BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00011414
         (3137 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010278131.1| PREDICTED: chloroplastic group IIA intron sp...  1184   0.0  
ref|XP_010278136.1| PREDICTED: chloroplastic group IIA intron sp...  1182   0.0  
ref|XP_010278134.1| PREDICTED: chloroplastic group IIA intron sp...  1182   0.0  
ref|XP_010278130.1| PREDICTED: chloroplastic group IIA intron sp...  1182   0.0  
ref|XP_008224429.1| PREDICTED: chloroplastic group IIA intron sp...  1037   0.0  
ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prun...  1026   0.0  
ref|XP_008391092.1| PREDICTED: chloroplastic group IIA intron sp...  1026   0.0  
ref|XP_008362021.1| PREDICTED: chloroplastic group IIA intron sp...  1015   0.0  
ref|XP_008802838.1| PREDICTED: chloroplastic group IIA intron sp...  1013   0.0  
ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...  1001   0.0  
emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]   998   0.0  
ref|XP_008362022.1| PREDICTED: chloroplastic group IIA intron sp...   995   0.0  
ref|XP_010917579.1| PREDICTED: chloroplastic group IIA intron sp...   991   0.0  
ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma ca...   982   0.0  
ref|XP_011091130.1| PREDICTED: chloroplastic group IIA intron sp...   981   0.0  
ref|XP_012473005.1| PREDICTED: chloroplastic group IIA intron sp...   976   0.0  
gb|KDO45877.1| hypothetical protein CISIN_1g002316mg [Citrus sin...   974   0.0  
gb|KHG05234.1| Chloroplastic group IIA intron splicing facilitat...   973   0.0  
ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citr...   973   0.0  
ref|XP_009394449.1| PREDICTED: chloroplastic group IIA intron sp...   969   0.0  

>ref|XP_010278131.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X2 [Nelumbo nucifera]
            gi|720071686|ref|XP_010278132.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X2 [Nelumbo nucifera]
            gi|720071690|ref|XP_010278133.1| PREDICTED: chloroplastic
            group IIA intron splicing facilitator CRS1, chloroplastic
            isoform X2 [Nelumbo nucifera]
          Length = 914

 Score = 1184 bits (3064), Expect = 0.0
 Identities = 623/924 (67%), Positives = 726/924 (78%), Gaps = 8/924 (0%)
 Frame = -2

Query: 2926 TCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQK 2747
            +CQ +PT+F+DSFQ+SLSRF G RL  LRY+ S   K+H+FS +   I S   PE+N+QK
Sbjct: 6    SCQFYPTSFLDSFQSSLSRFQGSRLLILRYASSIRFKRHNFSVSHNNIISDSLPEKNQQK 65

Query: 2746 KSNLVAE---NRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNG 2576
             S+   +   +R+    ETPISQ+ SNG F   +W+ KW+ T  QNLP RP+ VLDYRNG
Sbjct: 66   NSSFALKKNNDRRYFAEETPISQSISNGDFSSNSWISKWNETHQQNLPNRPQTVLDYRNG 125

Query: 2575 G--VSSEDDEGSCSTST-SASTMDRIVEKLKRFGYVDDMIERNERVPERGSVEDIFYVEE 2405
            G   SSEDDE + S+S+ S+STMD+IVEKLKRFGYVDDM ER ERVPE+GSVEDIFYVEE
Sbjct: 126  GDVSSSEDDENNTSSSSGSSSTMDKIVEKLKRFGYVDDMNERRERVPEKGSVEDIFYVEE 185

Query: 2404 GMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELT 2225
            GMLPN+RGGF AESPLG+EN   GG G   FPWEKR +  E  RNS R R S+TS+AELT
Sbjct: 186  GMLPNTRGGFSAESPLGIENG-LGGSGEVRFPWEKRSMKEEEERNSFRSR-SRTSLAELT 243

Query: 2224 LPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRL 2045
            LP+SELRRLR+LAV  K + KI GAGVT+A+VDAIHEKWK SE+VRLKCEG   LNMKR+
Sbjct: 244  LPESELRRLRNLAVRTKQKTKIKGAGVTQAVVDAIHEKWKTSEIVRLKCEGASALNMKRM 303

Query: 2044 HEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATR 1865
            HEILERKTGGLVIWRSGTS+SLYRGV YE+ S +  +K+ Q + + +H+SF I T K  R
Sbjct: 304  HEILERKTGGLVIWRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINR 363

Query: 1864 DSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPL 1685
            D  E S +G +Q    S+  T EEKK+  S+PEIKYE E+D+LLD LGPRYTDWPG+GPL
Sbjct: 364  DPKENSSYGAVQEPQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPL 423

Query: 1684 PVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLA 1505
            PVDADLLPGVV  YK PFRILPYGVR T+G KE T+LRRLAR++PPHFALGRSRQHQGLA
Sbjct: 424  PVDADLLPGVVLNYKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLA 483

Query: 1504 MAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSP 1325
            MAM+KLWERSSIA IALKRGVQLTTSERMAEDIKKLTG T+++RNKDFIVFYRGKNFLSP
Sbjct: 484  MAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSP 543

Query: 1324 DVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADARWGKR 1145
            DVTEALLERERLAK LQDEEEQARLRASS +IS  E I + GTAGTLEETLEADARWGK+
Sbjct: 544  DVTEALLERERLAKALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKK 603

Query: 1144 LDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPE 965
            LDDE R KMMRAAE ARH  LVRKL+ KL LAERKLMKAE  L+KVE  L+P ER +DPE
Sbjct: 604  LDDEDRKKMMRAAEVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPE 663

Query: 964  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKN 785
            SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++ A+ F QV+N
Sbjct: 664  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRN 723

Query: 784  VALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRH 605
            +ALALEAESGG+LVSVD+VSKGFAIIV+RGKDY+RP TLRPKNLLTKRKALARSIELQRH
Sbjct: 724  IALALEAESGGILVSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRH 783

Query: 604  EALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLE 425
            EAL KHIS L ++V+ L+ ELDQME VKD+GDEELY KL++AYP+          EAYLE
Sbjct: 784  EALYKHISTLNKRVEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLE 843

Query: 424  TYHSGADNEDHYGNISSGXXXXXXNTSIRSFHP--ETNFPYDHQNPVQGSDDDTSKFCAM 251
            TY S  DN D                +I++FH   ETNFPYD QN    +D +  +  ++
Sbjct: 844  TYDS--DNND-----------ADPKDAIQNFHAEIETNFPYDEQNWAGETDSEALQAYSL 890

Query: 250  GPSEPYSQRSEGVEIKETNL*QLE 179
              +     R+    ++++N   L+
Sbjct: 891  LETNKSCTRTNEARMEDSNFHDLD 914


>ref|XP_010278136.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X4 [Nelumbo nucifera]
          Length = 880

 Score = 1182 bits (3057), Expect = 0.0
 Identities = 619/885 (69%), Positives = 710/885 (80%), Gaps = 8/885 (0%)
 Frame = -2

Query: 2926 TCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQK 2747
            +CQ +PT+F+DSFQ+SLSRF G RL  LRY+ S   K+H+FS +   I S   PE+N+QK
Sbjct: 6    SCQFYPTSFLDSFQSSLSRFQGSRLLILRYASSIRFKRHNFSVSHNNIISDSLPEKNQQK 65

Query: 2746 KSNLVAE---NRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNG 2576
             S+   +   +R+    ETPISQ+ SNG F   +W+ KW+ T  QNLP RP+ VLDYRNG
Sbjct: 66   NSSFALKKNNDRRYFAEETPISQSISNGDFSSNSWISKWNETHQQNLPNRPQTVLDYRNG 125

Query: 2575 G--VSSEDDEGSCSTST-SASTMDRIVEKLKRFGYVDDMIERNERVPERGSVEDIFYVEE 2405
            G   SSEDDE + S+S+ S+STMD+IVEKLKRFGYVDDM ER ERVPE+GSVEDIFYVEE
Sbjct: 126  GDVSSSEDDENNTSSSSGSSSTMDKIVEKLKRFGYVDDMNERRERVPEKGSVEDIFYVEE 185

Query: 2404 GMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELT 2225
            GMLPN+RGGF AESPLG+EN   GG G   FPWEKR +  E  RNS R R S+TS+AELT
Sbjct: 186  GMLPNTRGGFSAESPLGIENG-LGGSGEVRFPWEKRSMKEEEERNSFRSR-SRTSLAELT 243

Query: 2224 LPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRL 2045
            LP+SELRRLR+LAV  K + KI GAGVT+A+VDAIHEKWK SE+VRLKCEG   LNMKR+
Sbjct: 244  LPESELRRLRNLAVRTKQKTKIKGAGVTQAVVDAIHEKWKTSEIVRLKCEGASALNMKRM 303

Query: 2044 HEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATR 1865
            HEILERKTGGLVIWRSGTS+SLYRGV YE+ S +  +K+ Q + + +H+SF I T K  R
Sbjct: 304  HEILERKTGGLVIWRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINR 363

Query: 1864 DSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPL 1685
            D  E S +G +Q    S+  T EEKK+  S+PEIKYE E+D+LLD LGPRYTDWPG+GPL
Sbjct: 364  DPKENSSYGAVQEPQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPL 423

Query: 1684 PVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLA 1505
            PVDADLLPGVV  YK PFRILPYGVR T+G KE T+LRRLAR++PPHFALGRSRQHQGLA
Sbjct: 424  PVDADLLPGVVLNYKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLA 483

Query: 1504 MAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSP 1325
            MAM+KLWERSSIA IALKRGVQLTTSERMAEDIKKLTG T+++RNKDFIVFYRGKNFLSP
Sbjct: 484  MAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSP 543

Query: 1324 DVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADARWGKR 1145
            DVTEALLERERLAK LQDEEEQARLRASS +IS  E I + GTAGTLEETLEADARWGK+
Sbjct: 544  DVTEALLERERLAKALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKK 603

Query: 1144 LDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPE 965
            LDDE R KMMRAAE ARH  LVRKL+ KL LAERKLMKAE  L+KVE  L+P ER +DPE
Sbjct: 604  LDDEDRKKMMRAAEVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPE 663

Query: 964  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKN 785
            SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++ A+ F QV+N
Sbjct: 664  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRN 723

Query: 784  VALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRH 605
            +ALALEAESGG+LVSVD+VSKGFAIIV+RGKDY+RP TLRPKNLLTKRKALARSIELQRH
Sbjct: 724  IALALEAESGGILVSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRH 783

Query: 604  EALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLE 425
            EAL KHIS L ++V+ L+ ELDQME VKD+GDEELY KL++AYP+          EAYLE
Sbjct: 784  EALYKHISTLNKRVEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLE 843

Query: 424  TYHSGADNEDHYGNISSGXXXXXXNTSIRSFHP--ETNFPYDHQN 296
            TY S  DN D                +I++FH   ETNFPYD QN
Sbjct: 844  TYDS--DNND-----------ADPKDAIQNFHAEIETNFPYDEQN 875


>ref|XP_010278134.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X3 [Nelumbo nucifera]
          Length = 896

 Score = 1182 bits (3057), Expect = 0.0
 Identities = 619/885 (69%), Positives = 710/885 (80%), Gaps = 8/885 (0%)
 Frame = -2

Query: 2926 TCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQK 2747
            +CQ +PT+F+DSFQ+SLSRF G RL  LRY+ S   K+H+FS +   I S   PE+N+QK
Sbjct: 6    SCQFYPTSFLDSFQSSLSRFQGSRLLILRYASSIRFKRHNFSVSHNNIISDSLPEKNQQK 65

Query: 2746 KSNLVAE---NRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNG 2576
             S+   +   +R+    ETPISQ+ SNG F   +W+ KW+ T  QNLP RP+ VLDYRNG
Sbjct: 66   NSSFALKKNNDRRYFAEETPISQSISNGDFSSNSWISKWNETHQQNLPNRPQTVLDYRNG 125

Query: 2575 G--VSSEDDEGSCSTST-SASTMDRIVEKLKRFGYVDDMIERNERVPERGSVEDIFYVEE 2405
            G   SSEDDE + S+S+ S+STMD+IVEKLKRFGYVDDM ER ERVPE+GSVEDIFYVEE
Sbjct: 126  GDVSSSEDDENNTSSSSGSSSTMDKIVEKLKRFGYVDDMNERRERVPEKGSVEDIFYVEE 185

Query: 2404 GMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELT 2225
            GMLPN+RGGF AESPLG+EN   GG G   FPWEKR +  E  RNS R R S+TS+AELT
Sbjct: 186  GMLPNTRGGFSAESPLGIENG-LGGSGEVRFPWEKRSMKEEEERNSFRSR-SRTSLAELT 243

Query: 2224 LPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRL 2045
            LP+SELRRLR+LAV  K + KI GAGVT+A+VDAIHEKWK SE+VRLKCEG   LNMKR+
Sbjct: 244  LPESELRRLRNLAVRTKQKTKIKGAGVTQAVVDAIHEKWKTSEIVRLKCEGASALNMKRM 303

Query: 2044 HEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATR 1865
            HEILERKTGGLVIWRSGTS+SLYRGV YE+ S +  +K+ Q + + +H+SF I T K  R
Sbjct: 304  HEILERKTGGLVIWRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINR 363

Query: 1864 DSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPL 1685
            D  E S +G +Q    S+  T EEKK+  S+PEIKYE E+D+LLD LGPRYTDWPG+GPL
Sbjct: 364  DPKENSSYGAVQEPQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPL 423

Query: 1684 PVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLA 1505
            PVDADLLPGVV  YK PFRILPYGVR T+G KE T+LRRLAR++PPHFALGRSRQHQGLA
Sbjct: 424  PVDADLLPGVVLNYKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLA 483

Query: 1504 MAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSP 1325
            MAM+KLWERSSIA IALKRGVQLTTSERMAEDIKKLTG T+++RNKDFIVFYRGKNFLSP
Sbjct: 484  MAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSP 543

Query: 1324 DVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADARWGKR 1145
            DVTEALLERERLAK LQDEEEQARLRASS +IS  E I + GTAGTLEETLEADARWGK+
Sbjct: 544  DVTEALLERERLAKALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKK 603

Query: 1144 LDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPE 965
            LDDE R KMMRAAE ARH  LVRKL+ KL LAERKLMKAE  L+KVE  L+P ER +DPE
Sbjct: 604  LDDEDRKKMMRAAEVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPE 663

Query: 964  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKN 785
            SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++ A+ F QV+N
Sbjct: 664  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRN 723

Query: 784  VALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRH 605
            +ALALEAESGG+LVSVD+VSKGFAIIV+RGKDY+RP TLRPKNLLTKRKALARSIELQRH
Sbjct: 724  IALALEAESGGILVSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRH 783

Query: 604  EALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLE 425
            EAL KHIS L ++V+ L+ ELDQME VKD+GDEELY KL++AYP+          EAYLE
Sbjct: 784  EALYKHISTLNKRVEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLE 843

Query: 424  TYHSGADNEDHYGNISSGXXXXXXNTSIRSFHP--ETNFPYDHQN 296
            TY S  DN D                +I++FH   ETNFPYD QN
Sbjct: 844  TYDS--DNND-----------ADPKDAIQNFHAEIETNFPYDEQN 875


>ref|XP_010278130.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic isoform X1 [Nelumbo nucifera]
          Length = 919

 Score = 1182 bits (3057), Expect = 0.0
 Identities = 619/885 (69%), Positives = 710/885 (80%), Gaps = 8/885 (0%)
 Frame = -2

Query: 2926 TCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQK 2747
            +CQ +PT+F+DSFQ+SLSRF G RL  LRY+ S   K+H+FS +   I S   PE+N+QK
Sbjct: 6    SCQFYPTSFLDSFQSSLSRFQGSRLLILRYASSIRFKRHNFSVSHNNIISDSLPEKNQQK 65

Query: 2746 KSNLVAE---NRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNG 2576
             S+   +   +R+    ETPISQ+ SNG F   +W+ KW+ T  QNLP RP+ VLDYRNG
Sbjct: 66   NSSFALKKNNDRRYFAEETPISQSISNGDFSSNSWISKWNETHQQNLPNRPQTVLDYRNG 125

Query: 2575 G--VSSEDDEGSCSTST-SASTMDRIVEKLKRFGYVDDMIERNERVPERGSVEDIFYVEE 2405
            G   SSEDDE + S+S+ S+STMD+IVEKLKRFGYVDDM ER ERVPE+GSVEDIFYVEE
Sbjct: 126  GDVSSSEDDENNTSSSSGSSSTMDKIVEKLKRFGYVDDMNERRERVPEKGSVEDIFYVEE 185

Query: 2404 GMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELT 2225
            GMLPN+RGGF AESPLG+EN   GG G   FPWEKR +  E  RNS R R S+TS+AELT
Sbjct: 186  GMLPNTRGGFSAESPLGIENG-LGGSGEVRFPWEKRSMKEEEERNSFRSR-SRTSLAELT 243

Query: 2224 LPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRL 2045
            LP+SELRRLR+LAV  K + KI GAGVT+A+VDAIHEKWK SE+VRLKCEG   LNMKR+
Sbjct: 244  LPESELRRLRNLAVRTKQKTKIKGAGVTQAVVDAIHEKWKTSEIVRLKCEGASALNMKRM 303

Query: 2044 HEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATR 1865
            HEILERKTGGLVIWRSGTS+SLYRGV YE+ S +  +K+ Q + + +H+SF I T K  R
Sbjct: 304  HEILERKTGGLVIWRSGTSISLYRGVSYEVASVKDARKRIQNINENSHNSFEIITAKINR 363

Query: 1864 DSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPL 1685
            D  E S +G +Q    S+  T EEKK+  S+PEIKYE E+D+LLD LGPRYTDWPG+GPL
Sbjct: 364  DPKENSSYGAVQEPQTSMVATVEEKKDVESLPEIKYEHEMDELLDSLGPRYTDWPGNGPL 423

Query: 1684 PVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLA 1505
            PVDADLLPGVV  YK PFRILPYGVR T+G KE T+LRRLAR++PPHFALGRSRQHQGLA
Sbjct: 424  PVDADLLPGVVLNYKPPFRILPYGVRSTLGIKETTALRRLARIIPPHFALGRSRQHQGLA 483

Query: 1504 MAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSP 1325
            MAM+KLWERSSIA IALKRGVQLTTSERMAEDIKKLTG T+++RNKDFIVFYRGKNFLSP
Sbjct: 484  MAMIKLWERSSIAKIALKRGVQLTTSERMAEDIKKLTGATILSRNKDFIVFYRGKNFLSP 543

Query: 1324 DVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADARWGKR 1145
            DVTEALLERERLAK LQDEEEQARLRASS +IS  E I + GTAGTLEETLEADARWGK+
Sbjct: 544  DVTEALLERERLAKALQDEEEQARLRASSMVISVSETIVESGTAGTLEETLEADARWGKK 603

Query: 1144 LDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPE 965
            LDDE R KMMRAAE ARH  LVRKL+ KL LAERKLMKAE  L+KVE  L+P ER +DPE
Sbjct: 604  LDDEDRKKMMRAAEVARHGTLVRKLEQKLALAERKLMKAERALSKVEEFLKPTERPADPE 663

Query: 964  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKN 785
            SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++ A+ F QV+N
Sbjct: 664  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKILVKAKTFDQVRN 723

Query: 784  VALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRH 605
            +ALALEAESGG+LVSVD+VSKGFAIIV+RGKDY+RP TLRPKNLLTKRKALARSIELQRH
Sbjct: 724  IALALEAESGGILVSVDRVSKGFAIIVFRGKDYKRPPTLRPKNLLTKRKALARSIELQRH 783

Query: 604  EALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLE 425
            EAL KHIS L ++V+ L+ ELDQME VKD+GDEELY KL++AYP+          EAYLE
Sbjct: 784  EALYKHISTLNKRVEMLRSELDQMEIVKDQGDEELYAKLDAAYPTEDEDSEDEGDEAYLE 843

Query: 424  TYHSGADNEDHYGNISSGXXXXXXNTSIRSFHP--ETNFPYDHQN 296
            TY S  DN D                +I++FH   ETNFPYD QN
Sbjct: 844  TYDS--DNND-----------ADPKDAIQNFHAEIETNFPYDEQN 875


>ref|XP_008224429.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Prunus mume]
          Length = 899

 Score = 1037 bits (2681), Expect = 0.0
 Identities = 555/884 (62%), Positives = 662/884 (74%), Gaps = 13/884 (1%)
 Frame = -2

Query: 2920 QIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQKKS 2741
            Q++PT+  DSFQ+S S+F G  +   R   S P KKH F +   TISS   PE+N  +KS
Sbjct: 8    QLYPTSLFDSFQSSFSKFHGPHIHLFRCGSSIPFKKHTFYATHYTISSTLNPEQNPLRKS 67

Query: 2740 NLVAENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRN------ 2579
            N V +N+       PISQ     +F   +W+DKW+ +   N PK P+AVLDY++      
Sbjct: 68   NFVRKNQ-------PISQYKPKKNFSSSSWIDKWNESHKHNCPKPPRAVLDYQSSESGNL 120

Query: 2578 -GGVSSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERN----ERVPERGSVEDIFY 2414
             G   +E D G    ++S STM++IVEKLK+FGYVDD  E      +RV E+GSVEDIFY
Sbjct: 121  SGSGYAEGDSGG-GRNSSGSTMEKIVEKLKKFGYVDDSNENKGEVRDRVMEKGSVEDIFY 179

Query: 2413 VEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVA 2234
            VEEG LPNSRGGF  ESPLG+EN   GGDG+  FPWEK     +    SVR R+S+TS+A
Sbjct: 180  VEEGKLPNSRGGFSEESPLGIENVF-GGDGKVRFPWEKPKEEEKQEEGSVR-RKSRTSLA 237

Query: 2233 ELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNM 2054
            ELTLP+SELRRL +L    K + +IGG GVT+A+V+ IHE+WK SE+VRLK EGPP LNM
Sbjct: 238  ELTLPESELRRLTNLTFQKKHKTRIGGGGVTQAVVEMIHERWKTSEIVRLKIEGPPALNM 297

Query: 2053 KRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDS--FSIAT 1880
            KR+HEILERKTGGLVIWRSGTS+SLYRGV YE+PS   VK   Q+  K +  S  F    
Sbjct: 298  KRMHEILERKTGGLVIWRSGTSLSLYRGVSYEVPS---VKLNKQIYKKNDTSSAPFPTVA 354

Query: 1879 EKATRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWP 1700
            +K+  D  E + +  ++     LE+T++EK++   + E+KYE E+DKLLD LGPR+ DWP
Sbjct: 355  DKSVGDFAELASYSNVKTPKEKLENTSQEKEDTEQLAEVKYEDEVDKLLDSLGPRFKDWP 414

Query: 1699 GSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQ 1520
            G  PLPVDAD+LPG+VPGY+ PFR+LPYGVR T+G KE TSLRRLARVLPPHFALGRSRQ
Sbjct: 415  GCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLGLKEATSLRRLARVLPPHFALGRSRQ 474

Query: 1519 HQGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGK 1340
             QGLA+AM KLWE+S IA IALKRGVQLTTSERMAEDIK+LTGG +++RNKDF+VFYRGK
Sbjct: 475  LQGLAVAMAKLWEKSLIAKIALKRGVQLTTSERMAEDIKRLTGGVMLSRNKDFLVFYRGK 534

Query: 1339 NFLSPDVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADA 1160
            NFLSPDVTEALLERERLAK LQDEEEQARLRAS+ +I + E  +  GT GTL ETL+ADA
Sbjct: 535  NFLSPDVTEALLERERLAKSLQDEEEQARLRASAMIIPNVEVAQHFGTTGTLGETLDADA 594

Query: 1159 RWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAER 980
            +WGKRLD E   K+MR A+  RHA LVRKL+ KL  AERKLM+AE  L+KVE  L+P+++
Sbjct: 595  KWGKRLDKE---KVMREADILRHAHLVRKLERKLSFAERKLMRAEQALSKVEESLKPSKQ 651

Query: 979  SSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNF 800
             +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++NA+ F
Sbjct: 652  QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKTF 711

Query: 799  SQVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSI 620
             QVKN+ALALEAESGGVLVSVDKVSK FAIIVYRGKDY RP TLRPKNLLTKRKALARSI
Sbjct: 712  EQVKNIALALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSI 771

Query: 619  ELQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXX 440
            ELQR EAL KHIS +Q KV  L+ E++QM+SVKD+GDE LY KL+S+YP+          
Sbjct: 772  ELQRQEALLKHISAVQSKVDTLRCEIEQMDSVKDQGDEALYNKLDSSYPT--DDEDSEEG 829

Query: 439  EAYLETYHSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPY 308
            +AYLETY+S  D ED  GN            SI + H ETNFPY
Sbjct: 830  DAYLETYNSENDGEDE-GNY-----------SICNPHLETNFPY 861


>ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prunus persica]
            gi|462423956|gb|EMJ28219.1| hypothetical protein
            PRUPE_ppa001134mg [Prunus persica]
          Length = 899

 Score = 1026 bits (2654), Expect = 0.0
 Identities = 548/883 (62%), Positives = 659/883 (74%), Gaps = 12/883 (1%)
 Frame = -2

Query: 2920 QIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQKKS 2741
            Q++PT+  DSFQ+S S+F G  +   R   S P KKH F +   TISS   PE+N  +KS
Sbjct: 8    QLYPTSLFDSFQSSFSKFHGPHIHLFRCGSSIPFKKHTFYATHYTISSTLNPEQNPLRKS 67

Query: 2740 NLVAENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNG----- 2576
            N V +N+       PISQ     +F   +W+DKW+ +   N PK P+AVLDY++      
Sbjct: 68   NFVRKNQ-------PISQYKPKKNFSSSSWIDKWNESHKHNRPKPPRAVLDYQSSESGNL 120

Query: 2575 -GVSSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERN----ERVPERGSVEDIFYV 2411
             G    + +G    ++S STM++IVEKLK+FGYVDD  E      + V E+GSVEDIFY+
Sbjct: 121  SGSGYAEGDGGGGRNSSGSTMEKIVEKLKKFGYVDDSNENKGEVRDSVIEKGSVEDIFYI 180

Query: 2410 EEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAE 2231
            EEGMLPNSRGGF  ESPLG+EN   GGDG+  FPWEK     +    SVR R+S+TS+AE
Sbjct: 181  EEGMLPNSRGGFSEESPLGIENVF-GGDGKVRFPWEKPKEEEKQEEGSVR-RKSRTSLAE 238

Query: 2230 LTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMK 2051
            LTLP+SELRRL +L    K + +IGG GVT+A+V+ IHE+WK SE+VRLK EGPP LNMK
Sbjct: 239  LTLPESELRRLTNLTFQKKHKTRIGGGGVTQAVVEMIHERWKTSEIVRLKIEGPPALNMK 298

Query: 2050 RLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIAT--E 1877
            R+HEILERKTGGLVIWRSGTS+SLYRGV YE+PS   VK   ++  K +  S  + T  +
Sbjct: 299  RMHEILERKTGGLVIWRSGTSLSLYRGVSYEVPS---VKLNKRIYKKNDISSAPLPTVAD 355

Query: 1876 KATRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPG 1697
            K+  D  E + +  ++      E+T++EK++   + E+KYE E+DKLLD LGPR+ DWPG
Sbjct: 356  KSVGDFAELASYSNVKTPQEKSENTSQEKEDTEQLAEVKYEDEVDKLLDSLGPRFKDWPG 415

Query: 1696 SGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQH 1517
              PLPVDAD+LPG+VPGY+ PFR+LPYGVR T+G KE TSLRRLARVLPPHFALGRSRQ 
Sbjct: 416  CDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLGLKEATSLRRLARVLPPHFALGRSRQL 475

Query: 1516 QGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKN 1337
            QGLA+AM KLWE+S IA IALKRGVQLTTSERMAEDIK+LTGG +++RNKDF+VFYRGKN
Sbjct: 476  QGLAVAMAKLWEKSLIAKIALKRGVQLTTSERMAEDIKRLTGGVMLSRNKDFLVFYRGKN 535

Query: 1336 FLSPDVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADAR 1157
            FLSPDVTEALLERERLAK LQDEEEQARLRAS+  I + E  +  GTAGTL ETL+ADA+
Sbjct: 536  FLSPDVTEALLERERLAKSLQDEEEQARLRASAMFIPNVEVAQHFGTAGTLGETLDADAK 595

Query: 1156 WGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERS 977
            WGKRLD E   K+MR A+  RHA LVRKL+ KL  AERKLM+AE  L+KVE  L+P+++ 
Sbjct: 596  WGKRLDKE---KVMREADILRHAHLVRKLERKLSFAERKLMRAEQALSKVEESLKPSKQQ 652

Query: 976  SDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFS 797
            +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++NA+ F 
Sbjct: 653  ADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKTFE 712

Query: 796  QVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIE 617
            QVKN+ALALEAESGGVLVSVDKVSK FAIIVYRGKDY RP TLRPKNLLTKRKALARSIE
Sbjct: 713  QVKNIALALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIE 772

Query: 616  LQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXE 437
            LQR EAL KHIS +Q KV  L+ E++QM+SVKD+GDE LY KL+S+YP+          +
Sbjct: 773  LQRQEALLKHISAVQSKVDTLRSEIEQMDSVKDQGDEALYNKLDSSYPT--DDEDSEEVD 830

Query: 436  AYLETYHSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPY 308
            AYLETY+   + ED  GN            SI +   ETNFPY
Sbjct: 831  AYLETYNRENEGEDE-GNY-----------SICNPQLETNFPY 861


>ref|XP_008391092.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Malus domestica]
          Length = 894

 Score = 1026 bits (2652), Expect = 0.0
 Identities = 549/881 (62%), Positives = 655/881 (74%), Gaps = 6/881 (0%)
 Frame = -2

Query: 2920 QIHPTAFIDSFQASLSRFSGYRLQFLRYSH--SNPHKKHHFSSNLRTISSAPFPERNRQK 2747
            Q++PT   DSFQ SLS+F+G  +QF RY H  S P  KH F +    ISS   P++N  +
Sbjct: 8    QLYPTNLFDSFQRSLSKFNGPHIQFFRYGHGSSTPFNKHTFYATHSIISS---PDQNPVR 64

Query: 2746 KSNLVAENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNGGVS 2567
            KSN V  NR        I Q     +    +W+DKW+ +  +N  K P+AVLDY+    S
Sbjct: 65   KSNFVGRNRS-------IYQYKPXRNLCTSSWIDKWNESHKRNRLKPPQAVLDYQ----S 113

Query: 2566 SEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIE----RNERVPERGSVEDIFYVEEGM 2399
            SE    S S +   STM +IVEKL +FGYVDD  E      ERV E+GSVEDIFYVEEGM
Sbjct: 114  SESGNLSGSGNGGGSTMQKIVEKLTKFGYVDDSXEGKGEARERVIEKGSVEDIFYVEEGM 173

Query: 2398 LPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTLP 2219
            LPNSRGGF AESPLG+EN   G DG+  FPWEK     +    SVR R+S+TSVAELTLP
Sbjct: 174  LPNSRGGFSAESPLGIENVF-GSDGKVRFPWEKPAEEEKQDZGSVR-RKSRTSVAELTLP 231

Query: 2218 DSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLHE 2039
            +SELRRLR+L    K + KIGGAGVT+A+VD IHE+WK SE+VRLK EGPP LNMKR+HE
Sbjct: 232  ESELRRLRNLTFQKKHKTKIGGAGVTQAVVDMIHERWKTSEIVRLKVEGPPALNMKRMHE 291

Query: 2038 ILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATRDS 1859
            ILERKTGGLV+WRSGTS+SLYRGV YE+PS Q  K+  +     +  SF    +K+  D 
Sbjct: 292  ILERKTGGLVVWRSGTSLSLYRGVSYEVPSVQLNKRIYKKKEISSSTSFPNVADKSLGDF 351

Query: 1858 IEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPLPV 1679
            +E + +G +       E T+ EKK+ + +PE+KYE E+DKLLD LGPR+ DWPG  PLPV
Sbjct: 352  VELASYGNVNTPQEKPESTSLEKKDTDQLPEVKYEDEVDKLLDSLGPRFKDWPGCDPLPV 411

Query: 1678 DADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLAMA 1499
            DAD+LPG+VPGY+ PFR+LPYGV  ++G +E TSLRRLARVLPPHFALGRSRQ QGLA+A
Sbjct: 412  DADMLPGLVPGYEPPFRVLPYGVXSSLGLQEATSLRRLARVLPPHFALGRSRQLQGLAVA 471

Query: 1498 MVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSPDV 1319
            M KLWERS IA IALKRGVQLTTSERMAEDIK+LTGG L++RNKDF+VFYRGKNFLSP+V
Sbjct: 472  MAKLWERSLIAKIALKRGVQLTTSERMAEDIKRLTGGVLLSRNKDFLVFYRGKNFLSPEV 531

Query: 1318 TEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADARWGKRLD 1139
            TEALLERERLAK LQDEEEQARLRAS+ +I + E+ +  GTAGTL ETL+ADA+WGK +D
Sbjct: 532  TEALLERERLAKSLQDEEEQARLRASAMVIPNVEQAQHFGTAGTLAETLDADAKWGKMMD 591

Query: 1138 DEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPESI 959
            + ++ K+M+ A+  RHA+LVRKL+ KL  AERKLMKAE  L+KVE  L+P+   +DP+SI
Sbjct: 592  NHHKKKVMQEADILRHANLVRKLERKLAFAERKLMKAEQALSKVEECLKPSTLQADPDSI 651

Query: 958  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKNVA 779
            TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++NA++F QVK +A
Sbjct: 652  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKSFEQVKKIA 711

Query: 778  LALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRHEA 599
            LALEAESGGVLVSVDKVSK FAIIVYRGKDY RP TLRPKNLLTKRKALARSIE+QR EA
Sbjct: 712  LALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIEIQRQEA 771

Query: 598  LCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLETY 419
            L KHIS +Q KV  L+ E++QM+ VK+ GDE LY KL+S+YP+          + YLETY
Sbjct: 772  LLKHISXVQSKVDTLRSEIEQMDVVKERGDEVLYNKLDSSYPT-DDDDDSEEEDVYLETY 830

Query: 418  HSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPYDHQN 296
             S  DN +  GN S+              H ETNFPY  QN
Sbjct: 831  -SXEDNGEDEGNYST-----------HDPHLETNFPYHIQN 859


>ref|XP_008362021.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X1 [Malus domestica]
          Length = 882

 Score = 1015 bits (2625), Expect = 0.0
 Identities = 542/881 (61%), Positives = 657/881 (74%), Gaps = 6/881 (0%)
 Frame = -2

Query: 2920 QIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQKKS 2741
            Q++PT+  DSFQ+SLS+F+   +QF RY  S P K H F +    ISS   P+ N  +KS
Sbjct: 8    QLYPTSLFDSFQSSLSKFNSAHIQFFRYGSSIPFKNHTFYTTHCIISSPLNPDPNPMRKS 67

Query: 2740 NLVAENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNGGVSSE 2561
            N V  NR       P+ Q     +    +W++KW+ +   N PK P+AVLDY+    SSE
Sbjct: 68   NFVGRNR-------PVYQCKLKRNLCSSSWINKWNESHKHNRPKPPRAVLDYQ----SSE 116

Query: 2560 DDEGSCSTSTSASTMDRIVEKLKRFGYVDDMI----ERNERVPERGSVEDIFYVEEGMLP 2393
               GS   +   STM++IVEKLK+FGYVDD      E   RV E+GSVEDIFYVEEGMLP
Sbjct: 117  GGNGS--GNGGGSTMEKIVEKLKKFGYVDDSNDSKGEVRGRVIEKGSVEDIFYVEEGMLP 174

Query: 2392 NSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTLPDS 2213
            NSRG F A+SPLGVEN   G DG+  FPWEK     +    SVR R+S+TSVAELTLP+S
Sbjct: 175  NSRGRFSADSPLGVENVF-GSDGKVXFPWEKPAEEEKQEEGSVR-RKSRTSVAELTLPES 232

Query: 2212 ELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLHEIL 2033
            ELRRLR+L    K + +IGGAGVT+A+VD IHE+WK SE+VRLK EGPP LNMKR+HEIL
Sbjct: 233  ELRRLRNLTFQKKHKTRIGGAGVTQAVVDMIHERWKTSEIVRLKVEGPPALNMKRMHEIL 292

Query: 2032 ERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIAT--EKATRDS 1859
            ERKTGGLV+WRSGTS+SLYRGV YE+PS Q  K+   +  K +  S S+ T  +K   D 
Sbjct: 293  ERKTGGLVVWRSGTSLSLYRGVSYEVPSVQLNKR---IYKKNDSSSASLPTVADKXVGDF 349

Query: 1858 IEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPLPV 1679
            +E + +  +      LE T  EKK+   +PE+KYE E+D+LLD LGPR+ DWPG  PLPV
Sbjct: 350  VEIASYXNVNTPQEKLESTFLEKKDTEQLPEVKYEDEVDELLDXLGPRFKDWPGCDPLPV 409

Query: 1678 DADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLAMA 1499
            DAD+LPG+VPGY+ PFR+LPYGVR ++G +E TSLRRLARVLPPHFALGRSRQ QGLA+A
Sbjct: 410  DADMLPGIVPGYEPPFRVLPYGVRSSLGLQEATSLRRLARVLPPHFALGRSRQLQGLAVA 469

Query: 1498 MVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSPDV 1319
            M KLWERS I  IALKRGVQLTTSERMAEDIK+LTGG L++RNKDF+VFYRGKNFLSP+V
Sbjct: 470  MAKLWERSLIXKIALKRGVQLTTSERMAEDIKRLTGGVLLSRNKDFLVFYRGKNFLSPEV 529

Query: 1318 TEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADARWGKRLD 1139
            TEALLERERLAK LQDEEEQARLRAS+ +I + E+ +  GTAGTL ETL+ADA+WGKR+D
Sbjct: 530  TEALLERERLAKSLQDEEEQARLRASAMVIPNVEQAQHFGTAGTLGETLDADAKWGKRMD 589

Query: 1138 DEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPESI 959
            + ++ K+M+ A+  RH++L RKL+ KL  AERKLMKAE  L+KVE  L+P+   +DP+SI
Sbjct: 590  NHHKKKVMQEADILRHSNLXRKLERKLAFAERKLMKAEQALSKVEECLKPSMXQADPDSI 649

Query: 958  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKNVA 779
            TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++NA++F QVK +A
Sbjct: 650  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKSFEQVKKIA 709

Query: 778  LALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRHEA 599
            LALEAESGGVLVSVDKVSK FAIIVYRGKDY RP TLRPKNLLTKRKALARSIE+QR EA
Sbjct: 710  LALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIEIQRQEA 769

Query: 598  LCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLETY 419
            L KHIS +Q KV  L+ E++QM++VK+ GDE LY+KL+S+YP+          + YLETY
Sbjct: 770  LLKHISVVQSKVDTLRSEIEQMDAVKEHGDEVLYDKLDSSYPT-DDDDDSEEEDVYLETY 828

Query: 418  HSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPYDHQN 296
             +  D ED  GN S+              H E+ FP++ QN
Sbjct: 829  SAENDGEDE-GNYST-----------HDPHLESIFPFNIQN 857


>ref|XP_008802838.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Phoenix dactylifera]
          Length = 895

 Score = 1013 bits (2620), Expect = 0.0
 Identities = 550/864 (63%), Positives = 645/864 (74%), Gaps = 10/864 (1%)
 Frame = -2

Query: 2935 VSSTCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSN-PHKKHHFSSN-----LRTISSA 2774
            ++ T Q+HP    DS  ASLSR    RL   R S S  P KK  FS+N          S+
Sbjct: 3    LAPTLQLHPAPIFDSLHASLSRLQSPRLLLFRSSSSTAPSKKLRFSANSIHDQAPDGKSS 62

Query: 2773 PFPERNRQKKSNLVAENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAV 2594
            P+P                 GP   P  + P+        W+  W+ ++    PKRP+A 
Sbjct: 63   PYP-----------------GPGHRP-RRLPAGDLSSRPTWIQSWNQSRLLTSPKRPRAF 104

Query: 2593 LDYRNGGVSSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERNER-VPERGSVEDIF 2417
            LDYR G +SS+DD    S ST +STM++IVEKLK+FGY+D   ER E  +PE+GSVEDIF
Sbjct: 105  LDYREG-ISSDDDVVGTSRSTGSSTMEKIVEKLKKFGYIDVSDERKESPLPEKGSVEDIF 163

Query: 2416 YVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLN--GEAVRNSVRMRRSKT 2243
            Y E+G+LP+SRGG   +    V            FPWEK   N  G+   +S+R RRSKT
Sbjct: 164  YAEDGILPDSRGGLSLDLNKEVR-----------FPWEKPLQNKEGDGGGSSMRKRRSKT 212

Query: 2242 SVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPT 2063
            S+AELTLP+ ELRRLRH+AV +KS+ KI GAGVTK IVD IHE+WK +EVVRLKCEG P 
Sbjct: 213  SLAELTLPEGELRRLRHMAVRIKSKTKIKGAGVTKDIVDLIHEQWKTTEVVRLKCEGAPA 272

Query: 2062 LNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIA 1883
            LNMKR HEILERKTGGLVIWRSGTS+SLYRGVGYE+P  Q  KK+ Q V +   D+F+  
Sbjct: 273  LNMKRTHEILERKTGGLVIWRSGTSISLYRGVGYEIP--QPEKKQYQSVQRSAVDTFNKD 330

Query: 1882 TEKATRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDW 1703
            T   T  SIE      +Q  H  L  + E+KK+     EIKYE EIDKLLDGLGPRYTDW
Sbjct: 331  TYYPTGVSIENGRGNNIQDLHEDLTASLEKKKDTEPDAEIKYEHEIDKLLDGLGPRYTDW 390

Query: 1702 PGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSR 1523
            PGSGPLPVDADLLPGV+PGYK PFRILPYGVR T+G KE T+LRRLAR+LPPHFALGRSR
Sbjct: 391  PGSGPLPVDADLLPGVIPGYKPPFRILPYGVRRTLGLKEGTALRRLARLLPPHFALGRSR 450

Query: 1522 QHQGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRG 1343
            QHQGLA AMVKLWE+SSIA IALKRGVQLTTSERMAE+IKKLTGGT+++ NKD++VFYRG
Sbjct: 451  QHQGLAAAMVKLWEKSSIAKIALKRGVQLTTSERMAEEIKKLTGGTILSSNKDYLVFYRG 510

Query: 1342 KNFLSPDVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEAD 1163
            K+FL+P+VTEALLERE LAK LQDEEEQARLRASSS++S+FE   + GTAGTL ETLEAD
Sbjct: 511  KDFLAPEVTEALLERETLAKTLQDEEEQARLRASSSVVSNFEIADEPGTAGTLGETLEAD 570

Query: 1162 ARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAE 983
            ARWG RLD+++  KMMRAAE ARHADLVRKL+ +L LAER+LMKAE  LAKVE  L+PAE
Sbjct: 571  ARWGNRLDEDHMEKMMRAAEMARHADLVRKLERRLSLAERRLMKAEKALAKVEESLKPAE 630

Query: 982  RSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARN 803
             + DPESIT+EERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVKVI+  + 
Sbjct: 631  HTVDPESITEEERFMFRKLGLRMKAFLLLGRRGVFAGTVENMHLHWKYRELVKVIVKTKT 690

Query: 802  FSQVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARS 623
            F Q K +AL+LE+ESGGVLVSVDKVSKGFAIIVYRGKDY+RP TLRPKNLLTKRKALARS
Sbjct: 691  FEQAKYIALSLESESGGVLVSVDKVSKGFAIIVYRGKDYERPSTLRPKNLLTKRKALARS 750

Query: 622  IELQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXX 443
            IELQRHEAL +HISNLQ++V+ L+ EL QM++VKD+GDEELY KL+SAY +         
Sbjct: 751  IELQRHEALSRHISNLQKRVEQLRSELVQMDNVKDQGDEELYTKLDSAYSTEDEDTEDDD 810

Query: 442  XEAYLETYHSG-ADNEDHYGNISS 374
             EAYL T+++    + D YG + +
Sbjct: 811  DEAYLHTFNTAVVIDGDEYGRVEN 834


>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Vitis vinifera]
            gi|297737163|emb|CBI26364.3| unnamed protein product
            [Vitis vinifera]
          Length = 902

 Score = 1001 bits (2588), Expect = 0.0
 Identities = 549/897 (61%), Positives = 658/897 (73%), Gaps = 13/897 (1%)
 Frame = -2

Query: 2920 QIHPT--AFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQK 2747
            Q +PT  +F+DSF ++       RLQF RY  SN  + H       TI+S      N Q+
Sbjct: 8    QFYPTTTSFLDSFHST-------RLQFFRYGSSNRFRTHSSYVARNTIASN---STNPQR 57

Query: 2746 KSNLVAENRKNGPLETPISQTPSNG-SFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNGGV 2570
            KSN+V  N       TP+SQ  S G S   GNW+DKW+G   ++ PK  + V++YRN   
Sbjct: 58   KSNIVFTN-------TPVSQYDSGGVSSSGGNWIDKWNGPHQKSHPKESRPVMNYRNSET 110

Query: 2569 SSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERNERVPER----GSVEDIFYVEEG 2402
             S  D GS       STM++IVEKLK+FGY+DD+ E  E V ER    GS+EDIFY+EEG
Sbjct: 111  VSRSDGGS----GGGSTMEKIVEKLKKFGYMDDVKETKENVQERIIEKGSIEDIFYIEEG 166

Query: 2401 MLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTL 2222
            +LPN +GGF  +SPLGVEN  +G +G   FPWE+  +   +VR      +S+TS+AELTL
Sbjct: 167  ILPNPQGGFSLDSPLGVENKGDG-NGEVRFPWERPKVEEGSVRI-----KSRTSLAELTL 220

Query: 2221 PDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLH 2042
            P+SELRRLR+L +  K++ KIGG GVT+A+VD I EKWK SE+V+LKCEG   LNM+R+H
Sbjct: 221  PESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIH 280

Query: 2041 EILERKTGGLVIWRSGTSVSLYRGVGYELPSA--QSVKKKSQLVPKK----NHDSFSIAT 1880
            EILERKTGGLVIWRSGTSVSLYRGV YE+P    + V KK++           +SF+I++
Sbjct: 281  EILERKTGGLVIWRSGTSVSLYRGVSYEVPVQLNKRVYKKNETSHSSFSSITPNSFAISS 340

Query: 1879 EKATRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWP 1700
             K + ++     +  + A+ A+L  T  E K+  S  E+KYE EIDKLLDGLGPRYTDWP
Sbjct: 341  NKTSGNAPAVGSNQNVHASQATLNITDGENKDTES--EVKYEDEIDKLLDGLGPRYTDWP 398

Query: 1699 GSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQ 1520
            G  PLP+DADLLPG + GY+ PFRILPYGVR ++G KE T+LRRLARVLPPHFALGRSRQ
Sbjct: 399  GCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRLARVLPPHFALGRSRQ 458

Query: 1519 HQGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGK 1340
             +GLAMAM+KLWERSSIA +ALKRGVQLTTSERMAEDIKKLTGG L++RNKDF+VFYRGK
Sbjct: 459  LEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDFLVFYRGK 518

Query: 1339 NFLSPDVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADA 1160
            NFLS DVTEALLERERLAK LQDEEEQARLRAS+ +       +Q+G+AGTL ETLEADA
Sbjct: 519  NFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGITEQVGSAGTLGETLEADA 578

Query: 1159 RWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAER 980
            RWGKRLDD  + KM++ AE ARHA+LVRKL+ +L LAERKLMKAE+ L+KVE  L+PA R
Sbjct: 579  RWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEEFLKPANR 638

Query: 979  SSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNF 800
             +DPESITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVK+I+ A+ F
Sbjct: 639  PADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTF 698

Query: 799  SQVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSI 620
             QVK  ALALE+ESGGVLVSVDKVSKGFAI+V+RGKDYQRP TLRPKNLLTKRKALARSI
Sbjct: 699  DQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSI 758

Query: 619  ELQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXX 440
            ELQR EAL  HIS LQ+ V+ L+ E++QM+ VKD GDEELY+KL+SAY +          
Sbjct: 759  ELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEELYDKLDSAYATEDEHTEEEGD 818

Query: 439  EAYLETYHSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPYDHQNPVQGSDDDT 269
            EAYLETY    D E    N            SI + H ETNFPYD    +QG + +T
Sbjct: 819  EAYLETYADENDGEHESDN------------SIHNHHIETNFPYD----IQGEEFET 859


>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score =  998 bits (2580), Expect = 0.0
 Identities = 546/888 (61%), Positives = 653/888 (73%), Gaps = 13/888 (1%)
 Frame = -2

Query: 2920 QIHPT--AFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQK 2747
            Q +PT  +F+DSF ++       RLQF RY  SN  + H       TI+S      N Q+
Sbjct: 8    QFYPTTTSFLDSFHST-------RLQFFRYGSSNRFRTHSSYVTRNTIASN---STNPQR 57

Query: 2746 KSNLVAENRKNGPLETPISQTPSNG-SFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNGGV 2570
            KSN+V  N       TP+SQ  S G S   GNW+DKW+G   ++ PK  + V++YRN   
Sbjct: 58   KSNIVFTN-------TPVSQYDSGGVSSSGGNWIDKWNGPHQKSHPKEXRPVMNYRNSET 110

Query: 2569 SSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERNERVPER----GSVEDIFYVEEG 2402
             S  D GS       STM++IVEKLK+FGY+DD+ E  E V ER    GS+EDIFY+EEG
Sbjct: 111  VSRSDGGS----GGGSTMEKIVEKLKKFGYMDDVKETKENVQERIIEKGSIEDIFYIEEG 166

Query: 2401 MLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTL 2222
            +LPN +GGF  +SPLGVEN  +G +G   FPWE+  +   +VR      +S+TS+AELTL
Sbjct: 167  ILPNPQGGFSLDSPLGVENKGDG-NGEVRFPWERPKVEEGSVRI-----KSRTSLAELTL 220

Query: 2221 PDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLH 2042
            P+SELRRLR+L +  K++ KIGG GVT+A+VD I EKWK SE+V+LKCEG   LNM+R+H
Sbjct: 221  PESELRRLRNLTMRTKNKTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIH 280

Query: 2041 EILERKTGGLVIWRSGTSVSLYRGVGYELPSA--QSVKKKSQLVPKK----NHDSFSIAT 1880
            EILERKTGGLVIWRSGTSVSLYRGV YE+P    + V KK++           +SF+I++
Sbjct: 281  EILERKTGGLVIWRSGTSVSLYRGVSYEVPVQLNKRVYKKNETSHSSFSSITPNSFAISS 340

Query: 1879 EKATRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWP 1700
             K + ++     +  + A+ A+L  T  E K+  S  E+KYE EIDKLLDGLGPRYTDWP
Sbjct: 341  NKTSGNAPAVGSNQNVHASQATLXITDGENKDTES--EVKYEDEIDKLLDGLGPRYTDWP 398

Query: 1699 GSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQ 1520
               PLP+DADLLPG + GY+ PFRILPYGVR ++G KE T+LRRLARVLPPHFALGRSRQ
Sbjct: 399  XCDPLPIDADLLPGKIHGYQPPFRILPYGVRSSLGLKEATALRRLARVLPPHFALGRSRQ 458

Query: 1519 HQGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGK 1340
             +GLAMAM+KLWERSSIA +ALKRGVQLTTSERMAEDIKKLTGG L++RNKDF+VFYRGK
Sbjct: 459  LEGLAMAMIKLWERSSIAKVALKRGVQLTTSERMAEDIKKLTGGVLLSRNKDFLVFYRGK 518

Query: 1339 NFLSPDVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADA 1160
            NFLS DVTEALLERERLAK LQDEEEQARLRAS+ +       +Q+G+AGTL ETLEADA
Sbjct: 519  NFLSSDVTEALLERERLAKALQDEEEQARLRASTLITPTVGITEQVGSAGTLGETLEADA 578

Query: 1159 RWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAER 980
            RWGKRLDD  + KM++ AE ARHA+LVRKL+ +L LAERKLMKAE+ L+KVE  L+PA R
Sbjct: 579  RWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEEFLKPANR 638

Query: 979  SSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNF 800
             +DPESITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVK+I+ A+ F
Sbjct: 639  PADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTF 698

Query: 799  SQVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSI 620
             QVK  ALALE+ESGGVLVSVDKVSKGFAI+V+RGKDYQRP TLRPKNLLTKRKALARSI
Sbjct: 699  DQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSI 758

Query: 619  ELQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXX 440
            ELQR EAL  HIS LQ+ V+ L+ E++QM+ VKD GDEELY+KL+SAY +          
Sbjct: 759  ELQRREALYNHISALQRNVEKLRSEIEQMDIVKDHGDEELYDKLDSAYATEDEHTEEEGD 818

Query: 439  EAYLETYHSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPYDHQN 296
            EAYLETY    D E    N            SI + H ETNFPYD Q+
Sbjct: 819  EAYLETYADENDGEHESDN------------SIHNHHIETNFPYDIQD 854


>ref|XP_008362022.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like isoform X2 [Malus domestica]
          Length = 864

 Score =  995 bits (2573), Expect = 0.0
 Identities = 536/881 (60%), Positives = 650/881 (73%), Gaps = 6/881 (0%)
 Frame = -2

Query: 2920 QIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQKKS 2741
            Q++PT+  DSFQ+SLS+F+   +QF RY  S P K H F +    ISS   P+ N  +  
Sbjct: 8    QLYPTSLFDSFQSSLSKFNSAHIQFFRYGSSIPFKNHTFYTTHCIISSPLNPDPNPMR-- 65

Query: 2740 NLVAENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNGGVSSE 2561
            NL + +                       W++KW+ +   N PK P+AVLDY+    SSE
Sbjct: 66   NLCSSS-----------------------WINKWNESHKHNRPKPPRAVLDYQ----SSE 98

Query: 2560 DDEGSCSTSTSASTMDRIVEKLKRFGYVDDMI----ERNERVPERGSVEDIFYVEEGMLP 2393
               GS   +   STM++IVEKLK+FGYVDD      E   RV E+GSVEDIFYVEEGMLP
Sbjct: 99   GGNGS--GNGGGSTMEKIVEKLKKFGYVDDSNDSKGEVRGRVIEKGSVEDIFYVEEGMLP 156

Query: 2392 NSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTLPDS 2213
            NSRG F A+SPLGVEN   G DG+  FPWEK     +    SVR R+S+TSVAELTLP+S
Sbjct: 157  NSRGRFSADSPLGVENVF-GSDGKVXFPWEKPAEEEKQEEGSVR-RKSRTSVAELTLPES 214

Query: 2212 ELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLHEIL 2033
            ELRRLR+L    K + +IGGAGVT+A+VD IHE+WK SE+VRLK EGPP LNMKR+HEIL
Sbjct: 215  ELRRLRNLTFQKKHKTRIGGAGVTQAVVDMIHERWKTSEIVRLKVEGPPALNMKRMHEIL 274

Query: 2032 ERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIAT--EKATRDS 1859
            ERKTGGLV+WRSGTS+SLYRGV YE+PS Q  K+   +  K +  S S+ T  +K   D 
Sbjct: 275  ERKTGGLVVWRSGTSLSLYRGVSYEVPSVQLNKR---IYKKNDSSSASLPTVADKXVGDF 331

Query: 1858 IEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPLPV 1679
            +E + +  +      LE T  EKK+   +PE+KYE E+D+LLD LGPR+ DWPG  PLPV
Sbjct: 332  VEIASYXNVNTPQEKLESTFLEKKDTEQLPEVKYEDEVDELLDXLGPRFKDWPGCDPLPV 391

Query: 1678 DADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLAMA 1499
            DAD+LPG+VPGY+ PFR+LPYGVR ++G +E TSLRRLARVLPPHFALGRSRQ QGLA+A
Sbjct: 392  DADMLPGIVPGYEPPFRVLPYGVRSSLGLQEATSLRRLARVLPPHFALGRSRQLQGLAVA 451

Query: 1498 MVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSPDV 1319
            M KLWERS I  IALKRGVQLTTSERMAEDIK+LTGG L++RNKDF+VFYRGKNFLSP+V
Sbjct: 452  MAKLWERSLIXKIALKRGVQLTTSERMAEDIKRLTGGVLLSRNKDFLVFYRGKNFLSPEV 511

Query: 1318 TEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADARWGKRLD 1139
            TEALLERERLAK LQDEEEQARLRAS+ +I + E+ +  GTAGTL ETL+ADA+WGKR+D
Sbjct: 512  TEALLERERLAKSLQDEEEQARLRASAMVIPNVEQAQHFGTAGTLGETLDADAKWGKRMD 571

Query: 1138 DEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPESI 959
            + ++ K+M+ A+  RH++L RKL+ KL  AERKLMKAE  L+KVE  L+P+   +DP+SI
Sbjct: 572  NHHKKKVMQEADILRHSNLXRKLERKLAFAERKLMKAEQALSKVEECLKPSMXQADPDSI 631

Query: 958  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKNVA 779
            TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK+++NA++F QVK +A
Sbjct: 632  TDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIMVNAKSFEQVKKIA 691

Query: 778  LALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRHEA 599
            LALEAESGGVLVSVDKVSK FAIIVYRGKDY RP TLRPKNLLTKRKALARSIE+QR EA
Sbjct: 692  LALEAESGGVLVSVDKVSKKFAIIVYRGKDYHRPSTLRPKNLLTKRKALARSIEIQRQEA 751

Query: 598  LCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLETY 419
            L KHIS +Q KV  L+ E++QM++VK+ GDE LY+KL+S+YP+          + YLETY
Sbjct: 752  LLKHISVVQSKVDTLRSEIEQMDAVKEHGDEVLYDKLDSSYPT-DDDDDSEEEDVYLETY 810

Query: 418  HSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPYDHQN 296
             +  D ED  GN S+              H E+ FP++ QN
Sbjct: 811  SAENDGEDE-GNYST-----------HDPHLESIFPFNIQN 839


>ref|XP_010917579.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Elaeis guineensis]
          Length = 883

 Score =  991 bits (2561), Expect = 0.0
 Identities = 534/847 (63%), Positives = 630/847 (74%), Gaps = 3/847 (0%)
 Frame = -2

Query: 2935 VSSTCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERN 2756
            ++ T Q+HP    DS  ASLSR    RL   R S S    K     NLR  +++   +  
Sbjct: 3    LAPTLQLHPAPLFDSLHASLSRLQSPRLLLFRCSSSTAPPK-----NLRFSANSVHHQAP 57

Query: 2755 RQKKSNLVAENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNG 2576
              K S     + +  P   P     S  +     W+  W  ++F   PKRP+AVLDYR G
Sbjct: 58   AAKSSPFSGSSHR--PRRLPAEDLSSRRT-----WIKSWHPSRFLTRPKRPRAVLDYREG 110

Query: 2575 GVSSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERNER-VPERGSVEDIFYVEEGM 2399
             +SS+DD    S ST +STM++IVEKLK+FGY+DD  ER E  +PE+GSVEDIFY E+G+
Sbjct: 111  -ISSDDDVVGTSRSTGSSTMEKIVEKLKKFGYIDDSDERKESPLPEKGSVEDIFYAEDGI 169

Query: 2398 LPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVR--NSVRMRRSKTSVAELT 2225
            LP+S GG   +    V            FPWEKR  N E V   +S R RRSKTS+AELT
Sbjct: 170  LPDSSGGLSLDLNKEVR-----------FPWEKRLENKEGVGGGSSARKRRSKTSLAELT 218

Query: 2224 LPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRL 2045
            LP+ ELRRLRH+AV +KS+ KI GAGVTK IVD IHE+WK +EVVRLKCEG P LNMKR 
Sbjct: 219  LPEGELRRLRHMAVRIKSKTKIKGAGVTKEIVDLIHEQWKTTEVVRLKCEGAPALNMKRT 278

Query: 2044 HEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATR 1865
            HEILERKTGGLVIWRSGTS+SLYRGVGYE+   +  K++ Q V +   D+F+  T   T 
Sbjct: 279  HEILERKTGGLVIWRSGTSISLYRGVGYEILLPE--KRQYQNVQRSAVDTFNKGTYHPTG 336

Query: 1864 DSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPL 1685
             S        +Q        + E+KK+     EIKYE EIDKLLDGLGPRYTDWPGS PL
Sbjct: 337  VSTANGRGNNVQDLQEDSTASLEKKKDTEPDAEIKYEREIDKLLDGLGPRYTDWPGSDPL 396

Query: 1684 PVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLA 1505
            PVDADLLP +VPGYK PFRILPYGVR T+G KE T+LRRLAR+LPPHFALGRSRQHQGLA
Sbjct: 397  PVDADLLPSLVPGYKPPFRILPYGVRRTLGLKEGTALRRLARLLPPHFALGRSRQHQGLA 456

Query: 1504 MAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSP 1325
             AMVKLWE+SSIA IALKRGVQLT SERMAE+IKKLTGG +++ NKD++VFYRGK+FL+P
Sbjct: 457  AAMVKLWEKSSIAKIALKRGVQLTMSERMAEEIKKLTGGMILSSNKDYLVFYRGKDFLAP 516

Query: 1324 DVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADARWGKR 1145
            +VTEALLERERLAK LQD+EEQARLRASSS++S+FE   + GTAGTL ETLEADARWG R
Sbjct: 517  EVTEALLERERLAKTLQDKEEQARLRASSSVVSNFEIADEPGTAGTLGETLEADARWGNR 576

Query: 1144 LDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPE 965
            LD ++  KMMRAAE ARHADLVRKL+ +L +AER+LMKAE  L+KVE  L+PAE ++DPE
Sbjct: 577  LDQDHMEKMMRAAEMARHADLVRKLERRLSIAERRLMKAEKALSKVEESLKPAEHAADPE 636

Query: 964  SITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKN 785
            SITDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVKVI+  + F Q K+
Sbjct: 637  SITDEERFMFRKLGLRMKAFLLLGRRGVFAGTVENMHLHWKYRELVKVIVKTKTFEQAKH 696

Query: 784  VALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRH 605
            +AL+LE+ESGGVLVSVDKVSKGFAIIVYRGKDYQRP  LRPKNLLTKRKALARSIELQRH
Sbjct: 697  IALSLESESGGVLVSVDKVSKGFAIIVYRGKDYQRPPALRPKNLLTKRKALARSIELQRH 756

Query: 604  EALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSAXXXXXXXXXEAYLE 425
            EA+  HISNLQ++V+ L+ EL QM++VKD+GDE+LY KL+SAY +          EAYL 
Sbjct: 757  EAISHHISNLQKRVEQLRSELVQMDNVKDQGDEDLYAKLDSAYSTEDEDTEDEDDEAYLH 816

Query: 424  TYHSGAD 404
            T+++  D
Sbjct: 817  TFNTAVD 823


>ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma cacao]
            gi|508714003|gb|EOY05900.1| CRM family member 3A isoform
            1 [Theobroma cacao]
          Length = 876

 Score =  982 bits (2538), Expect = 0.0
 Identities = 536/900 (59%), Positives = 647/900 (71%), Gaps = 23/900 (2%)
 Frame = -2

Query: 2926 TCQIHP-----TAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHH--FSSNLRTISSAPF 2768
            T Q HP     + F+DSFQ  LS+F G  L F  Y  SN   K    +++N    S++ F
Sbjct: 6    TRQFHPATTTKSTFLDSFQTRLSKFHGLPLPFCSYDSSNFPLKTSTLYAANYTVTSNSLF 65

Query: 2767 PERNRQKKSNLVAENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLD 2588
             +  + K         K  P + P  ++         NW+D W+ T     PK PK V +
Sbjct: 66   HQYPKSKT--------KAFPTKDPTFRS---------NWLDSWNKTHKGFGPKPPKTVFN 108

Query: 2587 YRNGG------VSSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERNE-------RV 2447
            YR  G       S  D+ G     +S+STM++IVEKLK+FGY+ +  E+ E       RV
Sbjct: 109  YRKKGDVWSLSYSQSDNNGR----SSSSTMEKIVEKLKKFGYIGEENEQKEKGEEEPKRV 164

Query: 2446 PERGSVEDIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNS 2267
             ERGS+EDIFYVEEGMLPN+RGGF  ESPLG+EN   G DG   FPWEKR  + E    +
Sbjct: 165  IERGSIEDIFYVEEGMLPNNRGGFSKESPLGMENVF-GSDGEVRFPWEKRKEDEEEGGWT 223

Query: 2266 VRMRRSKTSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVR 2087
             R R SKTS+AELTLP+SELRRLR+L    KS+++I GAGVT+ +VD IHEKWK  E+VR
Sbjct: 224  AR-RDSKTSLAELTLPESELRRLRNLTFRTKSKVRIKGAGVTQEVVDTIHEKWKTEEIVR 282

Query: 2086 LKCEGPPTLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKK 1907
            LK EG P LNMKR+HEILERKTGGLVIWRSGTSVSLYRGV YE+PS    K+    + K+
Sbjct: 283  LKIEGAPALNMKRMHEILERKTGGLVIWRSGTSVSLYRGVSYEVPSVHLSKR----IYKR 338

Query: 1906 NHDSFSIATEKA---TRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKL 1736
            N ++F+ A       T+D      H  + +  A+ E  AE  K+  S+PEI+YE E+DKL
Sbjct: 339  N-ETFTYALPSVSDKTKDLSSLGSHKDVVSPQANSETAAEGNKDTESLPEIRYEDEVDKL 397

Query: 1735 LDGLGPRYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARV 1556
            L+GLGPRYTDWPG  PLPVDADLLPG+V GY+ PFR+LPYGVR ++G KE TSLRRLARV
Sbjct: 398  LEGLGPRYTDWPGCNPLPVDADLLPGIVAGYQPPFRVLPYGVRSSLGLKEATSLRRLARV 457

Query: 1555 LPPHFALGRSRQHQGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLIT 1376
            LPPHFA+GRSRQ QGLA+AM+KLWE+SSIA IALKRGVQLTTSERMAEDIKKLTGG L++
Sbjct: 458  LPPHFAIGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMAEDIKKLTGGMLLS 517

Query: 1375 RNKDFIVFYRGKNFLSPDVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGT 1196
            RNKDF+VFYRGKNFLS DV EAL+ERERLAK LQDEEEQARLRAS+ L+   E  +Q G 
Sbjct: 518  RNKDFLVFYRGKNFLSADVAEALVERERLAKSLQDEEEQARLRASAFLVPSTEVAEQSGA 577

Query: 1195 AGTLEETLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVL 1016
            AGTL ETL+ADARWGKRLD+ ++ K+M+ AE  RHA+LVRKLD  L  A+RKL+KAE  L
Sbjct: 578  AGTLGETLDADARWGKRLDNHHKEKVMKEAEILRHANLVRKLDKNLAFADRKLLKAERAL 637

Query: 1015 AKVEALLQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYR 836
             KVE  L+PA+R +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYR
Sbjct: 638  TKVEDYLKPADRQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYR 697

Query: 835  ELVKVIINARNFSQVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKN 656
            ELVK+I+ A+ F QVK VALALEAESGGVLVSVD++SKG+AIIVYRGKDYQRP T+RPKN
Sbjct: 698  ELVKIIMKAKTFDQVKKVALALEAESGGVLVSVDRISKGYAIIVYRGKDYQRPSTIRPKN 757

Query: 655  LLTKRKALARSIELQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAY 476
            LLTKR+ALARSIELQR EAL KH+S LQ KV  ++ E+DQM S++++GDEE Y++L+S+Y
Sbjct: 758  LLTKRRALARSIELQRREALVKHVSALQAKVDKIRSEIDQMHSMEEQGDEEFYDRLDSSY 817

Query: 475  PSAXXXXXXXXXEAYLETYHSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPYDHQN 296
            P+          EAYLETY S  D E+    +            I + H ET FP+  Q+
Sbjct: 818  PTDDDDTEEEGDEAYLETYESENDAEEENDEL------------IHNLHLETKFPFHDQH 865


>ref|XP_011091130.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Sesamum indicum]
          Length = 886

 Score =  981 bits (2537), Expect = 0.0
 Identities = 536/894 (59%), Positives = 646/894 (72%), Gaps = 15/894 (1%)
 Frame = -2

Query: 2935 VSSTCQIHP--TAFIDSFQASLSRFS-GYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFP 2765
            V  + Q +P  +  +D+FQ+S+S+F     LQF RYS S P K   F     T S    P
Sbjct: 3    VMPSYQFYPKNSFLMDTFQSSVSKFHVRTTLQFFRYSSSLPVKNRFFCVIDETSSRNSVP 62

Query: 2764 ERNRQKKSNLVAENRKNGPL---ETPISQTP-SNGSFPIGNWMDKWSGTQFQNLPKRPKA 2597
            + N  K+ NL+  N+K G     E PISQ+  S       +W+  W  T   N  +RP+A
Sbjct: 63   QENPHKRFNLLPRNKKGGSSFSGEEPISQSSNSRVILSRSSWLANWDVTSKPNGGRRPQA 122

Query: 2596 VLDYRN-GGVSSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERNER---VPERGSV 2429
            V++YRN G VSS D E   STS+  STM RIVEKLK+FGY+DD   +NE    V E+GS+
Sbjct: 123  VVNYRNRGDVSSSDSEEGTSTSSGGSTMQRIVEKLKKFGYIDDDSNKNENMGGVIEKGSI 182

Query: 2428 EDIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRS 2249
            EDIFYVEEG+LPN+RGGF  E P G EN    G+G   FPWEK  L  +  + S+  RRS
Sbjct: 183  EDIFYVEEGLLPNTRGGFSEEFPFGDENGVARGNGEVRFPWEKDALGEQ--KRSLDSRRS 240

Query: 2248 KTSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGP 2069
            + S+AELTLP+ ELRRL +LA+ +K++ +IGGAGVT+ +V+ I EKWK SEVVRLK EGP
Sbjct: 241  R-SLAELTLPEPELRRLTNLALRIKNKTRIGGAGVTQQVVETIREKWKTSEVVRLKIEGP 299

Query: 2068 PTLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKK---SQLVPKKNHD 1898
            P LNM+R+HEILERKTGGLVIWRSGTS++LYRGV YE  SA  +KK+      +P K+H 
Sbjct: 300  PALNMRRMHEILERKTGGLVIWRSGTSLALYRGVTYE-DSATKLKKRIFRRNELPHKSHS 358

Query: 1897 SFSIATEKATRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGP 1718
                AT+K  +DS E       +           + ++P +  E++YE E+DKLLD LGP
Sbjct: 359  ----ATDKTGQDSSESGVLPDREVPSPESVSLNPDDRDPETSSEVRYEDEVDKLLDSLGP 414

Query: 1717 RYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFA 1538
            RYTDWPG  PLPVDADLLPG VPGY+ PFR+LPYGVR T+G KE T+LRRLARVLPPHFA
Sbjct: 415  RYTDWPGDDPLPVDADLLPGTVPGYRPPFRLLPYGVRSTLGMKEATALRRLARVLPPHFA 474

Query: 1537 LGRSRQHQGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFI 1358
            LGRSRQHQGLA AM+KLWERSSIA IALKRGVQLTTSERMAED+K+LTGG L++RNKDF+
Sbjct: 475  LGRSRQHQGLAAAMIKLWERSSIAKIALKRGVQLTTSERMAEDLKRLTGGMLLSRNKDFL 534

Query: 1357 VFYRGKNFLSPDVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEE 1178
            V+YRGK+FLSPDV EALLE+ERLAK LQDEEEQARLRA + +    E   + GTAGTL+E
Sbjct: 535  VYYRGKDFLSPDVAEALLEKERLAKALQDEEEQARLRALALIAPAVEETDESGTAGTLKE 594

Query: 1177 TLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEAL 998
            TL+AD RWGKRLDD ++ K+MR AE  RHA+LVRKL+ KL  AERKL KAE  L+KVE  
Sbjct: 595  TLDADTRWGKRLDDVHKEKVMREAEVLRHANLVRKLENKLAFAERKLSKAERALSKVEES 654

Query: 997  LQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVI 818
            L PA+R+ DPES+TDEERFMFRKLGLRMKAFLLLGRRGVF GTVENMHLHWKYRELVK+I
Sbjct: 655  LYPADRAQDPESLTDEERFMFRKLGLRMKAFLLLGRRGVFGGTVENMHLHWKYRELVKII 714

Query: 817  INARNFSQVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRK 638
            + A+N  +VKN+ALALEAESGGVLVSVDKVSKG+AIIV+RG+DY+RP  LRPKNLLTKRK
Sbjct: 715  VKAQNIEEVKNIALALEAESGGVLVSVDKVSKGYAIIVFRGRDYKRPSLLRPKNLLTKRK 774

Query: 637  ALARSIELQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAY-PSAXX 461
            ALARSIELQR EAL  H+S LQ +V  L+ E++QM +VK++GDEELY KL+SAY      
Sbjct: 775  ALARSIELQRREALLNHMSTLQTRVNQLRSEIEQMAAVKEQGDEELYNKLDSAYLTEDED 834

Query: 460  XXXXXXXEAYLETYHSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPYDHQ 299
                   EAYL TY S  D  D   +            S+ + +  TNFPYD Q
Sbjct: 835  SEEEGDEEAYLGTYDSDNDMVDENND------------SVHNTYLGTNFPYDFQ 876


>ref|XP_012473005.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Gossypium raimondii]
            gi|763754573|gb|KJB21904.1| hypothetical protein
            B456_004G020400 [Gossypium raimondii]
          Length = 853

 Score =  976 bits (2522), Expect = 0.0
 Identities = 536/898 (59%), Positives = 644/898 (71%), Gaps = 14/898 (1%)
 Frame = -2

Query: 2947 LMSPVSSTCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSN-PHKKHHFSSNLRTISSAP 2771
            L  P ++T     T F+DSFQ SLSRF G  L F RYS S+ P K  +F ++   I+S  
Sbjct: 3    LFHPTTTT----KTTFLDSFQTSLSRFHGLPLPFFRYSSSHFPLKTLNFCASKHAITS-- 56

Query: 2770 FPERNRQKKSNLVAENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVL 2591
                N Q   N             P S+T +  +F   NW+D W+ T  +N PK PK V 
Sbjct: 57   ----NAQIHPN-------------PESKTKAFPTFS-SNWLDNWNKTHKRNGPKPPKTVF 98

Query: 2590 DYRNGG------VSSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERNERVP----E 2441
            +YR  G       S  D+ GS     S+STM++IVEKLK+FGY+ +  E+ E  P    E
Sbjct: 99   NYRKDGNLWSLSYSKSDNNGS----GSSSTMEKIVEKLKKFGYIGEENEQKEEQPRKVIE 154

Query: 2440 RGSVEDIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVR 2261
            RGS+ED+FYVEEGMLPN+RGGF  ESPLG+E ++ G DG  +FPWEKR    E  + + R
Sbjct: 155  RGSIEDMFYVEEGMLPNTRGGFSKESPLGME-TEFGSDGEIMFPWEKRKEEQEEGKWTAR 213

Query: 2260 MRRSKTSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLK 2081
               +K S+AELTLP+SELRRLR+L    KS+M+I GAGVT+ +VD IHEKWK  E+VRLK
Sbjct: 214  -GDNKASLAELTLPESELRRLRNLTFRTKSKMRIKGAGVTQEVVDTIHEKWKTMEIVRLK 272

Query: 2080 CEGPPTLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNH 1901
             EG P LNMKR+HEILERKTGGLVIWRSGTS+SLYRGV YE+PS   V    Q+  +   
Sbjct: 273  VEGAPALNMKRMHEILERKTGGLVIWRSGTSISLYRGVSYEVPS---VHLNKQIYKRNEM 329

Query: 1900 DSFS--IATEKATRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDG 1727
             ++S  + ++K T D      H  +    ++ E   EE K    +PEIKYE E+DKLL+G
Sbjct: 330  STYSSPLVSDK-TEDPSGLVPHKDVAPPQSNSETATEEHKNTEPLPEIKYEDEVDKLLEG 388

Query: 1726 LGPRYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPP 1547
            LGPRY DWPG  PLPVDADLLPG+VPGY+ PFR+LPYGVR ++G KE TSLRRLARVLPP
Sbjct: 389  LGPRYADWPGCDPLPVDADLLPGIVPGYQPPFRVLPYGVRSSLGVKEATSLRRLARVLPP 448

Query: 1546 HFALGRSRQHQGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNK 1367
            HFA+GRSRQ QGLA+AM KLWE+SSIA IALKRGVQLTTSERMAED+KKLTGG L++RNK
Sbjct: 449  HFAIGRSRQLQGLAVAMTKLWEKSSIAKIALKRGVQLTTSERMAEDLKKLTGGILLSRNK 508

Query: 1366 DFIVFYRGKNFLSPDVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGT 1187
            DF+VFYRGKNFLS DV EALLERERLAK LQD EEQARLRAS+      E  +Q G AGT
Sbjct: 509  DFLVFYRGKNFLSADVAEALLERERLAKSLQDVEEQARLRASALFAQSTEVAEQSGAAGT 568

Query: 1186 LEETLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKV 1007
            L ETL+ADARWGKRLDD ++ K+++ AE  RHA+LVRKL+  L  AERKL+KAE  L+KV
Sbjct: 569  LGETLDADARWGKRLDDHHKEKVLKEAEILRHANLVRKLEKNLAFAERKLLKAERALSKV 628

Query: 1006 EALLQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 827
            E  L+PA+R +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELV
Sbjct: 629  EDYLKPADRQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELV 688

Query: 826  KVIINARNFSQVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLT 647
            K+I+ A+NF QVK VA+ALEAESGGVLVSVDK+SKG+AIIVYRGKDY+RP T+RPKNLLT
Sbjct: 689  KIIMKAKNFDQVKKVAIALEAESGGVLVSVDKISKGYAIIVYRGKDYERPSTIRPKNLLT 748

Query: 646  KRKALARSIELQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPS- 470
            KR+ALARSIELQR EAL KHIS LQ KV+ L+ E+DQM S+   GDEE Y++L+S+YPS 
Sbjct: 749  KRRALARSIELQRREALVKHISALQAKVEKLRSEIDQMHSMDARGDEEFYDRLDSSYPSD 808

Query: 469  AXXXXXXXXXEAYLETYHSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPYDHQN 296
                      EAYL TY    D E+   ++                H ETNFP+ +Q+
Sbjct: 809  DDDDTEEEGDEAYLGTYDGENDGEEENDDL----------------HLETNFPFHNQH 850


>gb|KDO45877.1| hypothetical protein CISIN_1g002316mg [Citrus sinensis]
          Length = 936

 Score =  974 bits (2517), Expect = 0.0
 Identities = 528/910 (58%), Positives = 637/910 (70%), Gaps = 39/910 (4%)
 Frame = -2

Query: 2908 TAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQKKSNLVA 2729
            TA  DSFQ+S S+F G    F R  HS P K   F  N    SS    E+N  +K+   +
Sbjct: 13   TAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNF---SSNSAHEKNPPRKTCSFS 69

Query: 2728 ENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNGGV------- 2570
             N      +   +    + S    +W+ KW+     N  K P+A ++YR   V       
Sbjct: 70   TNNFFSQHDKDDNANLCSSS----SWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGF 125

Query: 2569 --SSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDD------------MIERNERVPERGS 2432
              +  D  G        STM +IVEKLK+FGYV D              +  ERV E+GS
Sbjct: 126  ARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERVIEKGS 185

Query: 2431 VEDIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRR 2252
            +EDIFYVEEG+LPN+RGGF  ESPLG+   + G DG   FPWEKR       R  V+ R 
Sbjct: 186  IEDIFYVEEGLLPNARGGFSKESPLGL-GEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRS 244

Query: 2251 SKTSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEG 2072
            S+TS+AELTLP+SELRRLR+L    KS+ +I GAG+T+A+VD IHEKWK SE+VRLK EG
Sbjct: 245  SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304

Query: 2071 PPTLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKK-----------KS 1925
             P LNMKR+HEILERKTGGLVIWRSGT+VSLYRGV YE+PS Q  K+            S
Sbjct: 305  APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVS 364

Query: 1924 QLVPKKNH-------DSFSIATEKATRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPE 1766
            Q   K+ H       +S S A +K  +D      +  + AT  +LE TA E++E + + E
Sbjct: 365  QATDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHATQVNLE-TASEEQETDFVRE 423

Query: 1765 IKYETEIDKLLDGLGPRYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKE 1586
            +KYE E++KLLDGLGPRYTDWPG  PLPVDAD+LPG+VPGY+ PFR+LPYGVR T+  KE
Sbjct: 424  VKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKE 483

Query: 1585 MTSLRRLARVLPPHFALGRSRQHQGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDI 1406
             T+L+RLARVLPPHFALGRSRQ QGLA+AM+KLWE+SSIA IALKRGVQLTTSERM EDI
Sbjct: 484  ATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDI 543

Query: 1405 KKLTGGTLITRNKDFIVFYRGKNFLSPDVTEALLERERLAKDLQDEEEQARLRASSSLIS 1226
            KKLTGGTL++RNKDF+VFYRGKNFLSPDVTEAL ERERLAK LQDEEEQARLRAS+ ++ 
Sbjct: 544  KKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLP 603

Query: 1225 DFERIKQLGTAGTLEETLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAE 1046
              E I++ GTAGTL+ETL+A++RWGKRLDD ++  ++R AE  RHA LV+KL+ KL  AE
Sbjct: 604  SIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE 663

Query: 1045 RKLMKAESVLAKVEALLQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 866
            RKL++AE  L+KVE  L+PAER +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV
Sbjct: 664  RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTV 723

Query: 865  ENMHLHWKYRELVKVIINARNFSQVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDY 686
            ENMHLHWKYRELVK+I+  + F Q K +ALALEAESGGVLVSVDK+SKG+A++VYRGKDY
Sbjct: 724  ENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 783

Query: 685  QRPRTLRPKNLLTKRKALARSIELQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDE 506
            QRP TLRPKNLLTKRKALARSIELQR EAL KH++ L+     L+ E++QM SVK  GDE
Sbjct: 784  QRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDE 843

Query: 505  ELYEKLESAYPSAXXXXXXXXXEAYLETYHSGADNEDHYGNISSGXXXXXXNTSIRSFHP 326
            +LY+KL+SAY +          EAYLE Y  G DNED   N            S  +   
Sbjct: 844  QLYDKLDSAYATEDDDSEDEGDEAYLEMYAGGNDNEDEIDN------------STHNLEM 891

Query: 325  ETNFPYDHQN 296
            E++FPY  Q+
Sbjct: 892  ESDFPYHAQD 901


>gb|KHG05234.1| Chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic [Gossypium arboreum]
          Length = 853

 Score =  973 bits (2516), Expect = 0.0
 Identities = 535/898 (59%), Positives = 641/898 (71%), Gaps = 14/898 (1%)
 Frame = -2

Query: 2947 LMSPVSSTCQIHPTAFIDSFQASLSRFSGYRLQFLRYSHSN-PHKKHHFSSNLRTISSAP 2771
            L  P ++T     T F+DSFQ SLSRF G    F RYS  + P K  +F +N  TI+S  
Sbjct: 3    LFHPTTTT----KTTFLDSFQTSLSRFHGLPHPFFRYSSFHFPLKTLNFCANNHTITS-- 56

Query: 2770 FPERNRQKKSNLVAENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVL 2591
                N Q   N             P S+T    +F   NW+D W+ T  +N PK PK V 
Sbjct: 57   ----NSQIHPN-------------PESKTKGFPTFS-SNWLDNWNKTHKRNGPKPPKTVF 98

Query: 2590 DYRNGG------VSSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERNERVP----E 2441
            +YR  G       S  D+ GS     S+STM++IVEKLK+FGY+ +  E+ E  P    E
Sbjct: 99   NYRKDGNLWSLSYSKSDNNGS----GSSSTMEKIVEKLKKFGYIGEENEQKEEQPRKVIE 154

Query: 2440 RGSVEDIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVR 2261
            RGS+ED+FYVEEGMLPN+RGGF  ESPLG+E ++ G DG  +FPWEKR    E  + + R
Sbjct: 155  RGSIEDMFYVEEGMLPNTRGGFSKESPLGME-TEFGSDGEIMFPWEKRKEEQEEGKWTAR 213

Query: 2260 MRRSKTSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLK 2081
               +K S+AELTLP+SELRRLR+L    KS+M+I GAGVT+ +VD IHEKWK  E+VRLK
Sbjct: 214  -GDNKASLAELTLPESELRRLRNLTFRTKSKMRIKGAGVTQEVVDTIHEKWKTMEIVRLK 272

Query: 2080 CEGPPTLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNH 1901
             EG P LNMKR+HEILERKTGGLVIWRSGTS+SLYRGV YE+PS   V    Q+  +   
Sbjct: 273  VEGAPALNMKRMHEILERKTGGLVIWRSGTSISLYRGVSYEVPS---VHLNKQIYKRNEM 329

Query: 1900 DSFS--IATEKATRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDG 1727
             ++S  + ++K T D  +   H  +     + E   EE K    +PEIKYE E+DKLL+G
Sbjct: 330  STYSSPLVSDK-TEDPSDLVPHKDVAPPQTNSETATEEHKNTEPLPEIKYEDEVDKLLEG 388

Query: 1726 LGPRYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPP 1547
            LGPRY DWPG  PLPVDADLLPG+VPGY+ PFR+LPYGVR ++G KE TSLRRLARVLPP
Sbjct: 389  LGPRYADWPGCDPLPVDADLLPGIVPGYQPPFRVLPYGVRSSLGVKEATSLRRLARVLPP 448

Query: 1546 HFALGRSRQHQGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNK 1367
            HFALGRSRQ QGLA+AM KLWE+SSIA IALKRGVQLTTSERMAED+KKLTGG L++RNK
Sbjct: 449  HFALGRSRQLQGLAVAMTKLWEKSSIAKIALKRGVQLTTSERMAEDLKKLTGGILLSRNK 508

Query: 1366 DFIVFYRGKNFLSPDVTEALLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGT 1187
            DF+VFYRGKNFLS DV EALLERERLAK LQD EEQARLRAS+      E  +Q G AGT
Sbjct: 509  DFLVFYRGKNFLSADVAEALLERERLAKSLQDVEEQARLRASALFAQSTEVAEQSGAAGT 568

Query: 1186 LEETLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKV 1007
            L ETL+ADARWGKRLDD ++ K+++ AE  RHA+LVRKL+  L  AERKL+KAE  L+KV
Sbjct: 569  LGETLDADARWGKRLDDHHKEKVLKEAEILRHANLVRKLEKNLAFAERKLLKAEQALSKV 628

Query: 1006 EALLQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 827
            E  L+PA+R +DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELV
Sbjct: 629  EDYLKPADRQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELV 688

Query: 826  KVIINARNFSQVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLT 647
            K+I+ A+NF QVK VA+ALEAESGGVLVSVDK+SKG+AIIVYRG DY+RP T+RPKNLLT
Sbjct: 689  KIIMKAKNFDQVKKVAIALEAESGGVLVSVDKISKGYAIIVYRGNDYERPSTIRPKNLLT 748

Query: 646  KRKALARSIELQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPS- 470
            KR+ALARSIELQR EAL KHIS LQ KV+ ++ E+DQM S+   GDEE Y++L+S+YPS 
Sbjct: 749  KRRALARSIELQRREALVKHISALQAKVEKIRSEIDQMHSMDARGDEEFYDRLDSSYPSD 808

Query: 469  AXXXXXXXXXEAYLETYHSGADNEDHYGNISSGXXXXXXNTSIRSFHPETNFPYDHQN 296
                      EAYL TY    D E+   ++                H ETNFP+ +Q+
Sbjct: 809  DDDDTEEEGDEAYLGTYDGENDGEEENDDL----------------HLETNFPFHNQH 850


>ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
            gi|557521988|gb|ESR33355.1| hypothetical protein
            CICLE_v10004262mg [Citrus clementina]
          Length = 934

 Score =  973 bits (2516), Expect = 0.0
 Identities = 527/908 (58%), Positives = 636/908 (70%), Gaps = 37/908 (4%)
 Frame = -2

Query: 2908 TAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQKKSNLVA 2729
            TA  DSFQ+S S+F G    F R  HS P K H F  N    SS    E+N  +K    +
Sbjct: 13   TAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNHFFYQNF---SSNSAHEKNTPRKICSFS 69

Query: 2728 ENRKNGPLETPISQTPSNGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNGGV------- 2570
             N      +   +    + S    +W+ KW+     N  K P+A ++YR   V       
Sbjct: 70   TNNFFSQHDKDDNANLCSSS----SWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGF 125

Query: 2569 --SSEDDEGSCSTSTSASTMDRIVEKLKRFGYVDD----------MIERNERVPERGSVE 2426
              +  D  G        STM +IVEKLK+FGYV D            +  ERV E+GS+E
Sbjct: 126  ARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVIEKGSIE 185

Query: 2425 DIFYVEEGMLPNSRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSK 2246
            DIFYVEEG+LPN+RGGF  ESPLG+   + G DG   FPWEKR       R  V+ R S+
Sbjct: 186  DIFYVEEGLLPNARGGFSKESPLGL-GEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSR 244

Query: 2245 TSVAELTLPDSELRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPP 2066
            TS+AELTLP+SELRRLR+L    KS+ +I GAG+T+A+VD IHEKWK SE+VRLK EG P
Sbjct: 245  TSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAP 304

Query: 2065 TLNMKRLHEILERKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKK-----------KSQL 1919
             LNMKR+HEILERKTGGLVIWRSGT+VSLYRGV YE+PS Q  K+            SQ 
Sbjct: 305  ALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQA 364

Query: 1918 VPKKNH-------DSFSIATEKATRDSIEKSFHGYMQATHASLEDTAEEKKEPNSMPEIK 1760
              K+ H       +S S A +K  +D      +  +  T  +LE TA E++E + + E+K
Sbjct: 365  TDKQIHKQISMSGNSLSAAADKTAQDPSNFDSYNNVHVTQVNLE-TASEEQETDFVREVK 423

Query: 1759 YETEIDKLLDGLGPRYTDWPGSGPLPVDADLLPGVVPGYKSPFRILPYGVRPTIGGKEMT 1580
            YE E++KLLDGLGPRYTDWPG  PLPVDAD+LPG+VPGY+ PFR+LPYGVR T+  KE T
Sbjct: 424  YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 483

Query: 1579 SLRRLARVLPPHFALGRSRQHQGLAMAMVKLWERSSIAIIALKRGVQLTTSERMAEDIKK 1400
            +L+RLARVLPPHFALGRSRQ QGLA+AM+KLWE+SSIA IALKRGVQLTTSERM EDIKK
Sbjct: 484  NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 543

Query: 1399 LTGGTLITRNKDFIVFYRGKNFLSPDVTEALLERERLAKDLQDEEEQARLRASSSLISDF 1220
            LTGGTL++RNKDF+VFYRGKNFLSPDVTEAL ERERLAK LQDEEEQARLRAS+ ++   
Sbjct: 544  LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSI 603

Query: 1219 ERIKQLGTAGTLEETLEADARWGKRLDDEYRNKMMRAAEAARHADLVRKLDLKLHLAERK 1040
            E I++ GTAGTL+ETL+A++RWGKRLDD ++  ++R AE  RHA LV+KL+ KL  AERK
Sbjct: 604  ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERK 663

Query: 1039 LMKAESVLAKVEALLQPAERSSDPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 860
            L++AE  L+KVE  L+PAER +DPESIT+EERFMFRKLGLRMKAFLLLGRRGVFDGTVEN
Sbjct: 664  LLRAERALSKVEESLKPAERQADPESITNEERFMFRKLGLRMKAFLLLGRRGVFDGTVEN 723

Query: 859  MHLHWKYRELVKVIINARNFSQVKNVALALEAESGGVLVSVDKVSKGFAIIVYRGKDYQR 680
            MHLHWKYRELVK+I+  + F Q K +ALALEAESGGVLVSVDK+SKG+A++VYRGKDYQR
Sbjct: 724  MHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQR 783

Query: 679  PRTLRPKNLLTKRKALARSIELQRHEALCKHISNLQQKVKNLKYELDQMESVKDEGDEEL 500
            P TLRPKNLLTKRKALARSIELQR EAL KH++ L+     L+ E++QM SVK  GDE+L
Sbjct: 784  PSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQL 843

Query: 499  YEKLESAYPSAXXXXXXXXXEAYLETYHSGADNEDHYGNISSGXXXXXXNTSIRSFHPET 320
            Y+KL+SAY +          EAYLE Y  G DNED   N            S  +   E+
Sbjct: 844  YDKLDSAYATEDDDSEDEGDEAYLEMYAGGNDNEDEIDN------------STHNLEMES 891

Query: 319  NFPYDHQN 296
            +FPY  Q+
Sbjct: 892  DFPYHAQD 899


>ref|XP_009394449.1| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1,
            chloroplastic-like [Musa acuminata subsp. malaccensis]
          Length = 918

 Score =  969 bits (2505), Expect = 0.0
 Identities = 530/848 (62%), Positives = 619/848 (72%), Gaps = 6/848 (0%)
 Frame = -2

Query: 2920 QIHPTAFIDSFQASLSRFSGYRLQFLRYSHSNPHKKHHFSSNLRTISSAPFPERNRQKKS 2741
            Q+H T   DS  AS SR    RL         P ++       R  SSA FP RN     
Sbjct: 5    QLHSTTLFDSLHASFSRLHFPRLLL-------PLRRCRCC---RFSSSATFPSRNPY--- 51

Query: 2740 NLVAENRKNGPLETPISQT-PS-NGSFPIGNWMDKWSGTQFQNLPKRPKAVLDYRNGGVS 2567
                      P   P  +T PS         W+  W+  +F++LPK+P+A LDYR   VS
Sbjct: 52   ----------PNRDPCDKTLPSLKSDHQSAPWIKNWTEPRFRSLPKKPRAALDYRQS-VS 100

Query: 2566 SEDDEGSCSTSTSASTMDRIVEKLKRFGYVDDMIERNER-VPERGSVEDIFYVEEGMLPN 2390
            S+DDE   S ST +S M +IVEKL++FGY+DD  E  ER +PE+GSVEDIFY E+G+LP+
Sbjct: 101  SDDDEYGTSRSTGSSAMAKIVEKLRKFGYIDDSEEVKERPLPEKGSVEDIFYAEDGILPD 160

Query: 2389 SRGGFPAESPLGVENSDNGGDGRPLFPWEKRPLNGEAVRNSVRMRRSKTSVAELTLPDSE 2210
            SRGG   +            + +  FPWEK     E  + S R  RSKTS+AELTLP+ E
Sbjct: 161  SRGGLSWDV-----------NEKARFPWEKPREEEEEKQASARKTRSKTSLAELTLPEGE 209

Query: 2209 LRRLRHLAVAMKSRMKIGGAGVTKAIVDAIHEKWKLSEVVRLKCEGPPTLNMKRLHEILE 2030
            LRRLRHLA+  KS+ KIGGAGVTK IVD IHEKWK  EVVRLKCEGPP LNMKR+HEILE
Sbjct: 210  LRRLRHLAIRTKSKTKIGGAGVTKEIVDLIHEKWKTEEVVRLKCEGPPALNMKRMHEILE 269

Query: 2029 RKTGGLVIWRSGTSVSLYRGVGYELPSAQSVKKKSQLVPKKNHDSFSIATEKATRDSIEK 1850
            RKTGGLVIWRSGTS+SLYRGV YE+P  Q VK+  Q   + + DSF           +E 
Sbjct: 270  RKTGGLVIWRSGTSISLYRGVTYEIP--QLVKRPYQSNQRASLDSFKQPLGYRAEAFVEN 327

Query: 1849 SFHGYMQATHASLEDTAEEKKEPNSMPEIKYETEIDKLLDGLGPRYTDWPGSGPLPVDAD 1670
                ++      L    EE+K+  S P+I+YE+EIDKLLD LGPRYTDWPGSGP PVDAD
Sbjct: 328  GRGSHVAGPIEHLTVKVEEEKDVESPPKIEYESEIDKLLDDLGPRYTDWPGSGPPPVDAD 387

Query: 1669 LLPGVVPGYKSPFRILPYGVRPTIGGKEMTSLRRLARVLPPHFALGRSRQHQGLAMAMVK 1490
            LLP VVPGYK PFRILPYGVRP++G KE T+LRRLAR LPPHFALGRSRQHQGLA AMVK
Sbjct: 388  LLPSVVPGYKPPFRILPYGVRPSLGLKEGTALRRLARALPPHFALGRSRQHQGLAAAMVK 447

Query: 1489 LWERSSIAIIALKRGVQLTTSERMAEDIKKLTGGTLITRNKDFIVFYRGKNFLSPDVTEA 1310
            LWE+SSIA I+LKRGVQLT+SERMAEDIKKLTGG +++RNKD+IVFYRGK+FLSP+VTEA
Sbjct: 448  LWEKSSIAKISLKRGVQLTSSERMAEDIKKLTGGAILSRNKDYIVFYRGKDFLSPEVTEA 507

Query: 1309 LLERERLAKDLQDEEEQARLRASSSLISDFERIKQLGTAGTLEETLEADARWGKRLDDEY 1130
            LLERERLAK LQDEEEQARLRASSS+ SD +   + GTAGTL ETLEA ARWG  + D++
Sbjct: 508  LLERERLAKALQDEEEQARLRASSSVASDVDSFDESGTAGTLNETLEAAARWGNNIGDDH 567

Query: 1129 RNKMMRAAEAARHADLVRKLDLKLHLAERKLMKAESVLAKVEALLQPAERSSDPESITDE 950
             +KMMRAAE ARHA LV+KL+ KL +AERKL KA   LAKVE  L+P E   DPE+ITDE
Sbjct: 568  MDKMMRAAEMARHAGLVKKLERKLFIAERKLTKAGKALAKVEESLKPTEHVKDPEAITDE 627

Query: 949  ERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKVIINARNFSQVKNVALAL 770
            ERFMFRKLGLRMKAFLLLGRRGVFDGT+ENMHLHWKYRELVK+I+ A+ F+QV+NVALAL
Sbjct: 628  ERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYRELVKIIVKAKTFAQVQNVALAL 687

Query: 769  EAESGGVLVSVDKVSKGFAIIVYRGKDYQRPRTLRPKNLLTKRKALARSIELQRHEALCK 590
            EAESGGVLVSVDK+SKGFAIIVYRGKDY RP TLRPKNLLTKRKALARSIELQR EAL +
Sbjct: 688  EAESGGVLVSVDKISKGFAIIVYRGKDYHRPPTLRPKNLLTKRKALARSIELQRREALNR 747

Query: 589  HISNLQQKVKNLKYELDQMESVKDEGDEELYEKLESAYPSA-XXXXXXXXXEAYLETYHS 413
            HISN+Q+KV+ L+ EL  +++VKD GDEELY  L+SAY +           EAYL+T++ 
Sbjct: 748  HISNVQKKVEQLRSELVHLDNVKDHGDEELYANLDSAYSTEDEEDSEDEGDEAYLDTFNG 807

Query: 412  GA--DNED 395
                D +D
Sbjct: 808  SVAIDRDD 815