BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00013354
         (1181 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris ...   357   2e-96
gb|ACY01928.1| hypothetical protein [Beta vulgaris]                   320   6e-85
gb|AEV42261.1| hypothetical protein [Beta vulgaris]                   278   3e-72
emb|CAN66553.1| hypothetical protein VITISV_018166 [Vitis vinifera]   273   6e-71
gb|AAF13073.1|AC011621_1 putative retroelement pol polyprotein [...   266   6e-69

>gb|AFK13856.1| Ty3/gypsy retrotransposon protein [Beta vulgaris subsp. vulgaris]
          Length = 1631

 Score =  357 bits (917), Expect = 2e-96
 Identities = 171/295 (57%), Positives = 217/295 (73%), Gaps = 3/295 (1%)
 Frame = -3

Query: 1179 GTELKRSTSHHPQTDGQTELVNKVLETYLRCFARGQTKSWSKWLHWAEYSYNTAPHM*TK 1000
            GT LKRS+++HPQTDGQTE+VN+ LETYLRCF  G  +SW+KWL WAE+SYNT+PH  TK
Sbjct: 1326 GTTLKRSSAYHPQTDGQTEIVNRALETYLRCFVGGHPRSWAKWLPWAEFSYNTSPHTSTK 1385

Query: 999  FTPFKVLYGRDPPLISRLGRGHSPVDSIEAMLQDRDAILDDLHFHLLRSQQRMKASADLK 820
             +PFKVLYGRDPP + R  +G + V+S+EAMLQDRDAI+DDL  +L+R+QQRMK  AD  
Sbjct: 1386 MSPFKVLYGRDPPHVVRAPKGQTSVESLEAMLQDRDAIIDDLQVNLVRAQQRMKHYADGS 1445

Query: 819  HRDDQFIVGEKVYVKLQPYRQCSLARHPYEKLAARFYGPFEVL--IGQVAYKINLPDYSK 646
              + +F VG+ V+++LQPYRQ SLA+ P+EKLA RFYGPF VL  IG  AYK+ LP  SK
Sbjct: 1446 RTEVEFQVGDAVFLRLQPYRQRSLAKRPFEKLAPRFYGPFTVLQRIGATAYKLQLPPSSK 1505

Query: 645  IHPVFHISQLKRAIGPMPTSPTVPVQLSSELELLAEPDRMLDLCKAKHGPSDQLEVLIQW 466
            IHPVFH+S LK+ +G  P  PT+P  +  ++EL+ EP+ +LD+ + + G     E LI+W
Sbjct: 1506 IHPVFHVSLLKKVVGNTPVLPTIPPHIDVDMELVVEPEELLDVRQIRQGKQTFTECLIKW 1565

Query: 465  KGLPIFEATWEDAESIQARFPEFHLEDKVNLWGEGNVTN-CPKPDTHTVSERGKR 304
            KGLP FEATWED   I  RFP FHLEDKVN+WG G V +   KP+  T   RG +
Sbjct: 1566 KGLPAFEATWEDMSPIHLRFPSFHLEDKVNVWGAGIVMHQLKKPNLITYKRRGNK 1620


>gb|ACY01928.1| hypothetical protein [Beta vulgaris]
          Length = 1583

 Score =  320 bits (819), Expect = 6e-85
 Identities = 160/299 (53%), Positives = 208/299 (69%), Gaps = 6/299 (2%)
 Frame = -3

Query: 1179 GTELKRSTSHHPQTDGQTELVNKVLETYLRCFARGQTKSWSKWLHWAEYSYNTAPHM*TK 1000
            GT L RST++HPQ+DGQTE+VNK LE YLRCF  G+ K+W++W+ WAEY YNT+ H  + 
Sbjct: 1259 GTLLHRSTAYHPQSDGQTEVVNKSLEAYLRCFCNGRPKAWAQWISWAEYWYNTSTHSSSH 1318

Query: 999  FTPFKVLYGRDPPLISRLGRGHSPVDSIEAMLQDRDAILDDLHFHLLRSQQRMKASADLK 820
            FTPFK++YGRD P + R  +G + + S+E  L DRDA LD+L FHLL +Q  MK   D  
Sbjct: 1319 FTPFKIVYGRDSPPLFRFEKGSTAIFSLEEQLLDRDATLDELKFHLLEAQNSMKIQEDKH 1378

Query: 819  HRDDQFIVGEKVYVKLQPYRQCSLARHPYEKLAARFYGPFEVL--IGQVAYKINLPDYSK 646
             R   F  G  VY+K+QPYR  SLA+   EKLA RFYGPF VL  IGQVAY++ LP  +K
Sbjct: 1379 RRAVHFEPGAMVYLKIQPYRHQSLAKKRNEKLAPRFYGPFSVLKRIGQVAYQLQLPLGAK 1438

Query: 645  IHPVFHISQLKRAIGPMPTSPTVPVQLSSELELLAEPDRMLDLCKAKHGPSDQLEVLIQW 466
            +HPVFHISQLK+A+G + +SPT+P QL+++L L A+P+ +L++      P++  EVLI+W
Sbjct: 1439 LHPVFHISQLKKAVGSLQSSPTIPPQLTNDLVLDAQPESLLNIRSHPQKPAEVTEVLIKW 1498

Query: 465  KGLPIFEATWEDAESIQARFPEFHLEDKVNLWGEGNVTNCP----KPDTHTVSERGKRI 301
              LP FEATWEDA    ARFP+FHLEDKV  W EG++   P     P  HT S R K++
Sbjct: 1499 LNLPAFEATWEDAALFNARFPDFHLEDKVLNW-EGSIAKSPTRIIPPIVHTYSRRRKKL 1556


>gb|AEV42261.1| hypothetical protein [Beta vulgaris]
          Length = 1396

 Score =  278 bits (710), Expect = 3e-72
 Identities = 141/291 (48%), Positives = 188/291 (64%), Gaps = 3/291 (1%)
 Frame = -3

Query: 1176 TELKRSTSHHPQTDGQTELVNKVLETYLRCFARGQTKSWSKWLHWAEYSYNTAPHM*TKF 997
            T L RST++HPQ DGQTE+VNK +E  LRCF +G+  +W+ WL WAEY YNT  H  T F
Sbjct: 1096 TLLHRSTAYHPQLDGQTEVVNKSVEASLRCFIQGKPHTWANWLCWAEYWYNTFKHSATNF 1155

Query: 996  TPFKVLYGRDPPLISRLGRGHSPVDSIEAMLQDRDAILDDLHFHLLRSQQRMKASADLKH 817
            TPF+V+YGR PP + R  R  + V ++E  L  RDA+LD+L  HL+ +Q  M+   D   
Sbjct: 1156 TPFEVVYGRPPPPLYRYKRNSTAVAALEDQLLVRDAVLDELKLHLVTAQNNMRTQEDKHR 1215

Query: 816  RDDQFIVGEKVYVKLQPYRQCSLARHPYEKLAARFYGPFEVL--IGQVAYKINLPDYSKI 643
            R+  F VG+ VY++LQPY+Q SLA+   EKLA R+YGPF VL  IG VAY+++LP +SKI
Sbjct: 1216 REMHFGVGDMVYLRLQPYKQRSLAKRLNEKLAPRYYGPFPVLKRIGTVAYELDLPPHSKI 1275

Query: 642  HPVFHISQLKRAIGPMPTSPTVPVQLSSELELLAEPDRMLDLCKAKHGPSDQLEVLIQWK 463
            HPVFHISQL++A+G  P  P +P  L+++L L + P ++L +       +   E+L+QW 
Sbjct: 1276 HPVFHISQLRKAVGTAPVFPVLPPLLTTDLVLPSSPSQVLGIRPNPLNQAAPAEILVQWS 1335

Query: 462  GLPIFEATWEDAESIQARFPEFHLEDKVNLWGEGNVTNCPKPD-THTVSER 313
             +   EATWE+ + I  RFP FHLEDKV  W  G       P   HT S R
Sbjct: 1336 DMSADEATWENVQDIHERFPTFHLEDKVLNWAGGIARPAQNPPIIHTYSRR 1386


>emb|CAN66553.1| hypothetical protein VITISV_018166 [Vitis vinifera]
          Length = 1448

 Score =  273 bits (698), Expect = 6e-71
 Identities = 137/290 (47%), Positives = 189/290 (65%), Gaps = 2/290 (0%)
 Frame = -3

Query: 1179 GTELKRSTSHHPQTDGQTELVNKVLETYLRCFARGQTKSWSKWLHWAEYSYNTAPHM*TK 1000
            GT L  ST++H QTDGQTE+VN+ +ETYLRCF+  +   WS W+ WAEY YNT  H  T 
Sbjct: 735  GTSLXHSTAYHXQTDGQTEVVNRCVETYLRCFSYNKPGRWSTWISWAEYWYNTTFHSSTN 794

Query: 999  FTPFKVLYGRDPPLISRLGRGHSPVDSIEAMLQDRDAILDDLHFHLLRSQQRMKASADLK 820
             TPF+ +YGRDPP + R G   + V +++ +LQ+RD IL++L  HL  +Q +MK+S D  
Sbjct: 795  TTPFRAVYGRDPPPLIRFGSDSTSVLAVDQLLQERDLILNELKDHLXCAQSKMKSSXDAH 854

Query: 819  HRDDQFIVGEKVYVKLQPYRQCSLARHPYEKLAARFYGPFEVL--IGQVAYKINLPDYSK 646
                QF VG+ VY+KL+PY   SLA+ P EKL+ R++GP++V+  I  VAY++ LP  + 
Sbjct: 855  RXAVQFEVGDFVYIKLRPYXLRSLAKRPNEKLSPRYFGPYKVVXQIXXVAYRLELPXSTT 914

Query: 645  IHPVFHISQLKRAIGPMPTSPTVPVQLSSELELLAEPDRMLDLCKAKHGPSDQLEVLIQW 466
            IH VFH+S LKRA+G       +   L  +LE L EPD++LD+ ++ +     +EVLIQW
Sbjct: 915  IHXVFHVSXLKRALGSADLCQPLSPILVEDLEWLVEPDQVLDIHQSPNNNQLGIEVLIQW 974

Query: 465  KGLPIFEATWEDAESIQARFPEFHLEDKVNLWGEGNVTNCPKPDTHTVSE 316
            KGLP FEA+WE  ++I+  FP+FHLEDKV L       N   PD   + E
Sbjct: 975  KGLPQFEASWESVDTIKEHFPDFHLEDKVLLLMRNLTINLSSPDFEPIRE 1024


>gb|AAF13073.1|AC011621_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1661

 Score =  266 bits (681), Expect = 6e-69
 Identities = 137/273 (50%), Positives = 189/273 (69%), Gaps = 4/273 (1%)
 Frame = -3

Query: 1179 GTELKRSTSHHPQTDGQTELVNKVLETYLRCFARGQTKSWSKWLHWAEYSYNTAPHM*TK 1000
            GT L++ST++HPQTDGQTE+VN+ LE+YLRCFA  +  SW +WL WAEY YNT+ H  TK
Sbjct: 1352 GTGLQKSTAYHPQTDGQTEVVNRCLESYLRCFAGRRPTSWFQWLPWAEYWYNTSYHSATK 1411

Query: 999  FTPFKVLYGRDPPLISRLGRGHSPVDSIEAMLQDRDAILDDLHFHLLRSQQRMKASADLK 820
             TPF+ +YGR+PP++ R G   +   ++E +L+DRD +L +L  +L  +Q +MK +AD  
Sbjct: 1412 TTPFQAVYGREPPVLLRYGDIPTNNANVEELLKDRDGMLVELRENLEIAQAQMKKAADKS 1471

Query: 819  HRDDQFIVGEKVYVKLQPYRQCSLARHPYEKLAARFYGPFEVL--IGQVAYKINLPDYSK 646
             RD  F + E VY+KL+PYRQ S+A    EKL+ R++GPF+VL  IGQVAYK+ LP++S 
Sbjct: 1472 RRDVAFEIDEWVYLKLRPYRQSSVAHRKNEKLSQRYFGPFKVLHRIGQVAYKLQLPEHST 1531

Query: 645  IHPVFHISQLKRAIGPMPTSPTVPVQLSSELELLAEPDRMLDL--CKAKHGPSDQLEVLI 472
            IHPVFH+SQLKRA+ P  T   +P  LS  LE    P+++LD+       GP    EVL+
Sbjct: 1532 IHPVFHVSQLKRAVPPSFTPQELPKILSPTLEWNTGPEKLLDIRQSNTNSGP----EVLV 1587

Query: 471  QWKGLPIFEATWEDAESIQARFPEFHLEDKVNL 373
            QW GL   E+TWE   ++  ++P+F LEDKV+L
Sbjct: 1588 QWSGLSTLESTWEPLLTLVQQYPDFDLEDKVSL 1620