BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00022170
         (1304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   270   8e-70
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   262   1e-67
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   257   4e-66
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           257   5e-66
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   253   6e-65

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
            predicted protein [Populus trichocarpa]
          Length = 517

 Score =  270 bits (689), Expect = 8e-70
 Identities = 140/389 (35%), Positives = 212/389 (54%), Gaps = 1/389 (0%)
 Frame = -3

Query: 1176 ISHIMSCITRFASWSGLSPNVDKSTVFFGNCRTDFIDWFDQEYGIPHGDLPVRFLGVPLI 997
            +  I + +T+F   SGL PN +KS +F         +      G   G+LP+++LGVPL+
Sbjct: 5    VGMIRTVLTKFQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLL 64

Query: 996  SAQLSFNDCVPLIDKIISRISSWTSILLSLAGRAQLLKAVIFSIQSYWSKHFMLPVAVHK 817
            S++L    C  L+D+I S++  WT   LS AGR QL+ +V+FSIQ YW+  F+LP  V K
Sbjct: 65   SSRLKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIK 124

Query: 816  RLQTIFSRFLWKGDVNLKGGAKICWDNVCLPLEEGGLGLKNTKEWNIAQILSLLCQIISN 637
             ++ I   FLW G      GAK+ WD VCLP +EGGLG+K+ KEWN   +L  +  + ++
Sbjct: 125  NVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCND 184

Query: 636  HT-SLWATWVVKTVLKKQNFWVMNIPTDCSWIWRSILKFRPLAKRFLSFHLGNGEDTSLW 460
               S+W+TW+   +L+ +NFW +  P +CSW W  ILK R LA   + + +G+G  TSLW
Sbjct: 185  SDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLW 244

Query: 459  FDPWWRSSCLASSKYDHIIAQSGLHYDSKVHDIISSGTWTLPGLNNRIHHIHPGLRSWLQ 280
            FD W   S LA S  +  I  SG+  ++KV+ +I +  W  P    +    HP + +   
Sbjct: 245  FDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTP--TTQAIGWHPIIEAIPS 302

Query: 279  NFDYPDFDLTKRDSIFWGDLPLKKTKTWHIWNSIRRRLPEVTWYSLVWHKARILRFAHHE 100
            N    +  + ++D + W D P  +      W  +RR    V W+ +VW K  + R +   
Sbjct: 303  N---SNPKMGQKDELVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLL 359

Query: 99   WLVCHGRLPTFDRLAGFGLQVPRHCLLCV 13
            W+    +L T D+L  FG+  P  C LC+
Sbjct: 360  WMAVQQKLTTQDKLHRFGIHGPNRCSLCL 388


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  262 bits (670), Expect = 1e-67
 Identities = 146/430 (33%), Positives = 222/430 (51%), Gaps = 7/430 (1%)
 Frame = -3

Query: 1269 FKFHWRCKDLKLSHLLYADDVLLFSHGDKQSISHIMSCITRFASWSGLSPNVDKSTVFFG 1090
            F +H +CK + L+HL +ADD+++ S G  +SI  I+     FA WSGL  +++KSTV+  
Sbjct: 687  FGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLA 746

Query: 1089 NCRTDFIDWFDQEYGIPHGDLPVRFLGVPLISAQLSFNDCVPLIDKIISRISSWTSILLS 910
                   +     +    G LPVR+LG+PLI+ +LS  DC+PL++++  RI SWTS  LS
Sbjct: 747  GLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLS 806

Query: 909  LAGRAQLLKAVIFSIQSYWSKHFMLPVAVHKRLQTIFSRFLWKGDVNLKGGAKICWDNVC 730
             AGR  L+ +V++SI ++W   F LP    + L+ + S FLW G       AKI W  VC
Sbjct: 807  YAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVC 866

Query: 729  LPLEEGGLGLKNTKEWNIAQILSLLCQIISNHTSLWATWVVKTVLKKQNFW-VMNIPTDC 553
             P +EGGLGL++ KE N    L L+ +I+S+  SLW  WV + +L+  +FW V    +  
Sbjct: 867  KPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQG 926

Query: 552  SWIWRSILKFRPLAKRFLSFHLGNGEDTSLWFDPWWRSSCLASSKYDHIIAQSGLHYDSK 373
            SWIW+ +LK+R +AK      +GNG+ TS W+D W     L     D  +   G+     
Sbjct: 927  SWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMT 986

Query: 372  VHDIISSGTWTLPGLNNRIHHIHPGLRSWLQNFDYPDFDLTKRDSIFW-GDLPLKKT--- 205
            V +      WT        + ++  +   L+     D      D + W G   + +T   
Sbjct: 987  VEE-----AWTNRRQRRHRNDVYNVIEDALKK--SWDTRTETEDKVLWRGKSDVFRTTFS 1039

Query: 204  --KTWHIWNSIRRRLPEVTWYSLVWHKARILRFAHHEWLVCHGRLPTFDRLAGFGLQVPR 31
               TWH   S   R+P   W+ ++W      +++   WL  HGRLPT DR+  +   +  
Sbjct: 1040 TRDTWHHTRSTSARVP---WHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIAT 1096

Query: 30   HCLLCVGGVE 1
             C+ C G +E
Sbjct: 1097 DCIFCQGTLE 1106


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  257 bits (657), Expect = 4e-66
 Identities = 145/419 (34%), Positives = 211/419 (50%), Gaps = 3/419 (0%)
 Frame = -3

Query: 1263 FHWRCKDLKLSHLLYADDVLLFSHGDKQSISHIMSCITRFASWSGLSPNVDKSTVFFGNC 1084
            +H +  DL +SHL++ADDV++F  G   S+  I   +  FA WSGL  N DKS +F    
Sbjct: 543  YHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLF--QA 600

Query: 1083 RTDFIDWFDQE-YGIPHGDLPVRFLGVPLISAQLSFNDCVPLIDKIISRISSWTSILLSL 907
              D  +      YG P G  P+R+LG+PL+  +L   D  PL++K+ +R+ SW S  LS 
Sbjct: 601  GLDLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSF 660

Query: 906  AGRAQLLKAVIFSIQSYWSKHFMLPVAVHKRLQTIFSRFLWKGDVNLKGGAKICWDNVCL 727
            AGR QL+ +VIF + ++W   F+LP    K+++++ S+FLW G ++ +  +K+ W + CL
Sbjct: 661  AGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCL 720

Query: 726  PLEEGGLGLKNTKEWNIAQILSLLCQIISNHTSLWATWVVKTVLKKQNFWVMNIPTDCSW 547
            P  EGGLG ++  EWN   +L L+  +    TSLWA W     L   +FW +N      W
Sbjct: 721  PKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPW 780

Query: 546  IWRSILKFRPLAKRFLSFHLGNGEDTSLWFDPWWRSSCLASSKYDHIIAQSGLHYDSKVH 367
             W+ +L  RPLA++F+   +GNG   S WFD W     L     D       + + +KV 
Sbjct: 781  TWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVA 840

Query: 366  DIISSGTWTLPGLNNRIHHIHPGLRSWLQNFDYPDFDLTKRDSIFW--GDLPLKKTKTWH 193
            D I    W LP L+  +      + S L +   P   L   DS  W   D+  +      
Sbjct: 841  DAIDGSGWRLP-LSRSL--TADSILSHLASLP-PPSPLMVSDSYSWCVDDVDCQGFSAAK 896

Query: 192  IWNSIRRRLPEVTWYSLVWHKARILRFAHHEWLVCHGRLPTFDRLAGFGLQVPRHCLLC 16
             W  +R R P   W   VW K  + + A + W     RLPT  RL  +GL     C LC
Sbjct: 897  TWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLC 955


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  257 bits (656), Expect = 5e-66
 Identities = 145/419 (34%), Positives = 211/419 (50%), Gaps = 3/419 (0%)
 Frame = -3

Query: 1263 FHWRCKDLKLSHLLYADDVLLFSHGDKQSISHIMSCITRFASWSGLSPNVDKSTVFFGNC 1084
            +H +  DL +SHL++ADDV++F  G   S+  I   +  FA WSGL  N DKS +F    
Sbjct: 543  YHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLF--QA 600

Query: 1083 RTDFIDWFDQE-YGIPHGDLPVRFLGVPLISAQLSFNDCVPLIDKIISRISSWTSILLSL 907
              D  +      YG P G  P+R+LG+PL+  +L   D  PL++K+ +R+ SW S  LS 
Sbjct: 601  GLDLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSF 660

Query: 906  AGRAQLLKAVIFSIQSYWSKHFMLPVAVHKRLQTIFSRFLWKGDVNLKGGAKICWDNVCL 727
            AGR QL+ +VIF + ++W   F+LP    K+++++ S+FLW G ++ +  +K+ W + CL
Sbjct: 661  AGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCL 720

Query: 726  PLEEGGLGLKNTKEWNIAQILSLLCQIISNHTSLWATWVVKTVLKKQNFWVMNIPTDCSW 547
            P  EGGLG ++  EWN   +L L+  +    TSLWA W     L   +FW +N      W
Sbjct: 721  PKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPW 780

Query: 546  IWRSILKFRPLAKRFLSFHLGNGEDTSLWFDPWWRSSCLASSKYDHIIAQSGLHYDSKVH 367
             W+ +L  RPLA++F+   +GNG   S WFD W     L     D       + + +KV 
Sbjct: 781  TWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKVA 840

Query: 366  DIISSGTWTLPGLNNRIHHIHPGLRSWLQNFDYPDFDLTKRDSIFW--GDLPLKKTKTWH 193
            D I    W LP L+  +      + S L +   P   L   DS  W   D+  +      
Sbjct: 841  DAIDGSGWRLP-LSRSL--TADSILSHLASLP-PPSPLMVSDSYSWCVDDVDCQGFSAAK 896

Query: 192  IWNSIRRRLPEVTWYSLVWHKARILRFAHHEWLVCHGRLPTFDRLAGFGLQVPRHCLLC 16
             W  +R R P   W   VW K  + + A + W     RLPT  RL  +GL     C LC
Sbjct: 897  TWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLC 955


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  253 bits (647), Expect = 6e-65
 Identities = 145/421 (34%), Positives = 218/421 (51%), Gaps = 5/421 (1%)
 Frame = -3

Query: 1263 FHWRCKDLKLSHLLYADDVLLFSHGDKQSISHIMSCITRFASWSGLSPNVDKSTVFFGNC 1084
            +H +   L++SHL++ADDV++F  G   S+  I+  +  FA WSGL  N +K+ ++    
Sbjct: 580  YHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGL 639

Query: 1083 RTDFIDWFDQEYGIPHGDLPVRFLGVPLISAQLSFNDCVPLIDKIISRISSWTSILLSLA 904
                 D     YG   G LPVR+LG+PL+S +L+  +  PLI+KI +R +SW   LLS A
Sbjct: 640  SQSESDSM-ASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFA 698

Query: 903  GRAQLLKAVIFSIQSYWSKHFMLPVAVHKRLQTIFSRFLWKGDVNLKGGAKICWDNVCLP 724
            GR QLL +VI  I ++W   F+LP+   K+++++ SRFLW   ++ KG AK+ W  VCLP
Sbjct: 699  GRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLP 758

Query: 723  LEEGGLGLKNTKEWNIAQILSLLCQIISNHTSLWATWVVKTVL-KKQNFWVMNIPTDCSW 547
              EGG+GL+     N    L ++  + SN  SLW  W  +  L K  +FW        SW
Sbjct: 759  KAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSW 818

Query: 546  IWRSILKFRPLAKRFLSFHLGNGEDTSLWFDPWWRSSCLASSKYDHIIAQSGLHYDSKVH 367
             W+ +L+ R +A+RF+  ++GNG D S WFD W     L     +       +H ++K+ 
Sbjct: 819  NWKCLLRLRVVAERFIRCNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKIS 878

Query: 366  DIISSGTWTL--PGLNNRIHHIHPGLRSWLQNFDYPDFDLTKRDSIFW--GDLPLKKTKT 199
            D+ +S  W++  P  +  +      L + L N   P  D    DS  W   +   +    
Sbjct: 879  DVCTSEGWSIADPRSDQAL-----SLHTHLTNISMPS-DAQDLDSYDWVVDNKVCQGFSA 932

Query: 198  WHIWNSIRRRLPEVTWYSLVWHKARILRFAHHEWLVCHGRLPTFDRLAGFGLQVPRHCLL 19
               W+++R     V W   VW K    + A H W     RLPT  RLA +G+Q+   C L
Sbjct: 933  AATWSALRPSSAPVPWARAVWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGL 992

Query: 18   C 16
            C
Sbjct: 993  C 993