BLASTX nr result

ID: Cinnamomum25_contig00019144 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00019144
         (250 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010249497.1| PREDICTED: MMS19 nucleotide excision repair ...    69   9e-10
emb|CBI36057.3| unnamed protein product [Vitis vinifera]               59   1e-06
ref|XP_008810490.1| PREDICTED: MMS19 nucleotide excision repair ...    57   4e-06

>ref|XP_010249497.1| PREDICTED: MMS19 nucleotide excision repair protein homolog
           [Nelumbo nucifera] gi|719979495|ref|XP_010249498.1|
           PREDICTED: MMS19 nucleotide excision repair protein
           homolog [Nelumbo nucifera]
          Length = 1160

 Score = 69.3 bits (168), Expect = 9e-10
 Identities = 37/83 (44%), Positives = 50/83 (60%)
 Frame = -2

Query: 249 LGSTLIARGSHDTEKDYFFSGVKGLQTLATFPGSSMPISKAICEKVLTMFVSIITGRCXX 70
           L S+L+     +      +SGVKGL+TLATFPG  +PISK+I E +LT+F+SI+T  C  
Sbjct: 500 LSSSLVTSMKQENCDANIYSGVKGLRTLATFPGWFLPISKSIFENILTVFMSILTAGCEE 559

Query: 69  XXXXXXXXXXLIQIGTFIESSYD 1
                     L+QIGTF E  +D
Sbjct: 560 TLLWKLSLKALVQIGTFTEKFHD 582


>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 35/81 (43%), Positives = 45/81 (55%)
 Frame = -2

Query: 243 STLIARGSHDTEKDYFFSGVKGLQTLATFPGSSMPISKAICEKVLTMFVSIITGRCXXXX 64
           S L A    D  +   +SGVKGLQ LATFPG  +PISK+I E VL  F+SII        
Sbjct: 501 SVLDASTDKDAYEADIYSGVKGLQILATFPGEFLPISKSIFENVLLTFISIIVEDFNKTL 560

Query: 63  XXXXXXXXLIQIGTFIESSYD 1
                   L+QIG+FI+  ++
Sbjct: 561 LWKLALKALVQIGSFIDRFHE 581


>ref|XP_008810490.1| PREDICTED: MMS19 nucleotide excision repair protein homolog
           [Phoenix dactylifera]
          Length = 1153

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
 Frame = -2

Query: 249 LGSTLIARGS-----HDTEKDYFFSGVKGLQTLATFPGSSMPISKAICEKVLTMFVSIIT 85
           LGS L+A GS     ++T  ++    VKGLQ LA FPG  +PIS+ + E +L + VS++T
Sbjct: 500 LGSALVAVGSSELVSNNTGHEHAIYEVKGLQVLAMFPGCYLPISEDVYEYILVILVSMVT 559

Query: 84  GRCXXXXXXXXXXXXLIQIGTFIESSYD 1
            R             LI+IG+FIE  +D
Sbjct: 560 ERFEDTFLWKLSVKALIEIGSFIEKHHD 587


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