BLASTX nr result

ID: Cinnamomum25_contig00005258 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00005258
         (413 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010922880.1| PREDICTED: zinc finger protein VAR3, chlorop...    70   4e-10
ref|XP_009410474.1| PREDICTED: zinc finger protein VAR3, chlorop...    58   3e-06

>ref|XP_010922880.1| PREDICTED: zinc finger protein VAR3, chloroplastic [Elaeis
            guineensis]
          Length = 903

 Score = 70.5 bits (171), Expect = 4e-10
 Identities = 51/136 (37%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
 Frame = -3

Query: 411  NSSNXXXXXXXXPDYFAKKDKQPENGVPTEKASSETLLPEK---VPDMPKKSET--SNIG 247
            N+SN        PDYFAKKDKQPE+    E  S     PEK   VP+  +++ET  SN G
Sbjct: 654  NNSNFVPFVPFPPDYFAKKDKQPEDSQTVESTSEGAAPPEKGQIVPEKLEEAETRVSNFG 713

Query: 246  SVNFDNQ----QTNTDQRSVGFPSNNLNENKVDAAYRGPAVNSAQQSNNLQTNPGVSWSS 79
            S    +Q    Q N +  S        NE+KVDA Y G    SAQ  NN   N     +S
Sbjct: 714  SAGNTSQWPDSQPNNESHSTDLSGKTYNESKVDAGYGGATATSAQLPNNTWNNSKEGGNS 773

Query: 78   GLYGKEHTVGSSTQQS 31
                K    G+S+  S
Sbjct: 774  EYTQKSAFDGASSTAS 789


>ref|XP_009410474.1| PREDICTED: zinc finger protein VAR3, chloroplastic [Musa acuminata
            subsp. malaccensis]
          Length = 901

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 51/149 (34%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
 Frame = -3

Query: 411  NSSNXXXXXXXXPDYFAKKDKQPENGVPTEKASSETLLPEKVPDMPKKSETSNIGSVNFD 232
            NS N        PDYFAKKDKQPE   PTE ++    L EK     +KSE S  G  N +
Sbjct: 654  NSGNFVPFVPFPPDYFAKKDKQPETS-PTEGST----LHEKARSETEKSEESMTGVANSE 708

Query: 231  N-------------QQTNTDQRSVGFPSNNLNENKVDAAYRGPAVNSAQQSNNLQTN--- 100
            +              Q++    S   PS +L   K+DA   G + NSAQ  N    N   
Sbjct: 709  SGGNATRQLENWSANQSDHGTTSTNPPSMDLTYRKMDAYNVGGSANSAQPLNTSWRNQSE 768

Query: 99   -PGVSWSSGLYGKEHTVGSSTQQSENNQN 16
             P   +S        +V +STQQ+EN+++
Sbjct: 769  IPSNDFSQKNTYSGPSVSASTQQTENSKS 797


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