BLASTX nr result
ID: Cinnamomum24_contig00023681
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00023681
(1096 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010917993.1| PREDICTED: DNA-directed RNA polymerase III s... 243 2e-61
ref|XP_010917991.1| PREDICTED: DNA-directed RNA polymerase III s... 243 2e-61
ref|XP_008798504.1| PREDICTED: DNA-directed RNA polymerase III s... 241 8e-61
ref|XP_010278155.1| PREDICTED: DNA-directed RNA polymerase III s... 236 2e-59
ref|XP_010265332.1| PREDICTED: DNA-directed RNA polymerase III s... 236 2e-59
ref|XP_010917992.1| PREDICTED: DNA-directed RNA polymerase III s... 236 2e-59
ref|XP_009403932.1| PREDICTED: DNA-directed RNA polymerase III s... 230 2e-57
ref|XP_011621603.1| PREDICTED: DNA-directed RNA polymerase III s... 225 4e-56
ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp.... 225 6e-56
ref|XP_007050414.1| RNA polymerase Rpb7 N-terminal domain-contai... 224 1e-55
ref|XP_010475430.1| PREDICTED: DNA-directed RNA polymerase III s... 223 2e-55
ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III s... 223 2e-55
ref|XP_010087136.1| DNA-directed RNA polymerase III subunit rpc8... 221 6e-55
ref|XP_003629059.2| DNA-directed RNA polymerase III protein [Med... 221 6e-55
ref|XP_012575494.1| PREDICTED: DNA-directed RNA polymerase III s... 221 6e-55
ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III s... 220 1e-54
ref|XP_010038840.1| PREDICTED: DNA-directed RNA polymerase III s... 219 2e-54
ref|XP_006479590.1| PREDICTED: DNA-directed RNA polymerase III s... 219 2e-54
ref|XP_008365292.1| PREDICTED: DNA-directed RNA polymerase III s... 219 4e-54
ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containin... 218 5e-54
>ref|XP_010917993.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X3
[Elaeis guineensis] gi|743775232|ref|XP_010917994.1|
PREDICTED: DNA-directed RNA polymerase III subunit RPC8
isoform X3 [Elaeis guineensis]
Length = 188
Score = 243 bits (621), Expect = 2e-61
Identities = 117/187 (62%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S IEH + +PPHLLS PL++A+K ELERLFLDKVI +LGLC+SVYDI +E GFI PG+
Sbjct: 4 LSLIEHNLPVPPHLLSRPLLDAVKEELERLFLDKVISSLGLCVSVYDIQSIEGGFIFPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRI-EN 553
G+ TYKV+FRLVMFRPFVGEIL G+IEKS DGLRL+LGFF+DI+VPVHL+ P ++ +
Sbjct: 64 GSSTYKVVFRLVMFRPFVGEILGGRIEKSSADGLRLSLGFFNDIYVPVHLLQQPCKLGPD 123
Query: 554 GIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITASIFEDG 733
IW+W + E+ LDLN+++ FRV IKYP IP E K+DAEPF+PMEI I+ DG
Sbjct: 124 NIWIW----QHECGELTLDLNEEVHFRVADIKYPSIPIEQKEDAEPFAPMEIIGDIYGDG 179
Query: 734 LGPVSWW 754
LG +SWW
Sbjct: 180 LGLLSWW 186
>ref|XP_010917991.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1
[Elaeis guineensis]
Length = 210
Score = 243 bits (621), Expect = 2e-61
Identities = 117/187 (62%), Positives = 147/187 (78%), Gaps = 1/187 (0%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S IEH + +PPHLLS PL++A+K ELERLFLDKVI +LGLC+SVYDI +E GFI PG+
Sbjct: 26 LSLIEHNLPVPPHLLSRPLLDAVKEELERLFLDKVISSLGLCVSVYDIQSIEGGFIFPGD 85
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRI-EN 553
G+ TYKV+FRLVMFRPFVGEIL G+IEKS DGLRL+LGFF+DI+VPVHL+ P ++ +
Sbjct: 86 GSSTYKVVFRLVMFRPFVGEILGGRIEKSSADGLRLSLGFFNDIYVPVHLLQQPCKLGPD 145
Query: 554 GIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITASIFEDG 733
IW+W + E+ LDLN+++ FRV IKYP IP E K+DAEPF+PMEI I+ DG
Sbjct: 146 NIWIW----QHECGELTLDLNEEVHFRVADIKYPSIPIEQKEDAEPFAPMEIIGDIYGDG 201
Query: 734 LGPVSWW 754
LG +SWW
Sbjct: 202 LGLLSWW 208
>ref|XP_008798504.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Phoenix
dactylifera] gi|672157578|ref|XP_008798505.1| PREDICTED:
DNA-directed RNA polymerase III subunit RPC8 [Phoenix
dactylifera] gi|672157580|ref|XP_008798506.1| PREDICTED:
DNA-directed RNA polymerase III subunit RPC8 [Phoenix
dactylifera] gi|672157582|ref|XP_008798507.1| PREDICTED:
DNA-directed RNA polymerase III subunit RPC8 [Phoenix
dactylifera] gi|672157584|ref|XP_008798508.1| PREDICTED:
DNA-directed RNA polymerase III subunit RPC8 [Phoenix
dactylifera] gi|672157586|ref|XP_008798509.1| PREDICTED:
DNA-directed RNA polymerase III subunit RPC8 [Phoenix
dactylifera]
Length = 188
Score = 241 bits (615), Expect = 8e-61
Identities = 117/187 (62%), Positives = 145/187 (77%), Gaps = 1/187 (0%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S IEH + +PPHLL+ PL +A+K ELERLFLDKVI NLGLCISVYDI +E GFI PG+
Sbjct: 4 LSLIEHNLPVPPHLLNRPLRDAIKEELERLFLDKVISNLGLCISVYDIQSIEGGFIFPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIENG 556
G+ TYKV+FRLVMFRPFVGEIL G+IEKS DGLRL+LGFF+DI+VPVHL+ P ++ G
Sbjct: 64 GSSTYKVVFRLVMFRPFVGEILSGRIEKSNADGLRLSLGFFNDIYVPVHLLQQPCKLGPG 123
Query: 557 -IWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITASIFEDG 733
IW+W + E+ LDL +++ FRV I+YP IP E K+DAEPF+PMEI I+ DG
Sbjct: 124 DIWIW----QHECGELTLDLKEEVHFRVADIRYPSIPIEQKEDAEPFAPMEIIGDIYGDG 179
Query: 734 LGPVSWW 754
LG +SWW
Sbjct: 180 LGLLSWW 186
>ref|XP_010278155.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Nelumbo nucifera] gi|720071765|ref|XP_010278156.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC8-like [Nelumbo nucifera]
Length = 193
Score = 236 bits (603), Expect = 2e-59
Identities = 114/193 (59%), Positives = 145/193 (75%), Gaps = 7/193 (3%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S IEH + LPPHLL+LPL EA+KGELE LFLDKVIPNLGLCIS+YDI ++DGFI PG+
Sbjct: 4 LSLIEHTLCLPPHLLNLPLDEAIKGELETLFLDKVIPNLGLCISIYDIRDIKDGFIYPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRI--- 547
GA TY V FRLVMFRPFVGEI+ GK++ S +GL+L++ FF DIH+PVHL+P+P+ +
Sbjct: 64 GASTYTVQFRLVMFRPFVGEIIVGKLKSSDANGLKLSISFFDDIHIPVHLLPNPSSLMPN 123
Query: 548 ----ENGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITA 715
G+W W + E + +D +IRFRV SI YPPIP E +K+A+PF+PM IT
Sbjct: 124 PENKHQGVWSWEFQDE----QYPIDGKDEIRFRVHSISYPPIPIEQEKEAKPFAPMVITG 179
Query: 716 SIFEDGLGPVSWW 754
S+ DGLGP+SWW
Sbjct: 180 SLDYDGLGPISWW 192
>ref|XP_010265332.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Nelumbo nucifera] gi|720029819|ref|XP_010265333.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC8-like [Nelumbo nucifera]
gi|720029822|ref|XP_010265334.1| PREDICTED: DNA-directed
RNA polymerase III subunit RPC8-like [Nelumbo nucifera]
gi|720029825|ref|XP_010265335.1| PREDICTED: DNA-directed
RNA polymerase III subunit RPC8-like [Nelumbo nucifera]
Length = 193
Score = 236 bits (603), Expect = 2e-59
Identities = 115/193 (59%), Positives = 144/193 (74%), Gaps = 7/193 (3%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S IEH + LPPHLL LPL EA+KGELE LFLDKVIPNLGLCIS+YDI ++DGFI PG+
Sbjct: 4 LSLIEHTLRLPPHLLKLPLDEAIKGELEALFLDKVIPNLGLCISIYDIGDIKDGFIYPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRI--- 547
GA TY V FRL+MFRPFVGEI+ GK++ S +GL L++GFF DIH+PVHL+P+P+ +
Sbjct: 64 GASTYTVQFRLIMFRPFVGEIIVGKLKSSDANGLNLSVGFFDDIHIPVHLLPNPSSLTLD 123
Query: 548 ----ENGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITA 715
GIW W + E + +D +IRFRV SI YPPIP E +K+A+PF+PM IT
Sbjct: 124 PENKHEGIWTWEFQDE----QYPIDGKDEIRFRVHSISYPPIPIEQEKEAKPFAPMVITG 179
Query: 716 SIFEDGLGPVSWW 754
S+ DGLGP+SWW
Sbjct: 180 SLDYDGLGPISWW 192
>ref|XP_010917992.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X2
[Elaeis guineensis]
Length = 196
Score = 236 bits (602), Expect = 2e-59
Identities = 113/178 (63%), Positives = 141/178 (79%), Gaps = 1/178 (0%)
Frame = +2
Query: 224 LPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGEGAPTYKVIF 403
+PPHLLS PL++A+K ELERLFLDKVI +LGLC+SVYDI +E GFI PG+G+ TYKV+F
Sbjct: 21 VPPHLLSRPLLDAVKEELERLFLDKVISSLGLCVSVYDIQSIEGGFIFPGDGSSTYKVVF 80
Query: 404 RLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRI-ENGIWVWLYGS 580
RLVMFRPFVGEIL G+IEKS DGLRL+LGFF+DI+VPVHL+ P ++ + IW+W
Sbjct: 81 RLVMFRPFVGEILGGRIEKSSADGLRLSLGFFNDIYVPVHLLQQPCKLGPDNIWIW---- 136
Query: 581 EEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITASIFEDGLGPVSWW 754
+ E+ LDLN+++ FRV IKYP IP E K+DAEPF+PMEI I+ DGLG +SWW
Sbjct: 137 QHECGELTLDLNEEVHFRVADIKYPSIPIEQKEDAEPFAPMEIIGDIYGDGLGLLSWW 194
>ref|XP_009403932.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X1
[Musa acuminata subsp. malaccensis]
gi|694998317|ref|XP_009403937.1| PREDICTED: DNA-directed
RNA polymerase III subunit RPC8 isoform X1 [Musa
acuminata subsp. malaccensis]
Length = 188
Score = 230 bits (586), Expect = 2e-57
Identities = 108/187 (57%), Positives = 143/187 (76%), Gaps = 1/187 (0%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S IEH + LPPHLL+ PL++A+K ELERLFLDKV+ NLGLCIS+YDI +E GF+ PG+
Sbjct: 4 LSLIEHNLPLPPHLLNRPLLDAIKEELERLFLDKVLSNLGLCISIYDIRTIEGGFVFPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRI-EN 553
G+ TYKV+FRL+MFRP+VGEIL GK++ S +GL L+LGFF DI VPVHL+P +R+ ++
Sbjct: 64 GSSTYKVVFRLIMFRPYVGEILCGKLKASDANGLHLSLGFFDDIKVPVHLLPHKSRMGDD 123
Query: 554 GIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITASIFEDG 733
GIW+W E ++ +DL++++ FRV I YPPIP E +A PFSPMEI I+ DG
Sbjct: 124 GIWIW----EHECGDLPMDLDEEVHFRVTKINYPPIPLEQDANASPFSPMEIIGEIYGDG 179
Query: 734 LGPVSWW 754
LG +SWW
Sbjct: 180 LGLLSWW 186
>ref|XP_011621603.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Amborella
trichopoda]
Length = 188
Score = 225 bits (574), Expect = 4e-56
Identities = 106/188 (56%), Positives = 144/188 (76%), Gaps = 1/188 (0%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S +EH LP L++LPL ++++GELE+LFLDKVIPNLGLCISVYDI +E G I PGE
Sbjct: 4 LSLLEHTFRLPAELVALPLPQSIRGELEKLFLDKVIPNLGLCISVYDIRSIEGGLIWPGE 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNR-IEN 553
G+PTYKV FRLVMFRPF+GEIL G +++ DGL+++LGFF D+H+P +L P P+R +E+
Sbjct: 64 GSPTYKVTFRLVMFRPFMGEILVGNVKRLDKDGLQVSLGFFEDVHIPANLFPQPSRFMED 123
Query: 554 GIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITASIFEDG 733
G W W + NE ++ ++IRFRV +++YP IP + K +A+PF+PMEI +I +DG
Sbjct: 124 GTWEWDWDG----NEQYIYHFEKIRFRVHTVEYPTIPIDQKANAKPFAPMEIIGTIHDDG 179
Query: 734 LGPVSWWE 757
LGPVSWWE
Sbjct: 180 LGPVSWWE 187
>ref|XP_002889618.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335460|gb|EFH65877.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 204
Score = 225 bits (573), Expect = 6e-56
Identities = 106/194 (54%), Positives = 145/194 (74%), Gaps = 7/194 (3%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S++EH + +PPHLL+LPL +A+K L+ +FLDKV+ +LGLC+SVYDI +E GF++PG+
Sbjct: 4 LSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSVYDIKSIEGGFVLPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIE-- 550
GA TYKV FR+V+FRPFVGE++ K ++S +GLRLTLGFF DI+VP L+P PNR E
Sbjct: 64 GAATYKVGFRIVVFRPFVGEVIAAKFKESDSNGLRLTLGFFDDIYVPAPLMPKPNRCEPD 123
Query: 551 -----NGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITA 715
IWVW YG E + + +D + QI+FRV SI YP +P E +DA+PF+PM +T
Sbjct: 124 PYNRKQMIWVWEYG--EPLEDFIIDDSCQIKFRVESISYPSVPTERAEDAKPFAPMVVTG 181
Query: 716 SIFEDGLGPVSWWE 757
++ EDGLGPVSWW+
Sbjct: 182 NMDEDGLGPVSWWD 195
>ref|XP_007050414.1| RNA polymerase Rpb7 N-terminal domain-containing protein [Theobroma
cacao] gi|508702675|gb|EOX94571.1| RNA polymerase Rpb7
N-terminal domain-containing protein [Theobroma cacao]
Length = 210
Score = 224 bits (571), Expect = 1e-55
Identities = 115/198 (58%), Positives = 147/198 (74%), Gaps = 11/198 (5%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S IEH + LPPHLL+LPL EA+K ELE LFLDKVI NLGLCISVYDI ++ GFI PG+
Sbjct: 4 LSLIEHTLRLPPHLLNLPLDEAIKIELEALFLDKVIANLGLCISVYDIRSIKGGFIYPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIEN- 553
GA TY V FRL++FRPFVGEI+ K+++S +GLRL+LGFF DI++PVHL+P P+R E+
Sbjct: 64 GASTYTVEFRLIVFRPFVGEIIVAKLKESDANGLRLSLGFFDDIYIPVHLLPIPSRFESD 123
Query: 554 ------GIWVWLYG-SEEGVNE---MFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPM 703
G W+W +G +EE +E +D QI+FRV S+ YP IP E ++++PF+PM
Sbjct: 124 PNNRNQGRWIWDFGEAEEAQSEEPRFVIDGMDQIKFRVHSVIYPSIPLEQPENSKPFAPM 183
Query: 704 EITASIFEDGLGPVSWWE 757
IT SI DGLGPVSWWE
Sbjct: 184 VITGSIDYDGLGPVSWWE 201
>ref|XP_010475430.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Camelina sativa] gi|727604745|ref|XP_010475431.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC8-like [Camelina sativa]
Length = 203
Score = 223 bits (569), Expect = 2e-55
Identities = 107/196 (54%), Positives = 145/196 (73%), Gaps = 7/196 (3%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S++EH + +PPHLL+LPL +A+K L+ LFLDKV+ +LGLC+SVYDI VE GF++PG+
Sbjct: 4 LSELEHSLRVPPHLLNLPLEDAIKSVLQNLFLDKVLADLGLCVSVYDIKSVEGGFVLPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIE-- 550
GA TYKV+FR+V+FRPFVGE++ K ++S +GLRLTLGFF DI+VP LIP PNR E
Sbjct: 64 GAATYKVVFRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFEDIYVPAPLIPIPNRCEPD 123
Query: 551 -----NGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITA 715
WVW + ++ + +D + QI+FRV SI YP +P E +DA+PF+PM +T
Sbjct: 124 PYNRKQMRWVWEFDGQDYI----IDDSCQIKFRVQSISYPSVPTERAEDAKPFAPMVVTG 179
Query: 716 SIFEDGLGPVSWWE*F 763
+I +DGLGPVSWWE F
Sbjct: 180 NIDDDGLGPVSWWENF 195
>ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
vinifera] gi|297735498|emb|CBI17938.3| unnamed protein
product [Vitis vinifera]
Length = 192
Score = 223 bits (568), Expect = 2e-55
Identities = 111/193 (57%), Positives = 140/193 (72%), Gaps = 7/193 (3%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S IEH + LPPHLL LPL EA+KGELE LFLDKVI NLGLCISVYDI ++ GF+ PG+
Sbjct: 4 LSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVIANLGLCISVYDIRSIDGGFVFPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIENG 556
GA TY V FRLVMFRPFVGEI+ K+++S +GLRL+LGFF DI++PVHL+P+P E
Sbjct: 64 GASTYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPVHLMPNPCHCEPN 123
Query: 557 -------IWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITA 715
IW+W Y + + +D +IRF+V S+ YPPIP E K+++PF+PM I
Sbjct: 124 PEKKGQVIWIWDYQEQ----KFPIDGIDEIRFQVQSVSYPPIPVEQPKESKPFAPMVIMG 179
Query: 716 SIFEDGLGPVSWW 754
S+ DGLGPVSWW
Sbjct: 180 SLDYDGLGPVSWW 192
>ref|XP_010087136.1| DNA-directed RNA polymerase III subunit rpc8 [Morus notabilis]
gi|587835807|gb|EXB26576.1| DNA-directed RNA polymerase
III subunit rpc8 [Morus notabilis]
Length = 200
Score = 221 bits (564), Expect = 6e-55
Identities = 105/194 (54%), Positives = 142/194 (73%), Gaps = 7/194 (3%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S+IEH + +PP +LS PL EA+K ELE+LFLDKVI NLGLCISVYDI+ +E GFI PG+
Sbjct: 4 LSRIEHTLRVPPDILSRPLTEAIKVELEKLFLDKVIANLGLCISVYDIISIEGGFIFPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIE-- 550
GA TY +F ++MFRPFVGEI+ K+++S +GLRLTLGFF DI++P + +P P+R E
Sbjct: 64 GAATYTAVFTMIMFRPFVGEIISAKVKESDANGLRLTLGFFEDIYIPANFLPDPSRPEPD 123
Query: 551 -----NGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITA 715
W+W +G ++ V +D +IRF+V S+ YPPIP E K+++PF+PM IT
Sbjct: 124 PRKRDRVTWIWEFGEQKYV----IDGEDEIRFQVHSVNYPPIPVEQPKESKPFAPMVITG 179
Query: 716 SIFEDGLGPVSWWE 757
S+ DGLGPVSWW+
Sbjct: 180 SLDCDGLGPVSWWD 193
>ref|XP_003629059.2| DNA-directed RNA polymerase III protein [Medicago truncatula]
gi|657374834|gb|AET03535.2| DNA-directed RNA polymerase
III protein [Medicago truncatula]
Length = 192
Score = 221 bits (564), Expect = 6e-55
Identities = 103/191 (53%), Positives = 138/191 (72%), Gaps = 4/191 (2%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+SKIEHK LPPHLL+ P+ EA++ ELERLFLDKVI LGLCISVYDI +E G I PG
Sbjct: 4 LSKIEHKFALPPHLLARPIREAIQSELERLFLDKVIQKLGLCISVYDITSIEGGSIFPGA 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSP----NR 544
GAPTY+V+F L+MFRPF GEI+ K+ DG+RL+LGFF DI++P H +P P ++
Sbjct: 64 GAPTYQVVFNLIMFRPFPGEIISAKVMSLDADGVRLSLGFFEDIYIPTHHMPYPSYYISK 123
Query: 545 IENGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITASIF 724
W W YG E +E ++++ +IRF+VLS+ YP IP E K+++PF+PM + S++
Sbjct: 124 NNTRKWTWEYGEE--TDEFNIEISNEIRFQVLSVSYPTIPVEQAKESKPFAPMVVNGSLY 181
Query: 725 EDGLGPVSWWE 757
+GLGPVSWW+
Sbjct: 182 HEGLGPVSWWQ 192
>ref|XP_012575494.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Cicer
arietinum]
Length = 196
Score = 221 bits (564), Expect = 6e-55
Identities = 103/194 (53%), Positives = 142/194 (73%), Gaps = 8/194 (4%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S+IEHK+ LPP LLSLP+ +A+ ELE+LFLDKVI NLGLC VYDI+ +E GFI PG+
Sbjct: 4 LSRIEHKLRLPPSLLSLPIRDAIHTELEKLFLDKVIANLGLCTCVYDIISIEGGFIFPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIE-- 550
GAPTY V+F L+MFRP +GEI+ K+ S DGLRL+LGFF DI++P H +P+P+ +
Sbjct: 64 GAPTYTVVFNLIMFRPIMGEIITAKLHSSDADGLRLSLGFFDDIYIPTHHMPNPSHFDPI 123
Query: 551 ------NGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEIT 712
+ +W W Y EEG++ +D + +I+F+V S+ YPPIP E K+++PF+PM +
Sbjct: 124 PGKSNKSVVWFWDYKKEEGLSYP-IDSSDEIKFQVQSVSYPPIPVEQPKESKPFAPMLVY 182
Query: 713 ASIFEDGLGPVSWW 754
S+ +DGLGPVSWW
Sbjct: 183 GSLDQDGLGPVSWW 196
>ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
vinifera] gi|296086693|emb|CBI32328.3| unnamed protein
product [Vitis vinifera]
Length = 192
Score = 220 bits (561), Expect = 1e-54
Identities = 109/193 (56%), Positives = 140/193 (72%), Gaps = 7/193 (3%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S IEH + LPPHLL LPL EA+KGELE LFLDKV+ NLGLCISVYDI ++ GF+ PG+
Sbjct: 4 LSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVFPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIE-- 550
GA TY V FRLVMFRPFVGEI+ K+++S +GL+L+LGFF DI++PVHL+P+P E
Sbjct: 64 GASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHCEPD 123
Query: 551 -----NGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITA 715
IW+W Y + + +D +IRF+V S+ YPPIP E K+++PF+PM I
Sbjct: 124 PENKSQVIWIWDYQEQ----KFPIDGLDEIRFQVQSVSYPPIPVEQPKESKPFAPMMIMG 179
Query: 716 SIFEDGLGPVSWW 754
S+ DGLGPVSWW
Sbjct: 180 SLDYDGLGPVSWW 192
>ref|XP_010038840.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Eucalyptus
grandis] gi|702263817|ref|XP_010038848.1| PREDICTED:
DNA-directed RNA polymerase III subunit RPC8 [Eucalyptus
grandis] gi|629120181|gb|KCW84671.1| hypothetical
protein EUGRSUZ_B01492 [Eucalyptus grandis]
gi|629120182|gb|KCW84672.1| hypothetical protein
EUGRSUZ_B01492 [Eucalyptus grandis]
gi|629120183|gb|KCW84673.1| hypothetical protein
EUGRSUZ_B01492 [Eucalyptus grandis]
Length = 205
Score = 219 bits (559), Expect = 2e-54
Identities = 112/203 (55%), Positives = 144/203 (70%), Gaps = 16/203 (7%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S IEH + LPPHLLSL L +A+K +LE+LFLDKVI NLGLC+SVYDI K++ GFI PG+
Sbjct: 4 LSLIEHTLRLPPHLLSLSLDKAVKHDLEKLFLDKVIANLGLCVSVYDIRKIDGGFIFPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRI--- 547
GAPTY V RL++FRPFVGEI+D K+++ DGLRL++GFF DI++P HL+P P+R
Sbjct: 64 GAPTYTVECRLLVFRPFVGEIIDAKLKEFDKDGLRLSMGFFDDIYIPFHLLPYPSRFEPD 123
Query: 548 -ENG---IWVWLYGSEEGVNE---------MFLDLNQQIRFRVLSIKYPPIPNEPKKDAE 688
ENG W+W Y G NE ++ + IRFRV S+ YP IP E KD++
Sbjct: 124 SENGNRFRWIWEY-QANGENEDDQTSATVYPIDEIGETIRFRVQSVNYPSIPLEQPKDSK 182
Query: 689 PFSPMEITASIFEDGLGPVSWWE 757
PF+PM IT S+ DGLGP+SWWE
Sbjct: 183 PFAPMVITGSLDNDGLGPLSWWE 205
>ref|XP_006479590.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
isoform X1 [Citrus sinensis]
gi|568851835|ref|XP_006479591.1| PREDICTED: DNA-directed
RNA polymerase III subunit RPC8-like isoform X2 [Citrus
sinensis] gi|641849659|gb|KDO68533.1| hypothetical
protein CISIN_1g029495mg [Citrus sinensis]
gi|641849660|gb|KDO68534.1| hypothetical protein
CISIN_1g029495mg [Citrus sinensis]
Length = 192
Score = 219 bits (559), Expect = 2e-54
Identities = 111/193 (57%), Positives = 141/193 (73%), Gaps = 7/193 (3%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+SKIEH + LPPHLL LPL EA+K ELE +FLDKVI NLGLCIS+YDI ++E GF+ PGE
Sbjct: 4 LSKIEHTLRLPPHLLRLPLNEAIKLELENVFLDKVIANLGLCISIYDIKEIEGGFVYPGE 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIE-- 550
GA T+ V FRLV+FRPFVGEI+ K+++S +GLRL+LGFF DI+VP HL+PSP+R E
Sbjct: 64 GASTHTVKFRLVVFRPFVGEIIAAKLKESDANGLRLSLGFFEDIYVPSHLLPSPSRSEPD 123
Query: 551 -----NGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITA 715
W+W +G + V +D +I+FRVLS+ YP IP E + ++PF+PM I
Sbjct: 124 PYGRYEVKWIWEFGDTKYV----IDGLDEIKFRVLSVNYPSIPIEQAEGSKPFAPMVING 179
Query: 716 SIFEDGLGPVSWW 754
SI DGLGPVSWW
Sbjct: 180 SIDYDGLGPVSWW 192
>ref|XP_008365292.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Malus
domestica]
Length = 267
Score = 219 bits (557), Expect = 4e-54
Identities = 106/194 (54%), Positives = 144/194 (74%), Gaps = 7/194 (3%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S+IEH + LPPHLLSL L +A+KGELE++FLDKVI LGLCISV+ I ++DGFI+P +
Sbjct: 65 LSRIEHTLRLPPHLLSLRLEDAVKGELEKIFLDKVIAKLGLCISVHSIQSIKDGFILPND 124
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIE-- 550
G PT++V F L+MFRPFVGEI+ K+++S +GLRL+LGFF DI+VPVHL+PSP+ E
Sbjct: 125 GHPTFRVEFTLIMFRPFVGEIISAKLKESTANGLRLSLGFFDDIYVPVHLLPSPSCSEPD 184
Query: 551 -----NGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITA 715
N IW+W +++ ++ +IRF+V S+ YPPIP E +DA+PF+PM IT
Sbjct: 185 PEKRNNVIWIW---KCPDADDLAVEWTDEIRFQVQSVTYPPIPIEQPEDAKPFAPMVITG 241
Query: 716 SIFEDGLGPVSWWE 757
SI DGLGP+ WW+
Sbjct: 242 SIDYDGLGPLRWWD 255
>ref|NP_172164.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis thaliana]
gi|7523702|gb|AAF63141.1|AC011001_11 hypothetical
protein [Arabidopsis thaliana]
gi|17529108|gb|AAL38764.1| putative RNA polymerase
[Arabidopsis thaliana] gi|23296904|gb|AAN13199.1|
putative RNA polymerase [Arabidopsis thaliana]
gi|332189917|gb|AEE28038.1| RNA polymerase Rpb7
N-terminal domain-containing protein [Arabidopsis
thaliana]
Length = 204
Score = 218 bits (556), Expect = 5e-54
Identities = 104/194 (53%), Positives = 142/194 (73%), Gaps = 7/194 (3%)
Frame = +2
Query: 197 VSKIEHKMILPPHLLSLPLVEALKGELERLFLDKVIPNLGLCISVYDILKVEDGFIVPGE 376
+S++EH + +PPHLL+LPL +A+K L+ +FLDKV+ +LGLC+S+YDI VE GF++PG+
Sbjct: 4 LSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVLPGD 63
Query: 377 GAPTYKVIFRLVMFRPFVGEILDGKIEKSGPDGLRLTLGFFSDIHVPVHLIPSPNRIE-- 550
GA TYKV R+V+FRPFVGE++ K ++S +GLRLTLGFF DI+VP L+P PNR E
Sbjct: 64 GAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRCEPD 123
Query: 551 -----NGIWVWLYGSEEGVNEMFLDLNQQIRFRVLSIKYPPIPNEPKKDAEPFSPMEITA 715
IWVW YG E + +D QI+FRV SI YP +P E +DA+PF+PM +T
Sbjct: 124 PYNRKQMIWVWEYG--EPKEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVTG 181
Query: 716 SIFEDGLGPVSWWE 757
++ +DGLGPVSWW+
Sbjct: 182 NMDDDGLGPVSWWD 195