BLASTX nr result

ID: Cinnamomum24_contig00027774 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00027774
         (660 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010913805.1| PREDICTED: squamosa promoter-binding-like pr...    63   1e-07
emb|CAN69124.1| hypothetical protein VITISV_026287 [Vitis vinifera]    59   3e-06
ref|XP_010928735.1| PREDICTED: squamosa promoter-binding-like pr...    58   4e-06

>ref|XP_010913805.1| PREDICTED: squamosa promoter-binding-like protein 12 [Elaeis
           guineensis]
          Length = 468

 Score = 63.2 bits (152), Expect = 1e-07
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
 Frame = -3

Query: 598 GLEASMISSNQDATPDVQRXXXXXXXXXXXXXXXLD-----QIMLGNHASVAQPTMHTGY 434
           GLEAS+ +SN D   D++R                      Q+   NH S AQPT+H   
Sbjct: 358 GLEASLTASNLDGALDLRRALSLLSTNSWGSADPGTTSSVVQLAHANHTSAAQPTIHAVN 417

Query: 433 QGLQLSSSEFLPGDHPSAEP-LWASLALHNSGSQLHEFQLFQTPFESSFLDNNLMH 269
                S+SE+   +H  A+     S+A H SGSQ  EFQL + P+E++F D+N +H
Sbjct: 418 -----STSEYWQDEHALAQQGRVLSVAAHRSGSQFQEFQLLKAPYETTFFDSNQIH 468


>emb|CAN69124.1| hypothetical protein VITISV_026287 [Vitis vinifera]
          Length = 1048

 Score = 58.9 bits (141), Expect = 3e-06
 Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
 Frame = -3

Query: 595  LEASMISSNQDATPDVQRXXXXXXXXXXXXXXXL----DQIMLGNHASVAQPTMHTGYQG 428
            LEAS I+SN +  PD +R                    DQ+M  N  S+AQPT H     
Sbjct: 935  LEASAIASNSNVAPDFRRALSLLSTNSWGLNDPGPTSLDQLMHVNQXSMAQPTXHAEPHN 994

Query: 427  LQLSSSEFLPGDHPSAEPLWASLALHNSGSQL-HEFQLFQTPFES 296
              L+SSE +      +E    SL LHN+GS +  EFQLF+ P+ES
Sbjct: 995  WALASSENMHVQQTPSETRGHSLDLHNNGSSMFQEFQLFKAPYES 1039


>ref|XP_010928735.1| PREDICTED: squamosa promoter-binding-like protein 12 [Elaeis
           guineensis] gi|743809884|ref|XP_010928736.1| PREDICTED:
           squamosa promoter-binding-like protein 12 [Elaeis
           guineensis] gi|743809888|ref|XP_010928737.1| PREDICTED:
           squamosa promoter-binding-like protein 12 [Elaeis
           guineensis] gi|743809892|ref|XP_010928738.1| PREDICTED:
           squamosa promoter-binding-like protein 12 [Elaeis
           guineensis]
          Length = 461

 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 45/175 (25%)
 Frame = -3

Query: 658 CEFKPTLAKSSWLRN--------------------------------PKEGI-------G 596
           C+FK T  K SW+++                                P +GI       G
Sbjct: 292 CDFKVTQMKGSWMKSAKVESIDGQLHPPNSQRSNAFSTLCHEVDRLLPMKGITAEVINQG 351

Query: 595 LEASMISSNQDATPDVQRXXXXXXXXXXXXXXXLD-----QIMLGNHASVAQPTMHTGYQ 431
            EAS+ +SN D  PD++R                      Q++  NH S AQP +H    
Sbjct: 352 PEASLTASNLDGAPDLRRALSLLSANAWGSADSGTTSSLIQLVHANHTSAAQPAIHAVN- 410

Query: 430 GLQLSSSEFLPGDHPSAEP-LWASLALHNSGSQLHEFQLFQTPFESSFLDNNLMH 269
               S+SE+   +H  A+         H++GSQ  EFQL ++P+E++F D++ +H
Sbjct: 411 ----STSEYWQDEHALAQQGRVLQFPTHSNGSQFQEFQLLKSPYETTFFDSSQIH 461


Top