BLASTX nr result
ID: Cinnamomum25_contig00039940
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum25_contig00039940
(273 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 56 1e-12
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 56 1e-12
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 51 3e-10
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 51 3e-10
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 49 3e-10
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 52 6e-10
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 50 6e-10
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 51 1e-09
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 49 1e-09
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 49 1e-09
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 49 2e-09
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 49 2e-09
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 48 2e-09
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 48 2e-09
emb|CAN68837.1| hypothetical protein VITISV_035956 [Vitis vinifera] 54 5e-09
emb|CAN77659.1| hypothetical protein VITISV_030914 [Vitis vinifera] 45 1e-08
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 52 1e-08
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 52 1e-08
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 46 1e-08
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 52 1e-08
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 56.2 bits (134), Expect(2) = 1e-12
Identities = 25/39 (64%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YL+ RSP T I KTP+E+WSG P++YS L+IFGCPA
Sbjct: 940 AAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPA 978
Score = 42.7 bits (99), Expect(2) = 1e-12
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +2
Query: 116 FARVKTDKLDTWAMNCILVGDASGVK*YRLWCT 214
+A V KL+ AM CI +G A+GVK YRLWCT
Sbjct: 979 YAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCT 1011
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 56.2 bits (134), Expect(2) = 1e-12
Identities = 25/39 (64%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YL+ RSP T I KTP+E+WSG P++YS L+IFGCPA
Sbjct: 727 AAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPA 765
Score = 42.7 bits (99), Expect(2) = 1e-12
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +2
Query: 116 FARVKTDKLDTWAMNCILVGDASGVK*YRLWCT 214
+A V KL+ AM CI +G A+GVK YRLWCT
Sbjct: 766 YAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCT 798
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 51.2 bits (121), Expect(2) = 3e-10
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP I KTP E+WSG+PA+YS+LR+FGC A
Sbjct: 835 ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTA 873
Score = 39.7 bits (91), Expect(2) = 3e-10
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G SGVK Y+LWC
Sbjct: 865 DLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWC 905
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 51.2 bits (121), Expect(2) = 3e-10
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP I KTP E+WSG+PA+YS+LR+FGC A
Sbjct: 628 ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTA 666
Score = 39.7 bits (91), Expect(2) = 3e-10
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G SGVK Y+LWC
Sbjct: 658 DLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWC 698
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 49.3 bits (116), Expect(2) = 3e-10
Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP I KTP E+WSG+P +YS+LR+FGC A
Sbjct: 600 ACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTA 638
Score = 41.6 bits (96), Expect(2) = 3e-10
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G ASGVK Y+LWC
Sbjct: 630 DLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWC 670
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 51.6 bits (122), Expect(2) = 6e-10
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP I KTP EMWSG+PA+YS+L++FGC A
Sbjct: 567 ACYLINRSPSYAIDKKTPIEMWSGSPANYSDLKVFGCTA 605
Score = 38.5 bits (88), Expect(2) = 6e-10
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DL++ G +A V KL+ A+ CI +G SGVK Y+LWC
Sbjct: 597 DLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKAYKLWC 637
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549746|gb|ABA92543.1|
retrotransposon protein, putative, Ty1-copia subclass,
expressed [Oryza sativa Japonica Group]
Length = 1170
Score = 50.4 bits (119), Expect(2) = 6e-10
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP I KTP E+WSG+PA+YS+LR+FGC A
Sbjct: 663 ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCIA 701
Score = 39.7 bits (91), Expect(2) = 6e-10
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G SGVK Y+LWC
Sbjct: 693 DLRVFGCIAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWC 733
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 51.2 bits (121), Expect(2) = 1e-09
Identities = 25/39 (64%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP I KTP E+WSG+PA+YS+LR+FGC A
Sbjct: 537 ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTA 575
Score = 38.1 bits (87), Expect(2) = 1e-09
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ + CI +G SGVK Y+LWC
Sbjct: 567 DLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWC 607
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 48.9 bits (115), Expect(2) = 1e-09
Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP I KTP ++WSG+PA+YS+LR+FGC A
Sbjct: 626 ACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIA 664
Score = 40.0 bits (92), Expect(2) = 1e-09
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G SGVK Y+LWC
Sbjct: 656 DLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWC 696
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 48.9 bits (115), Expect(2) = 1e-09
Identities = 24/39 (61%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP I KTP ++WSG+PA+YS+LR+FGC A
Sbjct: 589 ACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIA 627
Score = 40.0 bits (92), Expect(2) = 1e-09
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G SGVK Y+LWC
Sbjct: 619 DLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWC 659
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 48.9 bits (115), Expect(2) = 2e-09
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 YLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
YLI RSP KTP E+WSG+PA+YS+LR+FGC A
Sbjct: 665 YLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTA 701
Score = 39.7 bits (91), Expect(2) = 2e-09
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G SGVK Y+LWC
Sbjct: 693 DLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWC 733
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 48.9 bits (115), Expect(2) = 2e-09
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 YLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
YLI RSP KTP E+WSG+PA+YS+LR+FGC A
Sbjct: 665 YLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTA 701
Score = 39.7 bits (91), Expect(2) = 2e-09
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G SGVK Y+LWC
Sbjct: 693 DLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWC 733
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 47.8 bits (112), Expect(2) = 2e-09
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 YLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
YLI RSP I KTP ++WSG PA+YS+LR+FGC A
Sbjct: 458 YLINRSPSYAIDKKTPIKVWSGFPANYSDLRVFGCTA 494
Score = 40.4 bits (93), Expect(2) = 2e-09
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G +SGVK Y+LWC
Sbjct: 486 DLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWC 526
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 47.8 bits (112), Expect(2) = 2e-09
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 YLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
YLI RSP I KTP ++WSG PA+YS+LR+FGC A
Sbjct: 458 YLINRSPSYAIDKKTPIKVWSGFPANYSDLRVFGCTA 494
Score = 40.4 bits (93), Expect(2) = 2e-09
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G +SGVK Y+LWC
Sbjct: 486 DLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLWC 526
>emb|CAN68837.1| hypothetical protein VITISV_035956 [Vitis vinifera]
Length = 445
Score = 54.3 bits (129), Expect(2) = 5e-09
Identities = 23/34 (67%), Positives = 26/34 (76%)
Frame = +3
Query: 12 LIRSPRTKIGSKTPEEMWSGNPADYSNLRIFGCP 113
LI P T I KTP+E+WSG PA YSNL+IFGCP
Sbjct: 20 LIALPPTAIDKKTPQEVWSGTPASYSNLKIFGCP 53
Score = 32.7 bits (73), Expect(2) = 5e-09
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 116 FARVKTDKLDTWAMNCILVGDASGVK*YRLW 208
+A V KL+ ++ C+ +G SGVK Y+LW
Sbjct: 55 YAHVNNGKLEPRSIKCVFLGCMSGVKRYKLW 85
>emb|CAN77659.1| hypothetical protein VITISV_030914 [Vitis vinifera]
Length = 626
Score = 44.7 bits (104), Expect(2) = 1e-08
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YL+ R P + KTP E W +PADY NL+IFGC A
Sbjct: 219 ACYLVNRCPSAAVXFKTPPEAWLRHPADYGNLKIFGCSA 257
Score = 41.2 bits (95), Expect(2) = 1e-08
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 110 SGFARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
S +A +K DKL A+ CI +G + G+K Y+LWC
Sbjct: 256 SAYAHIKQDKLKPRALKCIFLGYSDGIKGYKLWC 289
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 51.6 bits (122), Expect(2) = 1e-08
Identities = 25/39 (64%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP + KTP E+WSG PADYS LR+FGC A
Sbjct: 621 ACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTA 659
Score = 33.9 bits (76), Expect(2) = 1e-08
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 110 SGFARVKTDKLDTWAMNCILVGDASGVK*YRLW 208
+ +A V KL+ A+ C+ +G SGVK Y+LW
Sbjct: 658 TAYAHVDNGKLEPRAIKCLFLGYGSGVKRYKLW 690
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 51.6 bits (122), Expect(2) = 1e-08
Identities = 25/39 (64%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP + KTP E+WSG PADYS LR+FGC A
Sbjct: 621 ACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTA 659
Score = 33.9 bits (76), Expect(2) = 1e-08
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 110 SGFARVKTDKLDTWAMNCILVGDASGVK*YRLW 208
+ +A V KL+ A+ C+ +G SGVK Y+LW
Sbjct: 658 TAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLW 690
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 45.8 bits (107), Expect(2) = 1e-08
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +3
Query: 27 RTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
R I KTP E+WSG+PA+YS+LR+FGC A
Sbjct: 516 RYTIDKKTPIEVWSGSPANYSDLRVFGCTA 545
Score = 39.7 bits (91), Expect(2) = 1e-08
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 98 DLRLSG---FARVKTDKLDTWAMNCILVGDASGVK*YRLWC 211
DLR+ G +A V KL+ A+ CI +G SGVK Y+LWC
Sbjct: 537 DLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKDYKLWC 577
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 51.6 bits (122), Expect(2) = 1e-08
Identities = 25/39 (64%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 AGYLI-RSPRTKIGSKTPEEMWSGNPADYSNLRIFGCPA 116
A YLI RSP + KTP E+WSG PADYS LR+FGC A
Sbjct: 561 ACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTA 599
Score = 33.9 bits (76), Expect(2) = 1e-08
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 110 SGFARVKTDKLDTWAMNCILVGDASGVK*YRLW 208
+ +A V KL+ A+ C+ +G SGVK Y+LW
Sbjct: 598 TAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLW 630