BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00009332
         (1901 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF,...   541   e-151
ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF,...   538   e-150
ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF,...   536   e-149
ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF,...   521   e-144
ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF,...   508   e-141
gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Ambore...   505   e-140
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   494   e-136
gb|AKC88770.1| sigma factor [Francoa sonchifolia]                     471   e-130
gb|AKC88774.1| sigma factor [Melianthus villosus]                     460   e-126
gb|KHG05515.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   457   e-125
ref|XP_012443171.1| PREDICTED: RNA polymerase sigma factor sigF,...   456   e-125
ref|XP_012443173.1| PREDICTED: RNA polymerase sigma factor sigF,...   456   e-125
ref|XP_012443172.1| PREDICTED: RNA polymerase sigma factor sigF,...   455   e-125
ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF,...   448   e-123
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   447   e-122
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              447   e-122
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   444   e-122
ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF,...   444   e-121
ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF,...   444   e-121
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   443   e-121

>ref|XP_010241844.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 565

 Score =  541 bits (1394), Expect = e-151
 Identities = 301/557 (54%), Positives = 369/557 (66%), Gaps = 4/557 (0%)
 Frame = -3

Query: 1734 SSSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITEVKET----LDWR 1567
            SSSV ++HEQA P+V+ M TTSI  HFPA  L QEQ DD RP L I    +T    LD R
Sbjct: 24   SSSVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRR 83

Query: 1566 RMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATEK 1387
            ++   V + +EKKS Q  +Y + FERQ LYWPGLWYL        K +L   T+S A   
Sbjct: 84   KLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGT 143

Query: 1386 AKTVGTKPIKQSSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1207
             K V            +R  D L+                                    
Sbjct: 144  VKNVD-----------VRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEP 192

Query: 1206 XXXXDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDRDRKISSKNFD 1027
                +  +P+ EE  V              +P+ PKV +    + R +D  +KI  + FD
Sbjct: 193  RNLAN-KIPLREEVAVRSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH-EGFD 249

Query: 1026 PSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAV 847
             +DPLRLFLWGPETK+LLT KEE +L V +QEL++LEEVKQ+LQ QF REPTLVEWAEAV
Sbjct: 250  TNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAV 309

Query: 846  GMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEK 667
            GM C+ LQS LHSGNSSREK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMKSLEK
Sbjct: 310  GMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEK 369

Query: 666  FKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPT 487
            FKP+ GCRF+TY+YWWIRQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEGH PT
Sbjct: 370  FKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPT 429

Query: 486  NEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQL 307
            NEELA+RVGI VEKLE +  S R P+S+QQ VW D+  TFQEITAD E E P++   KQL
Sbjct: 430  NEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQL 489

Query: 306  MRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKL 127
            MRRHVRNL+ +L P+ER+IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRAL KL
Sbjct: 490  MRRHVRNLISILPPKERRIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRALHKL 548

Query: 126  KNHLSSEGFEAYVNLLI 76
            K  LSS+G  AY +LL+
Sbjct: 549  KQCLSSQGLGAYADLLV 565


>ref|XP_010241843.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 568

 Score =  538 bits (1385), Expect = e-150
 Identities = 301/561 (53%), Positives = 370/561 (65%), Gaps = 6/561 (1%)
 Frame = -3

Query: 1740 SLSSSVPI--IHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITEVKET---- 1579
            S SS +P+  +HEQA P+V+ M TTSI  HFPA  L QEQ DD RP L I    +T    
Sbjct: 23   SSSSGMPVTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAM 82

Query: 1578 LDWRRMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESL 1399
            LD R++   V + +EKKS Q  +Y + FERQ LYWPGLWYL        K +L   T+S 
Sbjct: 83   LDRRKLEDKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQST 142

Query: 1398 ATEKAKTVGTKPIKQSSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1219
            A    K V            +R  D L+                                
Sbjct: 143  AAGTVKNVD-----------VRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLP 191

Query: 1218 XXXXXXXXDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDRDRKISS 1039
                    +  +P+ EE  V              +P+ PKV +    + R +D  +KI  
Sbjct: 192  DLEPRNLAN-KIPLREEVAVRSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH- 248

Query: 1038 KNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEW 859
            + FD +DPLRLFLWGPETK+LLT KEE +L V +QEL++LEEVKQ+LQ QF REPTLVEW
Sbjct: 249  EGFDTNDPLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEW 308

Query: 858  AEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMK 679
            AEAVGM C+ LQS LHSGNSSREK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMK
Sbjct: 309  AEAVGMTCQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMK 368

Query: 678  SLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG 499
            SLEKFKP+ GCRF+TY+YWWIRQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEG
Sbjct: 369  SLEKFKPQAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEG 428

Query: 498  HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISA 319
            H PTNEELA+RVGI VEKLE +  S R P+S+QQ VW D+  TFQEITAD E E P++  
Sbjct: 429  HHPTNEELAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCV 488

Query: 318  TKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRA 139
             KQLMRRHVRNL+ +L P+ER+IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRA
Sbjct: 489  AKQLMRRHVRNLISILPPKERRIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRA 547

Query: 138  LDKLKNHLSSEGFEAYVNLLI 76
            L KLK  LSS+G  AY +LL+
Sbjct: 548  LHKLKQCLSSQGLGAYADLLV 568


>ref|XP_010241845.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 540

 Score =  536 bits (1382), Expect = e-149
 Identities = 298/554 (53%), Positives = 366/554 (66%), Gaps = 4/554 (0%)
 Frame = -3

Query: 1725 VPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITEVKET----LDWRRMN 1558
            V ++HEQA P+V+ M TTSI  HFPA  L QEQ DD RP L I    +T    LD R++ 
Sbjct: 2    VTLLHEQANPIVVSMPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLE 61

Query: 1557 IDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATEKAKT 1378
              V + +EKKS Q  +Y + FERQ LYWPGLWYL        K +L   T+S A    K 
Sbjct: 62   DKVHLYEEKKSCQPDRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVKN 121

Query: 1377 VGTKPIKQSSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1198
            V            +R  D L+                                       
Sbjct: 122  VD-----------VRPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNL 170

Query: 1197 XDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDRDRKISSKNFDPSD 1018
             +  +P+ EE  V              +P+ PKV +    + R +D  +KI  + FD +D
Sbjct: 171  AN-KIPLREEVAVRSKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH-EGFDTND 227

Query: 1017 PLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAVGMN 838
            PLRLFLWGPETK+LLT KEE +L V +QEL++LEEVKQ+LQ QF REPTLVEWAEAVGM 
Sbjct: 228  PLRLFLWGPETKQLLTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMT 287

Query: 837  CRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKP 658
            C+ LQS LHSGNSSREK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMKSLEKFKP
Sbjct: 288  CQSLQSILHSGNSSREKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKP 347

Query: 657  EVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPTNEE 478
            + GCRF+TY+YWWIRQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEGH PTNEE
Sbjct: 348  QAGCRFATYAYWWIRQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEE 407

Query: 477  LARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLMRR 298
            LA+RVGI VEKLE +  S R P+S+QQ VW D+  TFQEITAD E E P++   KQLMRR
Sbjct: 408  LAKRVGITVEKLERLFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRR 467

Query: 297  HVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKNH 118
            HVRNL+ +L P+ER+IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRAL KLK  
Sbjct: 468  HVRNLISILPPKERRIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRALHKLKQC 526

Query: 117  LSSEGFEAYVNLLI 76
            LSS+G  AY +LL+
Sbjct: 527  LSSQGLGAYADLLV 540


>ref|XP_010241846.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X4
            [Nelumbo nucifera]
          Length = 525

 Score =  521 bits (1341), Expect = e-144
 Identities = 291/540 (53%), Positives = 355/540 (65%), Gaps = 4/540 (0%)
 Frame = -3

Query: 1683 MQTTSIDCHFPALALCQEQCDDFRPPLHITEVKET----LDWRRMNIDVSVCKEKKSYQY 1516
            M TTSI  HFPA  L QEQ DD RP L I    +T    LD R++   V + +EKKS Q 
Sbjct: 1    MPTTSITRHFPASVLLQEQRDDIRPFLQIIREDKTSQAMLDRRKLEDKVHLYEEKKSCQP 60

Query: 1515 HQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATEKAKTVGTKPIKQSSSNPM 1336
             +Y + FERQ LYWPGLWYL        K +L   T+S A    K V            +
Sbjct: 61   DRYWEGFERQLLYWPGLWYLLPSLYKGEKPLLSMVTQSTAAGTVKNVD-----------V 109

Query: 1335 RQWDGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVMVPIEEEAIVX 1156
            R  D L+                                        +  +P+ EE  V 
Sbjct: 110  RPCDALELAKKAVLASKQAASLAKDYELFGADSHESFLPDLEPRNLAN-KIPLREEVAVR 168

Query: 1155 XXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDRDRKISSKNFDPSDPLRLFLWGPETKEL 976
                         +P+ PKV +    + R +D  +KI  + FD +DPLRLFLWGPETK+L
Sbjct: 169  SKRLLERQSKRRWIPR-PKVVVSEASTSRKSDIHKKIH-EGFDTNDPLRLFLWGPETKQL 226

Query: 975  LTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSS 796
            LT KEE +L V +QEL++LEEVKQ+LQ QF REPTLVEWAEAVGM C+ LQS LHSGNSS
Sbjct: 227  LTPKEESELFVHVQELIRLEEVKQRLQSQFDREPTLVEWAEAVGMTCQSLQSILHSGNSS 286

Query: 795  REKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWI 616
            REK+IYAN RLVVHVAK +Q +GL+LQDLLQEGSMGLMKSLEKFKP+ GCRF+TY+YWWI
Sbjct: 287  REKIIYANFRLVVHVAKHYQGQGLNLQDLLQEGSMGLMKSLEKFKPQAGCRFATYAYWWI 346

Query: 615  RQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPTNEELARRVGIRVEKLEM 436
            RQ IR+AI QNSR IRLPENVY+LL+Q++  ++LFIQEGH PTNEELA+RVGI VEKLE 
Sbjct: 347  RQAIRKAIFQNSRTIRLPENVYSLLSQVKKAKKLFIQEGHHPTNEELAKRVGITVEKLER 406

Query: 435  VLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLMRRHVRNLLCVLSPRER 256
            +  S R P+S+QQ VW D+  TFQEITAD E E P++   KQLMRRHVRNL+ +L P+ER
Sbjct: 407  LFMSTRMPLSIQQPVWADQDTTFQEITADTEVEKPDLCVAKQLMRRHVRNLISILPPKER 466

Query: 255  QIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGFEAYVNLLI 76
            +IIR+R+GI++  + K+L  IG +FGLSKERVRQLESRAL KLK  LSS+G  AY +LL+
Sbjct: 467  RIIRMRYGIEN-NEPKSLQEIGSIFGLSKERVRQLESRALHKLKQCLSSQGLGAYADLLV 525


>ref|XP_011624483.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Amborella
            trichopoda]
          Length = 581

 Score =  508 bits (1308), Expect = e-141
 Identities = 282/561 (50%), Positives = 355/561 (63%), Gaps = 9/561 (1%)
 Frame = -3

Query: 1734 SSSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITE----VKETLDWR 1567
            SSSV    +QA      + TTS   HFPA  +  EQ DD R P    +     +E +D  
Sbjct: 28   SSSVLTSPDQAPLTATMLSTTSAVRHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRA 87

Query: 1566 RMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQIL--PSSTESLAT 1393
            R  +  S+  E K+++  QYLK FERQ LYWP LWYLS PS    K +L  P   + L T
Sbjct: 88   RTEVYASIGAETKNFEIDQYLKDFERQLLYWPALWYLS-PSRILPKSLLSLPFQCKPLET 146

Query: 1392 EKAKTVGTKPIKQ---SSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1222
            +    +     KQ   SS NPM      D                               
Sbjct: 147  DIESEIKESRKKQTNCSSLNPM------DVLVLAKRAVMASKAAAALVEHSDLTVGNPDG 200

Query: 1221 XXXXXXXXXDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDRDRKIS 1042
                     ++ + + +E +                 + PK     + +  I  +  K+ 
Sbjct: 201  DISPCSGLKEICIQVPDEDMRTTIRSKRHLERQIKRRRVPKKLKDFSANFEIGKKPEKVK 260

Query: 1041 SKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVE 862
            +K+FDP+DPLR FLWGP TK+LLT KEE +L VKIQ+LM++EEVK++L++QFG EPT+VE
Sbjct: 261  NKSFDPNDPLRFFLWGPITKQLLTEKEESELFVKIQDLMRVEEVKKELEMQFGCEPTVVE 320

Query: 861  WAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLM 682
            WA A GM+   LQSC+H G  SREKMIYAN RLVVHVAK +Q RGLS+QDLLQEGS+GLM
Sbjct: 321  WARAAGMSYGSLQSCIHFGRKSREKMIYANFRLVVHVAKNYQGRGLSIQDLLQEGSVGLM 380

Query: 681  KSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQE 502
            KSLEKFKP+ GCRFSTY+YWWIRQ IR+++ QNSR IRLPENVY LLT+I+N RRL+ QE
Sbjct: 381  KSLEKFKPKTGCRFSTYAYWWIRQAIRKSLFQNSRTIRLPENVYGLLTKIKNARRLYFQE 440

Query: 501  GHQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEIS 322
            GH+PTNEELA+RVGI V+KLE V   ++ PVS+QQ VW D+ VT QEITADP+ E PE +
Sbjct: 441  GHRPTNEELAQRVGITVDKLETVRVFSKLPVSIQQPVWSDQDVTIQEITADPKVETPEKN 500

Query: 321  ATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESR 142
              KQLMRRHVRNLL +L+PRERQ+I LRFGIQ G + K+LS IG MF +SKER+RQ+ES+
Sbjct: 501  VAKQLMRRHVRNLLSLLNPRERQVINLRFGIQ-GRERKSLSEIGGMFNVSKERIRQVESK 559

Query: 141  ALDKLKNHLSSEGFEAYVNLL 79
            AL+KLKN   ++G E Y  LL
Sbjct: 560  ALEKLKNCTQTQGLEVYAELL 580


>gb|ERM94834.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  505 bits (1300), Expect = e-140
 Identities = 278/553 (50%), Positives = 351/553 (63%), Gaps = 9/553 (1%)
 Frame = -3

Query: 1710 EQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITE----VKETLDWRRMNIDVSV 1543
            +QA      + TTS   HFPA  +  EQ DD R P    +     +E +D  R  +  S+
Sbjct: 28   DQAPLTATMLSTTSAVRHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTEVYASI 87

Query: 1542 CKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQIL--PSSTESLATEKAKTVGT 1369
              E K+++  QYLK FERQ LYWP LWYLS PS    K +L  P   + L T+    +  
Sbjct: 88   GAETKNFEIDQYLKDFERQLLYWPALWYLS-PSRILPKSLLSLPFQCKPLETDIESEIKE 146

Query: 1368 KPIKQ---SSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1198
               KQ   SS NPM      D                                       
Sbjct: 147  SRKKQTNCSSLNPM------DVLVLAKRAVMASKAAAALVEHSDLTVGNPDGDISPCSGL 200

Query: 1197 XDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDRDRKISSKNFDPSD 1018
             ++ + + +E +                 + PK     + +  I  +  K+ +K+FDP+D
Sbjct: 201  KEICIQVPDEDMRTTIRSKRHLERQIKRRRVPKKLKDFSANFEIGKKPEKVKNKSFDPND 260

Query: 1017 PLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAVGMN 838
            PLR FLWGP TK+LLT KEE +L VKIQ+LM++EEVK++L++QFG EPT+VEWA A GM+
Sbjct: 261  PLRFFLWGPITKQLLTEKEESELFVKIQDLMRVEEVKKELEMQFGCEPTVVEWARAAGMS 320

Query: 837  CRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKP 658
               LQSC+H G  SREKMIYAN RLVVHVAK +Q RGLS+QDLLQEGS+GLMKSLEKFKP
Sbjct: 321  YGSLQSCIHFGRKSREKMIYANFRLVVHVAKNYQGRGLSIQDLLQEGSVGLMKSLEKFKP 380

Query: 657  EVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEGHQPTNEE 478
            + GCRFSTY+YWWIRQ IR+++ QNSR IRLPENVY LLT+I+N RRL+ QEGH+PTNEE
Sbjct: 381  KTGCRFSTYAYWWIRQAIRKSLFQNSRTIRLPENVYGLLTKIKNARRLYFQEGHRPTNEE 440

Query: 477  LARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLMRR 298
            LA+RVGI V+KLE V   ++ PVS+QQ VW D+ VT QEITADP+ E PE +  KQLMRR
Sbjct: 441  LAQRVGITVDKLETVRVFSKLPVSIQQPVWSDQDVTIQEITADPKVETPEKNVAKQLMRR 500

Query: 297  HVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKNH 118
            HVRNLL +L+PRERQ+I LRFGIQ G + K+LS IG MF +SKER+RQ+ES+AL+KLKN 
Sbjct: 501  HVRNLLSLLNPRERQVINLRFGIQ-GRERKSLSEIGGMFNVSKERIRQVESKALEKLKNC 559

Query: 117  LSSEGFEAYVNLL 79
              ++G E Y  LL
Sbjct: 560  TQTQGLEVYAELL 572


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  494 bits (1272), Expect = e-136
 Identities = 280/565 (49%), Positives = 367/565 (64%), Gaps = 12/565 (2%)
 Frame = -3

Query: 1734 SSSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITEVKE------TLD 1573
            SSSV + HEQAAP    +  TS+  HFP   L QEQ DD+RP   +   KE        D
Sbjct: 29   SSSVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATD 88

Query: 1572 WRRMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLAT 1393
             +++    S+ +E  S  + Q    FE++ L WP L  L S   +E      S+ +S+A 
Sbjct: 89   KQQIENGASLNEENASNNFGQL--GFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAA 146

Query: 1392 EKAKTVGTKP-----IKQSSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1228
            +  + V  +P     + + + +  +Q   L                              
Sbjct: 147  DTKEIVDVEPSNIVALAKKALSASKQAASLSEDLKLDLDDSLSNSLGSANSCT------- 199

Query: 1227 XXXXXXXXXXXDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDRDRK 1048
                          +P+E+E +V                  PKV +    S R TD  RK
Sbjct: 200  --------------LPVEKEEVVTVRSTRRLERQSKRRRVQPKVTIRETYSSRRTDVRRK 245

Query: 1047 ISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTL 868
            +S + FDP+DPLRLFLWGPETK+LLTAKEE +LS ++Q LM+LE+VK KLQ QFGREPTL
Sbjct: 246  LS-EGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSKLQSQFGREPTL 304

Query: 867  VEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMG 688
            VEWAEA+G+ C  LQ+ LHSGNSSR+K+IYAN R+VVH+AKQ+Q+RGLSLQDLLQEGSMG
Sbjct: 305  VEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLSLQDLLQEGSMG 364

Query: 687  LMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFI 508
            LMKS+E+FKP+VGCRF+TY+YWWIRQTIR++I+Q+SR +RLPENV+ LL+++ + ++ +I
Sbjct: 365  LMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKVLDAKKSYI 424

Query: 507  QEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIP 331
            +EG H P+ EELARRVGI VEKL+ +L + R P+SMQQSVW D+ +TFQE+T D   EIP
Sbjct: 425  REGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVTPDTGIEIP 484

Query: 330  EISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQL 151
            ++S  KQLMR+HVRNLL VLSPRER II+LRFGI++  +  +LS IG+MFGLSKERVRQL
Sbjct: 485  DVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKE-NSLSEIGNMFGLSKERVRQL 543

Query: 150  ESRALDKLKNHLSSEGFEAYVNLLI 76
            ESRAL KLK  L+  G  AYV+LL+
Sbjct: 544  ESRALYKLKQCLNKHGLGAYVDLLV 568


>gb|AKC88770.1| sigma factor [Francoa sonchifolia]
          Length = 549

 Score =  471 bits (1212), Expect = e-130
 Identities = 275/555 (49%), Positives = 355/555 (63%), Gaps = 12/555 (2%)
 Frame = -3

Query: 1704 AAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITEVKET----LDWRRMNIDVSVCK 1537
            +AP    M TTS+  +FP   L +EQ +++R   HI + + T    LD R+M ++ +V +
Sbjct: 21   SAPAATSMPTTSLARNFPTSVLLREQREEYRVLCHILKEERTSEATLDMRQM-LNGAV-Q 78

Query: 1536 EKKSYQYHQYLKKFERQFLYWPGLWYL-------SSPSSTEVKQILPSSTESLATEKAKT 1378
            E+ S    Q ++ FER+ L WPGLW +        SPSS+   Q +  +T+   +   ++
Sbjct: 79   EEISDNSDQLVQDFERRLLQWPGLWPIFPSLQTGGSPSSSLAMQPVTPTTDGEKSAGTES 138

Query: 1377 VGTKPIKQSSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1198
                 +   S +  +Q   L                                        
Sbjct: 139  CLAAALAMKSLSASKQAAPL------------------LNESKLARVNGDGLPAPSLDPA 180

Query: 1197 XDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDRDRKISSKNFDPSD 1018
              V VP+++  IV                + PKV +H     R TD  RK SS+ FDP+D
Sbjct: 181  SLVSVPLDKVRIVRSTRLLERRSKK----RVPKVGVHETFHSRRTDIKRK-SSEGFDPND 235

Query: 1017 PLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAVGMN 838
            PLR+FLWGPETK+LLTAKEEF+L   IQ++MKLEEVK +L  QFG EPTL+EWAEA G++
Sbjct: 236  PLRMFLWGPETKQLLTAKEEFELIDHIQDMMKLEEVKSRLLSQFGHEPTLIEWAEAAGIS 295

Query: 837  CRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKP 658
            CR LQS L + N SREK+I AN R+VVH+AKQ+  +GLS  DLLQEGSMGLMKS+EKFKP
Sbjct: 296  CRVLQSQLRTANKSREKLINANLRMVVHIAKQYLGKGLSFPDLLQEGSMGLMKSVEKFKP 355

Query: 657  EVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG-HQPTNE 481
            + GCRF+TY+YWWIRQT+R+AI Q+SR IRLPENVY LL ++   ++  IQEG H+PT E
Sbjct: 356  QAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYTLLGKVLEAKKSCIQEGNHRPTKE 415

Query: 480  ELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLMR 301
            ELARRVGI VEKLE +L + R P+SMQQ VW  +  TFQEI AD E EIP+IS  KQ+MR
Sbjct: 416  ELARRVGITVEKLEKLLYTTRMPLSMQQPVWAGQDTTFQEIIADTEIEIPDISVGKQMMR 475

Query: 300  RHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKN 121
            +HVRNLL +LSP+ER+IIRLRFGI+DG Q K+LS IG +FGLSKERVRQLESRAL +LK 
Sbjct: 476  QHVRNLLSILSPKERRIIRLRFGIEDGKQ-KSLSEIGAVFGLSKERVRQLESRALYRLKQ 534

Query: 120  HLSSEGFEAYVNLLI 76
             LSS+G  AY +LL+
Sbjct: 535  CLSSQGLGAYTDLLV 549


>gb|AKC88774.1| sigma factor [Melianthus villosus]
          Length = 538

 Score =  460 bits (1184), Expect = e-126
 Identities = 270/574 (47%), Positives = 358/574 (62%), Gaps = 20/574 (3%)
 Frame = -3

Query: 1737 LSSSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITE--VKETLDWRR 1564
            L+S  P  H+  + V  PM TTS+  HFP   + +E  D++R   HI     + TLD RR
Sbjct: 8    LASPQPFNHKIHSHVT-PMPTTSLAQHFPTSVVLRELRDEYRFLSHIPNKTFEATLD-RR 65

Query: 1563 MNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYL--------SSPSSTEVKQI-LPSS 1411
              +   + +E+ S+     ++ F  +   WP LW+L        S  SS  +K   L ++
Sbjct: 66   QLMTGELVQEENSFISDPLVQDFVCRLFQWPSLWHLLPSLQTGESPMSSLRMKSAKLTTN 125

Query: 1410 TESLA--------TEKAKTVGTKPIKQSSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXX 1255
            TE L          +KA     + +   + + +  +D L                     
Sbjct: 126  TEKLVDAVHAVVLAKKALLASKQAVSLDNESKLSDYDDL--------------------- 164

Query: 1254 XXXXXXXXXXXXXXXXXXXXDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPS 1075
                                   +PI+EE IV                +TP V ++    
Sbjct: 165  ---------------LVTRTSKYIPIDEERIVRSTRILARRSKKR---RTPYVGVNETNC 206

Query: 1074 LRITDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQ 895
             R TD  RK++ + F+P+DPLRLFL GPETK+LLTAKEE  L V+IQELMKLE+V+ +LQ
Sbjct: 207  SRRTDIKRKVA-EGFNPNDPLRLFLGGPETKQLLTAKEESVLIVRIQELMKLEQVRNRLQ 265

Query: 894  LQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQ 715
             QFG EPTL++WAEA G++CR LQS ++SG  SR+K+IYAN R+VVH+AKQ+  RGLS Q
Sbjct: 266  CQFGHEPTLIKWAEAAGLSCRALQSQINSGKKSRDKLIYANLRMVVHIAKQYLGRGLSFQ 325

Query: 714  DLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQ 535
            DL QEGSMGLM S+EKFKP+ GCRF TY+YWWIRQ++R+AI Q+SR IRLPENVY LL +
Sbjct: 326  DLQQEGSMGLMISVEKFKPQAGCRFGTYAYWWIRQSVRKAIFQHSRTIRLPENVYGLLAK 385

Query: 534  IRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEI 358
            +   +RL+IQEG H PT E++A R+GI V+KLE +LA+ R P+S+QQ VW D+  TFQE+
Sbjct: 386  VLEAKRLYIQEGNHHPTKEDIAGRIGITVDKLERLLATTRMPLSIQQPVWADQNTTFQEV 445

Query: 357  TADPEAEIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFG 178
            TAD   EIP+IS  KQLMR+H+R LL +LS +ER+IIRLRFGI+DG Q K+LS IG +FG
Sbjct: 446  TADTAVEIPDISVGKQLMRKHMRGLLGILSSKERRIIRLRFGIEDGEQ-KSLSEIGAIFG 504

Query: 177  LSKERVRQLESRALDKLKNHLSSEGFEAYVNLLI 76
            LSKERVRQLESRAL +LK  LSS+G EAYVN+L+
Sbjct: 505  LSKERVRQLESRALHRLKQCLSSQGLEAYVNMLV 538


>gb|KHG05515.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 567

 Score =  457 bits (1175), Expect = e-125
 Identities = 275/568 (48%), Positives = 352/568 (61%), Gaps = 16/568 (2%)
 Frame = -3

Query: 1731 SSVPIIH-EQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITEVKETLDWRRMNI 1555
            SSV + H EQA P    +  TS+  HFP   L QEQ DD+RP   +  +KE   + R   
Sbjct: 30   SSVALFHHEQAVPAATSIPITSVARHFPTSVLSQEQRDDYRPLPVLHLLKEDKAYSRETD 89

Query: 1554 DVSVC------KEKKSYQYHQYLKKFERQFLYWPGLWYL-------SSPSSTEVKQILPS 1414
             + +       +EK S    Q  ++FE+Q L WP L  L        +PSS+     + +
Sbjct: 90   KLQIGNGPTLQEEKASDNIGQ--QEFEQQLLQWPDLRQLLALLELGENPSSSLNMLSVAA 147

Query: 1413 STESLATEKAKTVG-TKPIKQSSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXXXXXXX 1237
             TE++  E +  V   K    +S       +GL+                          
Sbjct: 148  DTETMTFEPSNVVALAKKALSASKKAASLAEGLELELDDSLSNSLGSVDSFT-------- 199

Query: 1236 XXXXXXXXXXXXXXDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDR 1057
                             +P EE A+                 + PKV +    S +  D 
Sbjct: 200  -----------------LPAEEIAVAVRSTKRLERQSKRRRVQ-PKVVICETYSSQRKDV 241

Query: 1056 DRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGRE 877
             RK SS+  DP+DPLRLFLWGPETK+LLTA+EE DL +++Q+L +L +VK KLQ QFGRE
Sbjct: 242  RRK-SSEGSDPNDPLRLFLWGPETKQLLTAEEESDLIIQVQDLKRLAKVKSKLQSQFGRE 300

Query: 876  PTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEG 697
            PTLVEWAEA+G++C  LQ+ L SG  SREK+I+AN R+VVH+AKQ+Q RGLSLQDLLQEG
Sbjct: 301  PTLVEWAEAMGLSCSALQAELQSGKRSREKLIHANLRMVVHIAKQYQGRGLSLQDLLQEG 360

Query: 696  SMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRR 517
            SMGLMKS+EKFKP+VGCRF TY+YWWIRQTI ++I+Q+SR IRLPENVY LL+++ + +R
Sbjct: 361  SMGLMKSVEKFKPQVGCRFGTYAYWWIRQTITKSILQHSRTIRLPENVYGLLSKVLDAKR 420

Query: 516  LFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEA 340
              IQEG H P+ EELARRVGI VEKL+ +L S R P+SMQQ VW D+  TFQE+T D   
Sbjct: 421  SCIQEGNHYPSKEELARRVGITVEKLDKLLLSTRMPLSMQQPVWVDQDTTFQEVTPDTGI 480

Query: 339  EIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERV 160
            EIP++S  KQLMR+HVRNLL +LSP+ER+IIRLRFGI++  Q  +LS IG MF LSKERV
Sbjct: 481  EIPDVSVAKQLMRQHVRNLLSILSPKERKIIRLRFGIEESKQ-NSLSEIGKMFRLSKERV 539

Query: 159  RQLESRALDKLKNHLSSEGFEAYVNLLI 76
            RQLESRAL KLK  L  +G  AY +LL+
Sbjct: 540  RQLESRALYKLKQCLVKQGLGAYEDLLV 567


>ref|XP_012443171.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Gossypium raimondii]
          Length = 572

 Score =  456 bits (1174), Expect = e-125
 Identities = 276/573 (48%), Positives = 355/573 (61%), Gaps = 21/573 (3%)
 Frame = -3

Query: 1731 SSVPIIH-EQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRP--PLHI---------TEV 1588
            SSV + H EQA P    +  TS+  HFP   L QEQ DD+RP   LH+         T +
Sbjct: 30   SSVALFHHEQAVPAATSIPITSVARHFPTSVLSQEQRDDYRPLPVLHLLKEDKAYSFTLL 89

Query: 1587 KETLDWRRMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYL-------SSPSSTEVK 1429
            +   D  R+    ++ +EK S    Q  ++FE+Q L WP L  L        +PSS+   
Sbjct: 90   QRETDKLRIGNGPTLQEEKASDNIGQ--QEFEQQLLQWPDLRQLLALLELGENPSSSLNM 147

Query: 1428 QILPSSTESLATEKAKTVG-TKPIKQSSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXX 1252
              + + TE++  E +  V   K    +S       +GL+                     
Sbjct: 148  LSVAADTETMTLEPSNVVALAKKALSASKKAASLAEGLELELDDSLSNSLGSVDSST--- 204

Query: 1251 XXXXXXXXXXXXXXXXXXXDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSL 1072
                                  +P+EE A+                 + PKV +    S 
Sbjct: 205  ----------------------LPVEEIAVAVRSTKRLERQSKRRRVQ-PKVVICETYSS 241

Query: 1071 RITDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQL 892
            R  D  RK SSK  DP+DPLRLFLWGPETK+LLTA+EE  L +++Q+L +L + K KLQ 
Sbjct: 242  RRKDVRRK-SSKGSDPNDPLRLFLWGPETKQLLTAEEESVLIIQVQDLKRLVKEKSKLQS 300

Query: 891  QFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQD 712
            QFGREPTLVEWAEA+G++C  LQ+ L SG  SREK+I+AN R+VVH+AKQ+Q RGLSLQD
Sbjct: 301  QFGREPTLVEWAEAMGLSCSALQAELQSGKRSREKLIHANLRMVVHIAKQYQGRGLSLQD 360

Query: 711  LLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQI 532
            LLQEGSMGLMKS+EKFKP+VGCRF+TY+YWWIRQTI ++I+Q+SR IRLPENVY LL+++
Sbjct: 361  LLQEGSMGLMKSVEKFKPQVGCRFATYAYWWIRQTITKSIMQHSRTIRLPENVYGLLSKV 420

Query: 531  RNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEIT 355
             + +R   QEG H P+ EELARRVGI VEKL+ +L S+R P+SMQQ VW D+  TFQE+T
Sbjct: 421  LDAKRSCFQEGNHYPSKEELARRVGITVEKLDKLLLSSRMPLSMQQPVWADQDTTFQEVT 480

Query: 354  ADPEAEIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGL 175
             D   EIP++S  KQLMR+HVRNLL +LSP+ER+IIRLRFGI++  Q  +LS IG MF L
Sbjct: 481  PDTGIEIPDVSVAKQLMRQHVRNLLSILSPKERKIIRLRFGIEESKQ-NSLSEIGKMFRL 539

Query: 174  SKERVRQLESRALDKLKNHLSSEGFEAYVNLLI 76
            SKERVRQLESRAL KLK  L  +G  AY +LL+
Sbjct: 540  SKERVRQLESRALYKLKQCLVKQGLGAYEDLLV 572


>ref|XP_012443173.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X3
            [Gossypium raimondii] gi|763795411|gb|KJB62407.1|
            hypothetical protein B456_009G415400 [Gossypium
            raimondii]
          Length = 567

 Score =  456 bits (1174), Expect = e-125
 Identities = 275/568 (48%), Positives = 354/568 (62%), Gaps = 16/568 (2%)
 Frame = -3

Query: 1731 SSVPIIH-EQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRP--PLHITEVKETL----D 1573
            SSV + H EQA P    +  TS+  HFP   L QEQ DD+RP   LH+ +  +      D
Sbjct: 30   SSVALFHHEQAVPAATSIPITSVARHFPTSVLSQEQRDDYRPLPVLHLLKEDKAYSRETD 89

Query: 1572 WRRMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYL-------SSPSSTEVKQILPS 1414
              R+    ++ +EK S    Q  ++FE+Q L WP L  L        +PSS+     + +
Sbjct: 90   KLRIGNGPTLQEEKASDNIGQ--QEFEQQLLQWPDLRQLLALLELGENPSSSLNMLSVAA 147

Query: 1413 STESLATEKAKTVG-TKPIKQSSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXXXXXXX 1237
             TE++  E +  V   K    +S       +GL+                          
Sbjct: 148  DTETMTLEPSNVVALAKKALSASKKAASLAEGLELELDDSLSNSLGSVDSST-------- 199

Query: 1236 XXXXXXXXXXXXXXDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDR 1057
                             +P+EE A+                 + PKV +    S R  D 
Sbjct: 200  -----------------LPVEEIAVAVRSTKRLERQSKRRRVQ-PKVVICETYSSRRKDV 241

Query: 1056 DRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGRE 877
             RK SSK  DP+DPLRLFLWGPETK+LLTA+EE  L +++Q+L +L + K KLQ QFGRE
Sbjct: 242  RRK-SSKGSDPNDPLRLFLWGPETKQLLTAEEESVLIIQVQDLKRLVKEKSKLQSQFGRE 300

Query: 876  PTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEG 697
            PTLVEWAEA+G++C  LQ+ L SG  SREK+I+AN R+VVH+AKQ+Q RGLSLQDLLQEG
Sbjct: 301  PTLVEWAEAMGLSCSALQAELQSGKRSREKLIHANLRMVVHIAKQYQGRGLSLQDLLQEG 360

Query: 696  SMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRR 517
            SMGLMKS+EKFKP+VGCRF+TY+YWWIRQTI ++I+Q+SR IRLPENVY LL+++ + +R
Sbjct: 361  SMGLMKSVEKFKPQVGCRFATYAYWWIRQTITKSIMQHSRTIRLPENVYGLLSKVLDAKR 420

Query: 516  LFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEA 340
               QEG H P+ EELARRVGI VEKL+ +L S+R P+SMQQ VW D+  TFQE+T D   
Sbjct: 421  SCFQEGNHYPSKEELARRVGITVEKLDKLLLSSRMPLSMQQPVWADQDTTFQEVTPDTGI 480

Query: 339  EIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERV 160
            EIP++S  KQLMR+HVRNLL +LSP+ER+IIRLRFGI++  Q  +LS IG MF LSKERV
Sbjct: 481  EIPDVSVAKQLMRQHVRNLLSILSPKERKIIRLRFGIEESKQ-NSLSEIGKMFRLSKERV 539

Query: 159  RQLESRALDKLKNHLSSEGFEAYVNLLI 76
            RQLESRAL KLK  L  +G  AY +LL+
Sbjct: 540  RQLESRALYKLKQCLVKQGLGAYEDLLV 567


>ref|XP_012443172.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Gossypium raimondii]
          Length = 570

 Score =  455 bits (1171), Expect = e-125
 Identities = 275/571 (48%), Positives = 354/571 (61%), Gaps = 19/571 (3%)
 Frame = -3

Query: 1731 SSVPIIH-EQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRP--PLHI---------TEV 1588
            SSV + H EQA P    +  TS+  HFP   L QEQ DD+RP   LH+         T +
Sbjct: 30   SSVALFHHEQAVPAATSIPITSVARHFPTSVLSQEQRDDYRPLPVLHLLKEDKAYSFTLL 89

Query: 1587 KETLDWRRMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYL-----SSPSSTEVKQI 1423
            +   D  R+    ++ +EK S    Q  ++FE+Q L WP L         +PSS+     
Sbjct: 90   QRETDKLRIGNGPTLQEEKASDNIGQ--QEFEQQLLQWPDLRLALLELGENPSSSLNMLS 147

Query: 1422 LPSSTESLATEKAKTVG-TKPIKQSSSNPMRQWDGLDXXXXXXXXXXXXXXXXXXXXXXX 1246
            + + TE++  E +  V   K    +S       +GL+                       
Sbjct: 148  VAADTETMTLEPSNVVALAKKALSASKKAASLAEGLELELDDSLSNSLGSVDSST----- 202

Query: 1245 XXXXXXXXXXXXXXXXXDVMVPIEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRI 1066
                                +P+EE A+                 + PKV +    S R 
Sbjct: 203  --------------------LPVEEIAVAVRSTKRLERQSKRRRVQ-PKVVICETYSSRR 241

Query: 1065 TDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQF 886
             D  RK SSK  DP+DPLRLFLWGPETK+LLTA+EE  L +++Q+L +L + K KLQ QF
Sbjct: 242  KDVRRK-SSKGSDPNDPLRLFLWGPETKQLLTAEEESVLIIQVQDLKRLVKEKSKLQSQF 300

Query: 885  GREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLL 706
            GREPTLVEWAEA+G++C  LQ+ L SG  SREK+I+AN R+VVH+AKQ+Q RGLSLQDLL
Sbjct: 301  GREPTLVEWAEAMGLSCSALQAELQSGKRSREKLIHANLRMVVHIAKQYQGRGLSLQDLL 360

Query: 705  QEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRN 526
            QEGSMGLMKS+EKFKP+VGCRF+TY+YWWIRQTI ++I+Q+SR IRLPENVY LL+++ +
Sbjct: 361  QEGSMGLMKSVEKFKPQVGCRFATYAYWWIRQTITKSIMQHSRTIRLPENVYGLLSKVLD 420

Query: 525  VRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITAD 349
             +R   QEG H P+ EELARRVGI VEKL+ +L S+R P+SMQQ VW D+  TFQE+T D
Sbjct: 421  AKRSCFQEGNHYPSKEELARRVGITVEKLDKLLLSSRMPLSMQQPVWADQDTTFQEVTPD 480

Query: 348  PEAEIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSK 169
               EIP++S  KQLMR+HVRNLL +LSP+ER+IIRLRFGI++  Q  +LS IG MF LSK
Sbjct: 481  TGIEIPDVSVAKQLMRQHVRNLLSILSPKERKIIRLRFGIEESKQ-NSLSEIGKMFRLSK 539

Query: 168  ERVRQLESRALDKLKNHLSSEGFEAYVNLLI 76
            ERVRQLESRAL KLK  L  +G  AY +LL+
Sbjct: 540  ERVRQLESRALYKLKQCLVKQGLGAYEDLLV 570


>ref|XP_010907040.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Elaeis
            guineensis]
          Length = 570

 Score =  448 bits (1153), Expect = e-123
 Identities = 226/333 (67%), Positives = 272/333 (81%)
 Frame = -3

Query: 1074 LRITDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQ 895
            L  +D   KI     + +DPLRLFLWGPETK+LLT KEE DL V+IQ++++LEEV+Q+L+
Sbjct: 239  LMTSDMKEKIDKGLINQNDPLRLFLWGPETKQLLTVKEEKDLFVQIQDVVRLEEVQQRLR 298

Query: 894  LQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQ 715
            LQF REPTL EWA+AVGM+C+ LQSCL SG  SREKMI AN RLVVHVAKQ++ +GLS+Q
Sbjct: 299  LQFDREPTLSEWAKAVGMSCQVLQSCLSSGKRSREKMINANLRLVVHVAKQYEGKGLSVQ 358

Query: 714  DLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQ 535
            DLLQEGS GLMKSLEKFKP+ GCRF+TY+YWWIRQ+IRRAI  NSR+IRLPENV+ LL +
Sbjct: 359  DLLQEGSRGLMKSLEKFKPKAGCRFATYAYWWIRQSIRRAIFLNSRVIRLPENVFGLLKR 418

Query: 534  IRNVRRLFIQEGHQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEIT 355
            I+N RRLFIQEGH PTNEE+A+RVGI VEKLE +L + R+P+S+Q+ VW D+ V FQEIT
Sbjct: 419  IKNARRLFIQEGHAPTNEEIAKRVGISVEKLEALLLTTRNPISIQECVWTDQDVKFQEIT 478

Query: 354  ADPEAEIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGL 175
            ADP  E PE+S  KQ+MR+HVR LL +L PRERQII+ RFGI +  Q K+L+ IG MFGL
Sbjct: 479  ADPGVETPELSIAKQMMRQHVRGLLRILKPRERQIIQYRFGIPNNEQ-KSLTEIGAMFGL 537

Query: 174  SKERVRQLESRALDKLKNHLSSEGFEAYVNLLI 76
            SKERVRQLESRALDKLK  L S G  AY+ LL+
Sbjct: 538  SKERVRQLESRALDKLKGCLPSHGLGAYLELLL 570



 Score = 64.7 bits (156), Expect = 2e-07
 Identities = 37/114 (32%), Positives = 59/114 (51%)
 Frame = -3

Query: 1731 SSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITEVKETLDWRRMNID 1552
            +SVP++H+QA+     + TT I CHFP   L  EQ DD++      E K   D +++   
Sbjct: 26   TSVPMLHDQASWTNTSVPTTPIACHFPISVLSHEQHDDYKTNCISKEEKNVQDNQQVRSG 85

Query: 1551 VSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLATE 1390
             S  +EK+  ++ QYL+  ++Q LY    WY      TE K  L  + E + ++
Sbjct: 86   RSCYEEKEKCEFAQYLRYSKQQLLYHQVFWYPFLSLYTEEKTPLAMAVEPIKSD 139


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Vitis
            vinifera]
          Length = 567

 Score =  447 bits (1151), Expect = e-122
 Identities = 225/346 (65%), Positives = 279/346 (80%), Gaps = 1/346 (0%)
 Frame = -3

Query: 1110 KTPKVDLHGNPSLRITDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQE 931
            + PKV +H N   R  +  RKI+ + +DP DPLRLFLWGPET++LLTAKEE +L V+IQE
Sbjct: 224  RNPKVAVHENHGSRRAEVQRKIN-EGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQE 282

Query: 930  LMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHV 751
            LM+LEEVK++LQ    REPT+VEWAEAVG++C+ LQS LHSGN SR+K+IYAN R+VVH+
Sbjct: 283  LMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHI 342

Query: 750  AKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRII 571
            AKQ+Q RGL+LQDLLQEGSMGLM S+EKFKP  GCRF++Y+YWWIRQ +R+AI Q+SR I
Sbjct: 343  AKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTI 402

Query: 570  RLPENVYALLTQIRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQS 394
            RLPEN+Y+LL +++  +RLFIQEG H PT EE+A RVGI +EKL+ +L   R P+SMQQ 
Sbjct: 403  RLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQP 462

Query: 393  VWQDEGVTFQEITADPEAEIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQ 214
            VW D+  TFQE+TAD   EIP++S  KQLMR+HVRNLL VL+P+ER+IIRLRFGI D G 
Sbjct: 463  VWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGD-GI 521

Query: 213  GKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGFEAYVNLLI 76
             +TLS IG +FG SKERVRQLE RAL KLK  LSS G E+Y +LL+
Sbjct: 522  PRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 567



 Score = 73.9 bits (180), Expect = 4e-10
 Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
 Frame = -3

Query: 1734 SSSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRP-PLHITEVKE---TLDWR 1567
            SSSV ++H+Q AP V  + TT I   FP   L QEQ D++RP P  + + +    TL+ R
Sbjct: 30   SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKR 88

Query: 1566 RMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSS-TESLATE 1390
            +M I VS   E+ S  ++QY+  FERQ L  PGLWY    S T  K    SS  +S+ T+
Sbjct: 89   QMEIVVSA-DEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTD 147

Query: 1389 KAKTVGTKP 1363
               ++  KP
Sbjct: 148  IENSMDVKP 156


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  447 bits (1151), Expect = e-122
 Identities = 225/346 (65%), Positives = 279/346 (80%), Gaps = 1/346 (0%)
 Frame = -3

Query: 1110 KTPKVDLHGNPSLRITDRDRKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQE 931
            + PKV +H N   R  +  RKI+ + +DP DPLRLFLWGPET++LLTAKEE +L V+IQE
Sbjct: 218  RNPKVAVHENHGSRRAEVQRKIN-EGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQE 276

Query: 930  LMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHV 751
            LM+LEEVK++LQ    REPT+VEWAEAVG++C+ LQS LHSGN SR+K+IYAN R+VVH+
Sbjct: 277  LMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHI 336

Query: 750  AKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRII 571
            AKQ+Q RGL+LQDLLQEGSMGLM S+EKFKP  GCRF++Y+YWWIRQ +R+AI Q+SR I
Sbjct: 337  AKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTI 396

Query: 570  RLPENVYALLTQIRNVRRLFIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQS 394
            RLPEN+Y+LL +++  +RLFIQEG H PT EE+A RVGI +EKL+ +L   R P+SMQQ 
Sbjct: 397  RLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQP 456

Query: 393  VWQDEGVTFQEITADPEAEIPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQ 214
            VW D+  TFQE+TAD   EIP++S  KQLMR+HVRNLL VL+P+ER+IIRLRFGI D G 
Sbjct: 457  VWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGD-GI 515

Query: 213  GKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSEGFEAYVNLLI 76
             +TLS IG +FG SKERVRQLE RAL KLK  LSS G E+Y +LL+
Sbjct: 516  PRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561



 Score = 73.9 bits (180), Expect = 4e-10
 Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
 Frame = -3

Query: 1734 SSSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRP-PLHITEVKE---TLDWR 1567
            SSSV ++H+Q AP V  + TT I   FP   L QEQ D++RP P  + + +    TL+ R
Sbjct: 24   SSSVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKR 82

Query: 1566 RMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSS-TESLATE 1390
            +M I VS   E+ S  ++QY+  FERQ L  PGLWY    S T  K    SS  +S+ T+
Sbjct: 83   QMEIVVSA-DEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTD 141

Query: 1389 KAKTVGTKP 1363
               ++  KP
Sbjct: 142  IENSMDVKP 150


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  444 bits (1143), Expect = e-122
 Identities = 229/370 (61%), Positives = 283/370 (76%), Gaps = 2/370 (0%)
 Frame = -3

Query: 1179 IEEEAIVXXXXXXXXXXXXXXLPKTPKVDLHGNPSLRITDRD-RKISSKNFDPSDPLRLF 1003
            +EEE  V                K PK  + G+ S   T  D RK  S+ F+P+DPLRLF
Sbjct: 200  VEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLF 259

Query: 1002 LWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREPTLVEWAEAVGMNCRDLQ 823
            LWGPET++LLTAKEE +L  ++Q+L KLEEVK +LQ QFGREPTL+EWAEAVG++C+ L+
Sbjct: 260  LWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLIEWAEAVGISCQILK 319

Query: 822  SCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGSMGLMKSLEKFKPEVGCR 643
            S L SG SSREK+IYAN R+VVH+AKQ+Q RGL LQDL+QEGSMGLMKS+EKFKP+ GCR
Sbjct: 320  SQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGLMKSVEKFKPQAGCR 379

Query: 642  FSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRLFIQEG-HQPTNEELARR 466
            F+TY+YWWIRQT+R+AI Q+SR IRLPENVY+LL ++   ++  IQEG H P  EELARR
Sbjct: 380  FATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQEGNHNPNKEELARR 439

Query: 465  VGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAEIPEISATKQLMRRHVRN 286
            VGI VEKLE +L + R P+SMQQ VW D+  TFQE+TAD   EIP++S  KQLMR+HVR+
Sbjct: 440  VGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPDVSVAKQLMRQHVRH 499

Query: 285  LLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVRQLESRALDKLKNHLSSE 106
            LL +L+ RER+IIRLR+GI+DG Q ++LS IG MFGLSKERVRQLESRA  KL+  L S+
Sbjct: 500  LLSILNLREREIIRLRYGIEDGKQ-RSLSEIGGMFGLSKERVRQLESRAFLKLRQSLGSQ 558

Query: 105  GFEAYVNLLI 76
            G  AY  LL+
Sbjct: 559  GLGAYGPLLV 568



 Score = 60.1 bits (144), Expect = 6e-06
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
 Frame = -3

Query: 1743 TSLSSSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITEVKET----L 1576
            +S S+SV ++HEQA P V  +  TS+  HFP   L QEQ D+F+P LH+ +  +T    L
Sbjct: 27   SSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDKTSEAAL 86

Query: 1575 DWRRMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLA 1396
            D  ++    SV ++     ++  +   + Q L    L   SS   T  K   P + ESL 
Sbjct: 87   DRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDILDVFSS-LQTGAKPSTPLTLESLT 145

Query: 1395 TEKAKTVGTKP 1363
            T   K +  +P
Sbjct: 146  TASNKHMDVEP 156


>ref|XP_011018731.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Populus euphratica]
          Length = 557

 Score =  444 bits (1142), Expect = e-121
 Identities = 220/326 (67%), Positives = 272/326 (83%), Gaps = 1/326 (0%)
 Frame = -3

Query: 1053 RKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREP 874
            +K  S+ FDP+DPLRLFLWGPETK+LLTAKEEF+L  +IQ+LM LE VK +L+ QFGREP
Sbjct: 232  QKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREP 291

Query: 873  TLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGS 694
            TLVEWA+AVG++C  L+  LHSGN SREK+I AN R+VVH+AK++QNRGL LQDLLQEG+
Sbjct: 292  TLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGT 351

Query: 693  MGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRL 514
            +GLMKS+EKFKP+ GCRF+TY+YWWIRQTI +AI Q+SR IRLPENVY LL ++   +R 
Sbjct: 352  VGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRS 411

Query: 513  FIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAE 337
            +IQEG HQPT EE+ARRVGI ++KLE +L   R+P+SMQQ+VW D+  TFQEITAD E E
Sbjct: 412  YIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIE 471

Query: 336  IPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVR 157
            IP++S  KQLMR+H+R LL +LS +ER+IIRLRFGI+DG Q K+LS IG++FGLSKERVR
Sbjct: 472  IPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQ-KSLSEIGNVFGLSKERVR 530

Query: 156  QLESRALDKLKNHLSSEGFEAYVNLL 79
            QLESRAL KLK  + S G +AY +LL
Sbjct: 531  QLESRALYKLKQCVGSHGLDAYADLL 556



 Score = 76.6 bits (187), Expect = 6e-11
 Identities = 48/130 (36%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
 Frame = -3

Query: 1740 SLSSSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITE----VKETLD 1573
            SL SSV I+ EQA P V  + TTS   HFP   L QEQ D+FRP  +I +     + TLD
Sbjct: 23   SLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRPSQATLD 82

Query: 1572 WRRMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEVKQILPSSTESLAT 1393
             R+  I  S  + K S +  Q ++ FE Q  +WP  W L  PS       +  +T+S+  
Sbjct: 83   RRKTEIGTSGHEGKDSDELDQMVENFEYQLHHWPTYWNLLPPSQKGQNPSMSFTTQSVTR 142

Query: 1392 EKAKTVGTKP 1363
               K +  +P
Sbjct: 143  STDKLIDVEP 152


>ref|XP_011018728.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica] gi|743810385|ref|XP_011018729.1|
            PREDICTED: RNA polymerase sigma factor sigF,
            chloroplastic isoform X1 [Populus euphratica]
            gi|743810387|ref|XP_011018730.1| PREDICTED: RNA
            polymerase sigma factor sigF, chloroplastic isoform X1
            [Populus euphratica]
          Length = 570

 Score =  444 bits (1142), Expect = e-121
 Identities = 220/326 (67%), Positives = 272/326 (83%), Gaps = 1/326 (0%)
 Frame = -3

Query: 1053 RKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREP 874
            +K  S+ FDP+DPLRLFLWGPETK+LLTAKEEF+L  +IQ+LM LE VK +L+ QFGREP
Sbjct: 245  QKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREP 304

Query: 873  TLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGS 694
            TLVEWA+AVG++C  L+  LHSGN SREK+I AN R+VVH+AK++QNRGL LQDLLQEG+
Sbjct: 305  TLVEWAQAVGLSCSVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGT 364

Query: 693  MGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRL 514
            +GLMKS+EKFKP+ GCRF+TY+YWWIRQTI +AI Q+SR IRLPENVY LL ++   +R 
Sbjct: 365  VGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRS 424

Query: 513  FIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAE 337
            +IQEG HQPT EE+ARRVGI ++KLE +L   R+P+SMQQ+VW D+  TFQEITAD E E
Sbjct: 425  YIQEGNHQPTTEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIE 484

Query: 336  IPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVR 157
            IP++S  KQLMR+H+R LL +LS +ER+IIRLRFGI+DG Q K+LS IG++FGLSKERVR
Sbjct: 485  IPDVSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQ-KSLSEIGNVFGLSKERVR 543

Query: 156  QLESRALDKLKNHLSSEGFEAYVNLL 79
            QLESRAL KLK  + S G +AY +LL
Sbjct: 544  QLESRALYKLKQCVGSHGLDAYADLL 569



 Score = 67.4 bits (163), Expect = 4e-08
 Identities = 48/143 (33%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
 Frame = -3

Query: 1740 SLSSSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITE----VKETLD 1573
            SL SSV I+ EQA P V  + TTS   HFP   L QEQ D+FRP  +I +     + TLD
Sbjct: 23   SLCSSVLILREQATPAVTAIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRPSQATLD 82

Query: 1572 WRRM-------------NIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLSSPSSTEV 1432
             R+               I  S  + K S +  Q ++ FE Q  +WP  W L  PS    
Sbjct: 83   RRKTEIGTSGHEGKDSDEIGTSGHEGKDSDELDQMVENFEYQLHHWPTYWNLLPPSQKGQ 142

Query: 1431 KQILPSSTESLATEKAKTVGTKP 1363
               +  +T+S+     K +  +P
Sbjct: 143  NPSMSFTTQSVTRSTDKLIDVEP 165


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  443 bits (1139), Expect = e-121
 Identities = 220/326 (67%), Positives = 272/326 (83%), Gaps = 1/326 (0%)
 Frame = -3

Query: 1053 RKISSKNFDPSDPLRLFLWGPETKELLTAKEEFDLSVKIQELMKLEEVKQKLQLQFGREP 874
            +K  S+ FDP+DPLRLFLWGPETK+LLTAKEEF+L  +IQ+LM LE VK +L+ QFGREP
Sbjct: 210  QKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREP 269

Query: 873  TLVEWAEAVGMNCRDLQSCLHSGNSSREKMIYANSRLVVHVAKQFQNRGLSLQDLLQEGS 694
            TLVEWA+AVG++C  L+  LHSGN SREK+I AN R+VVH+AK++QNRGL LQDLLQEG+
Sbjct: 270  TLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGT 329

Query: 693  MGLMKSLEKFKPEVGCRFSTYSYWWIRQTIRRAIVQNSRIIRLPENVYALLTQIRNVRRL 514
            +GLMKS+EKFKP+ GCRF+TY+YWWIRQTI +AI Q+SR IRLPENVY LL ++   +R 
Sbjct: 330  VGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRS 389

Query: 513  FIQEG-HQPTNEELARRVGIRVEKLEMVLASARSPVSMQQSVWQDEGVTFQEITADPEAE 337
            +IQEG HQPT EE+ARRVGI ++KLE +L   R+P+SMQQ+VW D+  TFQEITAD E E
Sbjct: 390  YIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIE 449

Query: 336  IPEISATKQLMRRHVRNLLCVLSPRERQIIRLRFGIQDGGQGKTLSAIGDMFGLSKERVR 157
            IP++S  KQLMR+H+R LL +LS +ER+IIRLRFGI+DG Q K+LS IG++FGLSKERVR
Sbjct: 450  IPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQ-KSLSEIGNVFGLSKERVR 508

Query: 156  QLESRALDKLKNHLSSEGFEAYVNLL 79
            QLESRAL KLK  + S G +AY +LL
Sbjct: 509  QLESRALYKLKQCVGSHGLDAYADLL 534



 Score = 70.1 bits (170), Expect = 6e-09
 Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
 Frame = -3

Query: 1740 SLSSSVPIIHEQAAPVVMPMQTTSIDCHFPALALCQEQCDDFRPPLHITE----VKETLD 1573
            SL+SSV I+ EQA P V  + TTS   HFP   L QEQ D+FRP  +I +     + TLD
Sbjct: 23   SLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLD 82

Query: 1572 WRRMNIDVSVCKEKKSYQYHQYLKKFERQFLYWPGLWYLS 1453
             R+  I  S  + K S +  Q ++ FE Q  +WP  W L+
Sbjct: 83   RRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWNLT 122