BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00020343
         (1560 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010921488.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   459   e-126
ref|XP_012088892.1| PREDICTED: RNA polymerase II-associated prot...   454   e-124
gb|KDP23389.1| hypothetical protein JCGZ_23222 [Jatropha curcas]      454   e-124
ref|XP_012088891.1| PREDICTED: RNA polymerase II-associated prot...   451   e-123
ref|XP_012088890.1| PREDICTED: RNA polymerase II-associated prot...   450   e-123
emb|CBI39598.3| unnamed protein product [Vitis vinifera]              449   e-123
ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot...   449   e-123
ref|XP_008781117.1| PREDICTED: RNA polymerase II-associated prot...   442   e-121
ref|XP_007031158.1| Tetratricopeptide repeat-like superfamily pr...   441   e-121
ref|XP_009373288.1| PREDICTED: RNA polymerase II-associated prot...   439   e-120
ref|XP_009373287.1| PREDICTED: RNA polymerase II-associated prot...   439   e-120
gb|KHG26705.1| RNA polymerase II-associated 3 [Gossypium arboreum]    436   e-119
ref|XP_009416301.1| PREDICTED: RNA polymerase II-associated prot...   435   e-119
ref|XP_008246007.1| PREDICTED: RNA polymerase II-associated prot...   435   e-119
ref|XP_011023785.1| PREDICTED: RNA polymerase II-associated prot...   433   e-118
ref|XP_011023786.1| PREDICTED: RNA polymerase II-associated prot...   432   e-118
ref|XP_007031161.1| Tetratricopeptide repeat (TPR)-like superfam...   432   e-118
ref|XP_007031159.1| Tetratricopeptide repeat (TPR)-like superfam...   432   e-118
ref|XP_012434281.1| PREDICTED: RNA polymerase II-associated prot...   431   e-118
ref|XP_008388472.1| PREDICTED: RNA polymerase II-associated prot...   429   e-117

>ref|XP_010921488.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated protein
            3 [Elaeis guineensis]
          Length = 471

 Score =  459 bits (1182), Expect = e-126
 Identities = 261/475 (54%), Positives = 327/475 (68%), Gaps = 48/475 (10%)
 Frame = -2

Query: 1493 MAGIQSNKHSRDRTLEFQGFLNDLQDWDHYLEKDK--KLKGQAHEEKKYDYFTN------ 1338
            MAG+ S K  +DR+LEFQGFLNDL+ WD YL KDK  K+KGQ+HE  K     N      
Sbjct: 1    MAGV-SRKPDKDRSLEFQGFLNDLEGWD-YLLKDKGHKMKGQSHESNKRGSLRNAGKVNE 58

Query: 1337 -----------------SDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECY 1209
                             SDA+S + S   +EE +PDAASEKELGNEY+KQKK+ +AIECY
Sbjct: 59   DEGPLKKVPAVEVKSKYSDAISHMPSSFYSEEKLPDAASEKELGNEYFKQKKFPEAIECY 118

Query: 1208 SRSIALSPTAVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKL 1029
            SRSIALSPT+VAFANRAMA++K+K+FEEAENDCTEALNLDDRY+KAYSRRATARKELGKL
Sbjct: 119  SRSIALSPTSVAFANRAMAYLKLKRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKL 178

Query: 1028 KASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKA 849
            KASMED++FA RL+PNNQELRKQ++E KAL +KEI  K  G +KN  QGIQ +  S+M  
Sbjct: 179  KASMEDSEFATRLEPNNQELRKQHSETKALYEKEISKKIRGPLKNPFQGIQGVSNSEMGT 238

Query: 848  KGKDQD------------------SQDGHGKIPSKPPNLMKEIEIRTT-TGNRREEQQLD 726
            K    D                  ++DG G    +P   +K+ + ++T  G    E  LD
Sbjct: 239  KNARGDHSVLSNAQNAAAAANGTQTKDGEGTC-DQPLIAVKDTDSKSTDVGKETREYLLD 297

Query: 725  ESLGGATPNSNSS----NVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEV 558
             S  GA  +SN++    +VG  KQ LKAS+++L             K+ITTP++AY+FEV
Sbjct: 298  GSREGAALSSNNAKKDQDVG-CKQVLKASMKDLASRAASRVMATAGKSITTPRTAYEFEV 356

Query: 557  SWRALSDDPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILY 378
            SWRALSDD  LQ +LLKTIPP TLPQ+FKNALS PILIDIIKC  TFF E+TELAV IL 
Sbjct: 357  SWRALSDDCALQMQLLKTIPPPTLPQIFKNALSVPILIDIIKCTTTFFKEDTELAVNILD 416

Query: 377  NLTQVSRFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKYYPGR 213
            NL +V RFDMI++CLS+ D+++L +IW+EVFSS+ + A+  E L++LR +Y  G+
Sbjct: 417  NLAKVPRFDMIVMCLSSTDRSELWQIWEEVFSSKDIAANYIETLSQLRSRYCYGK 471


>ref|XP_012088892.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X3
            [Jatropha curcas]
          Length = 468

 Score =  454 bits (1168), Expect = e-124
 Identities = 252/464 (54%), Positives = 312/464 (67%), Gaps = 43/464 (9%)
 Frame = -2

Query: 1472 KHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK--------------------- 1359
            KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++                      
Sbjct: 7    KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAIDSSRGSSG 66

Query: 1358 KYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTA 1179
            ++DY  N DA+  I S    EE+  DA SEKELGNEY+KQKKYK+AIECYSRSIALSPTA
Sbjct: 67   QHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRSIALSPTA 126

Query: 1178 VAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFA 999
            VA+ANRAMA++KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S+ED++FA
Sbjct: 127  VAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKSLEDSEFA 186

Query: 998  VRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKDQDS--- 828
            +RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+  RS+ K  G + +S   
Sbjct: 187  LRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSETKVNGYEVNSVPS 246

Query: 827  --------------QDGHGKIPSKPPNLMKEIEIRTTTGNRREEQQLDESLGGATPNSNS 690
                           +G  ++P K  + ++E+E +        E Q + S   A P+SN+
Sbjct: 247  ITQRTSVSTSQKGKNEGAVEVPEKSTS-VEEMENKILRVGSSIEGQANYSYTDAMPSSNA 305

Query: 689  SNVGN----RKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDDPVLQ 522
             +       RKQ LKASVQEL            AKNIT P SAYQFEVSWR  S D VLQ
Sbjct: 306  DSFQRYNRMRKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWRGFSGDRVLQ 365

Query: 521  ARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMII 342
             RLLK + P+ LPQ+ KNALSA +LIDIIKC+ATFF+++T LAV  L NL +V RFDM+I
Sbjct: 366  TRLLKAMSPSALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLAKVPRFDMLI 425

Query: 341  LCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKYYPGRW 210
            +CLSAADKADL KIWDEVF  EA P   AE+L  LR KY P +W
Sbjct: 426  MCLSAADKADLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 468


>gb|KDP23389.1| hypothetical protein JCGZ_23222 [Jatropha curcas]
          Length = 469

 Score =  454 bits (1167), Expect = e-124
 Identities = 252/465 (54%), Positives = 312/465 (67%), Gaps = 44/465 (9%)
 Frame = -2

Query: 1472 KHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK--------------------- 1359
            KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++                      
Sbjct: 7    KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAIDSSRGSSG 66

Query: 1358 KYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTA 1179
            ++DY  N DA+  I S    EE+  DA SEKELGNEY+KQKKYK+AIECYSRSIALSPTA
Sbjct: 67   QHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRSIALSPTA 126

Query: 1178 VAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFA 999
            VA+ANRAMA++KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S+ED++FA
Sbjct: 127  VAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKSLEDSEFA 186

Query: 998  VRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKDQDS--- 828
            +RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+  RS+ K  G + +S   
Sbjct: 187  LRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSETKVNGYEVNSVPS 246

Query: 827  ---------------QDGHGKIPSKPPNLMKEIEIRTTTGNRREEQQLDESLGGATPNSN 693
                           + G  ++P K  + ++E+E +        E Q + S   A P+SN
Sbjct: 247  ITQRTSVSTSQKGKNEQGAVEVPEKSTS-VEEMENKILRVGSSIEGQANYSYTDAMPSSN 305

Query: 692  SSNVGN----RKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDDPVL 525
            + +       RKQ LKASVQEL            AKNIT P SAYQFEVSWR  S D VL
Sbjct: 306  ADSFQRYNRMRKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWRGFSGDRVL 365

Query: 524  QARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMI 345
            Q RLLK + P+ LPQ+ KNALSA +LIDIIKC+ATFF+++T LAV  L NL +V RFDM+
Sbjct: 366  QTRLLKAMSPSALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLAKVPRFDML 425

Query: 344  ILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKYYPGRW 210
            I+CLSAADKADL KIWDEVF  EA P   AE+L  LR KY P +W
Sbjct: 426  IMCLSAADKADLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 469


>ref|XP_012088891.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2
            [Jatropha curcas]
          Length = 475

 Score =  451 bits (1159), Expect = e-123
 Identities = 252/471 (53%), Positives = 312/471 (66%), Gaps = 50/471 (10%)
 Frame = -2

Query: 1472 KHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK--------------------- 1359
            KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++                      
Sbjct: 7    KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAIDSSRGSSG 66

Query: 1358 KYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTA 1179
            ++DY  N DA+  I S    EE+  DA SEKELGNEY+KQKKYK+AIECYSRSIALSPTA
Sbjct: 67   QHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRSIALSPTA 126

Query: 1178 VAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFA 999
            VA+ANRAMA++KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S+ED++FA
Sbjct: 127  VAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKSLEDSEFA 186

Query: 998  VRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKDQDS--- 828
            +RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+  RS+ K  G + +S   
Sbjct: 187  LRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSETKVNGYEVNSVPS 246

Query: 827  --------------QDGHGKIPSKPPNLMKEIEIRTTTGNRREEQQLDESLGGATPNSNS 690
                           +G  ++P K  + ++E+E +        E Q + S   A P+SN+
Sbjct: 247  ITQRTSVSTSQKGKNEGAVEVPEKSTS-VEEMENKILRVGSSIEGQANYSYTDAMPSSNA 305

Query: 689  SNV-----------GNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRAL 543
             +              RKQ LKASVQEL            AKNIT P SAYQFEVSWR  
Sbjct: 306  DSFQIKSKLLLRYNRMRKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWRGF 365

Query: 542  SDDPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQV 363
            S D VLQ RLLK + P+ LPQ+ KNALSA +LIDIIKC+ATFF+++T LAV  L NL +V
Sbjct: 366  SGDRVLQTRLLKAMSPSALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLAKV 425

Query: 362  SRFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKYYPGRW 210
             RFDM+I+CLSAADKADL KIWDEVF  EA P   AE+L  LR KY P +W
Sbjct: 426  PRFDMLIMCLSAADKADLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 475


>ref|XP_012088890.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Jatropha curcas]
          Length = 476

 Score =  450 bits (1158), Expect = e-123
 Identities = 252/472 (53%), Positives = 312/472 (66%), Gaps = 51/472 (10%)
 Frame = -2

Query: 1472 KHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK--------------------- 1359
            KH RD+ L+FQGFLNDLQDW+  L +KDKK+K  + ++                      
Sbjct: 7    KHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAIDSSRGSSG 66

Query: 1358 KYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTA 1179
            ++DY  N DA+  I S    EE+  DA SEKELGNEY+KQKKYK+AIECYSRSIALSPTA
Sbjct: 67   QHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRSIALSPTA 126

Query: 1178 VAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFA 999
            VA+ANRAMA++KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELG+ K S+ED++FA
Sbjct: 127  VAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKSLEDSEFA 186

Query: 998  VRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKDQDS--- 828
            +RL+PNNQE++KQY EVK L DKEI  K SG  ++S+QG Q+  RS+ K  G + +S   
Sbjct: 187  LRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSETKVNGYEVNSVPS 246

Query: 827  ---------------QDGHGKIPSKPPNLMKEIEIRTTTGNRREEQQLDESLGGATPNSN 693
                           + G  ++P K  + ++E+E +        E Q + S   A P+SN
Sbjct: 247  ITQRTSVSTSQKGKNEQGAVEVPEKSTS-VEEMENKILRVGSSIEGQANYSYTDAMPSSN 305

Query: 692  SSNV-----------GNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRA 546
            + +              RKQ LKASVQEL            AKNIT P SAYQFEVSWR 
Sbjct: 306  ADSFQIKSKLLLRYNRMRKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWRG 365

Query: 545  LSDDPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQ 366
             S D VLQ RLLK + P+ LPQ+ KNALSA +LIDIIKC+ATFF+++T LAV  L NL +
Sbjct: 366  FSGDRVLQTRLLKAMSPSALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLAK 425

Query: 365  VSRFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKYYPGRW 210
            V RFDM+I+CLSAADKADL KIWDEVF  EA P   AE+L  LR KY P +W
Sbjct: 426  VPRFDMLIMCLSAADKADLAKIWDEVFCGEATPIEHAEILDDLRSKYCP-KW 476


>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
          Length = 1097

 Score =  449 bits (1154), Expect = e-123
 Identities = 244/464 (52%), Positives = 312/464 (67%), Gaps = 47/464 (10%)
 Frame = -2

Query: 1475 NKHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEE--------------------- 1362
            +KH+RD+ L+FQGFL DLQDW+  L EKDKK+K QA E+                     
Sbjct: 630  SKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGV 689

Query: 1361 -----------KKYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIE 1215
                       ++++Y  N DA+S ISS   TEE++PDAASEKELGNEY+KQ+K+K+AI+
Sbjct: 690  SLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAID 749

Query: 1214 CYSRSIALSPTAVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELG 1035
            CYSRSIAL PTAVA+ANRAMA+IKIK+F EAE+DC EALNLDDRYIKAYSRRATARKELG
Sbjct: 750  CYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELG 809

Query: 1034 KLKASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKM 855
            K K + EDA+FA+RL+P NQE++KQY E K+L +KEI  K SGA+K+S+QG+Q++ +S +
Sbjct: 810  KFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVV 869

Query: 854  KAKGKDQ------DSQDGHGK--------IPSKPPNLMKEIEIRTTTGNRREEQQLDESL 717
            +     Q       S  G G+        +P+     M+E E + T    +E   L+ ++
Sbjct: 870  EVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLENAV 929

Query: 716  GGATPNSNSSNVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSD 537
              +      SN    ++++K+S+QEL            AKNIT P SAYQFEVSWR L  
Sbjct: 930  QNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWRGLLG 989

Query: 536  DPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSR 357
            D  LQA  LK I P  LPQ+FKNALSAPILIDIIKCIATFF+ E +LAV  L NLT++SR
Sbjct: 990  DHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNLTKISR 1049

Query: 356  FDMIILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKY 225
            FDMII+CLS+ DK DL KIWDEVF ++A P+  A+ L KLR +Y
Sbjct: 1050 FDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRY 1093


>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Vitis
            vinifera]
          Length = 474

 Score =  449 bits (1154), Expect = e-123
 Identities = 244/464 (52%), Positives = 312/464 (67%), Gaps = 47/464 (10%)
 Frame = -2

Query: 1475 NKHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEE--------------------- 1362
            +KH+RD+ L+FQGFL DLQDW+  L EKDKK+K QA E+                     
Sbjct: 7    SKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGV 66

Query: 1361 -----------KKYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIE 1215
                       ++++Y  N DA+S ISS   TEE++PDAASEKELGNEY+KQ+K+K+AI+
Sbjct: 67   SLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAID 126

Query: 1214 CYSRSIALSPTAVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELG 1035
            CYSRSIAL PTAVA+ANRAMA+IKIK+F EAE+DC EALNLDDRYIKAYSRRATARKELG
Sbjct: 127  CYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELG 186

Query: 1034 KLKASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKM 855
            K K + EDA+FA+RL+P NQE++KQY E K+L +KEI  K SGA+K+S+QG+Q++ +S +
Sbjct: 187  KFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVV 246

Query: 854  KAKGKDQ------DSQDGHGK--------IPSKPPNLMKEIEIRTTTGNRREEQQLDESL 717
            +     Q       S  G G+        +P+     M+E E + T    +E   L+ ++
Sbjct: 247  EVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLENAV 306

Query: 716  GGATPNSNSSNVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSD 537
              +      SN    ++++K+S+QEL            AKNIT P SAYQFEVSWR L  
Sbjct: 307  QNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWRGLLG 366

Query: 536  DPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSR 357
            D  LQA  LK I P  LPQ+FKNALSAPILIDIIKCIATFF+ E +LAV  L NLT++SR
Sbjct: 367  DHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNLTKISR 426

Query: 356  FDMIILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKY 225
            FDMII+CLS+ DK DL KIWDEVF ++A P+  A+ L KLR +Y
Sbjct: 427  FDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRY 470


>ref|XP_008781117.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X2
            [Phoenix dactylifera]
          Length = 420

 Score =  442 bits (1137), Expect = e-121
 Identities = 244/448 (54%), Positives = 307/448 (68%), Gaps = 21/448 (4%)
 Frame = -2

Query: 1493 MAGIQSNKHSRDRTLEFQGFLNDLQDWDHYLEKDK--KLKGQAHEEKKYDYFTNS----- 1335
            MAG+ S K  RDR+LEFQGFLNDL+ WD YL KDK  K+KGQ+HE  K     N+     
Sbjct: 1    MAGV-SGKPDRDRSLEFQGFLNDLEGWD-YLLKDKGGKMKGQSHESNKPGSLRNAGKVNE 58

Query: 1334 --------------DAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSI 1197
                          +A+S + S   +EE +PDAASEKELGNEY+KQKK+ +AIECYSRSI
Sbjct: 59   DKGPLKKVPAVEVKNAMSRMRSSFYSEEKLPDAASEKELGNEYFKQKKFPEAIECYSRSI 118

Query: 1196 ALSPTAVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASM 1017
            ALSPT+VAFANRAMA++K+K+FEEAENDCTEALNLDDRY+KAYSRRATARKELGKLKASM
Sbjct: 119  ALSPTSVAFANRAMAYLKLKRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKASM 178

Query: 1016 EDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKD 837
            ED++FA+RL+PNNQEL+KQYTE KAL +KEI  K SG +K S QGI+ +  S+M  K   
Sbjct: 179  EDSEFAMRLEPNNQELKKQYTETKALYEKEIDKKISGPLKKSFQGIEGVSNSEMGTKNAR 238

Query: 836  QDSQDGHGKIPSKPPNLMKEIEIRTTTGNRREEQQLDESLGGATPNSNSSNVGNRKQQLK 657
             D             +L+              + + D+ +G             RK  LK
Sbjct: 239  GD-------------HLVSSNSQNAAATAHGAQSKKDQDVG-------------RKHVLK 272

Query: 656  ASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDDPVLQARLLKTIPPTTLPQL 477
            AS+Q+L             K+I  P++AY+FEVSWRALSDD  LQ +LLK+IPP  LPQ+
Sbjct: 273  ASMQDLASRAASRVMATAGKSIAAPKTAYEFEVSWRALSDDCALQTQLLKSIPPPALPQI 332

Query: 476  FKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLCKIW 297
            FKNALS PILIDIIKC  TFF E+TELAV IL NL +V RFDM+++CLS+AD+++L +IW
Sbjct: 333  FKNALSVPILIDIIKCTTTFFKEDTELAVNILDNLAKVPRFDMMVMCLSSADRSELQQIW 392

Query: 296  DEVFSSEAVPAHQAEMLAKLRLKYYPGR 213
            +EVFSS+ + A+  E L++LR +Y  G+
Sbjct: 393  EEVFSSKDIAANYIETLSRLRSRYCNGK 420


>ref|XP_007031158.1| Tetratricopeptide repeat-like superfamily protein, putative isoform 1
            [Theobroma cacao] gi|508719763|gb|EOY11660.1|
            Tetratricopeptide repeat-like superfamily protein,
            putative isoform 1 [Theobroma cacao]
          Length = 468

 Score =  441 bits (1135), Expect = e-121
 Identities = 246/465 (52%), Positives = 310/465 (66%), Gaps = 47/465 (10%)
 Frame = -2

Query: 1478 SNKHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEE-------------------- 1362
            ++KHSRD+ L+FQGFLN+LQDW+  L EKDK +K QA ++                    
Sbjct: 2    ASKHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLTNEKGRPTGKSSLIDSS 61

Query: 1361 ----KKYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIA 1194
                ++YDY  N D  + +SS   TEE +PDAASEKELGNEY+KQKK+K+AI+CYSRSI 
Sbjct: 62   TTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIG 121

Query: 1193 LSPTAVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASME 1014
            LSPTAVA ANRAMA++KIKKF+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+E
Sbjct: 122  LSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 181

Query: 1013 DADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKG--- 843
            D +FA+RL+PNNQE++KQ+ E K+L +KEI  K SG ++ S+Q  QE+ +S+ K  G   
Sbjct: 182  DTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSETKENGLGM 241

Query: 842  ------------------KDQDSQDGHGKIPSKPPNLMKEIEIRTT-TGNRREEQQLDES 720
                              + + S+    K P K     + I  R T  G+R++  QLD  
Sbjct: 242  HSASNSTQRTGVATVQGYQTKVSEYDKQKKPEKGSVTSEGIGDRNTLAGSRKDGTQLDSG 301

Query: 719  LGGATPNSNSSNVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALS 540
            + G    S   N   RK +LKASVQEL            AKNI+ P +AYQFEVSWRALS
Sbjct: 302  IVGL--ESIKKNNRTRKPELKASVQELASLAATRAMAEAAKNISPPNTAYQFEVSWRALS 359

Query: 539  DDPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVS 360
             D  LQA LLK   P+ LPQ+FKNALSA +L+DIIKC+ATFF EE +LA+  L NLT+V 
Sbjct: 360  GDRALQAHLLKVTSPSALPQIFKNALSASMLVDIIKCVATFFREEVDLAIKYLENLTKVP 419

Query: 359  RFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKY 225
            RFDM+I+CLS+ +KADL K+WD+VF +EA P   AE+L  LR  Y
Sbjct: 420  RFDMLIMCLSSTEKADLLKVWDDVFCNEATPIEWAEILDNLRSVY 464


>ref|XP_009373288.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Pyrus x
            bretschneideri]
          Length = 411

 Score =  439 bits (1129), Expect = e-120
 Identities = 241/430 (56%), Positives = 301/430 (70%), Gaps = 13/430 (3%)
 Frame = -2

Query: 1475 NKHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKK-----------YDYFTNSD 1332
            NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++K           YDY  N D
Sbjct: 6    NKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEKLTRDSGTSSENYDYSRNFD 65

Query: 1331 AVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRAMA 1152
            A+  ISS L +E+++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR MA
Sbjct: 66   AIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANRGMA 125

Query: 1151 HIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNNQE 972
             IKIK+F+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+NQE
Sbjct: 126  CIKIKRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPHNQE 185

Query: 971  LRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKDQDSQDGHGKIPSKPP 792
            +++QYTE K+L DK    K SGA+KNS+Q        +M+ +GK     +G G  P    
Sbjct: 186  IKRQYTEAKSLYDKSNLQKASGALKNSVQ--------EMQKRGKSDTKVNGKGIQPVSSK 237

Query: 791  NLMKEIEIRTTTGNRREEQQLDESLGGATPNSNSSNVGNRKQQLKASVQELXXXXXXXXX 612
              + EI                     A  + +  +  N+KQ++KASVQEL         
Sbjct: 238  AQITEIT--------------------AVQDHDKGDNTNKKQEVKASVQELASRAASKAK 277

Query: 611  XXXA-KNITTPQSAYQFEVSWRALSDDPVLQARLLKTIPPTTLPQLFKNALSAPILIDII 435
               A KNIT P +AYQFEVSWR LS D  LQA LLK+I P+ LPQ+FKNAL+ PILIDII
Sbjct: 278  VVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSISPSALPQIFKNALTVPILIDII 337

Query: 434  KCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQA 255
            KC+ATFF+EE ELAV  L NLT+V RFD +I+ LS+++KADL KIWDEVF ++A P   A
Sbjct: 338  KCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSNKADLDKIWDEVFYNDATPIEYA 397

Query: 254  EMLAKLRLKY 225
            E L  LR KY
Sbjct: 398  EKLGNLRAKY 407


>ref|XP_009373287.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Pyrus x
            bretschneideri]
          Length = 412

 Score =  439 bits (1128), Expect = e-120
 Identities = 241/431 (55%), Positives = 301/431 (69%), Gaps = 14/431 (3%)
 Frame = -2

Query: 1475 NKHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKK------------YDYFTNS 1335
            NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++K            YDY  N 
Sbjct: 6    NKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEKLKTRDSGTSSENYDYSRNF 65

Query: 1334 DAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRAM 1155
            DA+  ISS L +E+++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR M
Sbjct: 66   DAIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANRGM 125

Query: 1154 AHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNNQ 975
            A IKIK+F+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+NQ
Sbjct: 126  ACIKIKRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPHNQ 185

Query: 974  ELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKDQDSQDGHGKIPSKP 795
            E+++QYTE K+L DK    K SGA+KNS+Q        +M+ +GK     +G G  P   
Sbjct: 186  EIKRQYTEAKSLYDKSNLQKASGALKNSVQ--------EMQKRGKSDTKVNGKGIQPVSS 237

Query: 794  PNLMKEIEIRTTTGNRREEQQLDESLGGATPNSNSSNVGNRKQQLKASVQELXXXXXXXX 615
               + EI                     A  + +  +  N+KQ++KASVQEL        
Sbjct: 238  KAQITEIT--------------------AVQDHDKGDNTNKKQEVKASVQELASRAASKA 277

Query: 614  XXXXA-KNITTPQSAYQFEVSWRALSDDPVLQARLLKTIPPTTLPQLFKNALSAPILIDI 438
                A KNIT P +AYQFEVSWR LS D  LQA LLK+I P+ LPQ+FKNAL+ PILIDI
Sbjct: 278  KVVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSISPSALPQIFKNALTVPILIDI 337

Query: 437  IKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQ 258
            IKC+ATFF+EE ELAV  L NLT+V RFD +I+ LS+++KADL KIWDEVF ++A P   
Sbjct: 338  IKCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSNKADLDKIWDEVFYNDATPIEY 397

Query: 257  AEMLAKLRLKY 225
            AE L  LR KY
Sbjct: 398  AEKLGNLRAKY 408


>gb|KHG26705.1| RNA polymerase II-associated 3 [Gossypium arboreum]
          Length = 472

 Score =  436 bits (1122), Expect = e-119
 Identities = 245/469 (52%), Positives = 311/469 (66%), Gaps = 51/469 (10%)
 Frame = -2

Query: 1478 SNKHSRDRTLEFQGFLNDLQDWDHYLE---KDKKLKGQAH-------------------- 1368
            ++KHSRD+ ++FQGFLNDLQDW+  L+   K+KK+  QA                     
Sbjct: 2    ASKHSRDQAMDFQGFLNDLQDWELSLKDKGKNKKMTSQASGKEQLNITEKGRPTGKRSLN 61

Query: 1367 ------EEKKYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYS 1206
                    ++YDY  N D  S +S+   TEE +PDAASEKELGNEY+KQKK+K+AI+CYS
Sbjct: 62   SSSSTTSSEQYDYLKNYDKWSNLSTSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYS 121

Query: 1205 RSIALSPTAVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLK 1026
            RSIALSPTAVA+ANRAMA++KI+KF+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK
Sbjct: 122  RSIALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 181

Query: 1025 ASMEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERS----- 861
             S+EDA+F +RL+PN+Q+++KQ+ E KAL +KEI  K SG +K S+QG QE+ +S     
Sbjct: 182  ESIEDAEFGLRLEPNSQDMKKQHAEFKALYEKEILQKASGVIKKSMQGAQEVGKSATIDN 241

Query: 860  -----------KMKAKGKDQDSQDGHGKI-----PSKPPNLMKEIEIR-TTTGNRREEQQ 732
                       + K     Q SQ    +I     P K    ++EI  R T+ GN  +  Q
Sbjct: 242  GLGMHTMSDSTQRKGIAAAQGSQTKVSEIDKQKKPEKGSVTLEEIGKRNTSAGNTADGTQ 301

Query: 731  LDESLGGATPNSNSSNVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSW 552
            LD  + G  P +   N   RKQ+LKASVQ+L            AKNI+ P +AYQFEVSW
Sbjct: 302  LDVEIAG--PENIKRNTKTRKQELKASVQDLAFRAASRAMAEAAKNISPPNTAYQFEVSW 359

Query: 551  RALSDDPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNL 372
            RALS D +LQA LLK   P+ LPQ+FKNA+SA +L+DI+KC+ATFF E+ +LA+  L NL
Sbjct: 360  RALSGDRLLQAHLLKVTSPSALPQIFKNAMSASMLVDIVKCVATFFREDVDLAIKYLENL 419

Query: 371  TQVSRFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKY 225
            T+V RFDM+IL LS  DKADL K+WDEVF +EA     AE+L  LR  Y
Sbjct: 420  TKVPRFDMLILFLSPTDKADLLKVWDEVFCNEASAVECAEILDYLRSVY 468


>ref|XP_009416301.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Musa
            acuminata subsp. malaccensis]
          Length = 412

 Score =  435 bits (1119), Expect = e-119
 Identities = 238/431 (55%), Positives = 298/431 (69%), Gaps = 8/431 (1%)
 Frame = -2

Query: 1493 MAGIQSNKHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEKKYDYFTNSDAVSG- 1320
            MAG+ S K  RDR++EF+GFLNDL+DWD  L +KD+KLKG A   KK D   N   + G 
Sbjct: 1    MAGV-SRKPDRDRSMEFKGFLNDLKDWDDLLKDKDEKLKGHARRNKKPDSLQNPGIIDGY 59

Query: 1319 ------ISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRA 1158
                  I S    +EA+PDAASEKELGNEY+KQK++ +AIECYSRSIALSPT+VAFANRA
Sbjct: 60   KEPPRKIYSSNLNDEALPDAASEKELGNEYFKQKRFLEAIECYSRSIALSPTSVAFANRA 119

Query: 1157 MAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNN 978
            MA++K+++FEEAENDCTEALNLDDRY+KAYSRRATARKELGKLKAS+EDADFAVRLDPN 
Sbjct: 120  MAYLKLRRFEEAENDCTEALNLDDRYVKAYSRRATARKELGKLKASLEDADFAVRLDPNT 179

Query: 977  QELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKDQDSQDGHGKIPSK 798
            QELRKQY+E+KAL +KE+  + SGA+K       E  +   +A G   +S          
Sbjct: 180  QELRKQYSEIKALYEKEVANRKSGALK-------EASKESQRADGLQVES---------- 222

Query: 797  PPNLMKEIEIRTTTGNRREEQQLDESLGGATPNSNSSNVGNRKQQLKASVQELXXXXXXX 618
                 K I+      NR               N    +    K +LKAS+ ++       
Sbjct: 223  -----KIIQDDYLISNRVHNAAASSHKSSVVKNERVQH----KHELKASLHDVASRAASR 273

Query: 617  XXXXXAKNITTPQSAYQFEVSWRALSDDPVLQARLLKTIPPTTLPQLFKNALSAPILIDI 438
                 AKNIT+P+SAY+FEVSWRALSDD   QA+LLK IPP TLPQ+FKNALSAPIL+DI
Sbjct: 274  AVASAAKNITSPKSAYEFEVSWRALSDDSA-QAQLLKMIPPYTLPQIFKNALSAPILVDI 332

Query: 437  IKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQ 258
            IKCI TFF E+TELA+++L N+ +V RFDMII+CLSA D +++ ++W+E+FS+  +P   
Sbjct: 333  IKCIGTFFKEDTELAISLLDNMVKVPRFDMIIMCLSAKDHSEVQQVWEEIFSTRYIPVAH 392

Query: 257  AEMLAKLRLKY 225
             E LA+LR KY
Sbjct: 393  TEALARLRPKY 403


>ref|XP_008246007.1| PREDICTED: RNA polymerase II-associated protein 3 [Prunus mume]
          Length = 411

 Score =  435 bits (1119), Expect = e-119
 Identities = 238/434 (54%), Positives = 299/434 (68%), Gaps = 13/434 (2%)
 Frame = -2

Query: 1475 NKHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQ-AHEEK-----------KYDYFTNS 1335
            NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q +H+EK            YDY  N 
Sbjct: 6    NKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQDSHQEKLKTRDLGTSSGNYDYSRNL 65

Query: 1334 DAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRAM 1155
            D+++ +SS  ++E+++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANRAM
Sbjct: 66   DSINTMSSSFTSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANRAM 125

Query: 1154 AHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNNQ 975
            A+IKIK F EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+EDA+FA+RL+P NQ
Sbjct: 126  AYIKIKSFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDAEFALRLEPQNQ 185

Query: 974  ELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKDQDSQDGHGKIPSKP 795
            E++KQYTE K+L +K I  KTSGA KNS+Q +Q++ +   K  G+             +P
Sbjct: 186  EIKKQYTEAKSLYEKTILQKTSGARKNSVQEMQKVGKLDTKVNGQS-----------IQP 234

Query: 794  PNLMKEIEIRTTTGNRREEQQLDESLGGATPNSNSSNVGNRKQQLKASVQELXXXXXXXX 615
             +   +I   T                 A  +    N   RKQ++KASVQEL        
Sbjct: 235  VSSSAQITEMT-----------------AVQDHTKRNNTTRKQEVKASVQELASRAASRV 277

Query: 614  XXXXAKNITTPQSAYQFEVSWRALSDDPVLQARLLKTIPPTTLPQLFKNALSAPILIDII 435
                A+ IT P SAYQFEVSWR L+ D   Q  LLK I P+ LPQ+FKNAL+ PIL+DII
Sbjct: 278  KAVAAEKITPPNSAYQFEVSWRGLAGDNAGQTSLLKAISPSALPQIFKNALTVPILLDII 337

Query: 434  KCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQA 255
            KC+ATFF+EE +LAV  L NLT+V RFD +I+ LS++D ADL KIWDEVF +EA P   A
Sbjct: 338  KCVATFFIEEIDLAVNYLENLTRVPRFDTLIMFLSSSDNADLVKIWDEVFDNEATPIEYA 397

Query: 254  EMLAKLRLKYYPGR 213
            E L  L  KY P R
Sbjct: 398  EKLDNLHTKYCPKR 411


>ref|XP_011023785.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Populus
            euphratica]
          Length = 473

 Score =  433 bits (1113), Expect = e-118
 Identities = 242/467 (51%), Positives = 315/467 (67%), Gaps = 49/467 (10%)
 Frame = -2

Query: 1472 KHSRDRTLEFQGFLNDLQDWDHYLEKDKKLK--GQAHEEK-------------------- 1359
            KH RD+ L+FQGFLNDLQDW+   + DKK+K   QA + K                    
Sbjct: 7    KHGRDQALDFQGFLNDLQDWELLKDTDKKMKKKSQASDMKIGEDERSTGKTSSAVDFSSS 66

Query: 1358 --KYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSP 1185
               YD+  N DA++ +S+  + +E+  DA +EKELGNEY+KQKKYK+AIECYSRSIALSP
Sbjct: 67   SGMYDHSRNFDAINRLSNSFAIDESTVDATTEKELGNEYFKQKKYKEAIECYSRSIALSP 126

Query: 1184 TAVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDAD 1005
            TAVA+ANRAMA++KIK+F EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+ED++
Sbjct: 127  TAVAYANRAMAYLKIKRFPEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 186

Query: 1004 FAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKG------ 843
            FA++L+PNNQE++KQY EVK+L +KEI  K S ++++S+QG ++  RS+    G      
Sbjct: 187  FALKLEPNNQEIKKQYAEVKSLYEKEILQKASESLRSSLQGAKKGGRSETSVNGHAVHPV 246

Query: 842  -------------KDQDSQ-DGHGKIPSKPPNLMKEIEIRTTTGNRREEQQL-DESLGGA 708
                         KD+  + DG G +  K    ++EI+ ++T    R + QL ++S   A
Sbjct: 247  SNVTRRTGASASQKDKAKENDGDGVV--KKSVYVEEIKNKSTGAGSRSDGQLGNDSRANA 304

Query: 707  TPNSNSSNV--GNR--KQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALS 540
             P+SN+  +   NR  +Q+LKASV+EL            AKNIT P SAYQFEVSWR  S
Sbjct: 305  IPSSNAEIIQRNNRAGRQELKASVKELASQAASRAMAEAAKNITPPNSAYQFEVSWRGFS 364

Query: 539  DDPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVS 360
             D  LQA LLK   P+ LPQ+FKNALS  ILIDIIKC+ +FF+ + +LAV  L NLT+V 
Sbjct: 365  GDRALQAHLLKVTTPSALPQIFKNALSVTILIDIIKCVFSFFINDMDLAVKYLENLTKVP 424

Query: 359  RFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKYYP 219
            RFD++I+CL + DKADL K+WDEVF SEA P   AE+L K+R +Y P
Sbjct: 425  RFDILIMCLPSTDKADLLKMWDEVFCSEATPIEYAEILDKMRSRYCP 471


>ref|XP_011023786.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Populus
            euphratica]
          Length = 472

 Score =  432 bits (1112), Expect = e-118
 Identities = 240/466 (51%), Positives = 317/466 (68%), Gaps = 48/466 (10%)
 Frame = -2

Query: 1472 KHSRDRTLEFQGFLNDLQDWDHYLEKDKKLKGQAH------EEKK--------------- 1356
            KH RD+ L+FQGFLNDLQDW+   + DKK+K ++       E+++               
Sbjct: 7    KHGRDQALDFQGFLNDLQDWELLKDTDKKMKKKSQASDMIGEDERSTGKTSSAVDFSSSS 66

Query: 1355 --YDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPT 1182
              YD+  N DA++ +S+  + +E+  DA +EKELGNEY+KQKKYK+AIECYSRSIALSPT
Sbjct: 67   GMYDHSRNFDAINRLSNSFAIDESTVDATTEKELGNEYFKQKKYKEAIECYSRSIALSPT 126

Query: 1181 AVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADF 1002
            AVA+ANRAMA++KIK+F EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+ED++F
Sbjct: 127  AVAYANRAMAYLKIKRFPEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 186

Query: 1001 AVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKG------- 843
            A++L+PNNQE++KQY EVK+L +KEI  K S ++++S+QG ++  RS+    G       
Sbjct: 187  ALKLEPNNQEIKKQYAEVKSLYEKEILQKASESLRSSLQGAKKGGRSETSVNGHAVHPVS 246

Query: 842  ------------KDQDSQ-DGHGKIPSKPPNLMKEIEIRTTTGNRREEQQL-DESLGGAT 705
                        KD+  + DG G +  K    ++EI+ ++T    R + QL ++S   A 
Sbjct: 247  NVTRRTGASASQKDKAKENDGDGVV--KKSVYVEEIKNKSTGAGSRSDGQLGNDSRANAI 304

Query: 704  PNSNSSNV--GNR--KQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSD 537
            P+SN+  +   NR  +Q+LKASV+EL            AKNIT P SAYQFEVSWR  S 
Sbjct: 305  PSSNAEIIQRNNRAGRQELKASVKELASQAASRAMAEAAKNITPPNSAYQFEVSWRGFSG 364

Query: 536  DPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSR 357
            D  LQA LLK   P+ LPQ+FKNALS  ILIDIIKC+ +FF+ + +LAV  L NLT+V R
Sbjct: 365  DRALQAHLLKVTTPSALPQIFKNALSVTILIDIIKCVFSFFINDMDLAVKYLENLTKVPR 424

Query: 356  FDMIILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKYYP 219
            FD++I+CL + DKADL K+WDEVF SEA P   AE+L K+R +Y P
Sbjct: 425  FDILIMCLPSTDKADLLKMWDEVFCSEATPIEYAEILDKMRSRYCP 470


>ref|XP_007031161.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
            isoform 4 [Theobroma cacao] gi|508719766|gb|EOY11663.1|
            Tetratricopeptide repeat (TPR)-like superfamily protein,
            putative isoform 4 [Theobroma cacao]
          Length = 421

 Score =  432 bits (1111), Expect = e-118
 Identities = 236/443 (53%), Positives = 297/443 (67%), Gaps = 25/443 (5%)
 Frame = -2

Query: 1478 SNKHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEE-------------------- 1362
            ++KHSRD+ L+FQGFLN+LQDW+  L EKDK +K QA ++                    
Sbjct: 2    ASKHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLTNEKGRPTGKSSLIDSS 61

Query: 1361 ----KKYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIA 1194
                ++YDY  N D  + +SS   TEE +PDAASEKELGNEY+KQKK+K+AI+CYSRSI 
Sbjct: 62   TTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIG 121

Query: 1193 LSPTAVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASME 1014
            LSPTAVA ANRAMA++KIKKF+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+E
Sbjct: 122  LSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 181

Query: 1013 DADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKDQ 834
            D +FA+RL+PNNQE++KQ+ E K+L +KEI  K SG ++ S+Q  QE+ +S+ K  G   
Sbjct: 182  DTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSETKENGLGM 241

Query: 833  DSQDGHGKIPSKPPNLMKEIEIRTTTGNRREEQQLDESLGGATPNSNSSNVGNRKQQLKA 654
             S            N  +   + T  G + ++                 N   RK +LKA
Sbjct: 242  HSAS----------NSTQRTGVATVQGYQTKK-----------------NNRTRKPELKA 274

Query: 653  SVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDDPVLQARLLKTIPPTTLPQLF 474
            SVQEL            AKNI+ P +AYQFEVSWRALS D  LQA LLK   P+ LPQ+F
Sbjct: 275  SVQELASLAATRAMAEAAKNISPPNTAYQFEVSWRALSGDRALQAHLLKVTSPSALPQIF 334

Query: 473  KNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLCKIWD 294
            KNALSA +L+DIIKC+ATFF EE +LA+  L NLT+V RFDM+I+CLS+ +KADL K+WD
Sbjct: 335  KNALSASMLVDIIKCVATFFREEVDLAIKYLENLTKVPRFDMLIMCLSSTEKADLLKVWD 394

Query: 293  EVFSSEAVPAHQAEMLAKLRLKY 225
            +VF +EA P   AE+L  LR  Y
Sbjct: 395  DVFCNEATPIEWAEILDNLRSVY 417


>ref|XP_007031159.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
            isoform 2 [Theobroma cacao] gi|508719764|gb|EOY11661.1|
            Tetratricopeptide repeat (TPR)-like superfamily protein,
            putative isoform 2 [Theobroma cacao]
          Length = 422

 Score =  432 bits (1110), Expect = e-118
 Identities = 236/444 (53%), Positives = 297/444 (66%), Gaps = 26/444 (5%)
 Frame = -2

Query: 1478 SNKHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEE-------------------- 1362
            ++KHSRD+ L+FQGFLN+LQDW+  L EKDK +K QA ++                    
Sbjct: 2    ASKHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLKTNEKGRPTGKSSLIDS 61

Query: 1361 -----KKYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSI 1197
                 ++YDY  N D  + +SS   TEE +PDAASEKELGNEY+KQKK+K+AI+CYSRSI
Sbjct: 62   STTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSI 121

Query: 1196 ALSPTAVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASM 1017
             LSPTAVA ANRAMA++KIKKF+EAE+DCTEALNLDDRYIKAYSRRATARKELGKLK S+
Sbjct: 122  GLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI 181

Query: 1016 EDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKD 837
            ED +FA+RL+PNNQE++KQ+ E K+L +KEI  K SG ++ S+Q  QE+ +S+ K  G  
Sbjct: 182  EDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVGKSETKENGLG 241

Query: 836  QDSQDGHGKIPSKPPNLMKEIEIRTTTGNRREEQQLDESLGGATPNSNSSNVGNRKQQLK 657
              S            N  +   + T  G + ++                 N   RK +LK
Sbjct: 242  MHSAS----------NSTQRTGVATVQGYQTKK-----------------NNRTRKPELK 274

Query: 656  ASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRALSDDPVLQARLLKTIPPTTLPQL 477
            ASVQEL            AKNI+ P +AYQFEVSWRALS D  LQA LLK   P+ LPQ+
Sbjct: 275  ASVQELASLAATRAMAEAAKNISPPNTAYQFEVSWRALSGDRALQAHLLKVTSPSALPQI 334

Query: 476  FKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLCKIW 297
            FKNALSA +L+DIIKC+ATFF EE +LA+  L NLT+V RFDM+I+CLS+ +KADL K+W
Sbjct: 335  FKNALSASMLVDIIKCVATFFREEVDLAIKYLENLTKVPRFDMLIMCLSSTEKADLLKVW 394

Query: 296  DEVFSSEAVPAHQAEMLAKLRLKY 225
            D+VF +EA P   AE+L  LR  Y
Sbjct: 395  DDVFCNEATPIEWAEILDNLRSVY 418


>ref|XP_012434281.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X1
            [Gossypium raimondii] gi|763778334|gb|KJB45457.1|
            hypothetical protein B456_007G306700 [Gossypium
            raimondii]
          Length = 472

 Score =  431 bits (1108), Expect = e-118
 Identities = 243/467 (52%), Positives = 307/467 (65%), Gaps = 51/467 (10%)
 Frame = -2

Query: 1472 KHSRDRTLEFQGFLNDLQDWDHYLE---KDKKLKGQAH---------------------- 1368
            KHSRD+ ++FQGFLNDLQDW+  L+   K+KK+  QA                       
Sbjct: 4    KHSRDQAMDFQGFLNDLQDWELSLKDKGKNKKMTSQASGKEQLNITEKGRPTGKRSLNNS 63

Query: 1367 ----EEKKYDYFTNSDAVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRS 1200
                  ++YDY  N D  S +S+   TEE +PDAASEKELGNEY+KQKK+K+AI+CYSRS
Sbjct: 64   SSTTSSEQYDYLKNYDKRSNLSTSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRS 123

Query: 1199 IALSPTAVAFANRAMAHIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKAS 1020
            IALSPTAVA+ANRAMA++KI+KF+EAE+DC+EALNLDDRYIKAYSRRATARKELGKLK S
Sbjct: 124  IALSPTAVAYANRAMAYLKIRKFQEAEDDCSEALNLDDRYIKAYSRRATARKELGKLKES 183

Query: 1019 MEDADFAVRLDPNNQELRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGK 840
            +EDA+F +RL+PNNQ+++KQ+ E KAL +KEI  K SG +K S+QG QE+ +S     G 
Sbjct: 184  IEDAEFGLRLEPNNQDMKKQHAEFKALYEKEILQKASGVIKKSMQGAQEVGKSATIDNGL 243

Query: 839  D----QDSQDGHG-----------------KIPSKPPNLMKEIEIR-TTTGNRREEQQLD 726
                  DS    G                 K P K    ++EI  R T+ GN  +  QLD
Sbjct: 244  GMHTMSDSTQRKGIAAVQGSQTKVSECDKQKKPEKGSVTLEEIGKRNTSAGNTADGTQLD 303

Query: 725  ESLGGATPNSNSSNVGNRKQQLKASVQELXXXXXXXXXXXXAKNITTPQSAYQFEVSWRA 546
              + G  P +   +  +RKQ+LKASVQ+L            AK+I+ P +AYQFEVSWRA
Sbjct: 304  AEIAG--PENIKRDTKSRKQELKASVQDLASRAASRAMAEAAKSISPPSTAYQFEVSWRA 361

Query: 545  LSDDPVLQARLLKTIPPTTLPQLFKNALSAPILIDIIKCIATFFMEETELAVTILYNLTQ 366
            LS D  LQA LLK   P+ LPQ+FKNA+SA +L+DI+KC+ATFF E+ +LA+  L NLT+
Sbjct: 362  LSGDRSLQAHLLKVTSPSALPQIFKNAMSASMLVDIVKCVATFFREDVDLAIKYLENLTK 421

Query: 365  VSRFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQAEMLAKLRLKY 225
            V RFDM+IL LS  DKADL K+WDEVF +EA     AE+L  LR  Y
Sbjct: 422  VPRFDMLILFLSPTDKADLLKVWDEVFCNEASAIECAEILDYLRSVY 468


>ref|XP_008388472.1| PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Malus
            domestica]
          Length = 411

 Score =  429 bits (1104), Expect = e-117
 Identities = 240/430 (55%), Positives = 297/430 (69%), Gaps = 13/430 (3%)
 Frame = -2

Query: 1475 NKHSRDRTLEFQGFLNDLQDWDHYL-EKDKKLKGQAHEEK-----------KYDYFTNSD 1332
            NKH RD+ L+FQGFL+DLQDW+  L +KDKK++ Q  +++            YDY  N D
Sbjct: 6    NKHGRDQALDFQGFLSDLQDWELSLKDKDKKMRPQVSQQEXLTRDSGTSSGNYDYSRNFD 65

Query: 1331 AVSGISSGLSTEEAVPDAASEKELGNEYYKQKKYKQAIECYSRSIALSPTAVAFANRAMA 1152
            A+  ISS L +E+++PDAASEKELGNEY+KQKK+K+AI+CYSRSIALSP+AVA+ANR MA
Sbjct: 66   AIKRISSSLRSEDSLPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSPSAVAYANRGMA 125

Query: 1151 HIKIKKFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKASMEDADFAVRLDPNNQE 972
            +IKI++F+EAE+DCT ALNLDDRYIKAYSRRATARKELGKLK S EDA+FA+RL+P+NQE
Sbjct: 126  YIKIRRFQEAEDDCTXALNLDDRYIKAYSRRATARKELGKLKESFEDAEFALRLEPHNQE 185

Query: 971  LRKQYTEVKALCDKEIRGKTSGAVKNSIQGIQELERSKMKAKGKDQDSQDGHGKIPSKPP 792
            ++KQYTE K+L DK    K SGA+KNS+Q  Q+        +GK     +G G  P    
Sbjct: 186  IKKQYTEAKSLYDKSNLEKASGALKNSVQEXQK--------RGKLDTKVNGKGIQPVSXS 237

Query: 791  NLMKEIEIRTTTGNRREEQQLDESLGGATPNSNSSNVGNRKQQLKASVQELXXXXXXXXX 612
              + EI               D + G  T         N+K ++KASVQEL         
Sbjct: 238  AQITEITXVQ-----------DHTKGDNT---------NKKLEVKASVQELASRAASKAK 277

Query: 611  XXXA-KNITTPQSAYQFEVSWRALSDDPVLQARLLKTIPPTTLPQLFKNALSAPILIDII 435
               A KNIT P +AYQFEVSWR LS D  LQA LLK+I P+ LPQ+FKNAL+ PILIDII
Sbjct: 278  VVAAEKNITPPTTAYQFEVSWRDLSGDSALQASLLKSISPSALPQIFKNALTVPILIDII 337

Query: 434  KCIATFFMEETELAVTILYNLTQVSRFDMIILCLSAADKADLCKIWDEVFSSEAVPAHQA 255
             C+ATFF+EE ELAV  L NLT+V RFD +I+ LS+++KADL KIWDEVF +EA P   A
Sbjct: 338  NCVATFFVEEMELAVNYLENLTKVPRFDTLIIFLSSSNKADLDKIWDEVFYNEATPIEYA 397

Query: 254  EMLAKLRLKY 225
            E L  LR KY
Sbjct: 398  EKLGNLRAKY 407