BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00017456
         (2316 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-...   535   e-149
ref|XP_011623893.1| PREDICTED: RNA polymerase sigma factor sigB ...   533   e-148
gb|ERM94758.1| hypothetical protein AMTR_s00011p00258380 [Ambore...   533   e-148
ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-...   531   e-147
ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-...   524   e-145
ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB ...   518   e-144
ref|XP_010943391.1| PREDICTED: RNA polymerase sigma factor sigB-...   517   e-143
ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB ...   517   e-143
ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB ...   516   e-143
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac...   516   e-143
ref|XP_009377636.1| PREDICTED: RNA polymerase sigma factor sigB ...   515   e-143
ref|XP_010918654.1| PREDICTED: RNA polymerase sigma factor sigB-...   514   e-143
ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB ...   514   e-143
gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   514   e-142
ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB ...   507   e-140
ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB ...   507   e-140
ref|XP_009398609.1| PREDICTED: RNA polymerase sigma factor sigB-...   504   e-140
ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus nota...   504   e-139
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB ...   504   e-139
ref|XP_008392513.1| PREDICTED: RNA polymerase sigma factor sigB ...   503   e-139

>ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
            nucifera]
          Length = 584

 Score =  535 bits (1377), Expect = e-149
 Identities = 302/570 (52%), Positives = 367/570 (64%), Gaps = 39/570 (6%)
 Frame = -3

Query: 1801 SLCIHHRAINL-HKRHWHC----------------------VSSLATTFIDVEKLRIPSL 1691
            ++ IH R   L H +H HC                       +++ TT +DVEKLR+PSL
Sbjct: 14   TISIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVLSTTTTAMTTTLVDVEKLRMPSL 73

Query: 1690 EDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGKEALIPVXXXXXXXXXXXXXX 1511
            E HS S A+   L+Y G+ G   + SF ATLA E+ +TG EALI                
Sbjct: 74   ESHSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALIAAAAAEAVALAKEAVE 133

Query: 1510 XXXXXA-MISLGDTFVKLDDADDFPSEGDILLLERARPIEVQP--------------EEE 1376
                 A M++   +    +   DF SE  I  LE+A+  E Q               EEE
Sbjct: 134  VAKDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTETQEVGRIDHSVGLESRQEEE 193

Query: 1375 NISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXXXXXXXXXXAXXXXXXXX 1196
                 S KD++     + E +LLQ+QL KSIA RSG               A        
Sbjct: 194  QSVQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQARRARAMEKASTNVLSVK 253

Query: 1195 XXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSEGIQGXXXXXXXXXXXX 1016
                   +  + Q++DYSDPL Y             TEE+ELSEGIQ             
Sbjct: 254  SGHSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLHEELA 313

Query: 1015 EH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRLVISIAKNYQGVGMNLE 839
            E  GGQPT AQWA+ AG+D+KTLR+RLNYGI CK++MIKSNIRLVISIAKNYQG GMNL+
Sbjct: 314  ERCGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQ 373

Query: 838  DLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQSRTIRLPNHIADAAYR 659
            DLVQEGCRGLVKG EKFDASKGFKFSTYAHWWIKQ++RKSLS+QSRTIRLP H+ +A YR
Sbjct: 374  DLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR 433

Query: 658  VKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRSFDQKTGIDQTLKPSEV 479
            V+EA+KQLYS+NGRHPDN+E+A+ATGLS+KRL  +LLTPKAP S DQK G++Q +KPSE+
Sbjct: 434  VREAKKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPISLDQKIGMNQDMKPSEI 493

Query: 478  TADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLDDGRMKTLQEIGESMGV 299
             ADP+AET E++L KQ MK+DLEKVLDSLN REKQVIR RFG++DGRMKTLQEIGE MGV
Sbjct: 494  IADPDAETAEELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGV 553

Query: 298  TRERIRQIESCAFRKLKNKKRIENLKQYLI 209
            +RERIRQIESCAFRKLKNK+R +NL+QY+I
Sbjct: 554  SRERIRQIESCAFRKLKNKRRTKNLQQYVI 583


>ref|XP_011623893.1| PREDICTED: RNA polymerase sigma factor sigB [Amborella trichopoda]
          Length = 563

 Score =  533 bits (1372), Expect = e-148
 Identities = 291/532 (54%), Positives = 358/532 (67%), Gaps = 17/532 (3%)
 Frame = -3

Query: 1750 CVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGK 1571
            CVSS AT  +DV+K+R+PSL  HSTS +T G LTY G+IG   +T F A L TE+ L  +
Sbjct: 31   CVSSTATVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGTIGSQKKTDFEAALVTESLLKSE 90

Query: 1570 EALIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILLLERARPIEV 1391
            EA+I                     A++       + D  DDFPSE DIL L+RAR  E+
Sbjct: 91   EAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSDKVDDFPSEADILRLQRARLTEM 150

Query: 1390 Q----------------PEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXX 1259
            +                 + ++++  S  +  +   RE+ +E LQ+Q S+ +A RS    
Sbjct: 151  ERIGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQSRENILEALQLQHSQRVAVRSRRQT 210

Query: 1258 XXXXXXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEE 1079
                        A               K    QE+DYSDPL Y             TEE
Sbjct: 211  ERRARRAKGVEKAAANAITVKLGTTSRRKRAPLQEIDYSDPLRYLRGTTNSTKLLTATEE 270

Query: 1078 IELSEGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIK 902
            +ELSEGIQ             E  GG+PT  QWA+ AG+D+K LR RL+YG HCK++MIK
Sbjct: 271  LELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAGIDQKALRRRLSYGTHCKDKMIK 330

Query: 901  SNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRK 722
            SNIRLVISIAKNYQGVG++++DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RK
Sbjct: 331  SNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 390

Query: 721  SLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTP 542
            SLS+QSRTIRLP H+ DA YRV+EA KQLYS+NGRHP+++E+A+ATGLS+KRL T+LLTP
Sbjct: 391  SLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPNDEEVAEATGLSMKRLTTVLLTP 450

Query: 541  KAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRS 362
            KAPRS DQK GI+Q LKPSEV +DPEAET ED+L KQ MK+DLEKVL++LN REKQV+R 
Sbjct: 451  KAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMKQFMKQDLEKVLNTLNPREKQVVRW 510

Query: 361  RFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            RFGL+DGRMKTLQEIGE MGV+RERIRQIES AFRKLKNKKR +NL+QYL+S
Sbjct: 511  RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKNLRQYLLS 562


>gb|ERM94758.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
          Length = 570

 Score =  533 bits (1372), Expect = e-148
 Identities = 291/532 (54%), Positives = 358/532 (67%), Gaps = 17/532 (3%)
 Frame = -3

Query: 1750 CVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGK 1571
            CVSS AT  +DV+K+R+PSL  HSTS +T G LTY G+IG   +T F A L TE+ L  +
Sbjct: 38   CVSSTATVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGTIGSQKKTDFEAALVTESLLKSE 97

Query: 1570 EALIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILLLERARPIEV 1391
            EA+I                     A++       + D  DDFPSE DIL L+RAR  E+
Sbjct: 98   EAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSDKVDDFPSEADILRLQRARLTEM 157

Query: 1390 Q----------------PEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXX 1259
            +                 + ++++  S  +  +   RE+ +E LQ+Q S+ +A RS    
Sbjct: 158  ERIGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQSRENILEALQLQHSQRVAVRSRRQT 217

Query: 1258 XXXXXXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEE 1079
                        A               K    QE+DYSDPL Y             TEE
Sbjct: 218  ERRARRAKGVEKAAANAITVKLGTTSRRKRAPLQEIDYSDPLRYLRGTTNSTKLLTATEE 277

Query: 1078 IELSEGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIK 902
            +ELSEGIQ             E  GG+PT  QWA+ AG+D+K LR RL+YG HCK++MIK
Sbjct: 278  LELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAGIDQKALRRRLSYGTHCKDKMIK 337

Query: 901  SNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRK 722
            SNIRLVISIAKNYQGVG++++DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RK
Sbjct: 338  SNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 397

Query: 721  SLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTP 542
            SLS+QSRTIRLP H+ DA YRV+EA KQLYS+NGRHP+++E+A+ATGLS+KRL T+LLTP
Sbjct: 398  SLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPNDEEVAEATGLSMKRLTTVLLTP 457

Query: 541  KAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRS 362
            KAPRS DQK GI+Q LKPSEV +DPEAET ED+L KQ MK+DLEKVL++LN REKQV+R 
Sbjct: 458  KAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMKQFMKQDLEKVLNTLNPREKQVVRW 517

Query: 361  RFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            RFGL+DGRMKTLQEIGE MGV+RERIRQIES AFRKLKNKKR +NL+QYL+S
Sbjct: 518  RFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKNLRQYLLS 569


>ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nelumbo nucifera]
          Length = 572

 Score =  531 bits (1367), Expect = e-147
 Identities = 298/522 (57%), Positives = 355/522 (68%), Gaps = 9/522 (1%)
 Frame = -3

Query: 1744 SSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGKEA 1565
            +++ TT +D EKLR+PSLE H  S      LTY G+I    +  F ATLATE  +TG EA
Sbjct: 53   ATMTTTVVDDEKLRMPSLEAHLISVPADRPLTYIGAIDPPTKAKFEATLATEPLITGDEA 112

Query: 1564 LIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDD-ADDFPSEGDILLLERARPIEVQ 1388
            LI                     A++   +   K D    D PSE D    E A+  E+ 
Sbjct: 113  LIAAAAVEAVALAKAAVEIAKDAALMVSTNPSSKSDKWPPDIPSELDTYWHETAQLNEI- 171

Query: 1387 PEEENISHHST-------KDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXXXXXXXX 1229
             E+ ++ HHS        +D++     + E++LLQ+QLSKSIA RSG             
Sbjct: 172  -EQVDMVHHSLGAESRPKEDSDYLDPTDEELKLLQMQLSKSIAVRSGRQTERRARRARAA 230

Query: 1228 XXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSEGIQGX 1049
                              K  + Q+VDYSDPL Y             TEE+E SEGIQ  
Sbjct: 231  EKVAANVVAVKSGSSSRKKRSALQDVDYSDPLRYLRGTTSTSRLLTATEELEFSEGIQDL 290

Query: 1048 XXXXXXXXXXXE-HGGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRLVISIA 872
                       E +GGQPT AQWA+ AG+D+KTLR+RLNYGI CK++MIKSNIRLVISIA
Sbjct: 291  LKLEKLYEELAERYGGQPTFAQWAAAAGIDQKTLRKRLNYGILCKDKMIKSNIRLVISIA 350

Query: 871  KNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQSRTIR 692
            KNYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+QSRTIR
Sbjct: 351  KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 410

Query: 691  LPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRSFDQKT 512
            LP H+ +A YRV+EARKQLYS+NGRHPDN+E+A+ATGLS+KRL  +LLTPKAPRS DQK 
Sbjct: 411  LPFHMVEATYRVREARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKI 470

Query: 511  GIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLDDGRMK 332
            GI+Q LKPSEV ADP+AET E++L K+ MK+DLEKVLDSLN REKQVIR RFGL+DGRMK
Sbjct: 471  GINQNLKPSEVIADPDAETTEELLMKKFMKQDLEKVLDSLNPREKQVIRWRFGLEDGRMK 530

Query: 331  TLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            TLQEIGE MGV+RERIRQIESCAFRKLKNKKR +NL+QYLIS
Sbjct: 531  TLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKNLQQYLIS 572


>ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-like [Phoenix
            dactylifera]
          Length = 566

 Score =  524 bits (1350), Expect = e-145
 Identities = 301/552 (54%), Positives = 358/552 (64%), Gaps = 17/552 (3%)
 Frame = -3

Query: 1810 HFSSLCIHHRAINLHKR-----HWHCVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTY 1646
            HF  L  HH ++N   R        CVS+L    ID++  RIPSLE HSTS      LTY
Sbjct: 18   HFRPLS-HHPSLNSKARDSVCFRSPCVSTLTAAVIDIQ--RIPSLEAHSTSLDATRPLTY 74

Query: 1645 TGSIGLTVQTSFGATLATETFLTGKEALIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFV 1466
             G++G  ++TS  ATLATET LTG+EA+I                     A I   D  V
Sbjct: 75   VGAVGPPMKTSIEATLATETLLTGEEAVIAAAAAEAVALARAAVEVAKDAAQIIGNDPSV 134

Query: 1465 KLDDADDFPSEGDILLLERARPIEVQ-------PEEENISHHSTKD----TENSIGRESE 1319
            KL+ ++DF SE D   LER R  E++           +   H  KD    T+ S     E
Sbjct: 135  KLEKSEDFSSEADAFRLERVRLTEMELIRTTNNSTPTDTEPHEAKDPSQGTDVSNLTHKE 194

Query: 1318 IELLQVQLSKSIAARSGXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSD 1139
            +E  Q+Q  +SIA RSG               A               K  + QEVDYSD
Sbjct: 195  LESQQMQYPESIAVRSGRQTDRKARRTRAAEKAAVSVIPVKSGSTSKKKRSTFQEVDYSD 254

Query: 1138 PLHYXXXXXXXXXXXXXTEEIELSEGIQGXXXXXXXXXXXXE-HGGQPTIAQWASVAGLD 962
            PL Y              EE+ELSE IQ             E HGGQPT AQWA+ AG+D
Sbjct: 255  PLRYLRGTTSTSKLLTAAEELELSEAIQDMLKLERLQQELAERHGGQPTFAQWAAAAGVD 314

Query: 961  RKTLRERLNYGIHCKERMIKSNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDA 782
            ++TLR+RLNYG  CK++MIKSNIRLVISIAKNYQG GMNL+DLVQEGCRGLVKG EKFDA
Sbjct: 315  QRTLRKRLNYGRFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDA 374

Query: 781  SKGFKFSTYAHWWIKQSIRKSLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDND 602
            SKGFKFSTYAHWWIKQ++R+SLSEQSRTIRLP H+ +A YRV+EA+KQLYS+NGR+PD  
Sbjct: 375  SKGFKFSTYAHWWIKQAVRRSLSEQSRTIRLPFHMVEATYRVREAKKQLYSENGRYPDYQ 434

Query: 601  EIAKATGLSLKRLMTILLTPKAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMK 422
            E+A+ATGLS+KRL  ++LTPKAPRS DQK GI+Q+LKPSEV ADPEAET E++L KQ  K
Sbjct: 435  EVAEATGLSMKRLNAVMLTPKAPRSLDQKIGINQSLKPSEVIADPEAETSEEILIKQFRK 494

Query: 421  KDLEKVLDSLNSREKQVIRSRFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNK 242
            +DL KVLD+LN REKQV+R RFGL+DG  KTLQEIGE MGV+RERIRQIES AFRKLKNK
Sbjct: 495  QDLNKVLDTLNPREKQVVRWRFGLEDGMTKTLQEIGELMGVSRERIRQIESSAFRKLKNK 554

Query: 241  KRIENLKQYLIS 206
            KR  +L+QY+IS
Sbjct: 555  KRTRHLQQYVIS 566


>ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Eucalyptus
            grandis]
          Length = 601

 Score =  518 bits (1334), Expect = e-144
 Identities = 303/588 (51%), Positives = 373/588 (63%), Gaps = 16/588 (2%)
 Frame = -3

Query: 1921 PSSHMTHSLVPAPFQLQVQLSSPLLYVWKGRIKRAFPHFSSLCIHHRAINLHKRHWHCVS 1742
            P+ H+ HS         VQ + P  +  K R      +F + C+      L       +S
Sbjct: 32   PAGHLLHS---------VQDARPNCFAEKNR---ETTYFRAQCL------LSATSPSTLS 73

Query: 1741 SLATTFI-DVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGKEA 1565
            S AT  + D+EKLR+PSLE  + S  +    TYTG++G   + + GATLATET LT  EA
Sbjct: 74   SAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEA 133

Query: 1564 LIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILLLERARPIEVQ- 1388
            +I                     A++   ++   +D+  +  S     L + A  +E++ 
Sbjct: 134  VIAAAASEAVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLELEH 193

Query: 1387 ---------PE----EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXX 1247
                     PE    E N+  +ST  +E+      E++LLQVQL KSIA RS        
Sbjct: 194  SNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKE 253

Query: 1246 XXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELS 1067
                    A               K  + QEVDYSDPL Y             TEE ELS
Sbjct: 254  IRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELS 313

Query: 1066 EGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIR 890
            EGIQ             E  GG+P  AQWA+ AG+D+KTLR+RLNYG  CK++MIKSNIR
Sbjct: 314  EGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIR 373

Query: 889  LVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSE 710
            LVISIAKNYQG GMNL+DLVQEGCRGLV+GCEKFDASKGFKFSTYAHWWIKQ++RKSLS+
Sbjct: 374  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSD 433

Query: 709  QSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPR 530
            QSRTIRLP H+ +A YRVKEARKQLYS+NGR PDN+E+A+ATGLS+KRL  +L+TPKAPR
Sbjct: 434  QSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPR 493

Query: 529  SFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGL 350
            S DQK GI+Q LKPSEV ADP AET EDVL KQ M++DLEKVLD+LN REKQV+R RFGL
Sbjct: 494  SLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGL 553

Query: 349  DDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            +DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY+++
Sbjct: 554  EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 601


>ref|XP_010943391.1| PREDICTED: RNA polymerase sigma factor sigB-like [Elaeis guineensis]
          Length = 555

 Score =  517 bits (1332), Expect = e-143
 Identities = 293/541 (54%), Positives = 358/541 (66%), Gaps = 6/541 (1%)
 Frame = -3

Query: 1810 HFSSLCIHHRAINLHKR-----HWHCVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTY 1646
            HF SL  HH ++N   R        CVS+     ID+E   I SLE  STS A    LTY
Sbjct: 18   HFRSLS-HHPSLNSKARDSVCFRSQCVSTPTAAVIDME--HILSLEARSTSLAATRPLTY 74

Query: 1645 TGSIGLTVQTSFGATLATETFLTGKEALIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFV 1466
             G+IG   +T+  ATLATE  LTG+EA+I                     A+    D  V
Sbjct: 75   VGAIGPPTKTNMEATLATEALLTGEEAIIAAAAAEAVALARTAVEAAKDAALTIANDPSV 134

Query: 1465 KLDDADDFPSEGDILLLERARPIEVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKS 1286
            KL+ + DF SE DIL LER+   + +P EE+++   ++D + S    +E+E  ++  S S
Sbjct: 135  KLEKSLDFSSEADILQLERSTATDTKPHEEHLAKDPSQDVDISNLIHNELEPQKMHYSGS 194

Query: 1285 IAARSGXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXX 1106
            IA RSG               A               K  + QE+DYSDPL Y       
Sbjct: 195  IAVRSGRQTERIARRARAAERAASSVIPVKSGSSSKKKRSAFQEIDYSDPLRYLRGTTST 254

Query: 1105 XXXXXXTEEIELSEGIQGXXXXXXXXXXXXE-HGGQPTIAQWASVAGLDRKTLRERLNYG 929
                   EE+ELSEGIQ             E +G QPT+AQWA+ AG+D++TLR+RLNYG
Sbjct: 255  SKLLTAAEELELSEGIQDLLKLERLREELEERNGAQPTLAQWAAAAGVDQRTLRKRLNYG 314

Query: 928  IHCKERMIKSNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAH 749
              CK++MI SNIRLVISIAKNYQG GMNL+DLVQEGCRGLVKG EKFDASKGFKFSTYAH
Sbjct: 315  TFCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAH 374

Query: 748  WWIKQSIRKSLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLK 569
            WWIKQ++R+SLSEQSRTIRLP H+ +A YRV++A KQLY++NGRHPD +EIA+ATGLS+K
Sbjct: 375  WWIKQAVRRSLSEQSRTIRLPFHMVEATYRVRQAEKQLYNENGRHPDYEEIAEATGLSMK 434

Query: 568  RLMTILLTPKAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLN 389
            RL  ++L PKAPRS DQK GI+Q+LKPSEV ADP+AET E++L KQ MK+DL KVL+SLN
Sbjct: 435  RLNAVMLIPKAPRSLDQKIGINQSLKPSEVIADPKAETSEEILIKQFMKQDLNKVLNSLN 494

Query: 388  SREKQVIRSRFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLI 209
             REKQVIR RFGL+DG  KTLQEIGE MGV+RERIRQIES AFRKLK+KKR +NL+QY+ 
Sbjct: 495  PREKQVIRWRFGLEDGMTKTLQEIGELMGVSRERIRQIESNAFRKLKSKKRTKNLQQYVN 554

Query: 208  S 206
            S
Sbjct: 555  S 555


>ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
            grandis] gi|629111779|gb|KCW76739.1| hypothetical protein
            EUGRSUZ_D01094 [Eucalyptus grandis]
          Length = 588

 Score =  517 bits (1331), Expect = e-143
 Identities = 291/530 (54%), Positives = 354/530 (66%), Gaps = 16/530 (3%)
 Frame = -3

Query: 1747 VSSLATTFI-DVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGK 1571
            +SS AT  + D+EKLR+PSLE  + S  +    TYTG++G   + + GATLATET LT  
Sbjct: 59   LSSAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSD 118

Query: 1570 EALIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILLLERARPIEV 1391
            EA+I                     A++   ++   +D+  +  S     L + A  +E+
Sbjct: 119  EAVIAAAASEAVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLEL 178

Query: 1390 Q----------PE----EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXX 1253
            +          PE    E N+  +ST  +E+      E++LLQVQL KSIA RS      
Sbjct: 179  EHSNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTER 238

Query: 1252 XXXXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIE 1073
                      A               K  + QEVDYSDPL Y             TEE E
Sbjct: 239  KEIRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETE 298

Query: 1072 LSEGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSN 896
            LSEGIQ             E  GG+P  AQWA+ AG+D+KTLR+RLNYG  CK++MIKSN
Sbjct: 299  LSEGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSN 358

Query: 895  IRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSL 716
            IRLVISIAKNYQG GMNL+DLVQEGCRGLV+GCEKFDASKGFKFSTYAHWWIKQ++RKSL
Sbjct: 359  IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSL 418

Query: 715  SEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKA 536
            S+QSRTIRLP H+ +A YRVKEARKQLYS+NGR PDN+E+A+ATGLS+KRL  +L+TPKA
Sbjct: 419  SDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKA 478

Query: 535  PRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRF 356
            PRS DQK GI+Q LKPSEV ADP AET EDVL KQ M++DLEKVLD+LN REKQV+R RF
Sbjct: 479  PRSLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRF 538

Query: 355  GLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            GL+DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY+++
Sbjct: 539  GLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 588


>ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Pyrus x
            bretschneideri]
          Length = 643

 Score =  516 bits (1330), Expect = e-143
 Identities = 287/533 (53%), Positives = 353/533 (66%), Gaps = 17/533 (3%)
 Frame = -3

Query: 1753 HCVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTG 1574
            H  S+  TT +D+E+LR+PSLE +S S A++   TYTG+IG   + +FGATLATET LT 
Sbjct: 111  HSTSTATTTVLDLERLRLPSLEVNSDSLASSRPWTYTGAIGPLTEANFGATLATETLLTS 170

Query: 1573 KEALIPVXXXXXXXXXXXXXXXXXXXAMISLGDT--FVKLDDADDFPSEGDILLLERARP 1400
            +EA+I                     AM+    T    K + +     E   L    A+ 
Sbjct: 171  EEAVIEAAAAEAVTLAKAALKVAKDVAMLVSSSTNHSAKPESSSPVSPETKALHFNWAQH 230

Query: 1399 IEVQPE--------------EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXX 1262
            +E +                E++    + K+ E       E ELLQ QLSK I A+S   
Sbjct: 231  METEQVSRVGASMGAETAFVEDHFIQSAIKELEEVEQTYEEFELLQEQLSKGITAKSSRQ 290

Query: 1261 XXXXXXXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTE 1082
                         A               K  S QE+D+SDPL Y              E
Sbjct: 291  TERKARRAKAAEKAAASVVSVKSGSATRKKRSSVQEIDHSDPLRYLRSTTHTSRLLTANE 350

Query: 1081 EIELSEGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMI 905
            EIE SEGIQ             +  GGQPTIAQWA+ AG+D+KTLR+R+NYGI CK++MI
Sbjct: 351  EIEFSEGIQELLKLEKLHEELAQRCGGQPTIAQWAAAAGVDQKTLRKRVNYGILCKDKMI 410

Query: 904  KSNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIR 725
            KSNIRLVISIAKNYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++R
Sbjct: 411  KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 470

Query: 724  KSLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLT 545
            KSLS+QSRTIRLP H+ +A YRV+EA+KQLYS NGRHP+++E+A+ATGLS+KRL  +LLT
Sbjct: 471  KSLSDQSRTIRLPFHMVEATYRVREAKKQLYSLNGRHPNDEEVAEATGLSMKRLSAVLLT 530

Query: 544  PKAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIR 365
            PKAPRS +QK GI+Q LKPSEV +DP+AET ED+L K+ MK+DLEKVLDSLN+REKQV+R
Sbjct: 531  PKAPRSLEQKIGINQNLKPSEVISDPDAETAEDLLMKKFMKQDLEKVLDSLNTREKQVVR 590

Query: 364  SRFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
             RFGL+DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY++S
Sbjct: 591  WRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVVS 643


>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
            gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
            [Theobroma cacao]
          Length = 623

 Score =  516 bits (1330), Expect = e-143
 Identities = 292/536 (54%), Positives = 351/536 (65%), Gaps = 23/536 (4%)
 Frame = -3

Query: 1744 SSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGKEA 1565
            S+ AT  +DVEKLR+PS E H  S A     TY G+ G   + S GATLAT+  LT  EA
Sbjct: 85   STTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGATGPPSEASLGATLATDNLLTSDEA 144

Query: 1564 LIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLD-------DADDFPSEGDILL-LER 1409
            +I                     A+++    + K +         D F S+  +    ER
Sbjct: 145  VIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTEMKSGVSFATDSFTSKWALFTEAER 204

Query: 1408 ARPI------EVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXX 1247
            A  I      E + EE++   +ST +++       E+E L+ QLS+SIA RS        
Sbjct: 205  AGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEELEHLEEQLSRSIAVRSRRQTERKA 264

Query: 1246 XXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELS 1067
                    A               +  + Q+VDYSDPL Y              EE+ELS
Sbjct: 265  KRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYSDPLRYLRGTTSTSRLLTANEELELS 324

Query: 1066 EGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIR 890
            EGIQ             E  GGQPT AQWA+ AG+D+KTLR RLNYG+HCK++MIKSNIR
Sbjct: 325  EGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVDQKTLRSRLNYGVHCKDKMIKSNIR 384

Query: 889  LVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSE 710
            LVISIAKNYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+
Sbjct: 385  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 444

Query: 709  QSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPR 530
            QSRTIRLP H+ +A YRVKEARKQLYS+NGRHPDN+E+A+ATGLS+KRL  +LLTPKAPR
Sbjct: 445  QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPR 504

Query: 529  SFDQKTGIDQTLKPS--------EVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQ 374
            S DQK GI+Q LKPS        EV ADPEAET ED+L KQ M+KDLEKVLDSL+ RE+Q
Sbjct: 505  SLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAEDMLIKQFMRKDLEKVLDSLSQRERQ 564

Query: 373  VIRSRFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            VIR RFG++DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QYL+S
Sbjct: 565  VIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLLS 620


>ref|XP_009377636.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Pyrus x
            bretschneideri]
          Length = 613

 Score =  515 bits (1327), Expect = e-143
 Identities = 284/517 (54%), Positives = 347/517 (67%), Gaps = 1/517 (0%)
 Frame = -3

Query: 1753 HCVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTG 1574
            H  S+  TT +D+E+LR+PSLE +S S A++   TYTG+IG   + +FGATLATET LT 
Sbjct: 111  HSTSTATTTVLDLERLRLPSLEVNSDSLASSRPWTYTGAIGPLTEANFGATLATETLLTS 170

Query: 1573 KEALIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILLLERARPIE 1394
            +EA+I                     AM+ +    V    A              +   E
Sbjct: 171  EEAVIEAAAAEAVTLAKAALKVAKDVAMLHMETEQVSRVGA--------------SMGAE 216

Query: 1393 VQPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXXXXXXXXXXAXX 1214
                E++    + K+ E       E ELLQ QLSK I A+S                A  
Sbjct: 217  TAFVEDHFIQSAIKELEEVEQTYEEFELLQEQLSKGITAKSSRQTERKARRAKAAEKAAA 276

Query: 1213 XXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSEGIQGXXXXXX 1034
                         K  S QE+D+SDPL Y              EEIE SEGIQ       
Sbjct: 277  SVVSVKSGSATRKKRSSVQEIDHSDPLRYLRSTTHTSRLLTANEEIEFSEGIQELLKLEK 336

Query: 1033 XXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRLVISIAKNYQG 857
                  +  GGQPTIAQWA+ AG+D+KTLR+R+NYGI CK++MIKSNIRLVISIAKNYQG
Sbjct: 337  LHEELAQRCGGQPTIAQWAAAAGVDQKTLRKRVNYGILCKDKMIKSNIRLVISIAKNYQG 396

Query: 856  VGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQSRTIRLPNHI 677
             GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+QSRTIRLP H+
Sbjct: 397  AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 456

Query: 676  ADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRSFDQKTGIDQT 497
             +A YRV+EA+KQLYS NGRHP+++E+A+ATGLS+KRL  +LLTPKAPRS +QK GI+Q 
Sbjct: 457  VEATYRVREAKKQLYSLNGRHPNDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQN 516

Query: 496  LKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLDDGRMKTLQEI 317
            LKPSEV +DP+AET ED+L K+ MK+DLEKVLDSLN+REKQV+R RFGL+DGRMKTLQEI
Sbjct: 517  LKPSEVISDPDAETAEDLLMKKFMKQDLEKVLDSLNTREKQVVRWRFGLEDGRMKTLQEI 576

Query: 316  GESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            GE MGV+RERIRQIESCAFRKLKNKKR ++L+QY++S
Sbjct: 577  GELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVVS 613


>ref|XP_010918654.1| PREDICTED: RNA polymerase sigma factor sigB-like [Elaeis guineensis]
          Length = 566

 Score =  514 bits (1325), Expect = e-143
 Identities = 289/529 (54%), Positives = 351/529 (66%), Gaps = 14/529 (2%)
 Frame = -3

Query: 1750 CVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGK 1571
            CVS+     ID++  RIPSLE  S S      LTY GS+G  ++T   ATLATET LTG+
Sbjct: 42   CVSTQTAAVIDIQ--RIPSLEARSNSLDDTRPLTYVGSVGPPMKTGIEATLATETLLTGE 99

Query: 1570 EALIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILLLERARPIEV 1391
            EA++                     A I   D  VKL+ ++DF SE D   LER R  E+
Sbjct: 100  EAVVAAAAAEAVALARAAVEVAKDAAQIIRNDPSVKLEKSEDFSSEADAFWLERVRHNEM 159

Query: 1390 QPEEENISHHSTK-DTENSIGRE------------SEIELLQVQLSKSIAARSGXXXXXX 1250
                   +HHST  DTE    ++            +E++  Q+Q  +SIA RSG      
Sbjct: 160  GLIRT--THHSTPTDTEPHEAKDPSQDIDVSNLTNNELQSQQMQYPESIAVRSGRQTERK 217

Query: 1249 XXXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIEL 1070
                     A               K  + QE+DYSDPLHY              EE+EL
Sbjct: 218  ARRARAEEKAAVSVIPIKSGSSSKKKRSAFQEIDYSDPLHYLRGTTSTSKLLTAAEELEL 277

Query: 1069 SEGIQGXXXXXXXXXXXXE-HGGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNI 893
            S+GIQ             E HGGQPT AQWA+ AG+D++TLR+RLNYG  CK++MIKSNI
Sbjct: 278  SKGIQDLLKLEKLREELAERHGGQPTFAQWAAAAGVDQRTLRKRLNYGGFCKDKMIKSNI 337

Query: 892  RLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLS 713
            RLVISIAKNYQG GMNL+DLVQEGCRGLVKG E+FDA KGFKFSTYAHWWIKQ++R+SLS
Sbjct: 338  RLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAERFDALKGFKFSTYAHWWIKQAVRRSLS 397

Query: 712  EQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAP 533
            EQSRTIRLP H+ +A YRV+EA+KQLYS+NGRHPD +E+A+ATGLS+KRL  ++LTPKAP
Sbjct: 398  EQSRTIRLPIHMVEATYRVREAKKQLYSENGRHPDYEEVAEATGLSMKRLNAVMLTPKAP 457

Query: 532  RSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFG 353
            RS DQK GI+Q+LKPSEV ADP+AET E++L KQ MK+DL KVLD+LN REKQV+R RFG
Sbjct: 458  RSLDQKIGINQSLKPSEVIADPKAETSEEILIKQFMKQDLNKVLDTLNPREKQVVRWRFG 517

Query: 352  LDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            L+DG  KTLQEIGE MGV+RERIRQIES AFRKLK+KKR  +L+QY+IS
Sbjct: 518  LEDGMTKTLQEIGELMGVSRERIRQIESSAFRKLKSKKRTRHLQQYVIS 566


>ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB [Prunus mume]
          Length = 643

 Score =  514 bits (1325), Expect = e-143
 Identities = 286/528 (54%), Positives = 354/528 (67%), Gaps = 15/528 (2%)
 Frame = -3

Query: 1744 SSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGKEA 1565
            S+  TT +DVEKLR+PSLE +S S A     TYTG+ G  ++ +FGATLATE  LT +EA
Sbjct: 116  STGTTTVLDVEKLRLPSLEVNSDSLAANRPWTYTGATGPPIEANFGATLATENLLTSEEA 175

Query: 1564 LIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILLLERARPIEV-Q 1388
            +I                     A++   +   K + +     + + L  + A+ +E  Q
Sbjct: 176  VIAAAAAEAVTLAKAALKVAKDVALLVSTNHSAKAESSSPVSPKTNALHFKWAKHMETKQ 235

Query: 1387 PE-------------EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXX 1247
            P              E +    + K++E+      E ELLQ QLS+ I ARS        
Sbjct: 236  PSRLGASMGSETALVENHFIQLAIKESEDVESTNQEFELLQEQLSEGITARSSRQIERKA 295

Query: 1246 XXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELS 1067
                    A               K  S Q+VD+SDPL Y              EEIELS
Sbjct: 296  RRAKAAEKAAASVVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELS 355

Query: 1066 EGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIR 890
            EGIQ             +  GGQPTIAQWA+ AG+D+KTLR+R+NYGI CK++MIKSNIR
Sbjct: 356  EGIQELLKLEKLQEELVQRCGGQPTIAQWAAAAGVDQKTLRKRINYGILCKDKMIKSNIR 415

Query: 889  LVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSE 710
            LVISIAKNYQG GMNL+DLVQ+GCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+
Sbjct: 416  LVISIAKNYQGAGMNLQDLVQQGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 475

Query: 709  QSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPR 530
            QSRTIRLP H+ +A YRV+EA+KQLYS NGRHP+++E+A+ATGLS+KRL  +LLTPKAPR
Sbjct: 476  QSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPR 535

Query: 529  SFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGL 350
            S +QK GI+Q LKPSEV ADP+AET ED+L K+ MK+DLEKVLDSLN+REKQV+R RFGL
Sbjct: 536  SLEQKIGINQNLKPSEVIADPDAETAEDMLMKKFMKQDLEKVLDSLNAREKQVVRWRFGL 595

Query: 349  DDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            +DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY++S
Sbjct: 596  EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVVS 643


>gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 578

 Score =  514 bits (1323), Expect = e-142
 Identities = 287/528 (54%), Positives = 347/528 (65%), Gaps = 15/528 (2%)
 Frame = -3

Query: 1744 SSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGKEA 1565
            S+  T  +DVEKLR+PS E HS S  T    TYTG+ G   + SFGATLATE  LT  EA
Sbjct: 48   STATTAVLDVEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDEA 107

Query: 1564 LIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILL--------LER 1409
            +I                     A++    +  K +      S  D L          ER
Sbjct: 108  VIAAAAAEAVALARAAAKVAKDAAIMVKNHSSAKTEMKSPGSSATDTLTSKWGLFTEAER 167

Query: 1408 ARPI------EVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXX 1247
            A  +      E++ EE++   +STK+++       E++LL+ QLS+SIA RS        
Sbjct: 168  AGIVGDYVSDELEMEEDDFEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSNRQPERKA 227

Query: 1246 XXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELS 1067
                    A               +  + Q++DYSDPL Y              EE+ELS
Sbjct: 228  KRTRAAEKAATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELELS 287

Query: 1066 EGIQGXXXXXXXXXXXXEHGGQP-TIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIR 890
            EGIQ             E  G+P T AQWA+ A +DRKTLRERLNYG  CK++MIKSNIR
Sbjct: 288  EGIQDLLKLEVLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICKDKMIKSNIR 347

Query: 889  LVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSE 710
            LVISIAKNYQG GMNL+DLVQEGCRGL++G EKFDASKGFKFSTYAHWWIKQ++RKSLS+
Sbjct: 348  LVISIAKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 407

Query: 709  QSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPR 530
            QSRTIRLP H+ +A YRVKEARKQLYS+NGR PDN E+A+ATGLS+KRL  +LL PKAPR
Sbjct: 408  QSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAPR 467

Query: 529  SFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGL 350
            S DQK GI+Q LKPSEV ADPEA++ ED+L KQ MKKDLEKVLDSL+ RE+QVIR RFG+
Sbjct: 468  SLDQKIGINQNLKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFGM 527

Query: 349  DDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            +DGRMKTLQEIGESMGV+RERIRQIE CAFRKLKNK+R ++L+QYL+S
Sbjct: 528  EDGRMKTLQEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575


>ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
            gi|802585247|ref|XP_012070323.1| PREDICTED: RNA
            polymerase sigma factor sigB [Jatropha curcas]
            gi|643732514|gb|KDP39610.1| hypothetical protein
            JCGZ_02630 [Jatropha curcas]
          Length = 577

 Score =  507 bits (1306), Expect = e-140
 Identities = 289/526 (54%), Positives = 344/526 (65%), Gaps = 14/526 (2%)
 Frame = -3

Query: 1741 SLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGKEAL 1562
            S +T  +D+EKLR+PS E H  S       TY GSIG   +T FG+TLATET +TG +A+
Sbjct: 53   STSTAVLDLEKLRLPSFEAHPDSLVANSPWTYVGSIGPPKET-FGSTLATETLITGDDAV 111

Query: 1561 IPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILL-------LERAR 1403
            I                     A++       + +   + PS  D+          +RAR
Sbjct: 112  IAAAAAEAVALARAAAKVAKDAAILVKSFPSSEAESKLEIPSIADVSSRWPQFTETDRAR 171

Query: 1402 PI------EVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXXXX 1241
             I      E    EE+   H TK++++      E+ELLQ QLS+ IA RS          
Sbjct: 172  IIGDSVTAETGSREEHPMQHPTKESDHLEPTHEELELLQKQLSEGIAVRSRRQTERKERR 231

Query: 1240 XXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSEG 1061
                  A               K    QEVDYSDPL Y             TEE+ELSEG
Sbjct: 232  TRAAEKAAANVMSWKSGSTSKKKRGPLQEVDYSDPLRYLRGTTSTSKLLTATEELELSEG 291

Query: 1060 IQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRLV 884
            IQ             E  GGQPT  QWA+ AG+D+KTLR RLNYGI CK+RMIKSNIRLV
Sbjct: 292  IQDLLKLERLHEELAERCGGQPTFQQWAAAAGVDQKTLRTRLNYGISCKDRMIKSNIRLV 351

Query: 883  ISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQS 704
            ISIAKNYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+QS
Sbjct: 352  ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 411

Query: 703  RTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRSF 524
            RTIRLP H+ +A YRVKEARKQLYS+NGR+PD++E+A+ATGLS+KRL  +LLTPKAPRS 
Sbjct: 412  RTIRLPFHMVEATYRVKEARKQLYSENGRYPDDEEVAEATGLSMKRLSAVLLTPKAPRSL 471

Query: 523  DQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLDD 344
            DQK GI+  LKPSE+ ADP+AET ED+L KQ MK+DLEKVLDSL+ RE QVIR RFGL+D
Sbjct: 472  DQKIGINMDLKPSEIIADPDAETAEDLLMKQFMKQDLEKVLDSLSPRENQVIRWRFGLED 531

Query: 343  GRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            GR+KTLQEIGE MGV+RERIRQIES AFRKLK KKR + LKQYL++
Sbjct: 532  GRIKTLQEIGEIMGVSRERIRQIESSAFRKLKKKKRTKQLKQYLVA 577


>ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
            gi|763778947|gb|KJB46070.1| hypothetical protein
            B456_007G347300 [Gossypium raimondii]
          Length = 578

 Score =  507 bits (1305), Expect = e-140
 Identities = 286/529 (54%), Positives = 349/529 (65%), Gaps = 16/529 (3%)
 Frame = -3

Query: 1744 SSLATTFI-DVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGKE 1568
            +S+ATT + DVEKLR+PS E HS S  T    TYTG+ G   + SFGATLATE  LT  E
Sbjct: 47   TSMATTAVLDVEKLRLPSFEAHSNSVVTDRPWTYTGATGPPSEASFGATLATENLLTSDE 106

Query: 1567 ALIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILL--------LE 1412
            A+I                     A++       K +      S  D L          E
Sbjct: 107  AVIAAAAAEAVALARAAAKVAKDAAIMVKNHGSAKTEMKSPGSSATDTLTSKWGLFTEAE 166

Query: 1411 RARPI------EVQPEEENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXX 1250
            RA  +      E++ EE+++  +STK+++       E++LL+ QLS+SIA RS       
Sbjct: 167  RAGIVGDYVSDELELEEDHLEQNSTKESDELEPTNEELKLLEEQLSRSIAVRSHRQTERK 226

Query: 1249 XXXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIEL 1070
                     A               +  + Q++DYSDPL Y              EE+EL
Sbjct: 227  AKRTRAAEKAATNVVSVKSGSTNRKRRGALQDIDYSDPLRYLRGTTNTSKLLTANEELEL 286

Query: 1069 SEGIQGXXXXXXXXXXXXEHGGQP-TIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNI 893
            SEGIQ             E  G+P T AQWA+ A +DRKTLRERLNYG  C ++MIKSNI
Sbjct: 287  SEGIQDLLKLEGLHEELAERCGRPPTFAQWAAAAEVDRKTLRERLNYGTICMDKMIKSNI 346

Query: 892  RLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLS 713
            RLVISIAKNYQG GMNL+DLVQEGCRGL++G EKFDASKGFKFSTYAHWWIKQ++RKSLS
Sbjct: 347  RLVISIAKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 406

Query: 712  EQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAP 533
            +QSRTIRLP H+ +A YRVKEARKQL+S+NGR PDN E+A+ATGLS+KRL  +LL PKAP
Sbjct: 407  DQSRTIRLPFHMVEATYRVKEARKQLFSENGRQPDNIEVAEATGLSMKRLTAVLLAPKAP 466

Query: 532  RSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFG 353
            RS DQK GI+Q LKPSEV ADPEA++ ED+L KQ MKKDLEKVLDSL+ RE+QVIR RFG
Sbjct: 467  RSLDQKIGINQNLKPSEVIADPEADSAEDILLKQFMKKDLEKVLDSLSPRERQVIRWRFG 526

Query: 352  LDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            ++DGR+KTLQEIGESMGV+RERIRQIE CAFRKLKNK+R ++L+QYL+S
Sbjct: 527  MEDGRVKTLQEIGESMGVSRERIRQIELCAFRKLKNKRRTKHLQQYLLS 575


>ref|XP_009398609.1| PREDICTED: RNA polymerase sigma factor sigB-like [Musa acuminata
            subsp. malaccensis]
          Length = 567

 Score =  504 bits (1299), Expect = e-140
 Identities = 288/546 (52%), Positives = 351/546 (64%), Gaps = 17/546 (3%)
 Frame = -3

Query: 1792 IHHRAINLHKRHWHCVSSLATTFIDVEKLRIPSLEDHSTSAATAG--SLTYTGSIGLTVQ 1619
            +H RA         CV S  T  ID E+  IP LE HSTS++T     LTY+GS+G  ++
Sbjct: 24   LHPRAREFVCFRSRCVLSPTTAVIDFEQ--IPKLEAHSTSSSTCAIRPLTYSGSVGPPIK 81

Query: 1618 TSFGATLATETFLTGKEALIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFP 1439
            TS  ATLA+ET L   EA+I                     A +   +   +++  ++ P
Sbjct: 82   TSIEATLASETLLQCDEAVIAAAAAEAVALARAALELAKDAAQMIGKNLSAEVEKLEETP 141

Query: 1438 SEGDILLLERARPIEVQ--------------PEEENISHHSTKDTENSIGRESEIELLQV 1301
            SE DI  LER    E +              P E N+S      T+ S     E E   +
Sbjct: 142  SEADIKWLERVSLTETEWAGFTNHPAATETIPFEYNVSLDQYASTDISSSTFDEPEFQGM 201

Query: 1300 QLSKSIAARSGXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXX 1121
            Q  ++IA RSG               A               K  + QE+DYSDPL Y  
Sbjct: 202  QHIENIAVRSGRQIERRARRARAADKATAGVISLKSGSSGKKKRSAFQEIDYSDPLRYLR 261

Query: 1120 XXXXXXXXXXXTEEIELSEGIQGXXXXXXXXXXXXEHGG-QPTIAQWASVAGLDRKTLRE 944
                        EEIELSEGIQ             E  G QPT AQWA+ AG+D+KTLR+
Sbjct: 262  GTTSTSKLLTAAEEIELSEGIQSLLKLERLQQDLAERNGCQPTFAQWAAAAGIDQKTLRK 321

Query: 943  RLNYGIHCKERMIKSNIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKF 764
            R+N+G +CK++MIKSNIRLVISIAKNYQG G+NL+DLVQEGCRGLVKG EKFDASKGFKF
Sbjct: 322  RINHGTYCKDKMIKSNIRLVISIAKNYQGAGINLQDLVQEGCRGLVKGAEKFDASKGFKF 381

Query: 763  STYAHWWIKQSIRKSLSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKAT 584
            STYAHWWIKQ++RKSLSEQSRTIRLP H+ +A YRV+EA+K+LYS+NGRHPDN+E+A+A 
Sbjct: 382  STYAHWWIKQAVRKSLSEQSRTIRLPFHMVEATYRVREAKKKLYSENGRHPDNEEVAEAA 441

Query: 583  GLSLKRLMTILLTPKAPRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKV 404
            GLS+KRL  ++LTPKAPRS DQK GI+Q+LK SEV ADP A+T ED+L KQ M++DL KV
Sbjct: 442  GLSMKRLAAVMLTPKAPRSLDQKIGINQSLKASEVIADPAAKTSEDILMKQFMREDLNKV 501

Query: 403  LDSLNSREKQVIRSRFGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENL 224
            LD+LN REKQV+R RFGLDDGRMKTLQEIGE MGV+RERIRQIESCAFRKLK+KKR +NL
Sbjct: 502  LDTLNLREKQVVRWRFGLDDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKSKKRTKNL 561

Query: 223  KQYLIS 206
            +QY+IS
Sbjct: 562  RQYIIS 567


>ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587881690|gb|EXB70625.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 574

 Score =  504 bits (1298), Expect = e-139
 Identities = 288/518 (55%), Positives = 344/518 (66%), Gaps = 8/518 (1%)
 Frame = -3

Query: 1735 ATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGKEALIP 1556
            AT  + VEKLR PSL+ +S S  +    TYTG+ G  V+ +F ATLATET LT +EA+I 
Sbjct: 58   ATYVLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIA 117

Query: 1555 VXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEG-DILLLERARPIE--VQP 1385
                                A++    T  + +      SE  +I   + A  +   ++ 
Sbjct: 118  AAAAEAVTLAKAAVKVAKDAALLVRPST--RAESISLVSSEARNIKTAQAASRVRDSLRA 175

Query: 1384 EEENISHHSTKDTENSIG----RESEIELLQVQLSKSIAARSGXXXXXXXXXXXXXXXAX 1217
            E   I  H  KD             E+ +LQ QLSKSIA RS                A 
Sbjct: 176  EMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAEKAA 235

Query: 1216 XXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSEGIQGXXXXX 1037
                          K  S Q+VD+SDPL Y             TEEIELSEGIQ      
Sbjct: 236  ANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLKLE 295

Query: 1036 XXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRLVISIAKNYQ 860
                   E  GG PT AQWA+ AG+D+KTLR R+NYGI CK++MIKSN+RLVISIAKNYQ
Sbjct: 296  KLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKNYQ 355

Query: 859  GVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQSRTIRLPNH 680
            G GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+QSRTIRLP H
Sbjct: 356  GAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 415

Query: 679  IADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRSFDQKTGIDQ 500
            + +A YRVKEARKQLYS+NGR P+++E+A+ATGLS+KRL  +LLTPKAPRS +QK GI+Q
Sbjct: 416  MVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQ 475

Query: 499  TLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLDDGRMKTLQE 320
             LKPSE+ ADP+AET EDVLT+Q MK+DL+KVLDSLN REKQVIR RFG+DDGRMKTLQE
Sbjct: 476  NLKPSEIIADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQE 535

Query: 319  IGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            IGE MGV+RERIRQIESCAFRKLKNKKR ++L+QYLIS
Sbjct: 536  IGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 573


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB [Fragaria vesca subsp.
            vesca]
          Length = 616

 Score =  504 bits (1297), Expect = e-139
 Identities = 277/531 (52%), Positives = 347/531 (65%), Gaps = 15/531 (2%)
 Frame = -3

Query: 1753 HCVSSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTG 1574
            H  S+   T +D+E+  +PSL  +S S       TYTG+IG   + ++GA LATET LT 
Sbjct: 86   HSTSTPTATLLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTS 145

Query: 1573 KEALIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILLLERARPIE 1394
            +EA+I                     A++   + + K++++           +  A+ +E
Sbjct: 146  EEAVIAAAAAEAVTLAKAALKVAKDVALLVSNNHYAKVENSSPVSCGTSAFHINWAQHLE 205

Query: 1393 VQPE--------------EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXX 1256
             +P               E++    +  ++EN      E ELLQ QLS  IAARS     
Sbjct: 206  TEPTLRIGDSMASETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTE 265

Query: 1255 XXXXXXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEI 1076
                       A               K  S Q+VD+SDPL Y              EEI
Sbjct: 266  RKARRTRAAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEI 325

Query: 1075 ELSEGIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKS 899
            ELSEGIQ             +  G QPT AQWA+ AG+D+KTLR+R+NYGI CK++MIKS
Sbjct: 326  ELSEGIQELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKS 385

Query: 898  NIRLVISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKS 719
            NIRLVISIAKNYQG GMNL+DLVQEGCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKS
Sbjct: 386  NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 445

Query: 718  LSEQSRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPK 539
            LS+QSRTIRLP H+ +A YRV+EA+KQLYS NGRHP+++E+A+ATGLS+KRL  +LLTPK
Sbjct: 446  LSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPK 505

Query: 538  APRSFDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSR 359
            APRS +QK GI+Q LKPS+V ADP+AET ED+L K+ MK+DLEKVLDSLN REKQVIR R
Sbjct: 506  APRSLEQKIGINQNLKPSDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWR 565

Query: 358  FGLDDGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            FG++DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY++S
Sbjct: 566  FGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLS 616


>ref|XP_008392513.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Malus
            domestica]
          Length = 638

 Score =  503 bits (1295), Expect = e-139
 Identities = 282/527 (53%), Positives = 347/527 (65%), Gaps = 14/527 (2%)
 Frame = -3

Query: 1744 SSLATTFIDVEKLRIPSLEDHSTSAATAGSLTYTGSIGLTVQTSFGATLATETFLTGKEA 1565
            S+  TT +D+EKLR+PSLE +S S A++   TYTG+I    + +FG+TLATET LT +EA
Sbjct: 112  STATTTVLDMEKLRLPSLEFNSDSLASSRPWTYTGAIDPPTEANFGSTLATETLLTSEEA 171

Query: 1564 LIPVXXXXXXXXXXXXXXXXXXXAMISLGDTFVKLDDADDFPSEGDILLLERARPIEVQP 1385
            +I                     AM+       K + +     E + L    A+ IE + 
Sbjct: 172  VIAAAAAEAVTLAKAALKVAKDVAMLVSTIHSAKPEISSPVSPETNALHFNWAQHIETEQ 231

Query: 1384 E-------------EENISHHSTKDTENSIGRESEIELLQVQLSKSIAARSGXXXXXXXX 1244
                          E++   ++ K++E       E ELLQ QLSK I A+S         
Sbjct: 232  VRVGASMGAETAFLEDHFIQYAEKESEEVERTNEEFELLQEQLSKGITAKSSRQTERKAR 291

Query: 1243 XXXXXXXAXXXXXXXXXXXXXXXKHFSAQEVDYSDPLHYXXXXXXXXXXXXXTEEIELSE 1064
                   A               K  S QE+D+SDPL Y              EEIELS 
Sbjct: 292  RSKAAEKAAASVVSVKSGSTTRKKRSSVQEIDHSDPLRYLRSTTHTSRLLTANEEIELSA 351

Query: 1063 GIQGXXXXXXXXXXXXEH-GGQPTIAQWASVAGLDRKTLRERLNYGIHCKERMIKSNIRL 887
            GIQ             +  G QPTIAQWA+ AG+D+KTLR+R+N GI CK++MIKSNIRL
Sbjct: 352  GIQELLKLEKLQEELTQRCGRQPTIAQWAAAAGVDQKTLRKRVNCGILCKDKMIKSNIRL 411

Query: 886  VISIAKNYQGVGMNLEDLVQEGCRGLVKGCEKFDASKGFKFSTYAHWWIKQSIRKSLSEQ 707
            VISIAKNYQG GMNL+DLVQ+GCRGLV+G EKFDASKGFKFSTYAHWWIKQ++RKSLS+Q
Sbjct: 412  VISIAKNYQGSGMNLQDLVQQGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 471

Query: 706  SRTIRLPNHIADAAYRVKEARKQLYSKNGRHPDNDEIAKATGLSLKRLMTILLTPKAPRS 527
            SRTIRLP H+ +A YRVKEA+KQLYS NGRHP+++E+A+ATGLS+KRL  +LLTPKAPRS
Sbjct: 472  SRTIRLPFHMVEATYRVKEAKKQLYSLNGRHPNDEEVAEATGLSMKRLSAVLLTPKAPRS 531

Query: 526  FDQKTGIDQTLKPSEVTADPEAETPEDVLTKQLMKKDLEKVLDSLNSREKQVIRSRFGLD 347
             DQK GI+   KPSEV +DP+AET ED+L K+ MK+DLEKVLDSLN REKQV+R RFGL+
Sbjct: 532  LDQKIGINLNFKPSEVISDPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVVRWRFGLE 591

Query: 346  DGRMKTLQEIGESMGVTRERIRQIESCAFRKLKNKKRIENLKQYLIS 206
            DGRMKTLQEIGE MGV+RERIRQIESCAFRKLKNKKR ++L+QY +S
Sbjct: 592  DGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYAVS 638