BLASTX nr result

ID: Cinnamomum25_contig00017173 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00017173
         (250 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010249497.1| PREDICTED: MMS19 nucleotide excision repair ...    70   4e-10
emb|CBI36057.3| unnamed protein product [Vitis vinifera]               61   3e-07
ref|XP_006385450.1| hypothetical protein POPTR_0003s04720g [Popu...    59   2e-06
ref|XP_011011445.1| PREDICTED: uncharacterized protein LOC105116...    56   8e-06
ref|XP_011011444.1| PREDICTED: uncharacterized protein LOC105116...    56   8e-06
ref|XP_008810490.1| PREDICTED: MMS19 nucleotide excision repair ...    56   8e-06

>ref|XP_010249497.1| PREDICTED: MMS19 nucleotide excision repair protein homolog
           [Nelumbo nucifera] gi|719979495|ref|XP_010249498.1|
           PREDICTED: MMS19 nucleotide excision repair protein
           homolog [Nelumbo nucifera]
          Length = 1160

 Score = 70.5 bits (171), Expect = 4e-10
 Identities = 37/83 (44%), Positives = 49/83 (59%)
 Frame = +2

Query: 2   LGSTLIASGSHDTEKDYFYSGVKGLQTLATFPGSSMPISKAICEKVLTMFVSIITGRCXX 181
           L S+L+ S   +      YSGVKGL+TLATFPG  +PISK+I E +LT+F+SI+T  C  
Sbjct: 500 LSSSLVTSMKQENCDANIYSGVKGLRTLATFPGWFLPISKSIFENILTVFMSILTAGCEE 559

Query: 182 XXXXXXXXXXXIQIGIFIESSYD 250
                      +QIG F E  +D
Sbjct: 560 TLLWKLSLKALVQIGTFTEKFHD 582


>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 36/81 (44%), Positives = 44/81 (54%)
 Frame = +2

Query: 8   STLIASGSHDTEKDYFYSGVKGLQTLATFPGSSMPISKAICEKVLTMFVSIITGRCXXXX 187
           S L AS   D  +   YSGVKGLQ LATFPG  +PISK+I E VL  F+SII        
Sbjct: 501 SVLDASTDKDAYEADIYSGVKGLQILATFPGEFLPISKSIFENVLLTFISIIVEDFNKTL 560

Query: 188 XXXXXXXXXIQIGIFIESSYD 250
                    +QIG FI+  ++
Sbjct: 561 LWKLALKALVQIGSFIDRFHE 581


>ref|XP_006385450.1| hypothetical protein POPTR_0003s04720g [Populus trichocarpa]
           gi|550342418|gb|ERP63247.1| hypothetical protein
           POPTR_0003s04720g [Populus trichocarpa]
          Length = 913

 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 34/79 (43%), Positives = 40/79 (50%)
 Frame = +2

Query: 8   STLIASGSHDTEKDYFYSGVKGLQTLATFPGSSMPISKAICEKVLTMFVSIITGRCXXXX 187
           STL  S          Y GVKGLQ LATFPG  + +SK+ CE +L  FVSIIT       
Sbjct: 269 STLATSTDKPAHDADVYLGVKGLQILATFPGGYLLVSKSTCESILMTFVSIITVDFNKTL 328

Query: 188 XXXXXXXXXIQIGIFIESS 244
                    +QIG+FI  S
Sbjct: 329 LWKLSVKALVQIGLFIHGS 347


>ref|XP_011011445.1| PREDICTED: uncharacterized protein LOC105116012 isoform X2 [Populus
           euphratica]
          Length = 1029

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 33/79 (41%), Positives = 39/79 (49%)
 Frame = +2

Query: 8   STLIASGSHDTEKDYFYSGVKGLQTLATFPGSSMPISKAICEKVLTMFVSIITGRCXXXX 187
           STL  S          Y  VKGLQ LATFPG  + +SK+ CE +L  FVSIIT       
Sbjct: 382 STLATSTDKPAHDADVYLAVKGLQILATFPGGYLLVSKSTCESILMTFVSIITVDFNKTL 441

Query: 188 XXXXXXXXXIQIGIFIESS 244
                    +QIG+FI  S
Sbjct: 442 LWKLSVKALVQIGLFIHGS 460


>ref|XP_011011444.1| PREDICTED: uncharacterized protein LOC105116012 isoform X1 [Populus
           euphratica]
          Length = 1148

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 33/79 (41%), Positives = 39/79 (49%)
 Frame = +2

Query: 8   STLIASGSHDTEKDYFYSGVKGLQTLATFPGSSMPISKAICEKVLTMFVSIITGRCXXXX 187
           STL  S          Y  VKGLQ LATFPG  + +SK+ CE +L  FVSIIT       
Sbjct: 501 STLATSTDKPAHDADVYLAVKGLQILATFPGGYLLVSKSTCESILMTFVSIITVDFNKTL 560

Query: 188 XXXXXXXXXIQIGIFIESS 244
                    +QIG+FI  S
Sbjct: 561 LWKLSVKALVQIGLFIHGS 579


>ref|XP_008810490.1| PREDICTED: MMS19 nucleotide excision repair protein homolog
           [Phoenix dactylifera]
          Length = 1153

 Score = 56.2 bits (134), Expect = 8e-06
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
 Frame = +2

Query: 2   LGSTLIASGS-----HDTEKDYFYSGVKGLQTLATFPGSSMPISKAICEKVLTMFVSIIT 166
           LGS L+A GS     ++T  ++    VKGLQ LA FPG  +PIS+ + E +L + VS++T
Sbjct: 500 LGSALVAVGSSELVSNNTGHEHAIYEVKGLQVLAMFPGCYLPISEDVYEYILVILVSMVT 559

Query: 167 GRCXXXXXXXXXXXXXIQIGIFIESSYD 250
            R              I+IG FIE  +D
Sbjct: 560 ERFEDTFLWKLSVKALIEIGSFIEKHHD 587


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