BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00027548
         (542 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008791356.1| PREDICTED: pentatricopeptide repeat-containi...   237   2e-60
gb|AKH05175.1| chlororespiratory reduction 4, partial [Cypripedi...   231   2e-58
gb|AKH05173.1| chlororespiratory reduction 4, partial [Apostasia...   230   3e-58
ref|XP_010934710.1| PREDICTED: pentatricopeptide repeat-containi...   230   4e-58
gb|AKH05179.1| chlororespiratory reduction 4 [Francoa sonchifolia]    227   2e-57
ref|XP_010524367.1| PREDICTED: pentatricopeptide repeat-containi...   226   4e-57
gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]         226   4e-57
emb|CBI38872.3| unnamed protein product [Vitis vinifera]              226   7e-57
ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containi...   226   7e-57
gb|AHB18411.1| pentatricopeptide repeat-containing protein [Goss...   226   7e-57
ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containi...   225   9e-57
ref|XP_012489757.1| PREDICTED: pentatricopeptide repeat-containi...   225   1e-56
gb|AKH05187.1| chlororespiratory reduction 4 [Monsonia marlothii]     224   1e-56
gb|AKH05188.1| chlororespiratory reduction 4 [Monsonia emarginata]    224   3e-56
ref|XP_007052071.1| Pentatricopeptide repeat (PPR) superfamily p...   223   6e-56
gb|AKH05186.1| chlororespiratory reduction 4, partial [Masdevall...   222   7e-56
ref|XP_002320719.2| pentatricopeptide repeat-containing family p...   222   7e-56
ref|XP_011034218.1| PREDICTED: pentatricopeptide repeat-containi...   222   1e-55
ref|XP_008438168.1| PREDICTED: pentatricopeptide repeat-containi...   222   1e-55
gb|AKH05180.1| chlororespiratory reduction 4 [Geranium incanum]       221   1e-55

>ref|XP_008791356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Phoenix dactylifera]
          Length = 627

 Score =  237 bits (605), Expect = 2e-60
 Identities = 109/182 (59%), Positives = 147/182 (80%), Gaps = 2/182 (1%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VFDR+P RDSVSWNSMIDGYVKNG I  ARELFD++ D +KNLVTWNSMI G A    G+
Sbjct: 171 VFDRIPQRDSVSWNSMIDGYVKNGRIGAARELFDQMRDGDKNLVTWNSMIGGCASETNGI 230

Query: 361 --EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVK 188
             + AR LFD MPERD+VSWN MIDGY +CGR+ DA DLF++M +RDV++WA+M++GY++
Sbjct: 231 GIDMARRLFDEMPERDLVSWNLMIDGYARCGRMVDAEDLFERMLDRDVISWANMIYGYME 290

Query: 187 SESLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIAT 8
           + S+ +A+ LFD+MPERDVI WN+MM+G V+NGNS +A+ +F  + ++G++ PD+ T+A+
Sbjct: 291 AGSVALARKLFDEMPERDVITWNIMMSGYVKNGNSAEALNLFSMMRLQGSVAPDNATLAS 350

Query: 7   AL 2
            L
Sbjct: 351 VL 352



 Score = 77.4 bits (189), Expect = 4e-12
 Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 44/215 (20%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +F+RM  RD +SW +MI GY++ G + +AR+LFD +   E++++TWN M+SGY +  G  
Sbjct: 269 LFERMLDRDVISWANMIYGYMEAGSVALARKLFDEMP--ERDVITWNIMMSGYVK-NGNS 325

Query: 361 EAARGLFDRMP-----------------------------------ERDVVSWN-----S 302
             A  LF  M                                    ER+ +  +     S
Sbjct: 326 AEALNLFSMMRLQGSVAPDNATLASVLSAISELGRIHDGIAIHEYIERNCLPLDGKLGVS 385

Query: 301 MIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMPERDVIAW 122
           +ID Y KCGRLEDA ++F ++  R V  W +M+ G        +A  LF +M    V+  
Sbjct: 386 LIDMYSKCGRLEDALEVF-EISGRSVDHWNAMICGLAVHGCGALALELFREMERCLVVPD 444

Query: 121 NVMMAG----CVQNGNSIKAIKIFHQLLIEGNLDP 29
           ++   G    C  +G   + +  F  +  + NL+P
Sbjct: 445 DITFIGVLNACSHSGLVEEGLMCFEMMKRDYNLEP 479


>gb|AKH05175.1| chlororespiratory reduction 4, partial [Cypripedium formosanum]
          Length = 543

 Score =  231 bits (589), Expect = 2e-58
 Identities = 104/180 (57%), Positives = 145/180 (80%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VFDRMP RDSVSWNSMIDGY KNG +D A++LF  ++D +++LVTWNSMIS +A   GG+
Sbjct: 114 VFDRMPQRDSVSWNSMIDGYAKNGKMDAAKDLFGWMEDGDRDLVTWNSMISLHAASLGGI 173

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
           + AR LFD+MPERD+ SWN MIDGYVK GR+E+A  LF+ MPE+DV++WA+++ GY+++ 
Sbjct: 174 DDARELFDQMPERDLFSWNLMIDGYVKLGRMENAAALFEVMPEKDVISWANLISGYMEAG 233

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +++A+ +FD+MPERD+I WN+MMAG V+NG    A+++FH++  E +L PD TT+AT L
Sbjct: 234 QVDLARQMFDEMPERDLITWNIMMAGYVKNGRFADALRLFHEMRTEASLAPDATTLATTL 293



 Score = 75.1 bits (183), Expect = 2e-11
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 45/216 (20%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +F+ MP +D +SW ++I GY++ G +D+AR++FD +   E++L+TWN M++GY +  G  
Sbjct: 210 LFEVMPEKDVISWANLISGYMEAGQVDLARQMFDEMP--ERDLITWNIMMAGYVK-NGRF 266

Query: 361 EAARGLFDRM-------PE-----------------------RDVVSWN----------S 302
             A  LF  M       P+                        D +  N           
Sbjct: 267 ADALRLFHEMRTEASLAPDATTLATTLSAIAELGRVRDGFAVHDYIERNRLPLRGKLGVG 326

Query: 301 MIDGYVKCGRLEDAYDLFKK----MPERDVVTWASMVHGYVKSESLEMAQHLFDKMP-ER 137
           +ID Y KCGRLEDA  +F++    +   + +     VHGY +S +LE+  H  +K+P + 
Sbjct: 327 LIDMYAKCGRLEDALRVFEESGNTVDHWNAIICGLAVHGYGES-ALELF-HAMEKLPLKP 384

Query: 136 DVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDP 29
           D I +  ++  C   G   + +K F  +     L+P
Sbjct: 385 DDITFIGVLNACSHAGLVDEGMKCFEVMQTCCRLEP 420


>gb|AKH05173.1| chlororespiratory reduction 4, partial [Apostasia odorata]
          Length = 600

 Score =  230 bits (587), Expect = 3e-58
 Identities = 106/180 (58%), Positives = 138/180 (76%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VFDRMP RDS+SWNS+IDGY KNG +D A +LF R+ DE +NLV WNSMISG+A    G+
Sbjct: 169 VFDRMPHRDSISWNSLIDGYAKNGRMDAANDLFSRMGDEHRNLVAWNSMISGFAASNDGI 228

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             AR LFD MPERD VSWNSMIDGYVK G + DA  LF  MPE+DV++W++++ GY+ + 
Sbjct: 229 SEARKLFDEMPERDSVSWNSMIDGYVKLGMMSDATALFTIMPEKDVISWSNLIAGYMDAG 288

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            + +AQ LFD+MPERD+I WN+M+AG V+NG    A+ +F+Q+  +GNL PD TT++TAL
Sbjct: 289 EVHIAQRLFDEMPERDLITWNIMIAGYVKNGCFPAALHLFYQMRTQGNLAPDVTTLSTAL 348



 Score =  106 bits (265), Expect = 6e-21
 Identities = 72/203 (35%), Positives = 105/203 (51%), Gaps = 40/203 (19%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +FD MP RDSVSWNSMIDGYVK GM+  A  LF  +   EK++++W+++I+GY    G +
Sbjct: 234 LFDEMPERDSVSWNSMIDGYVKLGMMSDATALFTIMP--EKDVISWSNLIAGYMDA-GEV 290

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPER-----DVVTWASM--- 206
             A+ LFD MPERD+++WN MI GYVK G    A  LF +M  +     DV T ++    
Sbjct: 291 HIAQRLFDEMPERDLITWNIMIAGYVKNGCFPAALHLFYQMRTQGNLAPDVTTLSTALSA 350

Query: 205 ------------VHGYV--------------------KSESLEMAQHLFDKMPERDVIAW 122
                       VH Y+                    KS  L  A  +F+   +  +  W
Sbjct: 351 IAELGRVRDGIAVHEYIGRNSFPLNGKLGVGLIDMYAKSGHLREALRVFEASGDT-IDHW 409

Query: 121 NVMMAGCVQNGNSIKAIKIFHQL 53
           N ++ G   +G+S  A+++FH +
Sbjct: 410 NAIIGGLAIHGHSKLALQLFHAM 432


>ref|XP_010934710.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Elaeis guineensis]
          Length = 663

 Score =  230 bits (586), Expect = 4e-58
 Identities = 107/183 (58%), Positives = 147/183 (80%), Gaps = 3/183 (1%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEG-- 368
           VFDR+  RDSVSWNSMIDGYVK+G +  A+ELFD++ D +KNLVTWNSM+ G+A  EG  
Sbjct: 171 VFDRIQHRDSVSWNSMIDGYVKSGRMGAAKELFDQMRDGDKNLVTWNSMLGGFA-FEGNG 229

Query: 367 -GLEAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYV 191
            G++ AR LFD MPERD+VSWN MIDGY KCGR+ DA DLF+ M +RDV++WA+M+ GY+
Sbjct: 230 IGIDMARQLFDEMPERDLVSWNMMIDGYAKCGRMGDAEDLFEHMLDRDVISWANMIFGYM 289

Query: 190 KSESLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIA 11
           ++ S+ +A+ LFD+MPERDVI WN+MM+G V+NG+SI+A+ +F  + ++G++ PD  T+A
Sbjct: 290 EAGSVALARKLFDEMPERDVITWNIMMSGYVKNGDSIEALNLFSMMRLQGSVTPDSATLA 349

Query: 10  TAL 2
           + L
Sbjct: 350 SVL 352



 Score =  103 bits (257), Expect = 5e-20
 Identities = 72/203 (35%), Positives = 101/203 (49%), Gaps = 40/203 (19%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +FD MP RD VSWN MIDGY K G +  A +LF+ + D  +++++W +MI GY    G +
Sbjct: 238 LFDEMPERDLVSWNMMIDGYAKCGRMGDAEDLFEHMLD--RDVISWANMIFGYMEA-GSV 294

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPER-----DVVTWASM--- 206
             AR LFD MPERDV++WN M+ GYVK G   +A +LF  M  +     D  T AS+   
Sbjct: 295 ALARKLFDEMPERDVITWNIMMSGYVKNGDSIEALNLFSMMRLQGSVTPDSATLASVLSA 354

Query: 205 ------------VHGYV--------------------KSESLEMAQHLFDKMPERDVIAW 122
                       VH Y+                    K   LE A  +F+ +  R V  W
Sbjct: 355 ISELGRTHDGIAVHEYIERNCLPLDGKLGVALIDMYSKRGRLEDALEVFE-ISGRSVDHW 413

Query: 121 NVMMAGCVQNGNSIKAIKIFHQL 53
           N M+ G   +G    A+K+F ++
Sbjct: 414 NAMICGLAVHGCGELALKLFWEM 436



 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 44/215 (20%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +F+ M  RD +SW +MI GY++ G + +AR+LFD +   E++++TWN M+SGY +    +
Sbjct: 269 LFEHMLDRDVISWANMIFGYMEAGSVALARKLFDEMP--ERDVITWNIMMSGYVKNGDSI 326

Query: 361 EAARGLFDRMPERDVVSWNS---------------------------------------- 302
           EA   LF  M  +  V+ +S                                        
Sbjct: 327 EALN-LFSMMRLQGSVTPDSATLASVLSAISELGRTHDGIAVHEYIERNCLPLDGKLGVA 385

Query: 301 MIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMPERDVIAW 122
           +ID Y K GRLEDA ++F ++  R V  W +M+ G       E+A  LF +M  R V+  
Sbjct: 386 LIDMYSKRGRLEDALEVF-EISGRSVDHWNAMICGLAVHGCGELALKLFWEMERRLVVPD 444

Query: 121 NVMMAG----CVQNGNSIKAIKIFHQLLIEGNLDP 29
           ++   G    C  +G   + +  F  +  + NL+P
Sbjct: 445 DITFIGVLNACSHSGLVDEGLMCFEMMKRDYNLEP 479


>gb|AKH05179.1| chlororespiratory reduction 4 [Francoa sonchifolia]
          Length = 638

 Score =  227 bits (579), Expect = 2e-57
 Identities = 109/180 (60%), Positives = 142/180 (78%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VFD+MPVRDSVS+NSMIDGYVK G ID AR LFD + ++EKNL++WNS+ISGYAR+E G 
Sbjct: 180 VFDKMPVRDSVSYNSMIDGYVKCGEIDSARLLFDYMPEKEKNLISWNSVISGYARLEDGF 239

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
           + A  LFD MPE+D  SWNS+IDG VK G+++DA+DLF +MPERDV+TWA+M+ G+VK  
Sbjct: 240 KTAWELFDTMPEKDSASWNSLIDGCVKRGKMDDAHDLFNRMPERDVITWANMIDGFVKLG 299

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
           ++++A+ LFD+MPERDVIA N MMAG VQNG   +A++IFH +     L PD+ T+   L
Sbjct: 300 NVDIARELFDQMPERDVIACNAMMAGYVQNGYCREALEIFHNMQTLNCLSPDNVTLLIVL 359



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 44/215 (20%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +F+RMP RD ++W +MIDG+VK G +D+ARELFD++   E++++  N+M++GY +  G  
Sbjct: 276 LFNRMPERDVITWANMIDGFVKLGNVDIARELFDQMP--ERDVIACNAMMAGYVQ-NGYC 332

Query: 361 EAARGLFDRMPERDVVSWNS---------------------------------------- 302
             A  +F  M   + +S ++                                        
Sbjct: 333 REALEIFHNMQTLNCLSPDNVTLLIVLSAAAQLGQFDEGVAAHSYIKENRFTLSGKLGVA 392

Query: 301 MIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMP----ERD 134
           +ID Y KCG +E+A  +F+ + +++V  W +++ G     S EMA  LF +M     + D
Sbjct: 393 LIDMYSKCGDIENAMLVFENIEKKEVDHWNAIIGGLAIHGSGEMAFELFMEMEKLCVKPD 452

Query: 133 VIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDP 29
            I +  ++  C   G   + +  F  L     L+P
Sbjct: 453 DITFISVLNACGHAGLVKEGVMCFEILRRVHKLEP 487



 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
 Frame = -2

Query: 349 GLFDRMP-ERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLE 173
           GL  +M  +RDV   NS+I  Y++CG +E A  +F KMP RD V++ SM+ GYVK   ++
Sbjct: 147 GLLRKMEFDRDVFLQNSLIGLYLRCGCVEFARQVFDKMPVRDSVSYNSMIDGYVKCGEID 206

Query: 172 MAQHLFDKMPERD--VIAWNVMMAG 104
            A+ LFD MPE++  +I+WN +++G
Sbjct: 207 SARLLFDYMPEKEKNLISWNSVISG 231


>ref|XP_010524367.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Tarenaya hassleriana]
          Length = 613

 Score =  226 bits (577), Expect = 4e-57
 Identities = 108/180 (60%), Positives = 137/180 (76%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +FDR+P RDSVS+NSMIDGYVK G+I+ A ELFD + +EEKNL++WNSMISGYA+   GL
Sbjct: 180 IFDRIPQRDSVSYNSMIDGYVKCGLIECAAELFDLMSEEEKNLISWNSMISGYAQTADGL 239

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             AR LFD MPE+D++SWNSMIDG VK G++EDA DLF  MP RDVVTWA+M+ GY K  
Sbjct: 240 NMARKLFDEMPEKDLISWNSMIDGCVKHGKMEDAMDLFDVMPRRDVVTWATMIDGYAKLG 299

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +  A+ LF++MP+RDV+  N MMAG  QNG  ++A+KIF  +  EG+L PD TT+   L
Sbjct: 300 QVHQAKSLFEQMPQRDVVVCNSMMAGYTQNGYYMEALKIFDYMEREGSLSPDETTLVIVL 359



 Score =  115 bits (288), Expect = 1e-23
 Identities = 60/122 (49%), Positives = 86/122 (70%), Gaps = 3/122 (2%)
 Frame = -2

Query: 418 NLVTWNSMISGYARVEGGLEAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKM 239
           NL   N +I  Y R  G L  AR +FDR+P+RD VS+NSMIDGYVKCG +E A +LF  M
Sbjct: 157 NLFLQNGLIRLYLRC-GCLGLARQIFDRIPQRDSVSYNSMIDGYVKCGLIECAAELFDLM 215

Query: 238 --PERDVVTWASMVHGYVK-SESLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIK 68
              E+++++W SM+ GY + ++ L MA+ LFD+MPE+D+I+WN M+ GCV++G    A+ 
Sbjct: 216 SEEEKNLISWNSMISGYAQTADGLNMARKLFDEMPEKDLISWNSMIDGCVKHGKMEDAMD 275

Query: 67  IF 62
           +F
Sbjct: 276 LF 277


>gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  226 bits (577), Expect = 4e-57
 Identities = 110/180 (61%), Positives = 139/180 (77%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VFDRM  RDSVS+NSMIDGYVK G+I+ ARELFD +  E+KNL++WNSMI+GYA+   G+
Sbjct: 180 VFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQRADGV 239

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
           + A  LFD MPE+D++SWNS+IDGYVK GR+EDA DLF KMP RDVVTWA+MV GY K  
Sbjct: 240 DIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLG 299

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +  A+ LFD+MP+RDV+A+N MMAG VQN   ++AI IF+ +  E +L PD TT+   L
Sbjct: 300 FVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVL 359


>emb|CBI38872.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score =  226 bits (575), Expect = 7e-57
 Identities = 108/180 (60%), Positives = 141/180 (78%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +FDRM  RDSVS+NSMIDGYVK+GM+  ARELFD +  E+KNL++WNSMISGYAR E GL
Sbjct: 179 LFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGL 238

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             A  LF+ MP+RD++SWNSMIDG VKCG++E+A+ LF +MP+RDVV+WA+MV GY K  
Sbjct: 239 RVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLG 298

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +++A+ LFD+MPERDVI+ N MMAG VQNG+ ++A+  FH +L    L PD+ T+   L
Sbjct: 299 EIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITL 358



 Score =  105 bits (262), Expect = 1e-20
 Identities = 57/120 (47%), Positives = 83/120 (69%), Gaps = 3/120 (2%)
 Frame = -2

Query: 403 NSMISGYARVEGGLEAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMP--ER 230
           N ++  Y R  G L  AR LFDRM +RD VS+NSMIDGYVK G ++ A +LF  MP  ++
Sbjct: 161 NCLMCLYLRC-GCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQK 219

Query: 229 DVVTWASMVHGYVKS-ESLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQL 53
           ++++W SM+ GY +S E L +A  LF++MP+RD+I+WN M+ GCV+ G    A  +F+Q+
Sbjct: 220 NLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQM 279


>ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Vitis vinifera]
           gi|731421186|ref|XP_010661651.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Vitis vinifera]
           gi|731421189|ref|XP_010661652.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Vitis vinifera]
           gi|731421191|ref|XP_010661653.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Vitis vinifera]
          Length = 635

 Score =  226 bits (575), Expect = 7e-57
 Identities = 108/180 (60%), Positives = 141/180 (78%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +FDRM  RDSVS+NSMIDGYVK+GM+  ARELFD +  E+KNL++WNSMISGYAR E GL
Sbjct: 179 LFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGL 238

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             A  LF+ MP+RD++SWNSMIDG VKCG++E+A+ LF +MP+RDVV+WA+MV GY K  
Sbjct: 239 RVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLG 298

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +++A+ LFD+MPERDVI+ N MMAG VQNG+ ++A+  FH +L    L PD+ T+   L
Sbjct: 299 EIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITL 358



 Score =  105 bits (262), Expect = 1e-20
 Identities = 57/120 (47%), Positives = 83/120 (69%), Gaps = 3/120 (2%)
 Frame = -2

Query: 403 NSMISGYARVEGGLEAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMP--ER 230
           N ++  Y R  G L  AR LFDRM +RD VS+NSMIDGYVK G ++ A +LF  MP  ++
Sbjct: 161 NCLMCLYLRC-GCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQK 219

Query: 229 DVVTWASMVHGYVKS-ESLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQL 53
           ++++W SM+ GY +S E L +A  LF++MP+RD+I+WN M+ GCV+ G    A  +F+Q+
Sbjct: 220 NLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQM 279



 Score =  104 bits (259), Expect = 3e-20
 Identities = 62/203 (30%), Positives = 108/203 (53%), Gaps = 40/203 (19%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +F+ MP RD +SWNSMIDG VK G ++ A  LF+++   ++++V+W +M+ GYA++ G +
Sbjct: 244 LFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMP--KRDVVSWANMVDGYAKL-GEI 300

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERD---------VVTWAS 209
           + ARGLFD MPERDV+S N+M+ GYV+ G L +A + F  M  R          ++T ++
Sbjct: 301 DIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSA 360

Query: 208 -------------------------------MVHGYVKSESLEMAQHLFDKMPERDVIAW 122
                                          ++  Y K  S++ A  +F+ + ++ +  W
Sbjct: 361 IAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHW 420

Query: 121 NVMMAGCVQNGNSIKAIKIFHQL 53
           N ++ G   +G    A ++F ++
Sbjct: 421 NAIIGGLAIHGLGEVAFELFMEM 443


>gb|AHB18411.1| pentatricopeptide repeat-containing protein [Gossypium hirsutum]
          Length = 637

 Score =  226 bits (575), Expect = 7e-57
 Identities = 104/180 (57%), Positives = 142/180 (78%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +FDRM +RDSVS+NSMIDGY+K GMID+A+ELFD +  E KNL+TWNSMISGY +++ G+
Sbjct: 179 LFDRMSMRDSVSYNSMIDGYIKRGMIDLAKELFDVMPLENKNLITWNSMISGYTQLKDGM 238

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             A GLF++MP+RD++SWNSMI+G+VKCG +EDA  LF KMP RDVV+WA+M++GY K  
Sbjct: 239 GLALGLFEKMPDRDLISWNSMINGFVKCGNMEDAQILFDKMPRRDVVSWANMINGYAKVG 298

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +++A+ LF++M ERD++  N MMAGCVQNG   +A++IF+ L    +L PD  T+  AL
Sbjct: 299 KIDLARSLFNEMSERDIVVCNAMMAGCVQNGYCGEALEIFYHLPRNCSLQPDSATLLIAL 358



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
 Frame = -2

Query: 322 DVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMP 143
           D+   N +I  Y++CG +  A  LF +M  RD V++ SM+ GY+K   +++A+ LFD MP
Sbjct: 156 DLFLQNCLISYYLRCGFIGYARQLFDRMSMRDSVSYNSMIDGYIKRGMIDLAKELFDVMP 215

Query: 142 --ERDVIAWNVMMAGCVQ 95
              +++I WN M++G  Q
Sbjct: 216 LENKNLITWNSMISGYTQ 233


>ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Cucumis sativus]
           gi|700201470|gb|KGN56603.1| hypothetical protein
           Csa_3G126180 [Cucumis sativus]
          Length = 638

 Score =  225 bits (574), Expect = 9e-57
 Identities = 99/180 (55%), Positives = 145/180 (80%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VFDRMP++DSVS+NSMIDGYVK+G ID+ARELFD +  E+KNL++WNSM+ G+A+ + G+
Sbjct: 182 VFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGI 241

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             A  LF++MPERD+VSWN++I G+ KCGR+E A+ LF +MP+RDV++W++M+ GY K  
Sbjct: 242 GLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLG 301

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +++A+ LFD+MP++DV+A+N +MAG  QNG   +A++IFH++  + NL PD TT+  AL
Sbjct: 302 DIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVAL 361



 Score = 71.2 bits (173), Expect = 3e-10
 Identities = 34/88 (38%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
 Frame = -2

Query: 307 NSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMP--ERD 134
           N +I  Y++CG +E A  +F +MP +D V++ SM+ GYVKS ++++A+ LFD MP  +++
Sbjct: 164 NCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKN 223

Query: 133 VIAWNVMMAGCVQNGNSI-KAIKIFHQL 53
           +I+WN M+ G  Q  + I  A+++F ++
Sbjct: 224 LISWNSMLGGFAQTKDGIGLALELFEKM 251


>ref|XP_012489757.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Gossypium raimondii]
           gi|763773983|gb|KJB41106.1| hypothetical protein
           B456_007G090700 [Gossypium raimondii]
          Length = 637

 Score =  225 bits (573), Expect = 1e-56
 Identities = 104/180 (57%), Positives = 142/180 (78%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +FDRM +RDSVS+NSMIDGY+K GMID+A+ELFD +  E+KNL+TWNSMISGY +++ G+
Sbjct: 179 LFDRMSMRDSVSYNSMIDGYIKRGMIDLAKELFDVMPLEKKNLITWNSMISGYTQLKDGM 238

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             A GLF++MP+RD++SWNSMI+GYVKCG +EDA  LF KMP  DVV+WA+M++GY K  
Sbjct: 239 GLALGLFEKMPDRDLISWNSMINGYVKCGNMEDAQILFDKMPRWDVVSWANMINGYAKVG 298

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +++A+ LF++M ERD++  N MMAGCVQNG   +A++IF+ L    +L PD  T+  AL
Sbjct: 299 KIDLARSLFNEMSERDIVVCNAMMAGCVQNGYCGEALEIFYHLQRNCSLQPDSATLLIAL 358



 Score = 62.4 bits (150), Expect = 1e-07
 Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
 Frame = -2

Query: 322 DVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMP 143
           D+   N +I  Y++CG +  A  LF +M  RD V++ SM+ GY+K   +++A+ LFD MP
Sbjct: 156 DLFLQNCLISYYLRCGFIGYARQLFDRMSMRDSVSYNSMIDGYIKRGMIDLAKELFDVMP 215

Query: 142 --ERDVIAWNVMMAGCVQ 95
             ++++I WN M++G  Q
Sbjct: 216 LEKKNLITWNSMISGYTQ 233


>gb|AKH05187.1| chlororespiratory reduction 4 [Monsonia marlothii]
          Length = 638

 Score =  224 bits (572), Expect = 1e-56
 Identities = 111/180 (61%), Positives = 139/180 (77%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VF RM   DSVS+NSMIDGYVK GMID AR LFD +  EEKNL +WNSMI GYA+ + GL
Sbjct: 182 VFSRMEKLDSVSYNSMIDGYVKCGMIDSARLLFDCMPVEEKNLNSWNSMIFGYAQSKDGL 241

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             AR +FD MPERD+VSWNSMIDGYVKCG++EDA++LF +MP+RD V+WASM+ GY KS 
Sbjct: 242 GIARKVFDEMPERDLVSWNSMIDGYVKCGKMEDAHELFDRMPKRDAVSWASMIDGYAKSG 301

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
           S+E+A  +F+KMP+RDV+A N MMA  +QNG  ++A+  FH +  E NL PD TT++  L
Sbjct: 302 SIEIAAAMFEKMPDRDVVACNAMMARYLQNGLFMEALTTFHYMKAECNLIPDATTLSIVL 361



 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 43/214 (20%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +FDRMP RD+VSW SMIDGY K+G I++A  +F+++ D  +++V  N+M++ Y +    +
Sbjct: 278 LFDRMPKRDAVSWASMIDGYAKSGSIEIAAAMFEKMPD--RDVVACNAMMARYLQNGLFM 335

Query: 361 EAA------RGLFDRMPERDVVS---------------------------------WNSM 299
           EA       +   + +P+   +S                                   ++
Sbjct: 336 EALTTFHYMKAECNLIPDATTLSIVLSAIAQLGHLDEGIAIHVYIEENRVFLGGKVGVAL 395

Query: 298 IDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMP----ERDV 131
           ID Y KCG +E+A  +F  +  +DV  W +M+ G       E+A  LF +M     E D 
Sbjct: 396 IDMYSKCGSIENAMLVFGDIKVKDVDHWNAMIGGLAVHGLGELAFDLFMEMERICVEPDD 455

Query: 130 IAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDP 29
           I + V++  C  +G   + +  F  +     LDP
Sbjct: 456 ITFIVVLNACAHSGLVKEGLMCFEIMRRVHGLDP 489


>gb|AKH05188.1| chlororespiratory reduction 4 [Monsonia emarginata]
          Length = 638

 Score =  224 bits (570), Expect = 3e-56
 Identities = 112/180 (62%), Positives = 139/180 (77%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VF RM   DSVS+NSMIDGYVK GMID AR LFD +  EEKNL +WNSMI GYA+ + GL
Sbjct: 182 VFSRMEKLDSVSYNSMIDGYVKCGMIDSARLLFDSMPVEEKNLNSWNSMIFGYAQYKDGL 241

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
           E AR +FD MPERD+VSWNSMIDGYVKCG++E A++LF +MP+RD V+WASM+ GY KS 
Sbjct: 242 EIARKVFDEMPERDLVSWNSMIDGYVKCGKMEGAHELFNRMPKRDAVSWASMIDGYAKSG 301

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
           S+E+A  +F++M  RDVIA N MMAG +QNG S++A+  FH +  E NL PD TT++  L
Sbjct: 302 SIEIAAAMFEEMLGRDVIACNTMMAGYLQNGLSMEALATFHYMKGECNLIPDATTLSIVL 361


>ref|XP_007052071.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao] gi|508704332|gb|EOX96228.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative [Theobroma cacao]
          Length = 637

 Score =  223 bits (567), Expect = 6e-56
 Identities = 105/180 (58%), Positives = 140/180 (77%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +FDRM  RDSVS+NSMIDGY+K GMI +ARELF+ +  E+KNL+TWNSMISGYA++E G+
Sbjct: 179 LFDRMCRRDSVSYNSMIDGYIKTGMIHLARELFEFMPMEDKNLITWNSMISGYAQLEYGM 238

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             A  LF+ MP+RD++SWNSMI+G+VKCG +EDA  LF KMP+RDVV+WA+M++GY K  
Sbjct: 239 VMALKLFEEMPDRDLISWNSMINGFVKCGNMEDAQALFVKMPKRDVVSWANMINGYAKVG 298

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +++A+ LFD+MPERDV+  N MM G VQNG   +A++IF+ L    NL PD+ T+   L
Sbjct: 299 KIDLARRLFDEMPERDVVVCNAMMGGYVQNGYCSEALEIFYHLQRYDNLQPDNATLLIVL 358



 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 39/176 (22%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYA------ 380
           +F +MP RD VSW +MI+GY K G ID+AR LFD +   E+++V  N+M+ GY       
Sbjct: 275 LFVKMPKRDVVSWANMINGYAKVGKIDLARRLFDEMP--ERDVVVCNAMMGGYVQNGYCS 332

Query: 379 ---------------------------------RVEGGLEAARGLFDRMPERDVVSWNSM 299
                                            R++ GL   + L +           ++
Sbjct: 333 EALEIFYHLQRYDNLQPDNATLLIVLSAIAQLGRIDKGLAIHQYLEENKFSLSGRLGVAL 392

Query: 298 IDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMPERDV 131
           ID Y KCG +++   +F+ + +R V  W +M+ G       E+A  L  +M    V
Sbjct: 393 IDMYSKCGSVKNGMLVFESIEDRSVDHWNAMIGGLAIHGLGELAFSLLIEMERLSV 448


>gb|AKH05186.1| chlororespiratory reduction 4, partial [Masdevallia picturata]
          Length = 612

 Score =  222 bits (566), Expect = 7e-56
 Identities = 102/180 (56%), Positives = 139/180 (77%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VFDRM  +DSVSWNSMI GY KNG +D ARELF  ++D E++LV+WN+MI GYA    G+
Sbjct: 163 VFDRMLQKDSVSWNSMIHGYAKNGRMDKARELFGMMEDWERDLVSWNTMIRGYATTSNGI 222

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
           + AR +FD MP RD+VSWN MIDGYVK GR+E+A  LF+ MP +DV++WAS++ GY++  
Sbjct: 223 DDAREVFDEMPVRDLVSWNLMIDGYVKLGRMEEAAALFEIMPAKDVISWASLIGGYMEVG 282

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            + +A+ LFD MPERD++ WN+M+AG V+NG+ ++A+ +FHQ+  + NL PD TTIAT L
Sbjct: 283 RVSLARRLFDDMPERDLVTWNMMLAGYVKNGSFVEALDLFHQMRTQVNLTPDATTIATVL 342



 Score = 70.9 bits (172), Expect = 4e-10
 Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 44/215 (20%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +F+ MP +D +SW S+I GY++ G + +AR LFD  D  E++LVTWN M++GY +  G  
Sbjct: 259 LFEIMPAKDVISWASLIGGYMEVGRVSLARRLFD--DMPERDLVTWNMMLAGYVK-NGSF 315

Query: 361 EAARGLFDRM-------PE-----------------RDVVSWN----------------S 302
             A  LF +M       P+                 RD V+ +                +
Sbjct: 316 VEALDLFHQMRTQVNLTPDATTIATVLSAISELGRIRDGVAVHEYVKRNHFPLHGKLGVA 375

Query: 301 MIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMP----ERD 134
           +ID Y KCG LEDA  +F+   +  V  W +++ G       E+A  LF  M     + D
Sbjct: 376 LIDMYAKCGHLEDALLVFEASGD-TVDHWNAIIGGLAIHGQGELALELFHAMQNLLLKPD 434

Query: 133 VIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDP 29
            I +  ++  C   G   + ++ F  +     L+P
Sbjct: 435 DITFIGVLNACSHAGLVDEGLECFEIMKSVWGLEP 469


>ref|XP_002320719.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550323642|gb|EEE99034.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 643

 Score =  222 bits (566), Expect = 7e-56
 Identities = 105/180 (58%), Positives = 140/180 (77%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VFDRMP RDSVS+NSMIDGYVK G ID+AR +FD +  EE+NL++WNS+I GYA+ E G+
Sbjct: 184 VFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGI 243

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             A  LF +MPERD++SWNSMIDG VKCGR+EDA  LF +MP RD+V+WA+M+ GY K+ 
Sbjct: 244 LVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNG 303

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +++A+ LFD+MPERDV+A+N MM G VQNG  ++A+ IF+ +  +GN   D+ T+  AL
Sbjct: 304 RVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIAL 363



 Score = 68.9 bits (167), Expect = 1e-09
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 40/196 (20%)
 Frame = -2

Query: 520 RDSVSWNSMIDGYV-----KNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGLEA 356
           +D   WN++I  Y      K  M  V+  L +    ++  L       S    V+ G++ 
Sbjct: 90  KDPFLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQI 149

Query: 355 ARGLFDRMP-ERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSES 179
             GL  ++    D+   N +I  YVKCG L  A  +F +MP+RD V++ SM+ GYVK   
Sbjct: 150 -HGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGR 208

Query: 178 LEMAQHLFD----------------------------------KMPERDVIAWNVMMAGC 101
           +++A+ +FD                                  KMPERD+I+WN M+ GC
Sbjct: 209 IDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGC 268

Query: 100 VQNGNSIKAIKIFHQL 53
           V+ G    A  +F ++
Sbjct: 269 VKCGRMEDAQGLFDRM 284


>ref|XP_011034218.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Populus euphratica]
          Length = 641

 Score =  222 bits (565), Expect = 1e-55
 Identities = 106/180 (58%), Positives = 140/180 (77%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VFDRMP RDSVS+NSMIDGYVK G ID+AR +FD +  EE+NL++WNS+I GYA+ E G+
Sbjct: 182 VFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGI 241

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             A  LF+ MPERD++SWNSMIDG VKCGR+EDA  LF +MP RD+V+WA+M+ GY K+ 
Sbjct: 242 LVAWQLFENMPERDLISWNSMIDGCVKCGRMEDAQCLFDRMPNRDIVSWANMIDGYAKNG 301

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +++A+ LFD+MPERDV+A N MM G VQNG  ++A+ IF+ +L  GN+  D+ T+  AL
Sbjct: 302 RVDIARCLFDEMPERDVVACNAMMGGYVQNGYCMEALGIFYGMLSAGNILLDNATLLIAL 361



 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 34/83 (40%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
 Frame = -2

Query: 322 DVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMP 143
           D+   N +I  YVKCG L  A  +F +MP+RD V++ SM+ GYVK   +++A+ +FD +P
Sbjct: 159 DLFLQNCLISFYVKCGCLVRARQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIP 218

Query: 142 --ERDVIAWNVMMAGCVQNGNSI 80
             ER++I+WN ++ G  Q+ + I
Sbjct: 219 LEERNLISWNSLIRGYAQSEDGI 241


>ref|XP_008438168.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic [Cucumis melo]
          Length = 638

 Score =  222 bits (565), Expect = 1e-55
 Identities = 99/180 (55%), Positives = 143/180 (79%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VFD MPV+DSVS+NSMIDGYVK+G ID+ARELFD +   +KNL++WNSM+ G+A+ + G+
Sbjct: 182 VFDTMPVQDSVSYNSMIDGYVKSGTIDLARELFDSMPLGDKNLISWNSMLGGFAQTKDGI 241

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
             A  LF++MPERD+VSWN++I G+ KCGR+E A+ LF +MP+RDV++W++M+ GY K  
Sbjct: 242 GLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLG 301

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
            +++A+ LFD+MP++DV+A+N MMAG  QNG   +A++IFH++  + NL PD TT+  AL
Sbjct: 302 DIKVARTLFDEMPDKDVVAFNTMMAGYAQNGYYTEALEIFHKMQRQSNLSPDETTLVVAL 361



 Score =  105 bits (263), Expect = 1e-20
 Identities = 62/206 (30%), Positives = 112/206 (54%), Gaps = 40/206 (19%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +F++MP RD VSWN++I G+ K G I+ A  LF+R+   ++++++W++MI GYA++ G +
Sbjct: 247 LFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMP--KRDVISWSNMIDGYAKL-GDI 303

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKM-------PERDVVTWA--- 212
           + AR LFD MP++DVV++N+M+ GY + G   +A ++F KM       P+   +  A   
Sbjct: 304 KVARTLFDEMPDKDVVAFNTMMAGYAQNGYYTEALEIFHKMQRQSNLSPDETTLVVALSA 363

Query: 211 ------------------------------SMVHGYVKSESLEMAQHLFDKMPERDVIAW 122
                                         +++  Y K  S+E A+ +FD + ++ +  W
Sbjct: 364 ISQLGHIEKAASMHNYFVENGISVTGKVAVALIDMYSKCGSIENAKLIFDGVDQKGIDHW 423

Query: 121 NVMMAGCVQNGNSIKAIKIFHQLLIE 44
           N M++G  +NG      K+  ++L+E
Sbjct: 424 NAMISGMARNGLG----KLAFEMLVE 445



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 40/172 (23%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +F+RMP RD +SW++MIDGY K G I VAR LFD + D  K++V +N+M++GYA+  G  
Sbjct: 278 LFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPD--KDVVAFNTMMAGYAQ-NGYY 334

Query: 361 EAARGLFDRMPERDVVSWN----------------------------------------S 302
             A  +F +M  +  +S +                                        +
Sbjct: 335 TEALEIFHKMQRQSNLSPDETTLVVALSAISQLGHIEKAASMHNYFVENGISVTGKVAVA 394

Query: 301 MIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKM 146
           +ID Y KCG +E+A  +F  + ++ +  W +M+ G  ++   ++A  +  +M
Sbjct: 395 LIDMYSKCGSIENAKLIFDGVDQKGIDHWNAMISGMARNGLGKLAFEMLVEM 446



 Score = 70.5 bits (171), Expect = 5e-10
 Identities = 34/88 (38%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
 Frame = -2

Query: 307 NSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMP--ERD 134
           N +I  Y++CG +E A  +F  MP +D V++ SM+ GYVKS ++++A+ LFD MP  +++
Sbjct: 164 NCLIAMYLRCGDIEFARQVFDTMPVQDSVSYNSMIDGYVKSGTIDLARELFDSMPLGDKN 223

Query: 133 VIAWNVMMAGCVQNGNSI-KAIKIFHQL 53
           +I+WN M+ G  Q  + I  A+++F ++
Sbjct: 224 LISWNSMLGGFAQTKDGIGLALELFEKM 251


>gb|AKH05180.1| chlororespiratory reduction 4 [Geranium incanum]
          Length = 637

 Score =  221 bits (564), Expect = 1e-55
 Identities = 111/180 (61%), Positives = 136/180 (75%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           VF RM   DSVS+NSMIDGYVK G+I+ A  LFD +  EEKNL +WNSMI GYA+   GL
Sbjct: 181 VFTRMERLDSVSYNSMIDGYVKCGLIESAGLLFDSMPVEEKNLNSWNSMICGYAQSGDGL 240

Query: 361 EAARGLFDRMPERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSE 182
           E AR LFD MPERD+VSWNSMIDG VKCG++EDA  LF +MP+RD VTWASM++GY KS 
Sbjct: 241 EVARKLFDEMPERDLVSWNSMIDGCVKCGKMEDARGLFDRMPKRDAVTWASMIYGYAKSG 300

Query: 181 SLEMAQHLFDKMPERDVIAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDPDHTTIATAL 2
           S+E+A+ +F+KMP RDVI +N MM G +QNG  ++A+ IFH +  E NL PD TT+   L
Sbjct: 301 SMEIAEAMFEKMPYRDVITYNTMMTGYLQNGLFMEALTIFHYMKGECNLAPDDTTLLIVL 360



 Score = 72.8 bits (177), Expect = 9e-11
 Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 43/214 (20%)
 Frame = -2

Query: 541 VFDRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRVDDEEKNLVTWNSMISGYARVEGGL 362
           +FDRMP RD+V+W SMI GY K+G +++A  +F+++    ++++T+N+M++GY +    +
Sbjct: 277 LFDRMPKRDAVTWASMIYGYAKSGSMEIAEAMFEKMP--YRDVITYNTMMTGYLQNGLFM 334

Query: 361 EAA------RGLFDRMPE-----------------------RDVVSWN----------SM 299
           EA       +G  +  P+                        D +  N          S+
Sbjct: 335 EALTIFHYMKGECNLAPDDTTLLIVLSAIAQLGHLDEGVEIHDYIERNRIFLGGKVGVSL 394

Query: 298 IDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGYVKSESLEMAQHLFDKMP----ERDV 131
           ID Y KCG +E+A  +F  + E+DV  W +M+ G       E A  LF +M     E D 
Sbjct: 395 IDMYSKCGSVENAMFVFGNIKEKDVDHWNAMIVGLAVHGLGESALDLFMEMERICVEPDD 454

Query: 130 IAWNVMMAGCVQNGNSIKAIKIFHQLLIEGNLDP 29
           I +  +++ C   G   + +  F  +     L+P
Sbjct: 455 ITFIGVLSACAHAGLVKEGMMCFEIMRRVHKLEP 488



 Score = 71.2 bits (173), Expect = 3e-10
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 9/170 (5%)
 Frame = -2

Query: 535 DRMPVRDSVSWNSMIDGYVKNGMIDVARELFDRV--DDEEKNLVTWNSMISGYAR---VE 371
           DR  + D   WN+++  Y        A  LF  +  +    +  +++ ++   +R   V 
Sbjct: 82  DRRDLEDPFLWNAVMKSYSHGSEPVEALTLFSEMVGNGVSVDRFSFSLVLKACSRLGLVR 141

Query: 370 GGLEAARGLFDRMP-ERDVVSWNSMIDGYVKCGRLEDAYDLFKKMPERDVVTWASMVHGY 194
            GL+   GL  ++    D+   N +I  Y+KCG LE A+ +F +M   D V++ SM+ GY
Sbjct: 142 EGLQI-HGLLRKIELGSDLFLQNCLISWYLKCGCLELAHRVFTRMERLDSVSYNSMIDGY 200

Query: 193 VKSESLEMAQHLFDKMP--ERDVIAWNVMMAGCVQNGNSIK-AIKIFHQL 53
           VK   +E A  LFD MP  E+++ +WN M+ G  Q+G+ ++ A K+F ++
Sbjct: 201 VKCGLIESAGLLFDSMPVEEKNLNSWNSMICGYAQSGDGLEVARKLFDEM 250