BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum24_contig00012402
         (505 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010941332.1| PREDICTED: mediator of RNA polymerase II tra...    55   6e-08
ref|XP_008811533.1| PREDICTED: mediator of RNA polymerase II tra...    60   6e-07

>ref|XP_010941332.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
           [Elaeis guineensis]
          Length = 440

 Score = 55.1 bits (131), Expect(2) = 6e-08
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
 Frame = -1

Query: 172 TKLFDISPNRSHWITSFRGSLPSFLPSXXXXXXXXXXXXXTHTADSV-SSTKEILSSF 2
           TKLFD+SP R+HW+ SFRGSLPSFLPS             + ++ +  SS KE+++ F
Sbjct: 98  TKLFDVSPQRAHWLASFRGSLPSFLPSASASASAAPIPSSSSSSSAAPSSAKEVVALF 155



 Score = 28.1 bits (61), Expect(2) = 6e-08
 Identities = 24/81 (29%), Positives = 30/81 (37%)
 Frame = -3

Query: 419 QSHHPQQILPSPARLGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANSNTYSNKNIFH 240
           QSH P  ++ SPARLGL                               N N   N N   
Sbjct: 3   QSHTPP-VMQSPARLGLPNAHSPSLPPNPSP-----------------NPNPNPNPNPNP 44

Query: 239 TPLSPSSSSACTIPPPPNGFP 177
            P +PSSSS+ T+P   +  P
Sbjct: 45  KPAAPSSSSSATVPTAGHHHP 65


>ref|XP_008811533.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
           [Phoenix dactylifera] gi|672113565|ref|XP_008811544.1|
           PREDICTED: mediator of RNA polymerase II transcription
           subunit 4 [Phoenix dactylifera]
           gi|672113570|ref|XP_008811562.1| PREDICTED: mediator of
           RNA polymerase II transcription subunit 4 [Phoenix
           dactylifera] gi|672113576|ref|XP_008811584.1| PREDICTED:
           mediator of RNA polymerase II transcription subunit 4
           [Phoenix dactylifera] gi|672113578|ref|XP_008811592.1|
           PREDICTED: mediator of RNA polymerase II transcription
           subunit 4 [Phoenix dactylifera]
           gi|672113580|ref|XP_008811602.1| PREDICTED: mediator of
           RNA polymerase II transcription subunit 4 [Phoenix
           dactylifera]
          Length = 437

 Score = 60.1 bits (144), Expect = 6e-07
 Identities = 28/57 (49%), Positives = 38/57 (66%)
 Frame = -1

Query: 172 TKLFDISPNRSHWITSFRGSLPSFLPSXXXXXXXXXXXXXTHTADSVSSTKEILSSF 2
           TKLFD+SP+R+HW+ SFRGSLPSFLPS             + T+ + SS KE+++ F
Sbjct: 94  TKLFDVSPHRAHWLASFRGSLPSFLPSASASATPLSSSCSSSTSAAPSSAKEVVALF 150