BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00003678
         (1166 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002509457.1| 30S ribosomal protein S5, putative [Ricinus ...   158   2e-36
ref|XP_003529335.1| PREDICTED: 30S ribosomal protein S5, chlorop...   157   4e-36
ref|XP_004134699.1| PREDICTED: 30S ribosomal protein S5, chlorop...   155   2e-35
ref|XP_002881306.1| ribosomal protein S5 family protein [Arabido...   155   2e-35
ref|NP_180936.1| 30S ribosomal protein S5 [Arabidopsis thaliana]...   155   2e-35

>ref|XP_002509457.1| 30S ribosomal protein S5, putative [Ricinus communis]
           gi|223549356|gb|EEF50844.1| 30S ribosomal protein S5,
           putative [Ricinus communis]
          Length = 309

 Score =  158 bits (400), Expect = 2e-36
 Identities = 78/84 (92%), Positives = 83/84 (98%)
 Frame = +2

Query: 695 HRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVV 874
           HR+DGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQ+GS NALNNARATVV
Sbjct: 226 HRSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSKNALNNARATVV 285

Query: 875 AVQQMRQFSEVARDRGIPMEELWK 946
           AVQ+MRQFS+VAR+RGIPMEELWK
Sbjct: 286 AVQKMRQFSDVARERGIPMEELWK 309



 Score =  118 bits (296), Expect = 2e-24
 Identities = 78/171 (45%), Positives = 90/171 (52%), Gaps = 5/171 (2%)
 Frame = +2

Query: 5   SSLSLYATP-PRFSLFT---NTQFPXXXXXXXXXXXXXXXPIKSXXXXXXXXPTIIDKDT 172
           SSLSL+ T  PRFSL     N  F                PI           +  D DT
Sbjct: 12  SSLSLHTTSTPRFSLLKPIINKPFSSFSPRLTQFLSLSSQPIT------ITTASSSDIDT 65

Query: 173 IFFTNDDPEVVSTFDXXXXXXXXXXXXSFDDGPQETEDEIAAAYEELYGPAYSGVSLLGN 352
            FF N +PE    FD            SFD+ P ETE+EIAAAYE+LYG  YSGVS LGN
Sbjct: 66  TFFDNLNPEDDIVFDPPTPPEDFVPPPSFDEEPMETEEEIAAAYEDLYGAGYSGVSYLGN 125

Query: 353 DIYVMDSKVKKSGPLG-KIKKEKVRDGFDERVIQXXXXXXXXXXXXQLHFR 502
           D+YVMDSKVKK+   G K K+EK+RDGF+ERV+Q            QLHFR
Sbjct: 126 DVYVMDSKVKKTTGFGSKGKREKIRDGFEERVVQVRRVTKVVKGGKQLHFR 176


>ref|XP_003529335.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine
           max]
          Length = 300

 Score =  157 bits (398), Expect = 4e-36
 Identities = 78/84 (92%), Positives = 82/84 (97%)
 Frame = +2

Query: 695 HRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVV 874
           HRADGDYGAAKVMLRPASPGTGVIAGG+VRIVLEMAGVENALGKQLGSNNALNNARATVV
Sbjct: 217 HRADGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSNNALNNARATVV 276

Query: 875 AVQQMRQFSEVARDRGIPMEELWK 946
           AVQ+M+QF EVA +RGIPMEELWK
Sbjct: 277 AVQKMKQFREVAEERGIPMEELWK 300



 Score =  122 bits (305), Expect = 2e-25
 Identities = 66/115 (57%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
 Frame = +2

Query: 161 DKDTIFFTNDDPEVVSTFDXXXXXXXXXXXXSFDDGPQETEDEIAAAYEELYGPAYSGVS 340
           D DT FF N +P+   TF+            SFDDGP ETEDEIAAAYEELYGP YSGVS
Sbjct: 53  DIDTSFFDNINPQDDITFNPPEPPEGFVAPPSFDDGPLETEDEIAAAYEELYGPGYSGVS 112

Query: 341 LLGNDIYVMDSKVKKSGPLGK-IKKEKVRDGFDERVIQXXXXXXXXXXXXQLHFR 502
           +LGND+YVMD+KVKK    G   KKEKVRDGF+ERV+Q            QL FR
Sbjct: 113 VLGNDVYVMDAKVKKETGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFR 167


>ref|XP_004134699.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Cucumis
           sativus] gi|449479289|ref|XP_004155560.1| PREDICTED: 30S
           ribosomal protein S5, chloroplastic-like [Cucumis
           sativus]
          Length = 307

 Score =  155 bits (392), Expect = 2e-35
 Identities = 76/84 (90%), Positives = 83/84 (98%)
 Frame = +2

Query: 695 HRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVV 874
           HR++GDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVV
Sbjct: 224 HRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVV 283

Query: 875 AVQQMRQFSEVARDRGIPMEELWK 946
           AVQ+M+QF +VA++RGIPMEELWK
Sbjct: 284 AVQKMKQFRDVAQERGIPMEELWK 307



 Score =  125 bits (314), Expect = 2e-26
 Identities = 66/115 (57%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
 Frame = +2

Query: 161 DKDTIFFTNDDPEVVSTFDXXXXXXXXXXXXSFDDGPQETEDEIAAAYEELYGPAYSGVS 340
           D DT FF N +P+    +D            SFD+GP ETE+EIAA YEE+YGPAYSGVS
Sbjct: 60  DIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPAYSGVS 119

Query: 341 LLGNDIYVMDSKVKKSGPLG-KIKKEKVRDGFDERVIQXXXXXXXXXXXXQLHFR 502
           +LGNDIYVMDSKVKK+G  G K KK+K RDGFDERV+Q            QLHFR
Sbjct: 120 VLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFR 174


>ref|XP_002881306.1| ribosomal protein S5 family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297327145|gb|EFH57565.1| ribosomal protein S5
           family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 304

 Score =  155 bits (392), Expect = 2e-35
 Identities = 76/84 (90%), Positives = 82/84 (97%)
 Frame = +2

Query: 695 HRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVV 874
           HR++GDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ 
Sbjct: 221 HRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLA 280

Query: 875 AVQQMRQFSEVARDRGIPMEELWK 946
           AVQQMRQF +VA++RGIPMEELWK
Sbjct: 281 AVQQMRQFRDVAQERGIPMEELWK 304



 Score =  110 bits (274), Expect = 9e-22
 Identities = 58/117 (49%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
 Frame = +2

Query: 161 DKDTIFFTNDDPEVVST--FDXXXXXXXXXXXXSFDDGPQETEDEIAAAYEELYGPAYSG 334
           + +T FF ++ PE+ +   FD             FD+G  ETE+EIA A+EELYGPAYSG
Sbjct: 55  ETETFFFEDETPEITANVVFDPPIAPEGFVPPPYFDEGSDETEEEIATAFEELYGPAYSG 114

Query: 335 VSLLGNDIYVMDSKVKKSGPL-GKIKKEKVRDGFDERVIQXXXXXXXXXXXXQLHFR 502
            S+LG DIYVMDSK KKS  + GK+KK+K+RDGF+ERV+Q            QL FR
Sbjct: 115 ESMLGKDIYVMDSKHKKSSGIGGKLKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFR 171


>ref|NP_180936.1| 30S ribosomal protein S5 [Arabidopsis thaliana]
           gi|75101015|sp|P93014.1|RR5_ARATH RecName: Full=30S
           ribosomal protein S5, chloroplastic; Flags: Precursor
           gi|1707008|gb|AAC69132.1| 30S ribosomal protein S5
           [Arabidopsis thaliana] gi|15450886|gb|AAK96714.1| 30S
           ribosomal protein S5 [Arabidopsis thaliana]
           gi|20259882|gb|AAM13288.1| 30S ribosomal protein S5
           [Arabidopsis thaliana] gi|21593322|gb|AAM65271.1| 30S
           ribosomal protein S5 [Arabidopsis thaliana]
           gi|330253794|gb|AEC08888.1| 30S ribosomal protein S5
           [Arabidopsis thaliana]
          Length = 303

 Score =  155 bits (392), Expect = 2e-35
 Identities = 76/84 (90%), Positives = 82/84 (97%)
 Frame = +2

Query: 695 HRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVV 874
           HR++GDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ 
Sbjct: 220 HRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLA 279

Query: 875 AVQQMRQFSEVARDRGIPMEELWK 946
           AVQQMRQF +VA++RGIPMEELWK
Sbjct: 280 AVQQMRQFRDVAQERGIPMEELWK 303



 Score =  111 bits (277), Expect = 4e-22
 Identities = 60/117 (51%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
 Frame = +2

Query: 161 DKDTIFFTNDDPEVVST--FDXXXXXXXXXXXXSFDDGPQETEDEIAAAYEELYGPAYSG 334
           D +TIFF ++ PE+ +   FD             FD+G  ETE+EIA A+EELYGPAYSG
Sbjct: 54  DTETIFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSG 113

Query: 335 VSLLGNDIYVMDSKVKKSGPL-GKIKKEKVRDGFDERVIQXXXXXXXXXXXXQLHFR 502
            S+LG DIYVMDSK KKS  + GK KK+K+RDGF+ERV+Q            QL FR
Sbjct: 114 ESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFR 170