BLASTX nr result
ID: Cinnamomum24_contig00018964
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum24_contig00018964
(323 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_009172091.1| RNA polymerase alpha subunit (chloroplast) [... 142 1e-31
ref|YP_009172011.1| RNA polymerase alpha subunit (chloroplast) [... 142 1e-31
gb|AKU71006.1| RNA polymerase alpha subunit (chloroplast) [Cinna... 142 1e-31
ref|NP_862785.1| RNA polymerase alpha subunit [Calycanthus flori... 131 2e-28
ref|YP_009048319.1| DNA-directed RNA polymerase alpha chain (chl... 131 2e-28
ref|YP_007474568.1| RNA polymerase alpha subunit (chloroplast) [... 131 2e-28
ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [... 131 2e-28
ref|YP_006576146.1| RpoA (chloroplast) [Magnolia denudata] gi|34... 131 2e-28
ref|YP_740234.1| RNA polymerase alpha subunit [Liriodendron tuli... 131 2e-28
ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]... 130 3e-28
ref|YP_784418.1| RNA polymerase alpha subunit [Drimys granadensi... 129 6e-28
ref|YP_009141895.1| DNA-directed RNA polymerase alpha chain (chl... 129 8e-28
gb|AHH24305.1| RNA polymerase subunit A (chloroplast) [Japonolir... 129 1e-27
gb|AEX94397.1| RNA polymerase alpha subunit (chloroplast) [Ledeb... 129 1e-27
gb|AEX94390.1| RNA polymerase alpha subunit (chloroplast) [Aloe ... 129 1e-27
ref|YP_004769746.1| RNA polymerase alpha subunit [Magnolia kwang... 129 1e-27
gb|AEZ49455.1| RNA polymerase alpha subunit, partial (plastid) [... 128 1e-27
gb|AEX94394.1| RNA polymerase alpha subunit (chloroplast) [Dorya... 128 1e-27
gb|AEZ49441.1| RNA polymerase alpha subunit (plastid) [Molineria... 128 2e-27
ref|YP_009093981.1| RNA polymerase alpha subunit (chloroplast) [... 127 2e-27
>ref|YP_009172091.1| RNA polymerase alpha subunit (chloroplast) [Machilus balansae]
gi|929982435|gb|ALF35796.1| RNA polymerase alpha subunit
(chloroplast) [Machilus balansae]
Length = 339
Score = 142 bits (357), Expect = 1e-31
Identities = 69/69 (100%), Positives = 69/69 (100%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF
Sbjct: 271 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 330
Query: 181 AIYLPKNKF 207
AIYLPKNKF
Sbjct: 331 AIYLPKNKF 339
>ref|YP_009172011.1| RNA polymerase alpha subunit (chloroplast) [Machilus yunnanensis]
gi|929982354|gb|ALF35716.1| RNA polymerase alpha subunit
(chloroplast) [Machilus yunnanensis]
Length = 339
Score = 142 bits (357), Expect = 1e-31
Identities = 69/69 (100%), Positives = 69/69 (100%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF
Sbjct: 271 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 330
Query: 181 AIYLPKNKF 207
AIYLPKNKF
Sbjct: 331 AIYLPKNKF 339
>gb|AKU71006.1| RNA polymerase alpha subunit (chloroplast) [Cinnamomum micranthum
f. kanehirae]
Length = 339
Score = 142 bits (357), Expect = 1e-31
Identities = 69/69 (100%), Positives = 69/69 (100%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF
Sbjct: 271 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 330
Query: 181 AIYLPKNKF 207
AIYLPKNKF
Sbjct: 331 AIYLPKNKF 339
>ref|NP_862785.1| RNA polymerase alpha subunit [Calycanthus floridus var. glaucus]
gi|41688654|sp|Q7YJU6.1|RPOA_CALFG RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Calycanthus floridus var. glaucus]
gi|32399410|emb|CAD28752.1| RNA polymerase alpha subunit
[Calycanthus floridus var. glaucus]
Length = 340
Score = 131 bits (329), Expect = 2e-28
Identities = 63/68 (92%), Positives = 65/68 (95%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELP+RTYNCLKRSNIHTLLDLLNNSQEDLMRIEH RIED+KQILDILQKHF
Sbjct: 271 LKCIFIDQSELPTRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHFRIEDIKQILDILQKHF 330
Query: 181 AIYLPKNK 204
I LPKNK
Sbjct: 331 GIDLPKNK 338
>ref|YP_009048319.1| DNA-directed RNA polymerase alpha chain (chloroplast) [Magnolia
yunnanensis] gi|573015534|gb|AHF72112.1| DNA-directed
RNA polymerase alpha chain (chloroplast) [Magnolia
yunnanensis]
Length = 337
Score = 131 bits (329), Expect = 2e-28
Identities = 64/69 (92%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELP RTYNCLKRSNIHTLLDLL+NSQEDLMRIEH RIEDVKQILDILQKHF
Sbjct: 269 LKCIFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIEDVKQILDILQKHF 328
Query: 181 AIYLPKNKF 207
I LPKNKF
Sbjct: 329 TIDLPKNKF 337
>ref|YP_007474568.1| RNA polymerase alpha subunit (chloroplast) [Magnolia grandiflora]
gi|372862875|gb|AEX98951.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia grandiflora]
gi|372863045|gb|AEX99119.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia grandiflora]
Length = 337
Score = 131 bits (329), Expect = 2e-28
Identities = 64/69 (92%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELP RTYNCLKRSNIHTLLDLL+NSQEDLMRIEH RIEDVKQILDILQKHF
Sbjct: 269 LKCIFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIEDVKQILDILQKHF 328
Query: 181 AIYLPKNKF 207
I LPKNKF
Sbjct: 329 TIDLPKNKF 337
>ref|YP_007474402.1| RNA polymerase alpha subunit (chloroplast) [Magnolia officinalis]
gi|452848803|ref|YP_007474484.1| RNA polymerase alpha
subunit (chloroplast) [Magnolia officinalis subsp.
biloba] gi|619275767|ref|YP_009026913.1| RNA polymerase
alpha subunit (plastid) [Magnolia tripetala]
gi|372862453|gb|AEX98534.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis]
gi|372862536|gb|AEX98616.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|372862621|gb|AEX98700.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|372862706|gb|AEX98784.1| RNA polymerase alpha subunit
(chloroplast) [Magnolia officinalis subsp. biloba]
gi|608608435|gb|AHW51989.1| RNA polymerase alpha subunit
(plastid) [Magnolia tripetala]
Length = 337
Score = 131 bits (329), Expect = 2e-28
Identities = 64/69 (92%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELP RTYNCLKRSNIHTLLDLL+NSQEDLMRIEH RIEDVKQILDILQKHF
Sbjct: 269 LKCIFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIEDVKQILDILQKHF 328
Query: 181 AIYLPKNKF 207
I LPKNKF
Sbjct: 329 TIDLPKNKF 337
>ref|YP_006576146.1| RpoA (chloroplast) [Magnolia denudata] gi|343887570|gb|AEM65249.1|
RpoA [Magnolia denudata] gi|372862283|gb|AEX98366.1| RNA
polymerase alpha subunit (chloroplast) [Magnolia
denudata]
Length = 337
Score = 131 bits (329), Expect = 2e-28
Identities = 64/69 (92%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELP RTYNCLKRSNIHTLLDLL+NSQEDLMRIEH RIEDVKQILDILQKHF
Sbjct: 269 LKCIFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIEDVKQILDILQKHF 328
Query: 181 AIYLPKNKF 207
I LPKNKF
Sbjct: 329 TIDLPKNKF 337
>ref|YP_740234.1| RNA polymerase alpha subunit [Liriodendron tulipifera]
gi|122239940|sp|Q0G9I7.1|RPOA_LIRTU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|113201026|gb|ABI32541.1| RNA polymerase alpha subunit
[Liriodendron tulipifera]
Length = 337
Score = 131 bits (329), Expect = 2e-28
Identities = 64/69 (92%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELP RTYNCLKRSNIHTLLDLL+NSQEDLMRIEH RIEDVKQILDILQKHF
Sbjct: 269 LKCIFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIEDVKQILDILQKHF 328
Query: 181 AIYLPKNKF 207
I LPKNKF
Sbjct: 329 TIDLPKNKF 337
>ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]
gi|224474167|gb|ACN49356.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo lutea]
gi|383286921|gb|AFH01570.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo lutea]
Length = 339
Score = 130 bits (328), Expect = 3e-28
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELP RTYNCLKRSNIHTLLDLLNNSQEDLM++EH +IEDVKQILDILQKHF
Sbjct: 271 LKCIFIDQSELPPRTYNCLKRSNIHTLLDLLNNSQEDLMKMEHFQIEDVKQILDILQKHF 330
Query: 181 AIYLPKNKF 207
AI LPKNKF
Sbjct: 331 AIDLPKNKF 339
>ref|YP_784418.1| RNA polymerase alpha subunit [Drimys granadensis]
gi|122164409|sp|Q06GW5.1|RPOA_DRIGR RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
(chloroplast) [Drimys granadensis]
gi|112032693|gb|ABH88328.1| RNA polymerase alpha subunit
(chloroplast) [Drimys granadensis]
Length = 339
Score = 129 bits (325), Expect = 6e-28
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
L+CIFIDQSELP RTYNCLKRSNIHTLLDLL+NSQEDLMRIEHLRIEDVK+ILDILQKHF
Sbjct: 271 LECIFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHLRIEDVKRILDILQKHF 330
Query: 181 AIYLPKNKF 207
I LPKNKF
Sbjct: 331 TIDLPKNKF 339
>ref|YP_009141895.1| DNA-directed RNA polymerase alpha chain (chloroplast) [Xerophyllum
tenax] gi|705244254|gb|AIW56449.1| DNA-directed RNA
polymerase alpha chain (chloroplast) [Xerophyllum tenax]
Length = 339
Score = 129 bits (324), Expect = 8e-28
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
L+CIFIDQSELPSRTYNCLKRSNIHTLLDLL+NSQEDLMRIE+ RIEDVKQILD LQKHF
Sbjct: 269 LQCIFIDQSELPSRTYNCLKRSNIHTLLDLLSNSQEDLMRIEYFRIEDVKQILDTLQKHF 328
Query: 181 AIYLPKNKF 207
AI LPKNKF
Sbjct: 329 AIALPKNKF 337
>gb|AHH24305.1| RNA polymerase subunit A (chloroplast) [Japonolirion osense]
Length = 339
Score = 129 bits (323), Expect = 1e-27
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELPSRTYNCLKRSNIHTLLDLL+NSQEDLMRIE+ RIEDVKQILD L+KHF
Sbjct: 269 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLSNSQEDLMRIEYFRIEDVKQILDTLRKHF 328
Query: 181 AIYLPKNKF 207
AI LPKNKF
Sbjct: 329 AIDLPKNKF 337
>gb|AEX94397.1| RNA polymerase alpha subunit (chloroplast) [Ledebouria cordifolia]
Length = 339
Score = 129 bits (323), Expect = 1e-27
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELPSRTYNCLKRSNIHTLLDLL+NSQEDLMRIE+ R EDVKQILD LQKHF
Sbjct: 269 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLSNSQEDLMRIEYFRTEDVKQILDTLQKHF 328
Query: 181 AIYLPKNKF 207
AI LPKNKF
Sbjct: 329 AINLPKNKF 337
>gb|AEX94390.1| RNA polymerase alpha subunit (chloroplast) [Aloe vera]
Length = 339
Score = 129 bits (323), Expect = 1e-27
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLN SQEDLMRIE+ RIEDVKQILD L+KHF
Sbjct: 269 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNKSQEDLMRIEYFRIEDVKQILDTLRKHF 328
Query: 181 AIYLPKNKF 207
AI LPKNKF
Sbjct: 329 AINLPKNKF 337
>ref|YP_004769746.1| RNA polymerase alpha subunit [Magnolia kwangsiensis]
gi|302424212|gb|ADL39088.1| RNA polymerase alpha subunit
[Magnolia kwangsiensis]
Length = 337
Score = 129 bits (323), Expect = 1e-27
Identities = 63/68 (92%), Positives = 64/68 (94%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELP RTYNCLKRSNIHTLLDLL+NSQEDLMRIEH RIEDVKQILDILQKHF
Sbjct: 269 LKCIFIDQSELPPRTYNCLKRSNIHTLLDLLSNSQEDLMRIEHFRIEDVKQILDILQKHF 328
Query: 181 AIYLPKNK 204
I LPKNK
Sbjct: 329 TIDLPKNK 336
>gb|AEZ49455.1| RNA polymerase alpha subunit, partial (plastid) [Neoastelia
spectabilis]
Length = 337
Score = 128 bits (322), Expect = 1e-27
Identities = 62/68 (91%), Positives = 65/68 (95%)
Frame = +1
Query: 4 KCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHFA 183
KCIFIDQSELPSRTYNCLKRSNIHTLLDLL+NSQEDLMRIE+ RIEDVKQILD LQKH A
Sbjct: 270 KCIFIDQSELPSRTYNCLKRSNIHTLLDLLSNSQEDLMRIEYFRIEDVKQILDTLQKHLA 329
Query: 184 IYLPKNKF 207
I+LPKNKF
Sbjct: 330 IHLPKNKF 337
>gb|AEX94394.1| RNA polymerase alpha subunit (chloroplast) [Doryanthes palmeri]
Length = 336
Score = 128 bits (322), Expect = 1e-27
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELP RTYNCLKRSNIHTLLDLL+NSQEDLMRIE+ RIEDVKQILD LQKHF
Sbjct: 266 LKCIFIDQSELPYRTYNCLKRSNIHTLLDLLSNSQEDLMRIEYFRIEDVKQILDTLQKHF 325
Query: 181 AIYLPKNKF 207
AI LPKNKF
Sbjct: 326 AINLPKNKF 334
>gb|AEZ49441.1| RNA polymerase alpha subunit (plastid) [Molineria capitulata]
Length = 350
Score = 128 bits (321), Expect = 2e-27
Identities = 66/80 (82%), Positives = 72/80 (90%), Gaps = 2/80 (2%)
Frame = +1
Query: 4 KCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHFA 183
K IFIDQSELPSRTYNCLK+S+IHTLLDLL+NSQEDLMRIE+LRIEDVKQILD LQKHFA
Sbjct: 270 KYIFIDQSELPSRTYNCLKKSSIHTLLDLLSNSQEDLMRIEYLRIEDVKQILDTLQKHFA 329
Query: 184 IYLPKNK--F*IHWYYFIFF 237
I+LPKN+ F I YFIFF
Sbjct: 330 IHLPKNRFSFSISCNYFIFF 349
>ref|YP_009093981.1| RNA polymerase alpha subunit (chloroplast) [Nelumbo nucifera]
gi|224474255|gb|ACN49441.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|290489668|gb|ADD31218.1| RNA polymerase alpha subunit
protein (chloroplast) [Nelumbo nucifera]
gi|383286829|gb|AFH01479.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|519666943|gb|AGO98555.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
gi|725824076|gb|AIY33855.1| RNA polymerase alpha subunit
(chloroplast) [Nelumbo nucifera]
Length = 339
Score = 127 bits (320), Expect = 2e-27
Identities = 62/69 (89%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LKCIFIDQSELPSRTYNCLKRSNIHTLLDLLNNSQEDLMRIEHLRIEDVKQILDILQKHF 180
LKCIFIDQSELP RTYNCLKRSNIHTLLDLLNNSQEDLM++ H +IEDVKQILDILQKHF
Sbjct: 271 LKCIFIDQSELPPRTYNCLKRSNIHTLLDLLNNSQEDLMKMFHFQIEDVKQILDILQKHF 330
Query: 181 AIYLPKNKF 207
AI LPKNKF
Sbjct: 331 AIDLPKNKF 339