BLASTX nr result

ID: Cinnamomum24_contig00021636 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00021636
         (352 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010268834.1| PREDICTED: putative F-box protein At1g49610 ...    58   3e-06
ref|XP_010269942.1| PREDICTED: F-box protein At4g22280-like [Nel...    56   9e-06

>ref|XP_010268834.1| PREDICTED: putative F-box protein At1g49610 [Nelumbo nucifera]
          Length = 496

 Score = 57.8 bits (138), Expect = 3e-06
 Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
 Frame = +2

Query: 92  QALCDARVLRLSSDCIQAMPIPTFKDLHF-NFKTKLLILRTGVQKYELPGIANLLWSSPY 268
           + L   +VLR+   CIQ + I   K L   + K KLL+L T + K+ELPGIANLL SSP 
Sbjct: 314 ETLQHVKVLRIGIWCIQVLSIWEMKILPSPSSKRKLLMLDTSLDKWELPGIANLLRSSPD 373

Query: 269 LENLVIDLVPS---NCIYVDKDCELKYDFD 349
           LE LV+++  S   N  + + D    Y+FD
Sbjct: 374 LEALVVNMTASSFINQFHFEADFLDSYNFD 403


>ref|XP_010269942.1| PREDICTED: F-box protein At4g22280-like [Nelumbo nucifera]
           gi|720044611|ref|XP_010269943.1| PREDICTED: F-box
           protein At4g22280-like [Nelumbo nucifera]
           gi|720044614|ref|XP_010269944.1| PREDICTED: F-box
           protein At4g22280-like [Nelumbo nucifera]
           gi|720044617|ref|XP_010269945.1| PREDICTED: F-box
           protein At4g22280-like [Nelumbo nucifera]
          Length = 505

 Score = 56.2 bits (134), Expect = 9e-06
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
 Frame = +2

Query: 122 LSSDCIQAMPIPTFKDLH---FNFKTKLLILRTGVQKYELPGIANLLWSSPYLENLVIDL 292
           L+ DC+    + T++  +        K L L+TG+ K+ELPGI  LL SSP LE LVI++
Sbjct: 314 LTIDCVFIQMLSTWEVQNKDPLRLNVKCLELKTGLTKWELPGILYLLRSSPELETLVINI 373

Query: 293 VPSNCIYVDKDCELKYDFDE 352
             S  I +D + E +YDF E
Sbjct: 374 TSSPNIDIDDEIENQYDFSE 393


Top