BLASTX nr result
ID: Cnidium21_contig00008258
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00008258
(1031 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002326981.1| predicted protein [Populus trichocarpa] gi|2... 406 e-111
ref|XP_002527264.1| ribonuclease, putative [Ricinus communis] gi... 395 e-108
ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp.... 395 e-107
ref|NP_189170.1| Poly(A)-specific ribonuclease PARN-like protein... 389 e-106
dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana] 389 e-106
>ref|XP_002326981.1| predicted protein [Populus trichocarpa] gi|222835296|gb|EEE73731.1|
predicted protein [Populus trichocarpa]
Length = 626
Score = 406 bits (1044), Expect = e-111
Identities = 204/338 (60%), Positives = 264/338 (78%), Gaps = 8/338 (2%)
Frame = -2
Query: 991 LSHRRFITTNTHTNPISKTTHNP--KWCVKQVSKSNFSETLKNIKDQILQSDYIAVSLKK 818
L RR ++T+ ++KT H P +W +KQV+KSNF++TLK+IK + SD++AVSL+
Sbjct: 7 LLQRRLLSTS-----VTKTHHKPHQQWSIKQVTKSNFADTLKDIKSHVSNSDFVAVSLQN 61
Query: 817 TGSHSAPWHKTLSIDTAETAYFKAKYAAERFQLFQFAVCPFSVRDSKLIAYPYNFHLFPR 638
TGS SAPW + DTA+TAY KAKYAAERFQ+ FAVCP +VR SK+ AYPYNFHLFPR
Sbjct: 62 TGSFSAPWQRVSPFDTADTAYLKAKYAAERFQVLHFAVCPITVRASKVTAYPYNFHLFPR 121
Query: 637 DDFKLGMPCYSFMCQSSYLTSMANEGFDFNACINEGISYLSRAQESIARNKRGNPVVSK- 461
+ K+ MP YSF CQ+S L SMA +GFDFN+CIN+GISYLSR QES A+ + GNP+++K
Sbjct: 122 AELKMEMPSYSFYCQTSSLISMARQGFDFNSCINDGISYLSREQESTAKIQMGNPILAKN 181
Query: 460 LVQSSSAHSVADTLFLGRIQSRVKSWLTACKESNAGSE-----DALIRSLRKLMVGSEEY 296
+ +S+S SVAD++F+ RI+S +K+W ACKE++ E DAL+RSLRKL++G+EEY
Sbjct: 182 VTESTSTLSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEY 241
Query: 295 GSRPCLRIDVCSERHVQLALEMLKEFADDVVPMLIRAKGGGIQAVQVVLTSSKEDKDIFE 116
SRPC+ IDVCSER QL +EML+EFADDVVP++I AKGG +QAV+VVLTSSKEDKD+ +
Sbjct: 242 DSRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQ 301
Query: 115 KEQQYKEEDENKRVRGFREVIDLISASQKPVVAQNSLN 2
+ Q E++ K+VRGFREVIDLISASQKPVV+ SLN
Sbjct: 302 GKLQNDEQELKKKVRGFREVIDLISASQKPVVSHGSLN 339
>ref|XP_002527264.1| ribonuclease, putative [Ricinus communis]
gi|223533357|gb|EEF35108.1| ribonuclease, putative
[Ricinus communis]
Length = 624
Score = 395 bits (1016), Expect = e-108
Identities = 193/333 (57%), Positives = 257/333 (77%), Gaps = 1/333 (0%)
Frame = -2
Query: 997 PWLSHRRFITTNTHTNPISKTTHNPKWCVKQVSKSNFSETLKNIKDQILQSDYIAVSLKK 818
P RR T H + THN +W VKQ++KSNF+++L I I+ SD+I++SLK
Sbjct: 7 PLRLQRRLFCTKIHHHRAH--THN-QWNVKQITKSNFADSLPEINSHIMCSDFISISLKT 63
Query: 817 TGSHSAPWHKTLSIDTAETAYFKAKYAAERFQLFQFAVCPFSVRDSKLIAYPYNFHLFPR 638
TGS S+PWH+ DT + AY K+K+AAE+FQ+ Q AVCPF+V SK+ AYPYNFHLFPR
Sbjct: 64 TGSFSSPWHRVSPFDTPDVAYLKSKHAAEKFQILQLAVCPFTVSASKVTAYPYNFHLFPR 123
Query: 637 DDFKLGMPCYSFMCQSSYLTSMANEGFDFNACINEGISYLSRAQESIARNKRGNPVVSK- 461
D+ GMP YSF C +SYLT M EGFDFNAC+N+GISYLSRAQES AR + NP ++K
Sbjct: 124 DELNSGMPSYSFSCHTSYLTKMVQEGFDFNACVNDGISYLSRAQESAARVRMKNPFLAKD 183
Query: 460 LVQSSSAHSVADTLFLGRIQSRVKSWLTACKESNAGSEDALIRSLRKLMVGSEEYGSRPC 281
+V+S+S VAD++F+ R +SRVK+W AC ++++ +++AL++SLRKL++G EEY SRPC
Sbjct: 184 IVESTSTPGVADSVFVQRTRSRVKNWKNACTDTSS-TDEALVKSLRKLVLGLEEYNSRPC 242
Query: 280 LRIDVCSERHVQLALEMLKEFADDVVPMLIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQY 101
+ IDVCSER V L +EML+EFADD+VP+++ AKGGG QAV+VVLTSSKED+D+ + E Q
Sbjct: 243 INIDVCSERQVHLVIEMLQEFADDLVPLIVPAKGGGTQAVRVVLTSSKEDRDLLQMELQN 302
Query: 100 KEEDENKRVRGFREVIDLISASQKPVVAQNSLN 2
E+++NK++RGFREVIDLIS S+KPVV+ NSLN
Sbjct: 303 LEDEQNKKIRGFREVIDLISGSEKPVVSHNSLN 335
>ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 395 bits (1014), Expect = e-107
Identities = 197/329 (59%), Positives = 258/329 (78%), Gaps = 2/329 (0%)
Frame = -2
Query: 982 RRFITTNTHTNPISKTTHNPKWCVKQVSKSNFSETLKNIKDQILQSDYIAVSLKKTGSHS 803
RRF+++ + T +KT + +W VKQV KSNF TL I+ I SD+IA+SL+ TGS++
Sbjct: 3 RRFLSSISATAGNTKTLNQGRWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYA 62
Query: 802 APWHKTLSIDTAETAYFKAKYAAERFQLFQFAVCPFSVRDSKLIAYPYNFHLFPRDDFKL 623
A WH+ +IDT +T+Y KAKYAAER+Q+ QFA+CPFS+ SKL +PYNFHLFPRD+ K
Sbjct: 63 AAWHRVSAIDTPQTSYLKAKYAAERYQILQFALCPFSLHGSKLTVHPYNFHLFPRDELKC 122
Query: 622 GMPCYSFMCQSSYLTSMANEGFDFNACINEGISYLSRAQESIARNKRGNPVVS-KLVQSS 446
GMP YSF CQ+S LT+MA EGFDFN CI EGISYLSRAQES ++ GNP+++ + SS
Sbjct: 123 GMPSYSFSCQASRLTAMAREGFDFNTCIYEGISYLSRAQESASKFLSGNPILADHITVSS 182
Query: 445 SAHSVADTLFLGRIQSRVKSWLTACKESNAGS-EDALIRSLRKLMVGSEEYGSRPCLRID 269
S +VADT+F+GRI+SRVK+W +C +S + + +D L+ SLR+L++GSE+YGSR CL ID
Sbjct: 183 SPATVADTVFVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTID 242
Query: 268 VCSERHVQLALEMLKEFADDVVPMLIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQYKEED 89
VCSER VQL LEML EF+DDVVP+L+ +K G QAV+ V SSKEDKD+F++E Q E++
Sbjct: 243 VCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELQDLEKE 302
Query: 88 ENKRVRGFREVIDLISASQKPVVAQNSLN 2
EN+RVRGFREV+DLIS+SQKPVV+QN L+
Sbjct: 303 ENRRVRGFREVVDLISSSQKPVVSQNYLS 331
>ref|NP_189170.1| Poly(A)-specific ribonuclease PARN-like protein [Arabidopsis
thaliana] gi|75162449|sp|Q8W4C3.1|PARNL_ARATH RecName:
Full=Poly(A)-specific ribonuclease PARN-like; AltName:
Full=Polyadenylate-specific ribonuclease-like protein
gi|17065176|gb|AAL32742.1| Unknown protein [Arabidopsis
thaliana] gi|30725444|gb|AAP37744.1| At3g25430
[Arabidopsis thaliana] gi|332643489|gb|AEE77010.1|
Poly(A)-specific ribonuclease PARN-like protein
[Arabidopsis thaliana]
Length = 618
Score = 389 bits (999), Expect = e-106
Identities = 195/329 (59%), Positives = 257/329 (78%), Gaps = 2/329 (0%)
Frame = -2
Query: 982 RRFITTNTHTNPISKTTHNPKWCVKQVSKSNFSETLKNIKDQILQSDYIAVSLKKTGSHS 803
RRF+++ + T +KT + +W VKQV KSNF TL I+ I SD+IA+SL+ TGS++
Sbjct: 3 RRFLSSISATAGNTKTLNQGRWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYA 62
Query: 802 APWHKTLSIDTAETAYFKAKYAAERFQLFQFAVCPFSVRDSKLIAYPYNFHLFPRDDFKL 623
A WH+ +IDT +T+Y KAKYAAER+Q+ QFA+CPFS++ SKL +PYNFHLFPRD+ K
Sbjct: 63 AAWHRVSAIDTPQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKC 122
Query: 622 GMPCYSFMCQSSYLTSMANEGFDFNACINEGISYLSRAQESIARNKRGNPVVSKLVQ-SS 446
GMP YSF CQ+S LT+MA EGFDFN CI EGISYLSRAQES ++ NP+++ V SS
Sbjct: 123 GMPSYSFSCQASRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVTVSS 182
Query: 445 SAHSVADTLFLGRIQSRVKSWLTACKESNAGS-EDALIRSLRKLMVGSEEYGSRPCLRID 269
S +VADT+F+GRI+SRVK+W +C +S + + +D L+ SLR+L++GSE+YGSR CL ID
Sbjct: 183 SPATVADTVFVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTID 242
Query: 268 VCSERHVQLALEMLKEFADDVVPMLIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQYKEED 89
VCSER VQL LEML EF+DDVVP+L+ +K G QAV+ V SSKEDKD+F++E + E++
Sbjct: 243 VCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKE 302
Query: 88 ENKRVRGFREVIDLISASQKPVVAQNSLN 2
EN+RVRGFREV+D IS+SQKPVV+QN L+
Sbjct: 303 ENRRVRGFREVVDFISSSQKPVVSQNYLS 331
>dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 389 bits (999), Expect = e-106
Identities = 195/329 (59%), Positives = 257/329 (78%), Gaps = 2/329 (0%)
Frame = -2
Query: 982 RRFITTNTHTNPISKTTHNPKWCVKQVSKSNFSETLKNIKDQILQSDYIAVSLKKTGSHS 803
RRF+++ + T +KT + +W VKQV KSNF TL I+ I SD+IA+SL+ TGS++
Sbjct: 3 RRFLSSISATAGNTKTLNQGRWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYA 62
Query: 802 APWHKTLSIDTAETAYFKAKYAAERFQLFQFAVCPFSVRDSKLIAYPYNFHLFPRDDFKL 623
A WH+ +IDT +T+Y KAKYAAER+Q+ QFA+CPFS++ SKL +PYNFHLFPRD+ K
Sbjct: 63 AAWHRVSAIDTPQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKC 122
Query: 622 GMPCYSFMCQSSYLTSMANEGFDFNACINEGISYLSRAQESIARNKRGNPVVSKLVQ-SS 446
GMP YSF CQ+S LT+MA EGFDFN CI EGISYLSRAQES ++ NP+++ V SS
Sbjct: 123 GMPSYSFSCQASRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVTVSS 182
Query: 445 SAHSVADTLFLGRIQSRVKSWLTACKESNAGS-EDALIRSLRKLMVGSEEYGSRPCLRID 269
S +VADT+F+GRI+SRVK+W +C +S + + +D L+ SLR+L++GSE+YGSR CL ID
Sbjct: 183 SPATVADTVFVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTID 242
Query: 268 VCSERHVQLALEMLKEFADDVVPMLIRAKGGGIQAVQVVLTSSKEDKDIFEKEQQYKEED 89
VCSER VQL LEML EF+DDVVP+L+ +K G QAV+ V SSKEDKD+F++E + E++
Sbjct: 243 VCSERQVQLILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKE 302
Query: 88 ENKRVRGFREVIDLISASQKPVVAQNSLN 2
EN+RVRGFREV+D IS+SQKPVV+QN L+
Sbjct: 303 ENRRVRGFREVVDFISSSQKPVVSQNYLS 331