (222), Expect(2) = 1e-24
Identities = 43/75 (57%), Positives = 53/75 (70%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ + R ML AGL K FWAEAV TACY+ N I +T +K
Sbjct: 405 HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIK 464
Query: 237 M*TGKPADYSHLHIF 281
+ +G PA+YS L +F
Sbjct: 465 VWSGSPANYSDLKVF 479
Score = 51.2 bits (121), Expect(2) = 1e-24
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGY GVKGY LW P KV++SR V E M+
Sbjct: 484 YAHVDNGKLEPRTIKCIFLGYPSGVKGYKLWCPETKKVVISRYVVFHESVML 535
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 88.2 bits (217), Expect(2) = 1e-24
Identities = 42/75 (56%), Positives = 53/75 (70%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ + R ML A L K FWAEAV TACY+ N S I +T ++
Sbjct: 497 HTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 556
Query: 237 M*TGKPADYSHLHIF 281
+ +G PA+YS L +F
Sbjct: 557 VWSGSPANYSDLRVF 571
Score = 52.8 bits (125), Expect(2) = 1e-24
Identities = 25/52 (48%), Positives = 30/52 (57%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P CI LGY GVKGY LW P KV++SRNV E M+
Sbjct: 576 YAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIML 627
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 87.8 bits (216), Expect(2) = 1e-24
Identities = 44/80 (55%), Positives = 54/80 (67%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ + R ML AGL K FWAEAV TACY+ N S I +T ++
Sbjct: 409 HTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 468
Query: 237 M*TGKPADYSHLHIFDVLCT 296
+ + PA YS L +F CT
Sbjct: 469 VWSSSPAKYSDLRVFS--CT 486
Score = 53.1 bits (126), Expect(2) = 1e-24
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGY GVKGY LW P KV+++RNV E M+
Sbjct: 488 YAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVINRNVVFHESVML 539
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 85.9 bits (211), Expect(2) = 2e-24
Identities = 41/75 (54%), Positives = 53/75 (70%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERM RT++ ++R ML GL K FWAEAV TACY+ N S I +T ++
Sbjct: 623 HTPQQNGVAERMKRTIISKSRCMLPYVGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIE 682
Query: 237 M*TGKPADYSHLHIF 281
+ +G PA+YS L +F
Sbjct: 683 VWSGSPANYSDLRVF 697
Score = 54.3 bits (129), Expect(2) = 2e-24
Identities = 25/52 (48%), Positives = 31/52 (59%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGY GVKGY LW P KV++SRNV E M+
Sbjct: 702 YAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVML 753
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 84.7 bits (208), Expect(2) = 3e-24
Identities = 41/75 (54%), Positives = 52/75 (69%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
+TPQQNGVAERMNRT++ + R ML AGL K FWA AV T CY+ N S I +T +K
Sbjct: 416 YTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIK 475
Query: 237 M*TGKPADYSHLHIF 281
+ +G PA+YS L +F
Sbjct: 476 VWSGFPANYSDLRVF 490
Score = 55.1 bits (131), Expect(2) = 3e-24
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGY+ GVKGY LW P KV++SRNV E M+
Sbjct: 495 YAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPETKKVVISRNVVFHESVML 546
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 84.7 bits (208), Expect(2) = 3e-24
Identities = 41/75 (54%), Positives = 52/75 (69%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
+TPQQNGVAERMNRT++ + R ML AGL K FWA AV T CY+ N S I +T +K
Sbjct: 416 YTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIK 475
Query: 237 M*TGKPADYSHLHIF 281
+ +G PA+YS L +F
Sbjct: 476 VWSGFPANYSDLRVF 490
Score = 55.1 bits (131), Expect(2) = 3e-24
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGY+ GVKGY LW P KV++SRNV E M+
Sbjct: 495 YAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWCPETKKVVISRNVVFHESVML 546
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 84.7 bits (208), Expect(2) = 4e-24
Identities = 40/75 (53%), Positives = 51/75 (68%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQN VAERMNRT++ + R ML AGL K FWAEAV TACY+ N I +T ++
Sbjct: 560 HTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIE 619
Query: 237 M*TGKPADYSHLHIF 281
+ +G P +YS L +F
Sbjct: 620 VWSGSPTNYSDLRVF 634
Score = 54.7 bits (130), Expect(2) = 4e-24
Identities = 25/52 (48%), Positives = 32/52 (61%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGYA GVKGY LW P KV++SRNV E ++
Sbjct: 639 YAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFHESVIL 690
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 87.0 bits (214), Expect(2) = 5e-24
Identities = 41/75 (54%), Positives = 52/75 (69%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGV ERMNRT++ + R ML AGL + FWAEA TACY+ N S I +T ++
Sbjct: 527 HTPQQNGVVERMNRTIISKARCMLSNAGLPRRFWAEAASTACYLINRSPSYAIDKKTPIE 586
Query: 237 M*TGKPADYSHLHIF 281
M +G PA+YS L +F
Sbjct: 587 MWSGSPANYSDLKVF 601
Score = 52.0 bits (123), Expect(2) = 5e-24
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAMI 457
Y + KL+P + CI LGY GVK Y LW P KV++SRNV E M+
Sbjct: 606 YAHVDNGKLEPRAIKCIFLGYPSGVKAYKLWCPETQKVVISRNVIFNETVML 657
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 88.2 bits (217), Expect(2) = 2e-23
Identities = 41/75 (54%), Positives = 54/75 (72%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ R R ML A ++K FWAEA TACY+ N S+ + +T ++
Sbjct: 580 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639
Query: 237 M*TGKPADYSHLHIF 281
+ +G PADYS L +F
Sbjct: 640 VWSGTPADYSQLKVF 654
Score = 48.9 bits (115), Expect(2) = 2e-23
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAM 454
Y + KL+P + C+ LGY GVKGY LW P K +SR+V E M
Sbjct: 659 YAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVM 709
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 88.2 bits (217), Expect(2) = 2e-23
Identities = 41/75 (54%), Positives = 54/75 (72%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ R R ML A ++K FWAEA TACY+ N S+ + +T ++
Sbjct: 582 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 641
Query: 237 M*TGKPADYSHLHIF 281
+ +G PADYS L +F
Sbjct: 642 VWSGTPADYSQLKVF 656
Score = 48.9 bits (115), Expect(2) = 2e-23
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAM 454
Y + KL+P + C+ LGY GVKGY LW P K +SR+V E M
Sbjct: 661 YAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVM 711
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 88.2 bits (217), Expect(2) = 2e-23
Identities = 41/75 (54%), Positives = 54/75 (72%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ R R ML A ++K FWAEA TACY+ N S+ + +T ++
Sbjct: 580 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639
Query: 237 M*TGKPADYSHLHIF 281
+ +G PADYS L +F
Sbjct: 640 VWSGTPADYSQLKVF 654
Score = 48.9 bits (115), Expect(2) = 2e-23
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAM 454
Y + KL+P + C+ LGY GVKGY LW P K +SR+V E M
Sbjct: 659 YAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVM 709
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 88.2 bits (217), Expect(2) = 2e-23
Identities = 41/75 (54%), Positives = 54/75 (72%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
HTPQQNGVAERMNRT++ R R ML A ++K FWAEA TACY+ N S+ + +T ++
Sbjct: 580 HTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIE 639
Query: 237 M*TGKPADYSHLHIF 281
+ +G PADYS L +F
Sbjct: 640 VWSGMPADYSQLKVF 654
Score = 48.9 bits (115), Expect(2) = 2e-23
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAM 454
Y + KL+P + C+ LGY GVKGY LW P K +SR+V E M
Sbjct: 659 YAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVM 709
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 86.3 bits (212), Expect(2) = 2e-23
Identities = 39/75 (52%), Positives = 54/75 (72%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
+TPQQNGVAERMNRT++ + R ML A ++K FWAEA TACY+ N S+ + +T ++
Sbjct: 581 YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIE 640
Query: 237 M*TGKPADYSHLHIF 281
+ +G PADYS L +F
Sbjct: 641 IWSGMPADYSQLRVF 655
Score = 50.4 bits (119), Expect(2) = 2e-23
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAM 454
Y + KL+P + C+ LGY GVKGY LW P +K +SRNV E M
Sbjct: 660 YAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVM 710
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 86.3 bits (212), Expect(2) = 3e-23
Identities = 39/75 (52%), Positives = 54/75 (72%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
+TPQQNGVAERMNRT++ + R ML A ++K FWAEA TACY+ N S+ + +T ++
Sbjct: 509 YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINKSPSIPLNKKTPIE 568
Query: 237 M*TGKPADYSHLHIF 281
+ +G PADYS L +F
Sbjct: 569 VWSGMPADYSQLRVF 583
Score = 50.1 bits (118), Expect(2) = 3e-23
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAM 454
Y + KL+P + C+ LGY GVKGY LW P +K +SR+V E M
Sbjct: 588 YAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRSVVFNESVM 638
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 85.9 bits (211), Expect(2) = 4e-23
Identities = 39/75 (52%), Positives = 53/75 (70%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
+TPQQNGVAERMNRT++ TR ML A ++K FWAE TACY+ N S+ + +T ++
Sbjct: 521 YTPQQNGVAERMNRTIISNTRCMLSNARMNKRFWAEVANTACYLINRSPSIPLNKKTPIE 580
Query: 237 M*TGKPADYSHLHIF 281
+ +G PADYS L +F
Sbjct: 581 VWSGMPADYSQLRVF 595
Score = 50.1 bits (118), Expect(2) = 4e-23
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAM 454
Y + KL+P + C+ LGY GVKGY LW P +K +SR+V E M
Sbjct: 600 YAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPKTNKTFMSRSVVFNESVM 650
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 86.3 bits (212), Expect(2) = 5e-23
Identities = 39/75 (52%), Positives = 54/75 (72%)
Frame = +3
Query: 57 HTPQQNGVAERMNRTLLDRTRAMLRTAGLDKPFWAEAVRTACYVTNWVSSLEIKMETLMK 236
+TPQQNGVAERMNRT++ + R ML A ++K FWAEA TACY+ N S+ + +T ++
Sbjct: 581 YTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIE 640
Query: 237 M*TGKPADYSHLHIF 281
+ +G PADYS L +F
Sbjct: 641 IWSGMPADYSQLRVF 655
Score = 49.3 bits (116), Expect(2) = 5e-23
Identities = 22/51 (43%), Positives = 29/51 (56%)
Frame = +2
Query: 302 YNAQERRKLDPESRMCIILGYADGVKGYHLWGPTIHKVIVSRNVT*KEDAM 454
Y + KL+P + C+ LGY GVKGY LW P +K +SR+V E M
Sbjct: 660 YAHVDNEKLEPRAIKCLFLGYGLGVKGYKLWNPETNKTFMSRSVVFNESVM 710