BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00010773
         (1552 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010921488.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   445   e-122
ref|XP_008781117.1| PREDICTED: RNA polymerase II-associated prot...   440   e-120
ref|XP_012088892.1| PREDICTED: RNA polymerase II-associated prot...   433   e-118
gb|KDP23389.1| hypothetical protein JCGZ_23222 [Jatropha curcas]      432   e-118
emb|CBI39598.3| unnamed protein product [Vitis vinifera]              432   e-118
ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot...   432   e-118
ref|XP_012088891.1| PREDICTED: RNA polymerase II-associated prot...   431   e-117
ref|XP_012088890.1| PREDICTED: RNA polymerase II-associated prot...   430   e-117
ref|XP_009373288.1| PREDICTED: RNA polymerase II-associated prot...   428   e-117
ref|XP_009373287.1| PREDICTED: RNA polymerase II-associated prot...   428   e-117
ref|XP_010267984.1| PREDICTED: RNA polymerase II-associated prot...   426   e-116
ref|XP_008246007.1| PREDICTED: RNA polymerase II-associated prot...   426   e-116
ref|XP_009416301.1| PREDICTED: RNA polymerase II-associated prot...   424   e-115
ref|XP_008388472.1| PREDICTED: RNA polymerase II-associated prot...   423   e-115
ref|XP_008388471.1| PREDICTED: RNA polymerase II-associated prot...   423   e-115
ref|XP_007031158.1| Tetratricopeptide repeat-like superfamily pr...   423   e-115
gb|KHG26705.1| RNA polymerase II-associated 3 [Gossypium arboreum]    420   e-114
ref|XP_012434281.1| PREDICTED: RNA polymerase II-associated prot...   416   e-113
ref|XP_009416309.1| PREDICTED: RNA polymerase II-associated prot...   416   e-113
ref|XP_007031161.1| Tetratricopeptide repeat (TPR)-like superfam...   416   e-113

>ref|XP_010921488.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated protein
            3 [Elaeis guineensis]
          Length = 471

 Score =  445 bits (1144), Expect = e-122
 Identities = 253/475 (53%), Positives = 315/475 (66%), Gaps = 43/475 (9%)
 Frame = -2

Query: 1512 MAGIPSNKHNRDRTLEFQGFLNDLQDWDHYLEKDK--KLKGQAHEEKKYDYFRN------ 1357
            MAG+ S K ++DR+LEFQGFLNDL+ WD YL KDK  K+KGQ+HE  K    RN      
Sbjct: 1    MAGV-SRKPDKDRSLEFQGFLNDLEGWD-YLLKDKGHKMKGQSHESNKRGSLRNAGKVNE 58

Query: 1356 -----------------SDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECY 1228
                             SDA+S + S   +EE +PDAASEKELGNEY+KQKK+ +AIECY
Sbjct: 59   DEGPLKKVPAVEVKSKYSDAISHMPSSFYSEEKLPDAASEKELGNEYFKQKKFPEAIECY 118

Query: 1227 SRSIALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKL 1048
            SRSIALSPT+VAFANRAMAY+K+K+FEEAENDCTEALNLDDRY+KAYSRRATARKELGKL
Sbjct: 119  SRSIALSPTSVAFANRAMAYLKLKRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKL 178

Query: 1047 KASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKM-- 874
            KASMED++FA RL+PNNQELRKQ++E KAL +KEI  K  G +KN  QGIQ +  S+M  
Sbjct: 179  KASMEDSEFATRLEPNNQELRKQHSETKALYEKEISKKIRGPLKNPFQGIQGVSNSEMGT 238

Query: 873  ---------------XXXXXXXXXXXXXXKIPSKPPNLMKEIEIRTT-TGNRREGQQLDE 742
                                             +P   +K+ + ++T  G       LD 
Sbjct: 239  KNARGDHSVLSNAQNAAAAANGTQTKDGEGTCDQPLIAVKDTDSKSTDVGKETREYLLDG 298

Query: 741  SLGGATPXXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEV 562
            S  GA                 KQ LKAS+++L             K+ITTP++AY+FEV
Sbjct: 299  SREGAA--LSSNNAKKDQDVGCKQVLKASMKDLASRAASRVMATAGKSITTPRTAYEFEV 356

Query: 561  SWRALSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCVATFFMEETELAVTILY 382
            SWRALSD+  LQ +LLKTIPP TLPQ+FKNALS PILIDIIKC  TFF E+TELAV IL 
Sbjct: 357  SWRALSDDCALQMQLLKTIPPPTLPQIFKNALSVPILIDIIKCTTTFFKEDTELAVNILD 416

Query: 381  NLTQVSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEMLAKLCLKYCPGR 217
            NL +V RFDMI++CLS+ D+++L++IW+EVFSS+ +AA+  E L++L  +YC G+
Sbjct: 417  NLAKVPRFDMIVMCLSSTDRSELWQIWEEVFSSKDIAANYIETLSQLRSRYCYGK 471


>ref|XP_008781117.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X2
            [Phoenix dactylifera]
          Length = 420

 Score =  440 bits (1131), Expect = e-120
 Identities = 244/453 (53%), Positives = 304/453 (67%), Gaps = 21/453 (4%)
 Frame = -2

Query: 1512 MAGIPSNKHNRDRTLEFQGFLNDLQDWDHYLEKDK--KLKGQAHEEKKYDYFRNS----- 1354
            MAG+ S K +RDR+LEFQGFLNDL+ WD YL KDK  K+KGQ+HE  K    RN+     
Sbjct: 1    MAGV-SGKPDRDRSLEFQGFLNDLEGWD-YLLKDKGGKMKGQSHESNKPGSLRNAGKVNE 58

Query: 1353 --------------DAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSI 1216
                          +A+S + S   +EE +PDAASEKELGNEY+KQKK+ +AIECYSRSI
Sbjct: 59   DKGPLKKVPAVEVKNAMSRMRSSFYSEEKLPDAASEKELGNEYFKQKKFPEAIECYSRSI 118

Query: 1215 ALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASM 1036
            ALSPT+VAFANRAMAY+K+K+FEEAENDCTEALNLDDRY+KAYSRRATARKELGKLKASM
Sbjct: 119  ALSPTSVAFANRAMAYLKLKRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKASM 178

Query: 1035 EDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXXX 856
            ED++FA+RL+PNNQEL+KQYTE KAL +KEI  K SG +K S QGI+ +  S+M      
Sbjct: 179  EDSEFAMRLEPNNQELKKQYTETKALYEKEIDKKISGPLKKSFQGIEGVSNSEMG----- 233

Query: 855  XXXXXXXXKIPSKPPNLMKEIEIRTTTGNRREGQQLDESLGGATPXXXXXXXXXXXXXXX 676
                                      T N R    +  +   A                 
Sbjct: 234  --------------------------TKNARGDHLVSSNSQNAAATAHGAQSKKDQDVGR 267

Query: 675  KQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPVLQARLLKTIPPT 496
            K  LKAS+Q+L             K+I  P++AY+FEVSWRALSD+  LQ +LLK+IPP 
Sbjct: 268  KHVLKASMQDLASRAASRVMATAGKSIAAPKTAYEFEVSWRALSDDCALQTQLLKSIPPP 327

Query: 495  TLPQLFKNALSAPILIDIIKCVATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKAD 316
             LPQ+FKNALS PILIDIIKC  TFF E+TELAV IL NL +V RFDM+++CLS+AD+++
Sbjct: 328  ALPQIFKNALSVPILIDIIKCTTTFFKEDTELAVNILDNLAKVPRFDMMVMCLSSADRSE 387

Query: 315  LYKIWDEVFSSQAVAAHQAEMLAKLCLKYCPGR 217
            L +IW+EVFSS+ +AA+  E L++L  +YC G+
Sbjct: 388  LQQIWEEVFSSKDIAANYIETLSRLRSRYCNGK 420


>ref|XP_012088892.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X3
            [Jatropha curcas]
          Length = 468

 Score =  433 bits (1113), Expect = e-118
 Identities = 249/472 (52%), Positives = 304/472 (64%), Gaps = 39/472 (8%)
 Frame = -2

Query: 1512 MAGIPSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-------------- 1378
            MA +P+ KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++               
Sbjct: 1    MARVPT-KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAID 59

Query: 1377 -------KYDYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRS 1219
                   ++DY RN DA+  I S    EE+  DA SEKELGNEY+KQKKYK+AIECYSRS
Sbjct: 60   SSRGSSGQHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRS 119

Query: 1218 IALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKAS 1039
            IALSPTAVA+ANRAMAY+KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S
Sbjct: 120  IALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKS 179

Query: 1038 MEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRS------- 880
            +ED++FA+RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+ GRS       
Sbjct: 180  LEDSEFALRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSETKVNGY 239

Query: 879  ----------KMXXXXXXXXXXXXXXKIPSKPPNLMKEIEIRTTTGNRREGQQLDESLGG 730
                      +               ++P K  ++ +        G+  EG Q + S   
Sbjct: 240  EVNSVPSITQRTSVSTSQKGKNEGAVEVPEKSTSVEEMENKILRVGSSIEG-QANYSYTD 298

Query: 729  ATPXXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRA 550
            A P               KQ LKASVQEL            AKNIT P SAYQFEVSWR 
Sbjct: 299  AMP-SSNADSFQRYNRMRKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWRG 357

Query: 549  LSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCVATFFMEETELAVTILYNLTQ 370
             S + VLQ RLLK + P+ LPQ+ KNALSA +LIDIIKCVATFF+++T LAV  L NL +
Sbjct: 358  FSGDRVLQTRLLKAMSPSALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLAK 417

Query: 369  VSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEMLAKLCLKYCPGRW 214
            V RFDM+I+CLSAADKADL KIWDEVF  +A     AE+L  L  KYCP +W
Sbjct: 418  VPRFDMLIMCLSAADKADLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 468


>gb|KDP23389.1| hypothetical protein JCGZ_23222 [Jatropha curcas]
          Length = 469

 Score =  432 bits (1111), Expect = e-118
 Identities = 249/473 (52%), Positives = 304/473 (64%), Gaps = 40/473 (8%)
 Frame = -2

Query: 1512 MAGIPSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-------------- 1378
            MA +P+ KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++               
Sbjct: 1    MARVPT-KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAID 59

Query: 1377 -------KYDYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRS 1219
                   ++DY RN DA+  I S    EE+  DA SEKELGNEY+KQKKYK+AIECYSRS
Sbjct: 60   SSRGSSGQHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRS 119

Query: 1218 IALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKAS 1039
            IALSPTAVA+ANRAMAY+KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S
Sbjct: 120  IALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKS 179

Query: 1038 MEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSK------ 877
            +ED++FA+RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+ GRS+      
Sbjct: 180  LEDSEFALRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSETKVNGY 239

Query: 876  ------------MXXXXXXXXXXXXXXKIPSKPPNLMKEIEIRTTTGNRREGQQLDESLG 733
                                       ++P K  ++ +        G+  EG Q + S  
Sbjct: 240  EVNSVPSITQRTSVSTSQKGKNEQGAVEVPEKSTSVEEMENKILRVGSSIEG-QANYSYT 298

Query: 732  GATPXXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWR 553
             A P               KQ LKASVQEL            AKNIT P SAYQFEVSWR
Sbjct: 299  DAMP-SSNADSFQRYNRMRKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWR 357

Query: 552  ALSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCVATFFMEETELAVTILYNLT 373
              S + VLQ RLLK + P+ LPQ+ KNALSA +LIDIIKCVATFF+++T LAV  L NL 
Sbjct: 358  GFSGDRVLQTRLLKAMSPSALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLA 417

Query: 372  QVSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEMLAKLCLKYCPGRW 214
            +V RFDM+I+CLSAADKADL KIWDEVF  +A     AE+L  L  KYCP +W
Sbjct: 418  KVPRFDMLIMCLSAADKADLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 469


>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
          Length = 1097

 Score =  432 bits (1111), Expect = e-118
 Identities = 238/470 (50%), Positives = 304/470 (64%), Gaps = 47/470 (10%)
 Frame = -2

Query: 1494 NKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEE--------------------- 1381
            +KH RD+ L+FQGFL DLQDW+  L EKDKK+K QA E+                     
Sbjct: 630  SKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGV 689

Query: 1380 -----------KKYDYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIE 1234
                       ++++Y RN DA+S ISS   TEE++PDAASEKELGNEY+KQ+K+K+AI+
Sbjct: 690  SLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAID 749

Query: 1233 CYSRSIALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELG 1054
            CYSRSIAL PTAVA+ANRAMAYIKIK+F EAE+DC EALNLDDRYIKAYSRRATARKELG
Sbjct: 750  CYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELG 809

Query: 1053 KLKASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKM 874
            K K + EDA+FA+RL+P NQE++KQY E K+L +KEI  K SGA+K+S+QG+Q++G+S +
Sbjct: 810  KFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVV 869

Query: 873  XXXXXXXXXXXXXXK--------------IPSKPPNLMKEIEIRTTTGNRREGQQLDESL 736
                                         +P+     M+E E + T    +E   L+ ++
Sbjct: 870  EVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLENAV 929

Query: 735  GGATPXXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSW 556
              +                 ++++K+S+QEL            AKNIT P SAYQFEVSW
Sbjct: 930  QNS-----GLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSW 984

Query: 555  RALSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCVATFFMEETELAVTILYNL 376
            R L  +  LQA  LK I P  LPQ+FKNALSAPILIDIIKC+ATFF+ E +LAV  L NL
Sbjct: 985  RGLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNL 1044

Query: 375  TQVSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEMLAKLCLKYC 226
            T++SRFDMII+CLS+ DK DL KIWDEVF ++A  +  A+ L KL  +YC
Sbjct: 1045 TKISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRYC 1094


>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Vitis
            vinifera]
          Length = 474

 Score =  432 bits (1111), Expect = e-118
 Identities = 238/470 (50%), Positives = 304/470 (64%), Gaps = 47/470 (10%)
 Frame = -2

Query: 1494 NKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEE--------------------- 1381
            +KH RD+ L+FQGFL DLQDW+  L EKDKK+K QA E+                     
Sbjct: 7    SKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGV 66

Query: 1380 -----------KKYDYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIE 1234
                       ++++Y RN DA+S ISS   TEE++PDAASEKELGNEY+KQ+K+K+AI+
Sbjct: 67   SLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAID 126

Query: 1233 CYSRSIALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELG 1054
            CYSRSIAL PTAVA+ANRAMAYIKIK+F EAE+DC EALNLDDRYIKAYSRRATARKELG
Sbjct: 127  CYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELG 186

Query: 1053 KLKASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKM 874
            K K + EDA+FA+RL+P NQE++KQY E K+L +KEI  K SGA+K+S+QG+Q++G+S +
Sbjct: 187  KFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVV 246

Query: 873  XXXXXXXXXXXXXXK--------------IPSKPPNLMKEIEIRTTTGNRREGQQLDESL 736
                                         +P+     M+E E + T    +E   L+ ++
Sbjct: 247  EVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLENAV 306

Query: 735  GGATPXXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSW 556
              +                 ++++K+S+QEL            AKNIT P SAYQFEVSW
Sbjct: 307  QNS-----GLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSW 361

Query: 555  RALSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCVATFFMEETELAVTILYNL 376
            R L  +  LQA  LK I P  LPQ+FKNALSAPILIDIIKC+ATFF+ E +LAV  L NL
Sbjct: 362  RGLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNL 421

Query: 375  TQVSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEMLAKLCLKYC 226
            T++SRFDMII+CLS+ DK DL KIWDEVF ++A  +  A+ L KL  +YC
Sbjct: 422  TKISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRYC 471


>ref|XP_012088891.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Jatropha curcas]
          Length = 475

 Score =  431 bits (1107), Expect = e-117
 Identities = 249/478 (52%), Positives = 304/478 (63%), Gaps = 45/478 (9%)
 Frame = -2

Query: 1512 MAGIPSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-------------- 1378
            MA +P+ KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++               
Sbjct: 1    MARVPT-KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAID 59

Query: 1377 -------KYDYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRS 1219
                   ++DY RN DA+  I S    EE+  DA SEKELGNEY+KQKKYK+AIECYSRS
Sbjct: 60   SSRGSSGQHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRS 119

Query: 1218 IALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKAS 1039
            IALSPTAVA+ANRAMAY+KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S
Sbjct: 120  IALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKS 179

Query: 1038 MEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRS------- 880
            +ED++FA+RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+ GRS       
Sbjct: 180  LEDSEFALRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSETKVNGY 239

Query: 879  ----------KMXXXXXXXXXXXXXXKIPSKPPNLMKEIEIRTTTGNRREGQQLDESLGG 730
                      +               ++P K  ++ +        G+  EG Q + S   
Sbjct: 240  EVNSVPSITQRTSVSTSQKGKNEGAVEVPEKSTSVEEMENKILRVGSSIEG-QANYSYTD 298

Query: 729  ATP------XXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQF 568
            A P                     KQ LKASVQEL            AKNIT P SAYQF
Sbjct: 299  AMPSSNADSFQIKSKLLLRYNRMRKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQF 358

Query: 567  EVSWRALSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCVATFFMEETELAVTI 388
            EVSWR  S + VLQ RLLK + P+ LPQ+ KNALSA +LIDIIKCVATFF+++T LAV  
Sbjct: 359  EVSWRGFSGDRVLQTRLLKAMSPSALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKY 418

Query: 387  LYNLTQVSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEMLAKLCLKYCPGRW 214
            L NL +V RFDM+I+CLSAADKADL KIWDEVF  +A     AE+L  L  KYCP +W
Sbjct: 419  LENLAKVPRFDMLIMCLSAADKADLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 475


>ref|XP_012088890.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Jatropha curcas]
          Length = 476

 Score =  430 bits (1105), Expect = e-117
 Identities = 249/478 (52%), Positives = 307/478 (64%), Gaps = 45/478 (9%)
 Frame = -2

Query: 1512 MAGIPSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-------------- 1378
            MA +P+ KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++               
Sbjct: 1    MARVPT-KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAID 59

Query: 1377 -------KYDYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRS 1219
                   ++DY RN DA+  I S    EE+  DA SEKELGNEY+KQKKYK+AIECYSRS
Sbjct: 60   SSRGSSGQHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRS 119

Query: 1218 IALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKAS 1039
            IALSPTAVA+ANRAMAY+KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S
Sbjct: 120  IALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKS 179

Query: 1038 MEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXX 859
            +ED++FA+RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+ GRS+      
Sbjct: 180  LEDSEFALRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSETKVNGY 239

Query: 858  XXXXXXXXXKIPS-----KPPNLMKEIEI--RTTTGNRREGQ--QLDESLGG-------- 730
                     +  S     K  N    +E+  ++T+    E +  ++  S+ G        
Sbjct: 240  EVNSVPSITQRTSVSTSQKGKNEQGAVEVPEKSTSVEEMENKILRVGSSIEGQANYSYTD 299

Query: 729  ------ATPXXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQF 568
                  A                 KQ LKASVQEL            AKNIT P SAYQF
Sbjct: 300  AMPSSNADSFQIKSKLLLRYNRMRKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQF 359

Query: 567  EVSWRALSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCVATFFMEETELAVTI 388
            EVSWR  S + VLQ RLLK + P+ LPQ+ KNALSA +LIDIIKCVATFF+++T LAV  
Sbjct: 360  EVSWRGFSGDRVLQTRLLKAMSPSALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKY 419

Query: 387  LYNLTQVSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEMLAKLCLKYCPGRW 214
            L NL +V RFDM+I+CLSAADKADL KIWDEVF  +A     AE+L  L  KYCP +W
Sbjct: 420  LENLAKVPRFDMLIMCLSAADKADLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 476


>ref|XP_009373288.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Pyrus x
            bretschneideri]
          Length = 411

 Score =  428 bits (1101), Expect = e-117
 Identities = 237/438 (54%), Positives = 297/438 (67%), Gaps = 13/438 (2%)
 Frame = -2

Query: 1500 PSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKK-----------YDYFRN 1357
            P NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++K           YDY RN
Sbjct: 4    PPNKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEKLTRDSGTSSENYDYSRN 63

Query: 1356 SDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRA 1177
             DA+  ISS L +E+++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR 
Sbjct: 64   FDAIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANRG 123

Query: 1176 MAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNN 997
            MA IKIK+F+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+N
Sbjct: 124  MACIKIKRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPHN 183

Query: 996  QELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXXXXXXXXXXXKIPSK 817
            QE+++QYTE K+L DK    K SGA+KNS+Q +Q+ G+S                    +
Sbjct: 184  QEIKRQYTEAKSLYDKSNLQKASGALKNSVQEMQKRGKSDTKVNGKGI-----------Q 232

Query: 816  PPNLMKEIEIRTTTGNRREGQQLDESLGGATPXXXXXXXXXXXXXXXKQQLKASVQEL-X 640
            P +   +I   T   +  +G   ++                       Q++KASVQEL  
Sbjct: 233  PVSSKAQITEITAVQDHDKGDNTNKK----------------------QEVKASVQELAS 270

Query: 639  XXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPVLQARLLKTIPPTTLPQLFKNALSA 460
                        KNIT P +AYQFEVSWR LS +  LQA LLK+I P+ LPQ+FKNAL+ 
Sbjct: 271  RAASKAKVVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSISPSALPQIFKNALTV 330

Query: 459  PILIDIIKCVATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLYKIWDEVFSSQ 280
            PILIDIIKCVATFF+EE ELAV  L NLT+V RFD +I+ LS+++KADL KIWDEVF + 
Sbjct: 331  PILIDIIKCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSNKADLDKIWDEVFYND 390

Query: 279  AVAAHQAEMLAKLCLKYC 226
            A     AE L  L  KYC
Sbjct: 391  ATPIEYAEKLGNLRAKYC 408


>ref|XP_009373287.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Pyrus x
            bretschneideri]
          Length = 412

 Score =  428 bits (1100), Expect = e-117
 Identities = 237/439 (53%), Positives = 297/439 (67%), Gaps = 14/439 (3%)
 Frame = -2

Query: 1500 PSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKK------------YDYFR 1360
            P NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++K            YDY R
Sbjct: 4    PPNKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEKLKTRDSGTSSENYDYSR 63

Query: 1359 NSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANR 1180
            N DA+  ISS L +E+++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR
Sbjct: 64   NFDAIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANR 123

Query: 1179 AMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPN 1000
             MA IKIK+F+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+
Sbjct: 124  GMACIKIKRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPH 183

Query: 999  NQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXXXXXXXXXXXKIPS 820
            NQE+++QYTE K+L DK    K SGA+KNS+Q +Q+ G+S                    
Sbjct: 184  NQEIKRQYTEAKSLYDKSNLQKASGALKNSVQEMQKRGKSDTKVNGKGI----------- 232

Query: 819  KPPNLMKEIEIRTTTGNRREGQQLDESLGGATPXXXXXXXXXXXXXXXKQQLKASVQEL- 643
            +P +   +I   T   +  +G   ++                       Q++KASVQEL 
Sbjct: 233  QPVSSKAQITEITAVQDHDKGDNTNKK----------------------QEVKASVQELA 270

Query: 642  XXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPVLQARLLKTIPPTTLPQLFKNALS 463
                         KNIT P +AYQFEVSWR LS +  LQA LLK+I P+ LPQ+FKNAL+
Sbjct: 271  SRAASKAKVVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSISPSALPQIFKNALT 330

Query: 462  APILIDIIKCVATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLYKIWDEVFSS 283
             PILIDIIKCVATFF+EE ELAV  L NLT+V RFD +I+ LS+++KADL KIWDEVF +
Sbjct: 331  VPILIDIIKCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSNKADLDKIWDEVFYN 390

Query: 282  QAVAAHQAEMLAKLCLKYC 226
             A     AE L  L  KYC
Sbjct: 391  DATPIEYAEKLGNLRAKYC 409


>ref|XP_010267984.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Nelumbo
            nucifera]
          Length = 484

 Score =  426 bits (1096), Expect = e-116
 Identities = 250/490 (51%), Positives = 303/490 (61%), Gaps = 60/490 (12%)
 Frame = -2

Query: 1512 MAGIPSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKK------------- 1375
            MA +P  K++RD  + FQGFLNDLQDW+  L EKDKKL+ Q  EE K             
Sbjct: 1    MARVPK-KNSRDEGMNFQGFLNDLQDWELSLKEKDKKLRAQTSEETKALPTQRVGMKNAS 59

Query: 1374 -----------------------------------YDYFRNS----------DAVSGISS 1330
                                                 Y RNS          DAV+ +SS
Sbjct: 60   QLSSEPGIGGRGRQLKEQNTAAVGRDKGPGGESPSVHYSRNSKYRFDFSRNFDAVNKLSS 119

Query: 1329 GLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRAMAYIKIKKF 1150
                 E  PDA SEKELGNEY+KQKK+ +AI+CYSRSIAL PTAVA+ANRAMAY+KIK+F
Sbjct: 120  SYLNAEDSPDATSEKELGNEYFKQKKFNEAIDCYSRSIALMPTAVAYANRAMAYLKIKRF 179

Query: 1149 EEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNNQELRKQYTE 970
            EEAE+DCTEALNLDDRYIKAYSRRATARKELGKLKA++EDA+FA+RL+PNNQEL+KQY E
Sbjct: 180  EEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKAAIEDAEFALRLEPNNQELKKQYAE 239

Query: 969  VKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXXXXXXXXXXXKIPSKPPNLMKEIE 790
             KAL DKEI  K SG  +N+IQG       +M              K PSKP  +++EI+
Sbjct: 240  SKALYDKEILKKASGIARNAIQGETAAQVDRM---------KGTDGKFPSKPSIIVQEIK 290

Query: 789  IRTTTGNRREG-QQLDESLGGATPXXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXX 613
             +TT G  R   ++ D S   AT                +++LK SVQEL          
Sbjct: 291  SKTTVGGTRSWIKESDGSQEDATLKSSADTFKGSHAVDKREELKTSVQELASRAASRAMA 350

Query: 612  XXAKNITTPQSAYQFEVSWRALSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKC 433
               KNIT P+SAY+FEVSWR LS +  LQARLLK I P TLPQLFKNALSA IL+D++ C
Sbjct: 351  EAVKNITPPKSAYEFEVSWRGLSGDRALQARLLKVISPPTLPQLFKNALSAQILVDVVSC 410

Query: 432  VATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEM 253
            +ATF MEET+LAV+ L NLT++SRF MII+CLSA ++ DL KIWDEVFS + +     E 
Sbjct: 411  IATFIMEETDLAVSFLDNLTKISRFSMIIMCLSALERDDLRKIWDEVFSHEGMGVEYRET 470

Query: 252  LAKLCLKYCP 223
            L++L  KY P
Sbjct: 471  LSRLRPKYIP 480


>ref|XP_008246007.1| PREDICTED: RNA polymerase II-associated protein 3 [Prunus mume]
          Length = 411

 Score =  426 bits (1095), Expect = e-116
 Identities = 239/445 (53%), Positives = 298/445 (66%), Gaps = 13/445 (2%)
 Frame = -2

Query: 1512 MAGIPSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQ-AHEEK-----------KY 1372
            MA  P NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q +H+EK            Y
Sbjct: 1    MARAP-NKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQDSHQEKLKTRDLGTSSGNY 59

Query: 1371 DYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVA 1192
            DY RN D+++ +SS  ++E+++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA
Sbjct: 60   DYSRNLDSINTMSSSFTSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVA 119

Query: 1191 FANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVR 1012
            +ANRAMAYIKIK F EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+EDA+FA+R
Sbjct: 120  YANRAMAYIKIKSFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDAEFALR 179

Query: 1011 LDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXXXXXXXXXXX 832
            L+P NQE++KQYTE K+L +K I  KTSGA KNS+Q +Q++G+                 
Sbjct: 180  LEPQNQEIKKQYTEAKSLYEKTILQKTSGARKNSVQEMQKVGKLDTKVNGQSIQPVSSSA 239

Query: 831  KIPSKPPNLMKEIEIRTTTGNRREGQQLDESLGGATPXXXXXXXXXXXXXXXKQQLKASV 652
            +I       M  ++  T   N                               KQ++KASV
Sbjct: 240  QITE-----MTAVQDHTKRNNTTR----------------------------KQEVKASV 266

Query: 651  QELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPVLQARLLKTIPPTTLPQLFKN 472
            QEL            A+ IT P SAYQFEVSWR L+ +   Q  LLK I P+ LPQ+FKN
Sbjct: 267  QELASRAASRVKAVAAEKITPPNSAYQFEVSWRGLAGDNAGQTSLLKAISPSALPQIFKN 326

Query: 471  ALSAPILIDIIKCVATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLYKIWDEV 292
            AL+ PIL+DIIKCVATFF+EE +LAV  L NLT+V RFD +I+ LS++D ADL KIWDEV
Sbjct: 327  ALTVPILLDIIKCVATFFIEEIDLAVNYLENLTRVPRFDTLIMFLSSSDNADLVKIWDEV 386

Query: 291  FSSQAVAAHQAEMLAKLCLKYCPGR 217
            F ++A     AE L  L  KYCP R
Sbjct: 387  FDNEATPIEYAEKLDNLHTKYCPKR 411


>ref|XP_009416301.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Musa
            acuminata subsp. malaccensis]
          Length = 412

 Score =  424 bits (1089), Expect = e-115
 Identities = 232/437 (53%), Positives = 299/437 (68%), Gaps = 8/437 (1%)
 Frame = -2

Query: 1512 MAGIPSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKKYDYFRNSDAVSG- 1339
            MAG+ S K +RDR++EF+GFLNDL+DWD  L +KD+KLKG A   KK D  +N   + G 
Sbjct: 1    MAGV-SRKPDRDRSMEFKGFLNDLKDWDDLLKDKDEKLKGHARRNKKPDSLQNPGIIDGY 59

Query: 1338 ------ISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRA 1177
                  I S    +EA+PDAASEKELGNEY+KQK++ +AIECYSRSIALSPT+VAFANRA
Sbjct: 60   KEPPRKIYSSNLNDEALPDAASEKELGNEYFKQKRFLEAIECYSRSIALSPTSVAFANRA 119

Query: 1176 MAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNN 997
            MAY+K+++FEEAENDCTEALNLDDRY+KAYSRRATARKELGKLKAS+EDADFAVRLDPN 
Sbjct: 120  MAYLKLRRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKASLEDADFAVRLDPNT 179

Query: 996  QELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXXXXXXXXXXXKIPSK 817
            QELRKQY+E+KAL +KE+  + SGA+K + +  Q                         +
Sbjct: 180  QELRKQYSEIKALYEKEVANRKSGALKEASKESQ-------------------------R 214

Query: 816  PPNLMKEIEIRTTTGNRREGQQLDESLGGATPXXXXXXXXXXXXXXXKQQLKASVQELXX 637
               L  E +I       ++   +   +  A                 K +LKAS+ ++  
Sbjct: 215  ADGLQVESKI------IQDDYLISNRVHNAAASSHKSSVVKNERVQHKHELKASLHDVAS 268

Query: 636  XXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPVLQARLLKTIPPTTLPQLFKNALSAP 457
                      AKNIT+P+SAY+FEVSWRALSD+   QA+LLK IPP TLPQ+FKNALSAP
Sbjct: 269  RAASRAVASAAKNITSPKSAYEFEVSWRALSDDSA-QAQLLKMIPPYTLPQIFKNALSAP 327

Query: 456  ILIDIIKCVATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLYKIWDEVFSSQA 277
            IL+DIIKC+ TFF E+TELA+++L N+ +V RFDMII+CLSA D +++ ++W+E+FS++ 
Sbjct: 328  ILVDIIKCIGTFFKEDTELAISLLDNMVKVPRFDMIIMCLSAKDHSEVQQVWEEIFSTRY 387

Query: 276  VAAHQAEMLAKLCLKYC 226
            +     E LA+L  KYC
Sbjct: 388  IPVAHTEALARLRPKYC 404


>ref|XP_008388472.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Malus
            domestica]
          Length = 411

 Score =  423 bits (1088), Expect = e-115
 Identities = 234/438 (53%), Positives = 294/438 (67%), Gaps = 13/438 (2%)
 Frame = -2

Query: 1500 PSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-----------KYDYFRN 1357
            P NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++            YDY RN
Sbjct: 4    PPNKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEXLTRDSGTSSGNYDYSRN 63

Query: 1356 SDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRA 1177
             DA+  ISS L +E+++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR 
Sbjct: 64   FDAIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANRG 123

Query: 1176 MAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNN 997
            MAYIKI++F+EAE+DCT ALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+N
Sbjct: 124  MAYIKIRRFQEAEDDCTXALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPHN 183

Query: 996  QELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXXXXXXXXXXXKIPSK 817
            QE++KQYTE K+L DK    K SGA+KNS+Q  Q+ G+                     +
Sbjct: 184  QEIKKQYTEAKSLYDKSNLEKASGALKNSVQEXQKRGKLDTKVNGKGI-----------Q 232

Query: 816  PPNLMKEIEIRTTTGNRREGQQLDESLGGATPXXXXXXXXXXXXXXXKQQLKASVQEL-X 640
            P +   +I   T   +  +G   ++ L                      ++KASVQEL  
Sbjct: 233  PVSXSAQITEITXVQDHTKGDNTNKKL----------------------EVKASVQELAS 270

Query: 639  XXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPVLQARLLKTIPPTTLPQLFKNALSA 460
                        KNIT P +AYQFEVSWR LS +  LQA LLK+I P+ LPQ+FKNAL+ 
Sbjct: 271  RAASKAKVVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSISPSALPQIFKNALTV 330

Query: 459  PILIDIIKCVATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLYKIWDEVFSSQ 280
            PILIDII CVATFF+EE ELAV  L NLT+V RFD +I+ LS+++KADL KIWDEVF ++
Sbjct: 331  PILIDIINCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSNKADLDKIWDEVFYNE 390

Query: 279  AVAAHQAEMLAKLCLKYC 226
            A     AE L  L  KYC
Sbjct: 391  ATPIEYAEKLGNLRAKYC 408


>ref|XP_008388471.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Malus
            domestica]
          Length = 412

 Score =  423 bits (1087), Expect = e-115
 Identities = 234/439 (53%), Positives = 294/439 (66%), Gaps = 14/439 (3%)
 Frame = -2

Query: 1500 PSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK------------KYDYFR 1360
            P NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++             YDY R
Sbjct: 4    PPNKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEXLKTRDSGTSSGNYDYSR 63

Query: 1359 NSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANR 1180
            N DA+  ISS L +E+++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR
Sbjct: 64   NFDAIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANR 123

Query: 1179 AMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPN 1000
             MAYIKI++F+EAE+DCT ALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+
Sbjct: 124  GMAYIKIRRFQEAEDDCTXALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPH 183

Query: 999  NQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXXXXXXXXXXXKIPS 820
            NQE++KQYTE K+L DK    K SGA+KNS+Q  Q+ G+                     
Sbjct: 184  NQEIKKQYTEAKSLYDKSNLEKASGALKNSVQEXQKRGKLDTKVNGKGI----------- 232

Query: 819  KPPNLMKEIEIRTTTGNRREGQQLDESLGGATPXXXXXXXXXXXXXXXKQQLKASVQEL- 643
            +P +   +I   T   +  +G   ++ L                      ++KASVQEL 
Sbjct: 233  QPVSXSAQITEITXVQDHTKGDNTNKKL----------------------EVKASVQELA 270

Query: 642  XXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPVLQARLLKTIPPTTLPQLFKNALS 463
                         KNIT P +AYQFEVSWR LS +  LQA LLK+I P+ LPQ+FKNAL+
Sbjct: 271  SRAASKAKVVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSISPSALPQIFKNALT 330

Query: 462  APILIDIIKCVATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLYKIWDEVFSS 283
             PILIDII CVATFF+EE ELAV  L NLT+V RFD +I+ LS+++KADL KIWDEVF +
Sbjct: 331  VPILIDIINCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSNKADLDKIWDEVFYN 390

Query: 282  QAVAAHQAEMLAKLCLKYC 226
            +A     AE L  L  KYC
Sbjct: 391  EATPIEYAEKLGNLRAKYC 409


>ref|XP_007031158.1| Tetratricopeptide repeat-like superfamily protein, putative isoform 1
            [Theobroma cacao] gi|508719763|gb|EOY11660.1|
            Tetratricopeptide repeat-like superfamily protein,
            putative isoform 1 [Theobroma cacao]
          Length = 468

 Score =  423 bits (1087), Expect = e-115
 Identities = 240/471 (50%), Positives = 303/471 (64%), Gaps = 47/471 (9%)
 Frame = -2

Query: 1497 SNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEE-------------------- 1381
            ++KH+RD+ L+FQGFLN+LQDW+  L EKDK +K QA ++                    
Sbjct: 2    ASKHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLTNEKGRPTGKSSLIDSS 61

Query: 1380 ----KKYDYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIA 1213
                ++YDY +N D  + +SS   TEE +PDAASEKELGNEY+KQKK+K+AI+CYSRSI 
Sbjct: 62   TTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIG 121

Query: 1212 LSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASME 1033
            LSPTAVA ANRAMAY+KIKKF+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+E
Sbjct: 122  LSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 181

Query: 1032 DADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSK-------- 877
            D +FA+RL+PNNQE++KQ+ E K+L +KEI  K SG ++ S+Q  QE+G+S+        
Sbjct: 182  DTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSETKENGLGM 241

Query: 876  -------------MXXXXXXXXXXXXXXKIPSKPPNLMKEIEIRTT-TGNRREGQQLDES 739
                                        K P K     + I  R T  G+R++G QLD  
Sbjct: 242  HSASNSTQRTGVATVQGYQTKVSEYDKQKKPEKGSVTSEGIGDRNTLAGSRKDGTQLDSG 301

Query: 738  LGGATPXXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVS 559
            + G                  K +LKASVQEL            AKNI+ P +AYQFEVS
Sbjct: 302  IVG-------LESIKKNNRTRKPELKASVQELASLAATRAMAEAAKNISPPNTAYQFEVS 354

Query: 558  WRALSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCVATFFMEETELAVTILYN 379
            WRALS +  LQA LLK   P+ LPQ+FKNALSA +L+DIIKCVATFF EE +LA+  L N
Sbjct: 355  WRALSGDRALQAHLLKVTSPSALPQIFKNALSASMLVDIIKCVATFFREEVDLAIKYLEN 414

Query: 378  LTQVSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEMLAKLCLKYC 226
            LT+V RFDM+I+CLS+ +KADL K+WD+VF ++A     AE+L  L   YC
Sbjct: 415  LTKVPRFDMLIMCLSSTEKADLLKVWDDVFCNEATPIEWAEILDNLRSVYC 465


>gb|KHG26705.1| RNA polymerase II-associated 3 [Gossypium arboreum]
          Length = 472

 Score =  420 bits (1079), Expect = e-114
 Identities = 237/467 (50%), Positives = 302/467 (64%), Gaps = 51/467 (10%)
 Frame = -2

Query: 1497 SNKHNRDRTLEFQGFLNDLQDWDHYLE---KDKKLKGQAH-------------------- 1387
            ++KH+RD+ ++FQGFLNDLQDW+  L+   K+KK+  QA                     
Sbjct: 2    ASKHSRDQAMDFQGFLNDLQDWELSLKDKGKNKKMTSQASGKEQLNITEKGRPTGKRSLN 61

Query: 1386 ------EEKKYDYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYS 1225
                    ++YDY +N D  S +S+   TEE +PDAASEKELGNEY+KQKK+K+AI+CYS
Sbjct: 62   SSSSTTSSEQYDYLKNYDKWSNLSTSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYS 121

Query: 1224 RSIALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLK 1045
            RSIALSPTAVA+ANRAMAY+KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK
Sbjct: 122  RSIALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 181

Query: 1044 ASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRS----- 880
             S+EDA+F +RL+PN+Q+++KQ+ E KAL +KEI  K SG +K S+QG QE+G+S     
Sbjct: 182  ESIEDAEFGLRLEPNSQDMKKQHAEFKALYEKEILQKASGVIKKSMQGAQEVGKSATIDN 241

Query: 879  ----------------KMXXXXXXXXXXXXXXKIPSKPPNLMKEIEIR-TTTGNRREGQQ 751
                                            K P K    ++EI  R T+ GN  +G Q
Sbjct: 242  GLGMHTMSDSTQRKGIAAAQGSQTKVSEIDKQKKPEKGSVTLEEIGKRNTSAGNTADGTQ 301

Query: 750  LDESLGGATPXXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQ 571
            LD  + G                  KQ+LKASVQ+L            AKNI+ P +AYQ
Sbjct: 302  LDVEIAG-------PENIKRNTKTRKQELKASVQDLAFRAASRAMAEAAKNISPPNTAYQ 354

Query: 570  FEVSWRALSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCVATFFMEETELAVT 391
            FEVSWRALS + +LQA LLK   P+ LPQ+FKNA+SA +L+DI+KCVATFF E+ +LA+ 
Sbjct: 355  FEVSWRALSGDRLLQAHLLKVTSPSALPQIFKNAMSASMLVDIVKCVATFFREDVDLAIK 414

Query: 390  ILYNLTQVSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEML 250
             L NLT+V RFDM+IL LS  DKADL K+WDEVF ++A A   AE+L
Sbjct: 415  YLENLTKVPRFDMLILFLSPTDKADLLKVWDEVFCNEASAVECAEIL 461


>ref|XP_012434281.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Gossypium raimondii] gi|763778334|gb|KJB45457.1|
            hypothetical protein B456_007G306700 [Gossypium
            raimondii]
          Length = 472

 Score =  416 bits (1070), Expect = e-113
 Identities = 236/465 (50%), Positives = 299/465 (64%), Gaps = 51/465 (10%)
 Frame = -2

Query: 1491 KHNRDRTLEFQGFLNDLQDWDHYLE---KDKKLKGQAH---------------------- 1387
            KH+RD+ ++FQGFLNDLQDW+  L+   K+KK+  QA                       
Sbjct: 4    KHSRDQAMDFQGFLNDLQDWELSLKDKGKNKKMTSQASGKEQLNITEKGRPTGKRSLNNS 63

Query: 1386 ----EEKKYDYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRS 1219
                  ++YDY +N D  S +S+   TEE +PDAASEKELGNEY+KQKK+K+AI+CYSRS
Sbjct: 64   SSTTSSEQYDYLKNYDKRSNLSTSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRS 123

Query: 1218 IALSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKAS 1039
            IALSPTAVA+ANRAMAY+KI+KF+EAE+DC+EALNLDDRYIKAYSRRATARKELGKLK S
Sbjct: 124  IALSPTAVAYANRAMAYLKIRKFQEAEDDCSEALNLDDRYIKAYSRRATARKELGKLKES 183

Query: 1038 MEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRS------- 880
            +EDA+F +RL+PNNQ+++KQ+ E KAL +KEI  K SG +K S+QG QE+G+S       
Sbjct: 184  IEDAEFGLRLEPNNQDMKKQHAEFKALYEKEILQKASGVIKKSMQGAQEVGKSATIDNGL 243

Query: 879  --------------KMXXXXXXXXXXXXXXKIPSKPPNLMKEIEIR-TTTGNRREGQQLD 745
                                          K P K    ++EI  R T+ GN  +G QLD
Sbjct: 244  GMHTMSDSTQRKGIAAVQGSQTKVSECDKQKKPEKGSVTLEEIGKRNTSAGNTADGTQLD 303

Query: 744  ESLGGATPXXXXXXXXXXXXXXXKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFE 565
              + G                  KQ+LKASVQ+L            AK+I+ P +AYQFE
Sbjct: 304  AEIAG-------PENIKRDTKSRKQELKASVQDLASRAASRAMAEAAKSISPPSTAYQFE 356

Query: 564  VSWRALSDEPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCVATFFMEETELAVTIL 385
            VSWRALS +  LQA LLK   P+ LPQ+FKNA+SA +L+DI+KCVATFF E+ +LA+  L
Sbjct: 357  VSWRALSGDRSLQAHLLKVTSPSALPQIFKNAMSASMLVDIVKCVATFFREDVDLAIKYL 416

Query: 384  YNLTQVSRFDMIILCLSAADKADLYKIWDEVFSSQAVAAHQAEML 250
             NLT+V RFDM+IL LS  DKADL K+WDEVF ++A A   AE+L
Sbjct: 417  ENLTKVPRFDMLILFLSPTDKADLLKVWDEVFCNEASAIECAEIL 461


>ref|XP_009416309.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X5 [Musa
            acuminata subsp. malaccensis]
          Length = 408

 Score =  416 bits (1070), Expect = e-113
 Identities = 231/437 (52%), Positives = 297/437 (67%), Gaps = 8/437 (1%)
 Frame = -2

Query: 1512 MAGIPSNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKKYDYFRNSDAVSG- 1339
            MAG+ S K +RDR++EF+GFLNDL+DWD  L +KD+KLKG A   KK     N   + G 
Sbjct: 1    MAGV-SRKPDRDRSMEFKGFLNDLKDWDDLLKDKDEKLKGHARRNKK----PNPGIIDGY 55

Query: 1338 ------ISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRA 1177
                  I S    +EA+PDAASEKELGNEY+KQK++ +AIECYSRSIALSPT+VAFANRA
Sbjct: 56   KEPPRKIYSSNLNDEALPDAASEKELGNEYFKQKRFLEAIECYSRSIALSPTSVAFANRA 115

Query: 1176 MAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNN 997
            MAY+K+++FEEAENDCTEALNLDDRY+KAYSRRATARKELGKLKAS+EDADFAVRLDPN 
Sbjct: 116  MAYLKLRRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKASLEDADFAVRLDPNT 175

Query: 996  QELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXXXXXXXXXXXKIPSK 817
            QELRKQY+E+KAL +KE+  + SGA+K + +  Q                         +
Sbjct: 176  QELRKQYSEIKALYEKEVANRKSGALKEASKESQ-------------------------R 210

Query: 816  PPNLMKEIEIRTTTGNRREGQQLDESLGGATPXXXXXXXXXXXXXXXKQQLKASVQELXX 637
               L  E +I       ++   +   +  A                 K +LKAS+ ++  
Sbjct: 211  ADGLQVESKI------IQDDYLISNRVHNAAASSHKSSVVKNERVQHKHELKASLHDVAS 264

Query: 636  XXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPVLQARLLKTIPPTTLPQLFKNALSAP 457
                      AKNIT+P+SAY+FEVSWRALSD+   QA+LLK IPP TLPQ+FKNALSAP
Sbjct: 265  RAASRAVASAAKNITSPKSAYEFEVSWRALSDDSA-QAQLLKMIPPYTLPQIFKNALSAP 323

Query: 456  ILIDIIKCVATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLYKIWDEVFSSQA 277
            IL+DIIKC+ TFF E+TELA+++L N+ +V RFDMII+CLSA D +++ ++W+E+FS++ 
Sbjct: 324  ILVDIIKCIGTFFKEDTELAISLLDNMVKVPRFDMIIMCLSAKDHSEVQQVWEEIFSTRY 383

Query: 276  VAAHQAEMLAKLCLKYC 226
            +     E LA+L  KYC
Sbjct: 384  IPVAHTEALARLRPKYC 400


>ref|XP_007031161.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
            isoform 4 [Theobroma cacao] gi|508719766|gb|EOY11663.1|
            Tetratricopeptide repeat (TPR)-like superfamily protein,
            putative isoform 4 [Theobroma cacao]
          Length = 421

 Score =  416 bits (1070), Expect = e-113
 Identities = 231/449 (51%), Positives = 294/449 (65%), Gaps = 25/449 (5%)
 Frame = -2

Query: 1497 SNKHNRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEE-------------------- 1381
            ++KH+RD+ L+FQGFLN+LQDW+  L EKDK +K QA ++                    
Sbjct: 2    ASKHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLTNEKGRPTGKSSLIDSS 61

Query: 1380 ----KKYDYFRNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIA 1213
                ++YDY +N D  + +SS   TEE +PDAASEKELGNEY+KQKK+K+AI+CYSRSI 
Sbjct: 62   TTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIG 121

Query: 1212 LSPTAVAFANRAMAYIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASME 1033
            LSPTAVA ANRAMAY+KIKKF+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+E
Sbjct: 122  LSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 181

Query: 1032 DADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELGRSKMXXXXXXX 853
            D +FA+RL+PNNQE++KQ+ E K+L +KEI  K SG ++ S+Q  QE+G+S+        
Sbjct: 182  DTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSETKENGLGM 241

Query: 852  XXXXXXXKIPSKPPNLMKEIEIRTTTGNRREGQQLDESLGGATPXXXXXXXXXXXXXXXK 673
                          N  +   + T      +G Q  ++     P                
Sbjct: 242  ----------HSASNSTQRTGVATV-----QGYQTKKNNRTRKP---------------- 270

Query: 672  QQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDEPVLQARLLKTIPPTT 493
             +LKASVQEL            AKNI+ P +AYQFEVSWRALS +  LQA LLK   P+ 
Sbjct: 271  -ELKASVQELASLAATRAMAEAAKNISPPNTAYQFEVSWRALSGDRALQAHLLKVTSPSA 329

Query: 492  LPQLFKNALSAPILIDIIKCVATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADL 313
            LPQ+FKNALSA +L+DIIKCVATFF EE +LA+  L NLT+V RFDM+I+CLS+ +KADL
Sbjct: 330  LPQIFKNALSASMLVDIIKCVATFFREEVDLAIKYLENLTKVPRFDMLIMCLSSTEKADL 389

Query: 312  YKIWDEVFSSQAVAAHQAEMLAKLCLKYC 226
             K+WD+VF ++A     AE+L  L   YC
Sbjct: 390  LKVWDDVFCNEATPIEWAEILDNLRSVYC 418